******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7368.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16213516-16213636 1.0000 120 chr3L:11602192-11602312 1.0000 120 chr3L:19818863-19818983 1.0000 120 chr2R:17721653-17721773 1.0000 120 chr3L:11366630-11366750 1.0000 120 chr2R:13424854-13424974 1.0000 120 chrX:8177898-8178018 1.0000 120 chr3L:11591923-11592043 1.0000 120 chrX:1794072-1794192 1.0000 120 chr3L:11599331-11599451 1.0000 120 chr3L:2411063-2411183 1.0000 120 chr3R:20773345-20773465 1.0000 120 chr3R:13526132-13526252 1.0000 120 chr3R:6815797-6815917 1.0000 120 chr3R:21089607-21089727 1.0000 120 chr2L:20803734-20803854 1.0000 120 chr3R:23787456-23787576 1.0000 120 chrX:5301015-5301135 1.0000 120 chr2R:20961062-20961182 1.0000 120 chr2L:4797756-4797876 1.0000 120 chr3R:22140209-22140329 1.0000 120 chr3R:8038028-8038148 1.0000 120 chr3L:10928917-10929037 1.0000 120 chr2L:5037561-5037681 1.0000 120 chr2L:19140401-19140521 1.0000 120 chrX:10210571-10210691 1.0000 120 chr2L:1887849-1887969 1.0000 120 chrX:17542845-17542965 1.0000 120 chr3L:6097419-6097539 1.0000 120 chr3R:15631048-15631168 1.0000 120 chr3L:21080596-21080716 1.0000 120 chr3L:18080119-18080239 1.0000 120 chr3R:30268887-30269007 1.0000 120 chrX:10581598-10581718 1.0000 120 chr2R:14111907-14112027 1.0000 120 chr3L:11601287-11601407 1.0000 120 chr2L:18341072-18341192 1.0000 120 chr3L:10352257-10352377 1.0000 120 chr3R:19656684-19656804 1.0000 120 chr3R:16248290-16248410 1.0000 120 chr3R:18787370-18787490 1.0000 120 chr3R:17505760-17505880 1.0000 120 chrX:11664185-11664305 1.0000 120 chr2R:20065634-20065754 1.0000 120 chr2R:18375086-18375206 1.0000 120 chr3L:2229281-2229401 1.0000 120 chr2L:19193845-19193965 1.0000 120 chr3L:13227035-13227155 1.0000 120 chrX:2356552-2356672 1.0000 120 chrX:1411426-1411546 1.0000 120 chr2R:9557593-9557713 1.0000 120 chr2L:3416636-3416756 1.0000 120 chr2L:7897349-7897469 1.0000 120 chrX:6528663-6528783 1.0000 120 chr2L:20463497-20463617 1.0000 120 chr2R:8358059-8358179 1.0000 120 chrX:21592166-21592286 1.0000 120 chrX:12000341-12000461 1.0000 120 chrX:779517-779637 1.0000 120 chr2R:8063017-8063137 1.0000 120 chr3L:14109949-14110069 1.0000 120 chr2L:5923876-5923996 1.0000 120 chr3L:1905430-1905550 1.0000 120 chr3L:16974724-16974844 1.0000 120 chrX:17875355-17875475 1.0000 120 chr3L:21738507-21738627 1.0000 120 chr3L:731663-731783 1.0000 120 chr3L:12030637-12030757 1.0000 120 chr2R:14482474-14482594 1.0000 120 chr2L:20802333-20802453 1.0000 120 chr3L:10724861-10724981 1.0000 120 chr2L:452201-452321 1.0000 120 chr2R:8307857-8307977 1.0000 120 chr3L:814021-814141 1.0000 120 chrX:3296201-3296321 1.0000 120 chrX:17678094-17678214 1.0000 120 chr2R:15483751-15483871 1.0000 120 chr3L:18748236-18748356 1.0000 120 chr2R:24685039-24685159 1.0000 120 chr3R:27084849-27084969 1.0000 120 chrX:21127436-21127556 1.0000 120 chr2R:9282839-9282959 1.0000 120 chr3L:94221-94341 1.0000 120 chr2L:4361641-4361761 1.0000 120 chrX:13568282-13568402 1.0000 120 chr2L:19015846-19015966 1.0000 120 chr3R:14356766-14356886 1.0000 120 chr2L:18372222-18372342 1.0000 120 chrX:13221402-13221522 1.0000 120 chr3L:22466571-22466691 1.0000 120 chr3L:11596673-11596793 1.0000 120 chr2L:7611686-7611806 1.0000 120 chr2R:19985044-19985164 1.0000 120 chr2L:2804670-2804790 1.0000 120 chr3R:14389392-14389512 1.0000 120 chr3L:2117145-2117265 1.0000 120 chr3L:9419483-9419603 1.0000 120 chr2L:5618093-5618213 1.0000 120 chr3L:8870705-8870825 1.0000 120 chr3R:29758476-29758596 1.0000 120 chr3R:28025384-28025504 1.0000 120 chr3L:13488312-13488432 1.0000 120 chr2L:18468756-18468876 1.0000 120 chr3L:4383293-4383413 1.0000 120 chr3L:2549046-2549166 1.0000 120 chrX:18834517-18834637 1.0000 120 chr3R:14007713-14007833 1.0000 120 chr2L:7071949-7072069 1.0000 120 chrX:7543996-7544116 1.0000 120 chr3L:20635710-20635830 1.0000 120 chr3L:388250-388370 1.0000 120 chr3R:9581250-9581370 1.0000 120 chr2L:4071743-4071863 1.0000 120 chr2R:24747644-24747764 1.0000 120 chr2L:18344470-18344590 1.0000 120 chrX:4175976-4176096 1.0000 120 chr3L:2575326-2575446 1.0000 120 chrX:13226588-13226708 1.0000 120 chrX:14897714-14897834 1.0000 120 chr2R:13469002-13469122 1.0000 120 chr3L:4619885-4620005 1.0000 120 chrX:13754595-13754715 1.0000 120 chrX:16966669-16966789 1.0000 120 chr3R:29538603-29538723 1.0000 120 chr3L:166684-166804 1.0000 120 chr3R:14390593-14390713 1.0000 120 chrX:21044560-21044680 1.0000 120 chrX:768071-768191 1.0000 120 chr3L:10928088-10928208 1.0000 120 chr3R:4687380-4687500 1.0000 120 chr3L:12058544-12058664 1.0000 120 chr3L:14622514-14622634 1.0000 120 chr2L:16590783-16590903 1.0000 120 chrX:10104609-10104729 1.0000 120 chr3L:4624054-4624174 1.0000 120 chr2R:19153422-19153542 1.0000 120 chrX:8891107-8891227 1.0000 120 chr2R:14494757-14494877 1.0000 120 chr2R:17811102-17811222 1.0000 120 chr2L:7199733-7199853 1.0000 120 chrX:3722326-3722446 1.0000 120 chr3R:8939811-8939931 1.0000 120 chrX:3289509-3289629 1.0000 120 chr2R:11364730-11364850 1.0000 120 chrX:6643058-6643178 1.0000 120 chr3L:2802225-2802345 1.0000 120 chr3L:6155242-6155362 1.0000 120 chr2L:4055559-4055679 1.0000 120 chr3L:16752571-16752691 1.0000 120 chr3L:16011310-16011430 1.0000 120 chr3R:12280878-12280998 1.0000 120 chr3L:6458084-6458204 1.0000 120 chr3R:31688849-31688969 1.0000 120 chr2L:2749539-2749659 1.0000 120 chr2R:11324012-11324132 1.0000 120 chr2R:24955699-24955819 1.0000 120 chrX:2334745-2334865 1.0000 120 chr3R:13808067-13808187 1.0000 120 chr3R:31312419-31312539 1.0000 120 chr2L:5249923-5250043 1.0000 120 chr3L:12016300-12016420 1.0000 120 chr2L:1486098-1486218 1.0000 120 chr2R:12013437-12013557 1.0000 120 chr3L:818467-818587 1.0000 120 chr2L:18150409-18150529 1.0000 120 chrX:3380254-3380374 