******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7271.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:1632928-1633048 1.0000 120 chr3L:8439261-8439381 1.0000 120 chrX:5628009-5628129 1.0000 120 chrX:4349279-4349399 1.0000 120 chr2R:6608496-6608616 1.0000 120 chr3L:8939785-8939905 1.0000 120 chr2R:19660421-19660541 1.0000 120 chr2L:12363335-12363455 1.0000 120 chr3R:6857563-6857683 1.0000 120 chrX:16514685-16514805 1.0000 120 chrX:10922332-10922452 1.0000 120 chr2L:19825902-19826022 1.0000 120 chr3L:12467710-12467830 1.0000 120 chr3L:18593862-18593982 1.0000 120 chr3R:32043923-32044043 1.0000 120 chr2L:7592914-7593034 1.0000 120 chr3R:9464355-9464475 1.0000 120 chr3L:11465506-11465626 1.0000 120 chr3R:16745268-16745388 1.0000 120 chr2R:24601728-24601848 1.0000 120 chr3R:17231200-17231320 1.0000 120 chr3L:9820408-9820528 1.0000 120 chr2L:17960345-17960465 1.0000 120 chr2L:8689960-8690080 1.0000 120 chr3R:6437073-6437193 1.0000 120 chrX:13172967-13173087 1.0000 120 chr3L:15508906-15509026 1.0000 120 chr3L:14185143-14185263 1.0000 120 chr2R:19273005-19273125 1.0000 120 chr2L:4478100-4478220 1.0000 120 chr3L:18173838-18173958 1.0000 120 chr2L:6367064-6367184 1.0000 120 chr3R:9787582-9787702 1.0000 120 chr2R:11812339-11812459 1.0000 120 chr3L:22524727-22524847 1.0000 120 chr3R:5440920-5441040 1.0000 120 chr3R:26848475-26848595 1.0000 120 chrX:7296856-7296976 1.0000 120 chr3R:28886951-28887071 1.0000 120 chr2L:10336917-10337037 1.0000 120 chr3L:4432232-4432352 1.0000 120 chr3R:16921518-16921638 1.0000 120 chr2R:17896723-17896843 1.0000 120 chr3R:10352977-10353097 1.0000 120 chr2L:12616898-12617018 1.0000 120 chr2R:9505242-9505362 1.0000 120 chrX:7542742-7542862 1.0000 120 chr2R:8233630-8233750 1.0000 120 chr3L:22928155-22928275 1.0000 120 chr2L:12081243-12081363 1.0000 120 chr2L:12392534-12392654 1.0000 120 chr3L:11925531-11925651 1.0000 120 chr2L:9850923-9851043 1.0000 120 chrX:21582241-21582361 1.0000 120 chrX:17865211-17865331 1.0000 120 chr2R:19179653-19179773 1.0000 120 chrX:3504418-3504538 1.0000 120 chr3L:18551397-18551517 1.0000 120 chr2R:20896475-20896595 1.0000 120 chrX:11242588-11242708 1.0000 120 chr3L:8653779-8653899 1.0000 120 chr2R:8248179-8248299 1.0000 120 chr3R:21319135-21319255 1.0000 120 chr2L:3615316-3615436 1.0000 120 chr2L:4159726-4159846 1.0000 120 chr2R:24725698-24725818 1.0000 120 chr3R:6863861-6863981 1.0000 120 chrX:20652484-20652604 1.0000 120 chr2R:20542608-20542728 1.0000 120 chr2R:8829174-8829294 1.0000 120 chr2L:17266784-17266904 1.0000 120 chr3L:13081389-13081509 1.0000 120 chr2L:4345024-4345144 1.0000 120 chr2L:15078521-15078641 1.0000 120 chr2R:10243793-10243913 1.0000 120 chr3R:29462415-29462535 1.0000 120 chr3L:9029335-9029455 1.0000 120 chr3L:5096809-5096929 1.0000 120 chr2L:12677221-12677341 1.0000 120 chr2R:10259888-10260008 1.0000 120 chr2L:3078857-3078977 1.0000 120 chrX:14629545-14629665 1.0000 120 chr3R:6859196-6859316 1.0000 120 