1.0000 120 chrX:2648121-2648241 1.0000 120 chr3R:21887623-21887743 1.0000 120 chr3R:4961560-4961680 1.0000 120 chr4:505377-505497 1.0000 120 chr2L:20821571-20821691 1.0000 120 chrX:5926884-5927004 1.0000 120 chr2L:4348698-4348818 1.0000 120 chrX:13245889-13246009 1.0000 120 chr2R:14975250-14975370 1.0000 120 chrX:9251399-9251519 1.0000 120 chr3R:31680036-31680156 1.0000 120 chr2R:20162653-20162773 1.0000 120 chr3R:31768290-31768410 1.0000 120 chr3R:21837230-21837350 1.0000 120 chr3R:23147759-23147879 1.0000 120 chr2L:7899300-7899420 1.0000 120 chrX:13993265-13993385 1.0000 120 chrX:13238620-13238740 1.0000 120 chr2L:18707961-18708081 1.0000 120 chr3L:5807510-5807630 1.0000 120 chr3L:1087463-1087583 1.0000 120 chr3L:10325405-10325525 1.0000 120 chrX:14953147-14953267 1.0000 120 chr3L:16482295-16482415 1.0000 120 chr2L:19325549-19325669 1.0000 120 chr2R:11094364-11094484 1.0000 120 chr3L:16204255-16204375 1.0000 120 chrX:1826145-1826265 1.0000 120 chr3R:21599762-21599882 1.0000 120 chrX:18256656-18256776 1.0000 120 chr3L:8013976-8014096 1.0000 120 chr2L:20913067-20913187 1.0000 120 chr2R:19849289-19849409 1.0000 120 chr3R:23201185-23201305 1.0000 120 chr3R:24143889-24144009 1.0000 120 chr3L:7113100-7113220 1.0000 120 chr2L:5483211-5483331 1.0000 120 chr3R:14847358-14847478 1.0000 120 chr2L:18645604-18645724 1.0000 120 chr3R:22039605-22039725 1.0000 120 chr3R:24996646-24996766 1.0000 120 chr2L:21847502-21847622 1.0000 120 chrX:14038153-14038273 1.0000 120 chr2R:22242957-22243077 1.0000 120 chr3L:746441-746561 1.0000 120 chr3L:5863061-5863181 1.0000 120 chr3L:13435320-13435440 1.0000 120 chr3L:15209154-15209274 1.0000 120 chr2L:10791507-10791627 1.0000 120 chr3L:3879017-3879137 1.0000 120 chrX:9068925-9069045 1.0000 120 chr3R:27224856-27224976 1.0000 120 chrX:10717998-10718118 1.0000 120 chr2L:608248-608368 1.0000 120 chr2R:10474747-10474867 1.0000 120 chr3R:9230357-9230477 1.0000 120 chrX:13990590-13990710 1.0000 120 chrX:4970053-4970173 1.0000 120 chr2R:24896072-24896192 1.0000 120 chr3R:14765539-14765659 1.0000 120 chr3R:4403888-4404008 1.0000 120 chr2L:2168679-2168799 1.0000 120 chr3L:14984654-14984774 1.0000 120 chr2R:13957439-13957559 1.0000 120 chrX:6059281-6059401 1.0000 120 chr2R:18583373-18583493 1.0000 120 chr3L:2879900-2880020 1.0000 120 chr2L:5491342-5491462 1.0000 120 chr2R:14313656-14313776 1.0000 120 chr2L:19142543-19142663 1.0000 120 chr2L:8006172-8006292 1.0000 120 chr3L:1702630-1702750 1.0000 120 chrX:9078428-9078548 1.0000 120 chr3L:2533849-2533969 1.0000 120 chr3L:14253545-14253665 1.0000 120 chr3L:777401-777521 1.0000 120 chr2R:18894910-18895030 1.0000 120 chr3L:21685913-21686033 1.0000 120 chr3R:19924423-19924543 1.0000 120 chr3R:25490371-25490491 1.0000 120 chr3R:27140046-27140166 1.0000 120 chr2R:8751574-8751694 1.0000 120 chr3R:22185789-22185909 1.0000 120 chr3R:30095989-30096109 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG7368/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7368.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.3 C 0.191 G 0.194 T 0.315 Background letter frequencies (from file dataset with add-one prior applied): A 0.3 C 0.191 G 0.194 T 0.315 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGKKGTGG MEME-1 width = 8 sites = 36 llr = 319 E-value = 1.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKKGTGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C ::2:11:: probability G a8569:aa matrix T :233:9:: bits 2.4 * ** 2.1 * ** 1.9 * * ** 1.7 * * ** Relative 1.4 ** * ** Entropy 1.2 ** **** (12.8 bits) 1.0 ** **** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGTGG consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKKGTGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5618093-5618213 15 3.26e-06 TGGGCGCCCG GGGGGTGG GCAGCGGCCT chr3L:2229281-2229401 2 3.26e-06 A GGGGGTGG GACGCCCAAC chr3L:11601287-11601407 4 3.26e-06 TGG GGGGGTGG TTGCGTTGGA chr2L:5037561-5037681 36 3.26e-06 TAGCTGTCAA GGGGGTGG CGATGACGAT chrX:1794072-1794192 81 3.26e-06 gtttgggtgt gggggtgg gctctgctat chr3L:19818863-19818983 20 3.26e-06 taggtggcct gggggtgg CGCAACTTGC chr3R:12280878-12280998 11 1.18e-05 gtgcactggt ggtggtgg ttcagtggtg chr2L:19015846-19015966 44 1.18e-05 TGTGGCCgtg ggtggtgg gtggtgtgta chr3L:10724861-10724981 10 1.18e-05 agggttgtg ggtggtgg ttgggtgctg chr2L:5923876-5923996 70 1.18e-05 CAGCGGAGCC ggtggtgg caggcagtgg chr2R:8063017-8063137 66 1.18e-05 ttgggttgtg ggtggtgg gtggtgggtg chr3L:6097419-6097539 7 1.18e-05 AAAGTG GGCGGTGG ATGGGGTTGT chrX:8177898-8178018 73 1.18e-05 CCCTTGTgtg ggtggtgg gtggtgtgta chr3L:11602192-11602312 85 1.18e-05 ATGCAAAGTG GGCGGTGG GCGGTGGGTG chr2L:4797756-4797876 84 1.70e-05 TTTCCCGTGT GGGTGTGG CATGTGGCAA chr2L:7899300-7899420 53 3.81e-05 ATCCATTTGT GGTTGTGG GTCTCTTTTG chrX:1411426-1411546 86 3.81e-05 ATTTGATTCG GGCTGTGG AAAGGACTGT chr3R:16248290-16248410 1 3.81e-05 . GTGGGTGG CATAGCATTT chr2R:17721653-17721773 53 3.81e-05 gtgcgatgtg ggctgtgg gatggatgat chr3L:5807510-5807630 54 4.83e-05 TCATTGAAGA GGCGGCGG CCAGGGGCCG chrX:1826145-1826265 61 5.47e-05 ACATTCATCG GGGGCTGG GTCGTGTTTT chr2R:14975250-14975370 10 5.47e-05 TTTATTTTT GGGTGCGG TTGTAGGGCT chr3L:18080119-18080239 13 5.47e-05 TTTGGCCCCA GGGTGCGG CCCGTCGCTT chr3L:94221-94341 102 7.71e-05 GCATTTTGTA GTGTGTGG ATCTATATTT chr3R:31680036-31680156 4 9.02e-05 ACT GGCAGTGG CAATCGCTGG chrX:13221402-13221522 49 9.02e-05 GTCTAACACT GGTAGTGG TATGGTTTAA chr3L:13435320-13435440 99 1.18e-04 CGGTGGGCGA GCGGGTGG TTGGCGTTTG chr3L:16011310-16011430 108 1.18e-04 CGGAGGACGA GGAGGTGG TGCCA chr3L:814021-814141 17 1.18e-04 CTGCTTTCCG GGTGCTGG CTTACACACA chr2L:452201-452321 16 1.24e-04 GCAAAAAAGG GGGTCTGG AACTACAGTA chr2R:15483751-15483871 73 1.27e-04 TCTTTTTTTC GGGAGCGG GGGTATGTAA chrX:2648121-2648241 78 1.51e-04 GACCGCTGGT GTTTGTGG TGGCTTGGGC chr2L:19140401-19140521 55 1.51e-04 ATAATATCGT GTTTGTGG AAAATTAGTT chr3L:11591923-11592043 18 1.51e-04 CTGGATGGGT GTCTGTGG CTCGGGGAGT chr2R:24685039-24685159 93 1.59e-04 ACTGGCGATC GTGAGTGG AGCTTTCGAA chr2R:22242957-22243077 21 2.13e-04 GTGGCTGTGT GTGTGCGG CATAATTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKKGTGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5618093-5618213 3.3e-06 14_[+1]_98 chr3L:2229281-2229401 3.3e-06 1_[+1]_111 chr3L:11601287-11601407 3.3e-06 3_[+1]_109 chr2L:5037561-5037681 3.3e-06 35_[+1]_77 chrX:1794072-1794192 3.3e-06 80_[+1]_32 chr3L:19818863-19818983 3.3e-06 19_[+1]_93 chr3R:12280878-12280998 1.2e-05 10_[+1]_102 chr2L:19015846-19015966 1.2e-05 43_[+1]_69 chr3L:10724861-10724981 1.2e-05 9_[+1]_103 chr2L:5923876-5923996 1.2e-05 69_[+1]_43 chr2R:8063017-8063137 1.2e-05 65_[+1]_47 chr3L:6097419-6097539 1.2e-05 6_[+1]_106 chrX:8177898-8178018 1.2e-05 72_[+1]_40 chr3L:11602192-11602312 1.2e-05 84_[+1]_28 chr2L:4797756-4797876 1.7e-05 83_[+1]_29 chr2L:7899300-7899420 3.8e-05 52_[+1]_60 chrX:1411426-1411546 3.8e-05 85_[+1]_27 chr3R:16248290-16248410 3.8e-05 [+1]_112 chr2R:17721653-17721773 3.8e-05 52_[+1]_60 chr3L:5807510-5807630 4.8e-05 53_[+1]_59 chrX:1826145-1826265 5.5e-05 60_[+1]_52 chr2R:14975250-14975370 5.5e-05 9_[+1]_103 chr3L:18080119-18080239 5.5e-05 12_[+1]_100 chr3L:94221-94341 7.7e-05 101_[+1]_11 chr3R:31680036-31680156 9e-05 3_[+1]_109 chrX:13221402-13221522 9e-05 48_[+1]_64 chr3L:13435320-13435440 0.00012 98_[+1]_14 chr3L:16011310-16011430 0.00012 107_[+1]_5 chr3L:814021-814141 0.00012 16_[+1]_96 chr2L:452201-452321 0.00012 15_[+1]_97 chr2R:15483751-15483871 0.00013 72_[+1]_40 chrX:2648121-2648241 0.00015 77_[+1]_35 chr2L:19140401-19140521 0.00015 54_[+1]_58 chr3L:11591923-11592043 0.00015 17_[+1]_95 chr2R:24685039-24685159 0.00016 92_[+1]_20 chr2R:22242957-22243077 0.00021 20_[+1]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKKGTGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKKGTGG width=8 seqs=36 chr2L:5618093-5618213 ( 15) GGGGGTGG 1 chr3L:2229281-2229401 ( 2) GGGGGTGG 1 chr3L:11601287-11601407 ( 4) GGGGGTGG 1 chr2L:5037561-5037681 ( 36) GGGGGTGG 1 chrX:1794072-1794192 ( 81) GGGGGTGG 1 chr3L:19818863-19818983 ( 20) GGGGGTGG 1 chr3R:12280878-12280998 ( 11) GGTGGTGG 1 chr2L:19015846-19015966 ( 44) GGTGGTGG 1 chr3L:10724861-10724981 ( 10) GGTGGTGG 1 chr2L:5923876-5923996 ( 70) GGTGGTGG 1 chr2R:8063017-8063137 ( 66) GGTGGTGG 1 chr3L:6097419-6097539 ( 7) GGCGGTGG 1 chrX:8177898-8178018 ( 73) GGTGGTGG 1 chr3L:11602192-11602312 ( 85) GGCGGTGG 1 chr2L:4797756-4797876 ( 84) GGGTGTGG 1 chr2L:7899300-7899420 ( 53) GGTTGTGG 1 chrX:1411426-1411546 ( 86) GGCTGTGG 1 chr3R:16248290-16248410 ( 1) GTGGGTGG 1 chr2R:17721653-17721773 ( 53) GGCTGTGG 1 chr3L:5807510-5807630 ( 54) GGCGGCGG 1 chrX:1826145-1826265 ( 61) GGGGCTGG 1 chr2R:14975250-14975370 ( 10) GGGTGCGG 1 chr3L:18080119-18080239 ( 13) GGGTGCGG 1 chr3L:94221-94341 ( 102) GTGTGTGG 1 chr3R:31680036-31680156 ( 4) GGCAGTGG 1 chrX:13221402-13221522 ( 49) GGTAGTGG 1 chr3L:13435320-13435440 ( 99) GCGGGTGG 1 chr3L:16011310-16011430 ( 108) GGAGGTGG 1 chr3L:814021-814141 ( 17) GGTGCTGG 1 chr2L:452201-452321 ( 16) GGGTCTGG 1 chr2R:15483751-15483871 ( 73) GGGAGCGG 1 chrX:2648121-2648241 ( 78) GTTTGTGG 1 chr2L:19140401-19140521 ( 55) GTTTGTGG 1 chr3L:11591923-11592043 ( 18) GTCTGTGG 1 chr2R:24685039-24685159 ( 93) GTGAGTGG 1 chr2R:22242957-22243077 ( 21) GTGTGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKKGTGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0197 E= 1.8e-004 -1181 -1181 237 -1181 -1181 -278 200 -70 -343 3 128 -4 -143 -1181 152 8 -1181 -120 224 -1181 -1181 -46 -1181 145 -1181 -1181 237 -1181 -1181 -1181 237 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKKGTGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.8e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.027778 0.777778 0.194444 0.027778 0.194444 0.472222 0.305556 0.111111 0.000000 0.555556 0.333333 0.000000 0.083333 0.916667 0.000000 0.000000 0.138889 0.000000 0.861111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKKGTGG MEME-1 regular expression -------------------------------------------------------------------------------- GG[GT][GT]GTGG -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF SCASCCAC MEME-2 width = 8 sites = 26 llr = 236 E-value = 5.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCASCCAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::8::2a1 pos.-specific C 4a26a8:9 probability G 6::3:::: matrix T :::1:::: bits 2.4 * 2.1 * * 1.9 * * * 1.7 * * ** Relative 1.4 ** **** Entropy 1.2 ******** (13.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACCCAC consensus C CG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCASCCAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16011310-16011430 10 4.44e-06 ATCACCCTG GCACCCAC GCCCTCCATG chr2R:18375086-18375206 1 8.81e-06 . ccacccac accagccacc chr3R:19656684-19656804 66 8.81e-06 GAGGCAccac ccacccac gcgacccatc chrX:8177898-8178018 21 8.81e-06 caccaacccc ccacccac gccacTGACT chr3L:11366630-11366750 60 8.81e-06 CTGCCCCCGA CCACCCAC CGCACACCTT chr3R:16213516-16213636 89 8.81e-06 ATGCCACCAA CCACCCAC TGTTCCCTAC chr3L:13435320-13435440 4 1.16e-05 ACC GCCCCCAC GGATGGTTTT chrX:1826145-1826265 34 1.61e-05 GCCACATATC GCAGCCAC ACATACTGCA chr3L:10325405-10325525 92 1.61e-05 ACTCAACCCA GCAGCCAC CCTCCATCGC chr2L:18707961-18708081 69 1.61e-05 TAGTATTCTT GCAGCCAC CACTGTATGC chr3R:17505760-17505880 36 1.61e-05 TATTGCCCGA GCAGCCAC CCATCCACCC chr3L:14109949-14110069 91 1.89e-05 CAAACCTCAA CCCCCCAC TTAAATCACC chrX:9078428-9078548 81 2.62e-05 CAACTGCTCT GCCGCCAC TCGCTTTCAA chr2R:14494757-14494877 18 2.62e-05 ACAATCGGGT GCCGCCAC TCGAAATGAA