chr3R:16701114-16701234 1.0000 120 chr3L:3271965-3272085 1.0000 120 chr3L:15838087-15838207 1.0000 120 chr2L:19820661-19820781 1.0000 120 chr3L:7052007-7052127 1.0000 120 chrX:18138669-18138789 1.0000 120 chr2L:5866919-5867039 1.0000 120 chr3R:11395979-11396099 1.0000 120 chr2L:5474023-5474143 1.0000 120 chr3L:15223957-15224077 1.0000 120 chr2L:19458063-19458183 1.0000 120 chr3L:4432820-4432940 1.0000 120 chr3L:13378353-13378473 1.0000 120 chr2R:20471304-20471424 1.0000 120 chr3R:4348624-4348744 1.0000 120 chr3L:20694772-20694892 1.0000 120 chr3L:8670397-8670517 1.0000 120 chr3L:13305824-13305944 1.0000 120 chr3L:20623722-20623842 1.0000 120 chr3R:4849416-4849536 1.0000 120 chr3R:16855977-16856097 1.0000 120 chr2R:13623506-13623626 1.0000 120 chr3R:15654098-15654218 1.0000 120 chr3L:3522557-3522677 1.0000 120 chr3R:5125045-5125165 1.0000 120 chrX:6119976-6120096 1.0000 120 chr2R:10107586-10107706 1.0000 120 chr3L:18361538-18361658 1.0000 120 chrX:8654304-8654424 1.0000 120 chr2L:19263645-19263765 1.0000 120 chr3L:11237256-11237376 1.0000 120 chr3R:29722170-29722290 1.0000 120 chr3R:6885321-6885441 1.0000 120 chr3L:20696538-20696658 1.0000 120 chr2R:20888888-20889008 1.0000 120 chr3R:30737561-30737681 1.0000 120 chrX:14234608-14234728 1.0000 120 chr3R:6755626-6755746 1.0000 120 chr3R:18267776-18267896 1.0000 120 chr2L:8850014-8850134 1.0000 120 chr3L:16018435-16018555 1.0000 120 chr2R:18678382-18678502 1.0000 120 chr3L:1421156-1421276 1.0000 120 chr2L:14489040-14489160 1.0000 120 chr3R:16742077-16742197 1.0000 120 chr2L:18934735-18934855 1.0000 120 chrX:4135262-4135382 1.0000 120 chr2L:12466652-12466772 1.0000 120 chrX:12645559-12645679 1.0000 120 chr3L:14452676-14452796 1.0000 120 chrX:13847664-13847784 1.0000 120 chr2L:12076084-12076204 1.0000 120 chr3L:16252140-16252260 1.0000 120 chr3R:11721103-11721223 1.0000 120 chr3L:13922855-13922975 1.0000 120 chr3L:11886494-11886614 1.0000 120 chr4:942923-943043 1.0000 120 chr3L:10514930-10515050 1.0000 120 chr3L:6690001-6690121 1.0000 120 chr2L:518273-518393 1.0000 120 chr3R:16878527-16878647 1.0000 120 chr2L:1957892-1958012 1.0000 120 chr2L:8111174-8111294 1.0000 120 chr2R:10077259-10077379 1.0000 120 chr3R:23133717-23133837 1.0000 120 chrX:10243042-10243162 1.0000 120 chrX:12276721-12276841 1.0000 120 chr2L:21107754-21107874 1.0000 120 chr3R:7929328-7929448 1.0000 120 chr3L:24352761-24352881 1.0000 120 chr3R:25022480-25022600 1.0000 120 chr3R:14832431-14832551 1.0000 120 chr2L:2532038-2532158 1.0000 120 chr2L:3609359-3609479 1.0000 120 chr3R:25360893-25361013 1.0000 120 chr3R:28586327-28586447 1.0000 120 chr3R:16962390-16962510 1.0000 120 chrX:20784796-20784916 1.0000 120 chr3L:13622921-13623041 1.0000 120 chrX:10462075-10462195 1.0000 120 chr2L:19338371-19338491 1.0000 120 chr2L:9260851-9260971 1.0000 120 chr2R:9567583-9567703 1.0000 120 chr3L:11758190-11758310 1.0000 120 chr2R:14312319-14312439 1.0000 120 chr3R:6845777-6845897 1.0000 120 