chr3R:12280878-12280998 64 4.29e-05 AGGTCTTGCC CCACCAAC GCGAGCGAGC chr3R:6815797-6815917 96 4.29e-05 acctacacaa ccaccaac ccacctcccc chr2L:18468756-18468876 82 4.73e-05 TCTTTTTTGC GCCCCAAC TCCAACACCG chr3R:31768290-31768410 2 5.44e-05 A GCAGCAAC AGAAGACACT chrX:10210571-10210691 12 5.44e-05 TCAAACGTGG GCAGCAAC AATTACAAAA chr2L:7899300-7899420 95 6.14e-05 AAAAATAATT GCACCCAA GTGACTGCTG chr3R:31312419-31312539 16 6.14e-05 AAATCTATAC GCACCCAA ACAAACAGTT chr2L:2168679-2168799 94 7.31e-05 ACTTTCTTCC GCATCCAC GATCATAGTC chr3L:2229281-2229401 22 7.31e-05 CGCCCAACCA CCCCCAAC AGCGTGGCAG chr2L:20803734-20803854 25 8.69e-05 TGATTTTCCA CCACCCAA CGCCCACCGC chr3L:19818863-19818983 101 9.41e-05 CTTCTCGCCT CCATCCAC TCCCAATTTG chr2L:7071949-7072069 29 1.19e-04 AAAAATATTG GGACCCAC AGAAtataca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCASCCAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16011310-16011430 4.4e-06 9_[+2]_103 chr2R:18375086-18375206 8.8e-06 [+2]_112 chr3R:19656684-19656804 8.8e-06 65_[+2]_47 chrX:8177898-8178018 8.8e-06 20_[+2]_92 chr3L:11366630-11366750 8.8e-06 59_[+2]_53 chr3R:16213516-16213636 8.8e-06 88_[+2]_24 chr3L:13435320-13435440 1.2e-05 3_[+2]_109 chrX:1826145-1826265 1.6e-05 33_[+2]_79 chr3L:10325405-10325525 1.6e-05 91_[+2]_21 chr2L:18707961-18708081 1.6e-05 68_[+2]_44 chr3R:17505760-17505880 1.6e-05 35_[+2]_77 chr3L:14109949-14110069 1.9e-05 90_[+2]_22 chrX:9078428-9078548 2.6e-05 80_[+2]_32 chr2R:14494757-14494877 2.6e-05 17_[+2]_95 chr3R:12280878-12280998 4.3e-05 63_[+2]_49 chr3R:6815797-6815917 4.3e-05 95_[+2]_17 chr2L:18468756-18468876 4.7e-05 81_[+2]_31 chr3R:31768290-31768410 5.4e-05 1_[+2]_111 chrX:10210571-10210691 5.4e-05 11_[+2]_101 chr2L:7899300-7899420 6.1e-05 94_[+2]_18 chr3R:31312419-31312539 6.1e-05 15_[+2]_97 chr2L:2168679-2168799 7.3e-05 93_[+2]_19 chr3L:2229281-2229401 7.3e-05 21_[+2]_91 chr2L:20803734-20803854 8.7e-05 24_[+2]_88 chr3L:19818863-19818983 9.4e-05 100_[+2]_12 chr2L:7071949-7072069 0.00012 28_[+2]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCASCCAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCASCCAC width=8 seqs=26 chr3L:16011310-16011430 ( 10) GCACCCAC 1 chr2R:18375086-18375206 ( 1) CCACCCAC 1 chr3R:19656684-19656804 ( 66) CCACCCAC 1 chrX:8177898-8178018 ( 21) CCACCCAC 1 chr3L:11366630-11366750 ( 60) CCACCCAC 1 chr3R:16213516-16213636 ( 89) CCACCCAC 1 chr3L:13435320-13435440 ( 4) GCCCCCAC 1 chrX:1826145-1826265 ( 34) GCAGCCAC 1 chr3L:10325405-10325525 ( 92) GCAGCCAC 1 chr2L:18707961-18708081 ( 69) GCAGCCAC 1 chr3R:17505760-17505880 ( 36) GCAGCCAC 1 chr3L:14109949-14110069 ( 91) CCCCCCAC 1 chrX:9078428-9078548 ( 81) GCCGCCAC 1 chr2R:14494757-14494877 ( 18) GCCGCCAC 1 chr3R:12280878-12280998 ( 64) CCACCAAC 1 chr3R:6815797-6815917 ( 96) CCACCAAC 1 chr2L:18468756-18468876 ( 82) GCCCCAAC 1 chr3R:31768290-31768410 ( 2) GCAGCAAC 1 chrX:10210571-10210691 ( 12) GCAGCAAC 1 chr2L:7899300-7899420 ( 95) GCACCCAA 1 chr3R:31312419-31312539 ( 16) GCACCCAA 1 chr2L:2168679-2168799 ( 94) GCATCCAC 1 chr3L:2229281-2229401 ( 22) CCCCCAAC 1 chr2L:20803734-20803854 ( 25) CCACCCAA 1 chr3L:19818863-19818983 ( 101) CCATCCAC 1 chr2L:7071949-7072069 ( 29) GGACCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCASCCAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 5.4e+000 -1134 115 157 -1134 -1134 233 -233 -1134 136 27 -1134 -1134 -1134 169 67 -203 -1134 239 -1134 -1134 -38 201 -1134 -1134 174 -1134 -1134 -1134 -138 221 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCASCCAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 5.4e+000 0.000000 0.423077 0.576923 0.000000 0.000000 0.961538 0.038462 0.000000 0.769231 0.230769 0.000000 0.000000 0.000000 0.615385 0.307692 0.076923 0.000000 1.000000 0.000000 0.000000 0.230769 0.769231 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.115385 0.884615 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCASCCAC MEME-2 regular expression -------------------------------------------------------------------------------- [GC]C[AC][CG]C[CA]AC -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCAAC MEME-3 width = 8 sites = 16 llr = 158 E-value = 3.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCAAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:2198: pos.-specific C 9:a8913a probability G :9:::::: matrix T 1::::::: bits 2.4 * * 2.1 * * 1.9 * * * 1.7 ***** * Relative 1.4 ***** * Entropy 1.2 ******** (14.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCAAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2802225-2802345 42 4.44e-06 ATATAACTGG CGCCCAAC GTGGGATGTT chrX:4175976-4176096 101 4.44e-06 TTTTTTTTTT CGCCCAAC TCGACACACT chr3L:2229281-2229401 12 4.44e-06 GGGGGTGGGA CGCCCAAC CACCCCCAAC chrX:8177898-8178018 50 4.44e-06 TCTCGTCGGG CGCCCAAC ACGCGCCCTT chr3L:10325405-10325525 45 7.26e-06 CCGCAACAGC CGCCCACC CGCCAACCTC chr2L:20803734-20803854 33 7.26e-06 CACCACCCAA CGCCCACC GCACCCCTTT chr3R:17505760-17505880 16 1.01e-05 ACACACACAC CGCCCCAC TTTATTGCCC chr3R:9230357-9230477 95 1.71e-05 TCAAAAGGCC CGCACAAC CCAGAACCGT chr3L:14109949-14110069 20 1.71e-05 CCTTCACCAT CGCACAAC AATAAAAATG chr2R:11364730-11364850 44 1.89e-05 CCACTTCCCT CGCCCCCC ATCATTCCAC chr2R:18375086-18375206 15 2.57e-05 ccacaccagc cacccaac cGCCCATATC chr3R:16248290-16248410 83 2.57e-05 TATCTCACCA CACCCAAC ACGAGAAGTA chr3R:24996646-24996766 22 3.30e-05 GAAACTATTG TGCCCAAC AATCTTTCGT chrX:1411426-1411546 16 3.30e-05 ATCTCTGGGC TGCCCAAC TTTGGTTTTG chr3L:11366630-11366750 68 3.75e-05 GACCACCCAC CGCACACC TTGCCACACC chr3R:9581250-9581370 35 5.35e-05 TTTGCTCACT CGCCAAAC GGGGCTTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2802225-2802345 4.4e-06 41_[+3]_71 chrX:4175976-4176096 4.4e-06 100_[+3]_12 chr3L:2229281-2229401 4.4e-06 11_[+3]_101 chrX:8177898-8178018 4.4e-06 49_[+3]_63 chr3L:10325405-10325525 7.3e-06 44_[+3]_68 chr2L:20803734-20803854 7.3e-06 32_[+3]_80 chr3R:17505760-17505880 1e-05 15_[+3]_97 chr3R:9230357-9230477 1.7e-05 94_[+3]_18 chr3L:14109949-14110069 1.7e-05 19_[+3]_93 chr2R:11364730-11364850 1.9e-05 43_[+3]_69 chr2R:18375086-18375206 2.6e-05 14_[+3]_98 chr3R:16248290-16248410 2.6e-05 82_[+3]_30 chr3R:24996646-24996766 3.3e-05 21_[+3]_91 chrX:1411426-1411546 3.3e-05 15_[+3]_97 chr3L:11366630-11366750 3.7e-05 67_[+3]_45 chr3R:9581250-9581370 5.3e-05 34_[+3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCAAC width=8 seqs=16 chr3L:2802225-2802345 ( 42) CGCCCAAC 1 chrX:4175976-4176096 ( 101) CGCCCAAC 1 chr3L:2229281-2229401 ( 12) CGCCCAAC 1 chrX:8177898-8178018 ( 50) CGCCCAAC 1 chr3L:10325405-10325525 ( 45) CGCCCACC 1 chr2L:20803734-20803854 ( 33) CGCCCACC 1 chr3R:17505760-17505880 ( 16) CGCCCCAC 1 chr3R:9230357-9230477 ( 95) CGCACAAC 1 chr3L:14109949-14110069 ( 20) CGCACAAC 1 chr2R:11364730-11364850 ( 44) CGCCCCCC 1 chr2R:18375086-18375206 ( 15) CACCCAAC 1 chr3R:16248290-16248410 ( 83) CACCCAAC 1 chr3R:24996646-24996766 ( 22) TGCCCAAC 1 chrX:1411426-1411546 ( 16) TGCCCAAC 1 chr3L:11366630-11366750 ( 68) CGCACACC 1 chr3R:9581250-9581370 ( 35) CGCCAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 3.6e+002 -1064 219 -1064 -133 -126 -1064 217 -1064 -1064 239 -1064 -1064 -68 209 -1064 -1064 -226 229 -1064 -1064 154 -61 -1064 -1064 132 39 -1064 -1064 -1064 239 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.6e+002 0.000000 0.875000 0.000000 0.125000 0.125000 0.000000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAAC MEME-3 regular expression -------------------------------------------------------------------------------- CGCCCA[AC]C -------------------------------------------------------------------------------- Time 19.98 secs. ******************************************************************************** ******************************************************************************** MOTIF GSYGCYGC MEME-4 width = 8 sites = 25 llr = 226 E-value = 4.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSYGCYGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C 264:a5:a probability G 64:a::9: matrix T ::6::41: bits 2.4 ** * 2.1 ** * 1.9 ** * 1.7 ** ** Relative 1.4 * ** ** Entropy 1.2 * ** ** (13.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCCGC consensus AGC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGCYGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10325405-10325525 31 3.06e-06 ACACTTTCTT GCTGCCGC AACAGCCGCC chr3L:6155242-6155362 96 3.06e-06 CTCGTTTTTG GCTGCCGC ATCAACTGGG chr2R:24685039-24685159 66 3.06e-06 TTCAGAGCTC GCTGCCGC ACGACGACGA chr3L:16011310-16011430 63 4.92e-06 CCGAATTGCC GCCGCCGC CCGCTGCAAC chr3L:6097419-6097539 51 4.92e-06 CTGCGCATTA GCCGCCGC AGAAACGCAG chr3R:21599762-21599882 96 1.50e-05 GATTAAtgct gctgctgc ggctgctTCA chr2R:11364730-11364850 73 1.50e-05 AAAtgctgct gctgctgc tgccactgat chr3R:22140209-22140329 6 1.80e-05 CATTT GCCGCTGC ACTTTTTCTT chr3R:14847358-14847478 2 2.31e-05 G GGTGCTGC GAGCTCAACT chrX:2356552-2356672 105 2.31e-05 AAGCAACAGT GGTGCTGC GTTAAGTA chr2R:18583373-18583493 107 2.63e-05 ACTGTCAACT GGCGCTGC ACTTGT chr3L:2802225-2802345 92 2.63e-05 ACTTCTTTTT GGCGCTGC TTTTTATTTA chr4:505377-505497 61 2.93e-05 CACGTCCGCA CCTGCCGC CTCAAGCCTC chr3L:11366630-11366750 104 3.11e-05 ACCACCACCA CCCGCCGC CTCACCCTA chr2L:2804670-2804790 39 3.58e-05 GCTGGACTGG ACTGCCGC TGAACTTTGG chr2L:4797756-4797876 111 4.36e-05 ACCGGTTTTC CGCGCCGC TG chr3L:2229281-2229401 76 4.86e-05 AGCCCCGGCA CCTGCTGC ATCTCAAAAC chr3R:8939811-8939931 46 5.64e-05 GTTCAATGAA AGTGCCGC GTTGTCGTTG chrX:13993265-13993385 55 5.93e-05 GCAAAAGGAA AGCGCCGC TTCTTTTTGT chrX:9251399-9251519 34 8.31e-05 AGGAAATGCA GCTGCGGC CACAATAATA chrX:13245889-13246009 39 9.29e-05 AAAAACTGGG AGTGCTGC GTATGTTTGT chr2L:18344470-18344590 53 9.29e-05 TGAGATAAAT AGTGCTGC AGGATTAAGG chr3L:14109949-14110069 74 1.12e-04 gtgtgtgtgA GCTGCCCC AAACCTCAAC chr3R:28025384-28025504 81 1.24e-04 CTTGTTCGAT GGCGCCTC CCCTTTGGAT chr3L:10352257-10352377 2 1.35e-04 t gctgcttc tgctttattt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGCYGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10325405-10325525 3.1e-06 30_[+4]_82 chr3L:6155242-6155362 3.1e-06 95_[+4]_17 chr2R:24685039-24685159 3.1e-06 65_[+4]_47 chr3L:16011310-16011430 4.9e-06 62_[+4]_50 chr3L:6097419-6097539 4.9e-06 50_[+4]_62 chr3R:21599762-21599882 1.5e-05 95_[+4]_17 chr2R:11364730-11364850 1.5e-05 72_[+4]_40 chr3R:22140209-22140329 1.8e-05 5_[+4]_107 chr3R:14847358-14847478 2.3e-05 1_[+4]_111 chrX:2356552-2356672 2.3e-05 104_[+4]_8 chr2R:18583373-18583493 2.6e-05 106_[+4]_6 chr3L:2802225-2802345 2.6e-05 91_[+4]_21 chr4:505377-505497 2.9e-05 60_[+4]_52 chr3L:11366630-11366750 3.1e-05 103_[+4]_9 chr2L:2804670-2804790 3.6e-05 38_[+4]_74 chr2L:4797756-4797876 4.4e-05 110_[+4]_2 chr3L:2229281-2229401 4.9e-05 75_[+4]_37 chr3R:8939811-8939931 5.6e-05 45_[+4]_67 chrX:13993265-13993385 5.9e-05 54_[+4]_58 chrX:9251399-9251519 8.3e-05 33_[+4]_79 chrX:13245889-13246009 9.3e-05 38_[+4]_74 chr2L:18344470-18344590 9.3e-05 52_[+4]_60 chr3L:14109949-14110069 0.00011 73_[+4]_39 chr3R:28025384-28025504 0.00012 80_[+4]_32 chr3L:10352257-10352377 0.00013 1_[+4]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGCYGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSYGCYGC width=8 seqs=25 chr3L:10325405-10325525 ( 31) GCTGCCGC 1 chr3L:6155242-6155362 ( 96) GCTGCCGC 1 chr2R:24685039-24685159 ( 66) GCTGCCGC 1 chr3L:16011310-16011430 ( 63) GCCGCCGC 1 chr3L:6097419-6097539 ( 51) GCCGCCGC 1 chr3R:21599762-21599882 ( 96) GCTGCTGC 1 chr2R:11364730-11364850 ( 73) GCTGCTGC 1 chr3R:22140209-22140329 ( 6) GCCGCTGC 1 chr3R:14847358-14847478 ( 2) GGTGCTGC 1 chrX:2356552-2356672 ( 105) GGTGCTGC 1 chr2R:18583373-18583493 ( 107) GGCGCTGC 1 chr3L:2802225-2802345 ( 92) GGCGCTGC 1 chr4:505377-505497 ( 61) CCTGCCGC 1 chr3L:11366630-11366750 ( 104) CCCGCCGC 1 chr2L:2804670-2804790 ( 39) ACTGCCGC 1 chr2L:4797756-4797876 ( 111) CGCGCCGC 1 chr3L:2229281-2229401 ( 76) CCTGCTGC 1 chr3R:8939811-8939931 ( 46) AGTGCCGC 1 chrX:13993265-13993385 ( 55) AGCGCCGC 1 chrX:9251399-9251519 ( 34) GCTGCGGC 1 chrX:13245889-13246009 ( 39) AGTGCTGC 1 chr2L:18344470-18344590 ( 53) AGTGCTGC 1 chr3L:14109949-14110069 ( 74) GCTGCCCC 1 chr3R:28025384-28025504 ( 81) GGCGCCTC 1 chr3L:10352257-10352377 ( 2) GCTGCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGCYGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 4.5e+003 -58 -26 172 -1129 -1129 165 104 -1129 -1129 91 -1129 102 -1129 -1129 237 -1129 -1129 239 -1129 -1129 -1129 144 -228 48 -1129 -225 218 -198 -1129 239 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGCYGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 4.5e+003 0.200000 0.160000 0.640000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.360000 0.000000 0.640000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.520000 0.040000 0.440000 0.000000 0.040000 0.880000 0.080000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGCYGC MEME-4 regular expression -------------------------------------------------------------------------------- [GA][CG][TC]GC[CT]GC -------------------------------------------------------------------------------- Time 26.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CACWGARA MEME-5 width = 8 sites = 45 llr = 362 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACWGARA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:3:647 pos.-specific C a:a2:223 probability G ::::a25: matrix T :::6:::: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 *** * Relative 1.4 *** * Entropy 1.2 *** * (11.6 bits) 1.0 *** * * 0.7 *** * ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACTGAGA consensus A GAC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGARA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1702630-1702750 40 1.17e-05 CTTGCCGGCA CACTGAGA GAAACAAGGT chrX:13238620-13238740 2 1.17e-05 G CACTGAGA ACAAATAAGT chr3L:2549046-2549166 5 1.17e-05 CATG CACTGAGA AAAAATGGCA chr2R:9282839-9282959 12 1.17e-05 AAAAAGTTTC CACTGAGA TTTAATACCA chrX:11664185-11664305 13 1.17e-05 CCGACAGATG CACTGAGA AAAAGTACGA chr2R:14975250-14975370 34 2.67e-05 GGCTCCAAAA CACTGAGC AATTGTGATT chrX:2356552-2356672 28 2.67e-05 GGGTATCCTA CACTGGGA AAAAGATCTA chr2R:13424854-13424974 88 2.67e-05 GCGTACCTAC CACTGGGA AGCTTGGGAG chr3R:27224856-27224976 9 6.33e-05 GTACGGAA CACTGAAA GAAAATGCTA chr3L:3879017-3879137 31 6.33e-05 GTGGTTTCAG CACTGCGA CGACGCAAAC chr3L:746441-746561 3 6.33e-05 GA CACTGAAA GAAGTGGATG chr2L:18150409-18150529 8 6.33e-05 ataGGCA CACAGAGA GAAACGAGCG chr2R:12013437-12013557 52 6.33e-05 TGTAATATTC CACTGAAA GTTTATGGCT chr3L:4619885-4620005 42 6.33e-05 TTGCAGTGTC CACAGAGA AAATATTGCA chr3L:9419483-9419603 1 6.33e-05 . CACAGAGA GAAATTTTCT chrX:13221402-13221522 4 6.33e-05 GTG CACTGAAA CAAAATCCCC chr3L:11599331-11599451 65 6.33e-05 ATAGCGAGTA CACTGCGA AAAATATATA chr3L:19818863-19818983 63 7.52e-05 CCGTGCGACC CACTGGGC CACAGGCATT chr2L:5491342-5491462 11 1.17e-04 CCGGAAAATA CACTGCGC GTAAATGCAG chrX:14038153-14038273 74 1.17e-04 gaaagaaaaa cacagagc aagcaaaaac chr3L:2411063-2411183 69 1.17e-04 AGATAAATAC CACTGGAA TTACCAATTT chr2L:1486098-1486218 75 1.29e-04 TCTGTTGTGA CACTGACA CAGTTCAATT chr2L:5483211-5483331 109 1.74e-04 CATTTGAGGT CACAGAAA ACTT chr2L:20913067-20913187 16 1.74e-04 AAAAATAATG CACAGAAA TCAGAATTTA chr3L:166684-166804 8 1.74e-04 GGATGTC CACAGAAA ATGGGATTGT chrX:13568282-13568402 79 1.74e-04 TATTAATATT CACTGCAA AAAACAATAA chr3L:814021-814141 31 1.74e-04 CTGGCTTACA CACAGAAA AACAAGGCAT chr3L:21738507-21738627 6 1.74e-04 AGTTG CACAGAAA GAAAAATTTA chr3L:11591923-11592043 47 1.74e-04 TCTGCTCCAC CACTGCAA TTTGGAGCTT chr2L:608248-608368 6 2.01e-04 GCAGT CACCGAAA GAGTTTGTCA chrX:7543996-7544116 9 2.01e-04 GTTTGATG CACCGCGA AAAAAATTCT chrX:17542845-17542965 52 2.01e-04 TCTCAAAATG CACAGGGC AAAAAAAAAA chr2L:1887849-1887969 50 2.01e-04 GTATATTGCT CACCGAAA AGTAGTCATC chr2L:5249923-5250043 3 2.16e-04 TG CACTGGCA GAAATTGTAG chr3L:94221-94341 22 2.16e-04 AAAATTTGGA CACTGACC CCTAGTAACG chr3L:10724861-10724981 101 2.16e-04 ATGAGCTTGC CACTGGCA GCGATGCtgt chr3L:777401-777521 1 2.53e-04 . CACCGGGC GAAATAAGGT chr2R:22242957-22243077 71 2.53e-04 TCAGTTTCGC CACAGCGC ACAAAAAATA chr2R:20162653-20162773 49 2.53e-04 AATAATATTT CACTGCAC TGCTTAAATT chr3L:16752571-16752691 40 2.53e-04 AATCCTTCAC CACAGGAA ACACACACTT chr3L:11602192-11602312 30 2.53e-04 CTCGCTGTCA CACAGCGC GCAGGATTCG chr3L:5807510-5807630 28 2.99e-04 CTTGTTTACA CACCGAAC TAGCTGGCTC chrX:9068925-9069045 26 3.11e-04 AGATACACGA CACTGGCC TACAAAAGAA chr2L:2804670-2804790 83 3.71e-04 GATAAAACCC CACCGGCA CGACGTCAGC chrX:10581598-10581718 1 3.71e-04 . CACCGACC AGATGATACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGARA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1702630-1702750 1.2e-05 39_[+5]_73 chrX:13238620-13238740 1.2e-05 1_[+5]_111 chr3L:2549046-2549166 1.2e-05 4_[+5]_108 chr2R:9282839-9282959 1.2e-05 11_[+5]_101 chrX:11664185-11664305 1.2e-05 12_[+5]_100 chr2R:14975250-14975370 2.7e-05 33_[+5]_79 chrX:2356552-2356672 2.7e-05 27_[+5]_85 chr2R:13424854-13424974 2.7e-05 87_[+5]_25 chr3R:27224856-27224976 6.3e-05 8_[+5]_104 chr3L:3879017-3879137 6.3e-05 30_[+5]_82 chr3L:746441-746561 6.3e-05 2_[+5]_110 chr2L:18150409-18150529 6.3e-05 7_[+5]_105 chr2R:12013437-12013557 6.3e-05 51_[+5]_61 chr3L:4619885-4620005 6.3e-05 41_[+5]_71 chr3L:9419483-9419603 6.3e-05 [+5]_112 chrX:13221402-13221522 6.3e-05 3_[+5]_109 chr3L:11599331-11599451 6.3e-05 64_[+5]_48 chr3L:19818863-19818983 7.5e-05 62_[+5]_50 chr2L:5491342-5491462 0.00012 10_[+5]_102 chrX:14038153-14038273 0.00012 73_[+5]_39 chr3L:2411063-2411183 0.00012 68_[+5]_44 chr2L:1486098-1486218 0.00013 74_[+5]_38 chr2L:5483211-5483331 0.00017 108_[+5]_4 chr2L:20913067-20913187 0.00017 15_[+5]_97 chr3L:166684-166804 0.00017 7_[+5]_105 chrX:13568282-13568402 0.00017 78_[+5]_34 chr3L:814021-814141 0.00017 30_[+5]_82 chr3L:21738507-21738627 0.00017 5_[+5]_107 chr3L:11591923-11592043 0.00017 46_[+5]_66 chr2L:608248-608368 0.0002 5_[+5]_107 chrX:7543996-7544116 0.0002 8_[+5]_104 chrX:17542845-17542965 0.0002 51_[+5]_61 chr2L:1887849-1887969 0.0002 49_[+5]_63 chr2L:5249923-5250043 0.00022 2_[+5]_110 chr3L:94221-94341 0.00022 21_[+5]_91 chr3L:10724861-10724981 0.00022 100_[+5]_12 chr3L:777401-777521 0.00025 [+5]_112 chr2R:22242957-22243077 0.00025 70_[+5]_42 chr2R:20162653-20162773 0.00025 48_[+5]_64 chr3L:16752571-16752691 0.00025 39_[+5]_73 chr3L:11602192-11602312 0.00025 29_[+5]_83 chr3L:5807510-5807630 0.0003 27_[+5]_85 chrX:9068925-9069045 0.00031 25_[+5]_87 chr2L:2804670-2804790 0.00037 82_[+5]_30 chrX:10581598-10581718 0.00037 [+5]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGARA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACWGARA width=8 seqs=45 chr3L:1702630-1702750 ( 40) CACTGAGA 1 chrX:13238620-13238740 ( 2) CACTGAGA 1 chr3L:2549046-2549166 ( 5) CACTGAGA 1 chr2R:9282839-9282959 ( 12) CACTGAGA 1 chrX:11664185-11664305 ( 13) CACTGAGA 1 chr2R:14975250-14975370 ( 34) CACTGAGC 1 chrX:2356552-2356672 ( 28) CACTGGGA 1 chr2R:13424854-13424974 ( 88) CACTGGGA 1 chr3R:27224856-27224976 ( 9) CACTGAAA 1 chr3L:3879017-3879137 ( 31) CACTGCGA 1 chr3L:746441-746561 ( 3) CACTGAAA 1 chr2L:18150409-18150529 ( 8) CACAGAGA 1 chr2R:12013437-12013557 ( 52) CACTGAAA 1 chr3L:4619885-4620005 ( 42) CACAGAGA 1 chr3L:9419483-9419603 ( 1) CACAGAGA 1 chrX:13221402-13221522 ( 4) CACTGAAA 1 chr3L:11599331-11599451 ( 65) CACTGCGA 1 chr3L:19818863-19818983 ( 63) CACTGGGC 1 chr2L:5491342-5491462 ( 11) CACTGCGC 1 chrX:14038153-14038273 ( 74) CACAGAGC 1 chr3L:2411063-2411183 ( 69) CACTGGAA 1 chr2L:1486098-1486218 ( 75) CACTGACA 1 chr2L:5483211-5483331 ( 109) CACAGAAA 1 chr2L:20913067-20913187 ( 16) CACAGAAA 1 chr3L:166684-166804 ( 8) CACAGAAA 1 chrX:13568282-13568402 ( 79) CACTGCAA 1 chr3L:814021-814141 ( 31) CACAGAAA 1 chr3L:21738507-21738627 ( 6) CACAGAAA 1 chr3L:11591923-11592043 ( 47) CACTGCAA 1 chr2L:608248-608368 ( 6) CACCGAAA 1 chrX:7543996-7544116 ( 9) CACCGCGA 1 chrX:17542845-17542965 ( 52) CACAGGGC 1 chr2L:1887849-1887969 ( 50) CACCGAAA 1 chr2L:5249923-5250043 ( 3) CACTGGCA 1 chr3L:94221-94341 ( 22) CACTGACC 1 chr3L:10724861-10724981 ( 101) CACTGGCA 1 chr3L:777401-777521 ( 1) CACCGGGC 1 chr2R:22242957-22243077 ( 71) CACAGCGC 1 chr2R:20162653-20162773 ( 49) CACTGCAC 1 chr3L:16752571-16752691 ( 40) CACAGGAA 1 chr3L:11602192-11602312 ( 30) CACAGCGC 1 chr3L:5807510-5807630 ( 28) CACCGAAC 1 chrX:9068925-9069045 ( 26) CACTGGCC 1 chr2L:2804670-2804790 ( 83) CACCGGCA 1 chrX:10581598-10581718 ( 1) CACCGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGARA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3386 E= 2.1e+003 -1214 239 -1214 -1214 174 -1214 -1214 -1214 -1214 239 -1214 -1214 -5 -30 -1214 82 -1214 -1214 237 -1214 89 7 33 -1214 33 -30 127 -1214 125 60 -1214 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGARA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 2.1e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.288889 0.155556 0.000000 0.555556 0.000000 0.000000 1.000000 0.000000 0.555556 0.200000 0.244444 0.000000 0.377778 0.155556 0.466667 0.000000 0.711111 0.288889 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGARA MEME-5 regular expression -------------------------------------------------------------------------------- CAC[TA]G[AGC][GA][AC] -------------------------------------------------------------------------------- Time 32.72 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16213516-16213636 3.08e-04 88_[+2(8.81e-06)]_24 chr3L:11602192-11602312 1.81e-03 84_[+1(1.18e-05)]_3_[+1(3.81e-05)]_\ 17 chr3L:19818863-19818983 1.53e-06 19_[+1(3.26e-06)]_35_[+5(7.52e-05)]_\ 30_[+2(9.41e-05)]_12 chr2R:17721653-17721773 1.34e-01 52_[+1(3.81e-05)]_60 chr3L:11366630-11366750 6.13e-06 45_[+4(9.29e-05)]_6_[+2(8.81e-06)]_\ [+3(3.75e-05)]_28_[+4(3.11e-05)]_9 chr2R:13424854-13424974 4.82e-03 87_[+5(2.67e-05)]_25 chrX:8177898-8178018 4.31e-07 20_[+2(8.81e-06)]_21_[+3(4.44e-06)]_\ 15_[+1(1.18e-05)]_17_[+1(1.18e-05)]_15 chr3L:11591923-11592043 5.04e-03 120 chrX:1794072-1794192 1.95e-02 80_[+1(3.26e-06)]_21_[+1(3.81e-05)]_\ 3 chr3L:11599331-11599451 4.57e-02 64_[+5(6.33e-05)]_48 chr3L:2411063-2411183 3.54e-01 120 chr3R:20773345-20773465 6.57e-01 120 chr3R:13526132-13526252 1.13e-01 120 chr3R:6815797-6815917 3.58e-03 95_[+2(4.29e-05)]_17 chr3R:21089607-21089727 8.00e-02 120 chr2L:20803734-20803854 5.81e-05 32_[+3(7.26e-06)]_80 chr3R:23787456-23787576 8.21e-01 120 chrX:5301015-5301135 6.43e-01 120 chr2R:20961062-20961182 2.85e-01 120 chr2L:4797756-4797876 2.38e-03 83_[+1(1.70e-05)]_19_[+4(4.36e-05)]_\ 2 chr3R:22140209-22140329 5.31e-02 5_[+4(1.80e-05)]_107 chr3R:8038028-8038148 9.99e-01 120 chr3L:10928917-10929037 9.46e-01 120 chr2L:5037561-5037681 2.17e-02 35_[+1(3.26e-06)]_77 chr2L:19140401-19140521 5.85e-01 120 chrX:10210571-10210691 2.78e-02 11_[+2(5.44e-05)]_101 chr2L:1887849-1887969 2.97e-02 120 chrX:17542845-17542965 8.08e-02 120 chr3L:6097419-6097539 5.43e-06 6_[+1(1.18e-05)]_4_[+1(3.81e-05)]_\ 24_[+4(4.92e-06)]_62 chr3R:15631048-15631168 1.81e-01 120 chr3L:21080596-21080716 7.78e-01 120 chr3L:18080119-18080239 1.28e-02 12_[+1(5.47e-05)]_100 chr3R:30268887-30269007 3.35e-01 120 chrX:10581598-10581718 3.21e-01 120 chr2R:14111907-14112027 7.59e-02 120 chr3L:11601287-11601407 3.60e-03 3_[+1(3.26e-06)]_109 chr2L:18341072-18341192 4.22e-01 120 chr3L:10352257-10352377 2.50e-01 120 chr3R:19656684-19656804 1.67e-04 61_[+2(8.81e-06)]_51 chr3R:16248290-16248410 2.02e-03 [+1(3.81e-05)]_74_[+3(2.57e-05)]_16_\ [+1(3.81e-05)]_6 chr3R:18787370-18787490 9.93e-01 120 chr3R:17505760-17505880 7.86e-06 15_[+3(1.01e-05)]_12_[+2(1.61e-05)]_\ [+2(9.41e-05)]_69 chrX:11664185-11664305 1.10e-01 12_[+5(1.17e-05)]_100 chr2R:20065634-20065754 4.79e-01 120 chr2R:18375086-18375206 1.06e-04 [+2(8.81e-06)]_1_[+2(2.34e-05)]_103 chr3L:2229281-2229401 9.51e-08 1_[+1(3.26e-06)]_2_[+3(4.44e-06)]_2_\ [+2(7.31e-05)]_46_[+4(4.86e-05)]_37 chr2L:19193845-19193965 7.87e-01 120 chr3L:13227035-13227155 9.92e-01 120 chrX:2356552-2356672 7.26e-04 27_[+5(2.67e-05)]_69_[+4(2.31e-05)]_\ 8 chrX:1411426-1411546 8.01e-04 15_[+3(3.30e-05)]_62_[+1(3.81e-05)]_\ 27 chr2R:9557593-9557713 3.29e-01 120 chr2L:3416636-3416756 9.60e-01 120 chr2L:7897349-7897469 8.23e-01 120 chrX:6528663-6528783 4.49e-01 120 chr2L:20463497-20463617 9.88e-01 120 chr2R:8358059-8358179 8.95e-01 120 chrX:21592166-21592286 6.62e-01 120 chrX:12000341-12000461 6.70e-01 120 chrX:779517-779637 1.00e+00 120 chr2R:8063017-8063137 2.87e-02 44_[+1(1.18e-05)]_13_[+1(1.18e-05)]_\ 6_[+1(1.18e-05)]_33 chr3L:14109949-14110069 2.03e-05 19_[+3(1.71e-05)]_63_[+2(1.89e-05)]_\ 8_[+2(7.31e-05)]_6 chr2L:5923876-5923996 1.81e-03 69_[+1(1.18e-05)]_9_[+1(1.18e-05)]_\ 3_[+1(3.81e-05)]_15 chr3L:1905430-1905550 5.99e-01 120 chr3L:16974724-16974844 8.21e-01 120 chrX:17875355-17875475 6.75e-01 120 chr3L:21738507-21738627 4.69e-01 120 chr3L:731663-731783 9.97e-01 120 chr3L:12030637-12030757 9.86e-01 120 chr2R:14482474-14482594 4.20e-02 120 chr2L:20802333-20802453 4.18e-01 120 chr3L:10724861-10724981 2.89e-03 9_[+1(1.18e-05)]_103 chr2L:452201-452321 4.28e-01 120 chr2R:8307857-8307977 9.27e-01 120 chr3L:814021-814141 1.17e-02 120 chrX:3296201-3296321 9.98e-01 120 chrX:17678094-17678214 9.68e-01 120 chr2R:15483751-15483871 2.26e-01 120 chr3L:18748236-18748356 2.04e-01 120 chr2R:24685039-24685159 3.68e-05 65_[+4(3.06e-06)]_47 chr3R:27084849-27084969 9.49e-01 120 chrX:21127436-21127556 8.51e-02 20_[+3(8.50e-05)]_92 chr2R:9282839-9282959 1.31e-01 11_[+5(1.17e-05)]_101 chr3L:94221-94341 3.78e-02 101_[+1(7.71e-05)]_11 chr2L:4361641-4361761 7.27e-01 120 chrX:13568282-13568402 1.67e-01 120 chr2L:19015846-19015966 5.64e-02 43_[+1(1.18e-05)]_15_[+1(7.71e-05)]_\ 9_[+1(3.81e-05)]_29 chr3R:14356766-14356886 6.18e-01 120 chr2L:18372222-18372342 7.94e-01 120 chrX:13221402-13221522 9.31e-03 3_[+5(6.33e-05)]_37_[+1(9.02e-05)]_\ 64 chr3L:22466571-22466691 1.48e-02 120 chr3L:11596673-11596793 4.45e-01 120 chr2L:7611686-7611806 9.93e-01 120 chr2R:19985044-19985164 1.00e+00 120 chr2L:2804670-2804790 7.55e-03 38_[+4(3.58e-05)]_74 chr3R:14389392-14389512 3.18e-01 120 chr3L:2117145-2117265 7.31e-01 120 chr3L:9419483-9419603 2.04e-01 [+5(6.33e-05)]_112 chr2L:5618093-5618213 5.97e-03 14_[+1(3.26e-06)]_98 chr3L:8870705-8870825 8.97e-01 120 chr3R:29758476-29758596 9.99e-01 120 chr3R:28025384-28025504 4.98e-02 120 chr3L:13488312-13488432 1.18e-01 120 chr2L:18468756-18468876 1.20e-02 81_[+2(4.73e-05)]_31 chr3L:4383293-4383413 8.99e-01 120 chr3L:2549046-2549166 9.10e-02 4_[+5(1.17e-05)]_108 chrX:18834517-18834637 9.33e-01 120 chr3R:14007713-14007833 1.00e+00 120 chr2L:7071949-7072069 1.61e-01 120 chrX:7543996-7544116 3.15e-01 120 chr3L:20635710-20635830 8.79e-01 120 chr3L:388250-388370 1.02e-01 120 chr3R:9581250-9581370 4.59e-02 34_[+3(5.35e-05)]_78 chr2L:4071743-4071863 8.81e-01 120 chr2R:24747644-24747764 9.34e-01 120 chr2L:18344470-18344590 1.40e-01 52_[+4(9.29e-05)]_60 chrX:4175976-4176096 1.79e-03 100_[+3(4.44e-06)]_12 chr3L:2575326-2575446 9.93e-01 120 chrX:13226588-13226708 5.74e-01 120 chrX:14897714-14897834 6.23e-01 120 chr2R:13469002-13469122 8.35e-01 120 chr3L:4619885-4620005 8.55e-02 41_[+5(6.33e-05)]_71 chrX:13754595-13754715 1.88e-01 120 chrX:16966669-16966789 9.92e-01 120 chr3R:29538603-29538723 3.43e-01 120 chr3L:166684-166804 1.01e-01 120 chr3R:14390593-14390713 3.58e-01 120 chrX:21044560-21044680 9.08e-01 120 chrX:768071-768191 3.60e-01 120 chr3L:10928088-10928208 8.75e-01 120 chr3R:4687380-4687500 7.50e-01 120 chr3L:12058544-12058664 7.42e-01 120 chr3L:14622514-14622634 9.34e-01 120 chr2L:16590783-16590903 6.50e-01 120 chrX:10104609-10104729 7.21e-01 120 chr3L:4624054-4624174 7.05e-01 120 chr2R:19153422-19153542 4.48e-02 120 chrX:8891107-8891227 1.01e-01 120 chr2R:14494757-14494877 1.29e-04 14_[+4(8.03e-06)]_98 chr2R:17811102-17811222 8.47e-01 120 chr2L:7199733-7199853 9.98e-01 120 chrX:3722326-3722446 8.81e-01 120 chr3R:8939811-8939931 1.93e-02 45_[+4(5.64e-05)]_67 chrX:3289509-3289629 8.78e-01 120 chr2R:11364730-11364850 3.23e-04 19_[+3(4.19e-05)]_16_[+3(1.89e-05)]_\ 15_[+4(1.50e-05)]_1_[+4(1.50e-05)]_37 chrX:6643058-6643178 9.64e-01 120 chr3L:2802225-2802345 7.82e-05 41_[+3(4.44e-06)]_42_[+4(2.63e-05)]_\ 21 chr3L:6155242-6155362 2.30e-03 95_[+4(3.06e-06)]_17 chr2L:4055559-4055679 9.57e-01 120 chr3L:16752571-16752691 3.40e-01 120 chr3L:16011310-16011430 8.13e-07 9_[+2(4.44e-06)]_28_[+4(1.80e-05)]_\ 6_[+4(4.92e-06)]_2_[+4(5.64e-05)]_43 chr3R:12280878-12280998 3.36e-05 7_[+1(1.18e-05)]_9_[+1(1.18e-05)]_\ 31_[+2(4.29e-05)]_49 chr3L:6458084-6458204 1.36e-01 120 chr3R:31688849-31688969 8.29e-01 120 chr2L:2749539-2749659 1.05e-01 120 chr2R:11324012-11324132 5.40e-01 120 chr2R:24955699-24955819 4.70e-01 120 chrX:2334745-2334865 8.73e-02 120 chr3R:13808067-13808187 4.57e-01 120 chr3R:31312419-31312539 4.02e-02 15_[+2(6.14e-05)]_97 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************