chrX:18301101-18301221 1.0000 120 chrX:15646948-15647068 1.0000 120 chr3L:1404699-1404819 1.0000 120 chr2L:14445755-14445875 1.0000 120 chrX:7271779-7271899 1.0000 120 chr3R:23021842-23021962 1.0000 120 chr3R:8683427-8683547 1.0000 120 chr3R:16892160-16892280 1.0000 120 chr3L:11205007-11205127 1.0000 120 chr2L:9464718-9464838 1.0000 120 chr3L:4384369-4384489 1.0000 120 chr3R:7028720-7028840 1.0000 120 chr3R:19339343-19339463 1.0000 120 chr3L:15847442-15847562 1.0000 120 chr2R:8797622-8797742 1.0000 120 chr2R:11042306-11042426 1.0000 120 chr3L:4679178-4679298 1.0000 120 chr3L:14274759-14274879 1.0000 120 chr2R:15760446-15760566 1.0000 120 chrX:15355653-15355773 1.0000 120 chr3R:25194819-25194939 1.0000 120 chrX:12273113-12273233 1.0000 120 chr3L:8671135-8671255 1.0000 120 chr3L:19349955-19350075 1.0000 120 chr3R:29463141-29463261 1.0000 120 chr2L:8633782-8633902 1.0000 120 chr3L:1859638-1859758 1.0000 120 chr3R:13972262-13972382 1.0000 120 chr2R:11084949-11085069 1.0000 120 chr3L:11516382-11516502 1.0000 120 chr2R:22874651-22874771 1.0000 120 chrX:9689286-9689406 1.0000 120 chr3L:20697438-20697558 1.0000 120 chr3R:6949462-6949582 1.0000 120 chr2L:2967053-2967173 1.0000 120 chrX:12947785-12947905 1.0000 120 chr3L:14451698-14451818 1.0000 120 chr2R:16398931-16399051 1.0000 120 chr2L:21877049-21877169 1.0000 120 chr3L:4160934-4161054 1.0000 120 chr3R:31090102-31090222 1.0000 120 chr3L:5623484-5623604 1.0000 120 chrX:9729739-9729859 1.0000 120 chrX:5679891-5680011 1.0000 120 chr2L:14442789-14442909 1.0000 120 chr2L:11344098-11344218 1.0000 120 chr3R:16865132-16865252 1.0000 120 chr3L:12857826-12857946 1.0000 120 chr3L:12118233-12118353 1.0000 120 chr3L:17419501-17419621 1.0000 120 chr3L:1576091-1576211 1.0000 120 chr3R:4458382-4458502 1.0000 120 chr3L:9021124-9021244 1.0000 120 chr2L:11075303-11075423 1.0000 120 chr3R:16028857-16028977 1.0000 120 chr2L:6367265-6367385 1.0000 120 chr2L:8165953-8166073 1.0000 120 chr2R:13532009-13532129 1.0000 120 chr3L:14961176-14961296 1.0000 120 chr3R:19011021-19011141 1.0000 120 chr3R:9879939-9880059 1.0000 120 chr3R:30851699-30851819 1.0000 120 chr2L:14635224-14635344 1.0000 120 chr3L:11450708-11450828 1.0000 120 chrX:2136209-2136329 1.0000 120 chr3R:5327926-5328046 1.0000 120 chrX:18946962-18947082 1.0000 120 chr2R:25257087-25257207 1.0000 120 chr3L:15330323-15330443 1.0000 120 chrX:7086875-7086995 1.0000 120 chr2L:3610837-3610957 1.0000 120 chrX:7324124-7324244 1.0000 120 chr2R:20081388-20081508 1.0000 120 chr3R:10053718-10053838 1.0000 120 chr2L:6373198-6373318 1.0000 120 chr2L:8276400-8276520 1.0000 120 chr2L:5724549-5724669 1.0000 120 chrX:15091352-15091472 1.0000 120 chr2R:13190090-13190210 1.0000 120 chr3L:16013260-16013380 1.0000 120 chr3L:22520143-22520263 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG7271/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7271.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.216 G 0.215 T 0.276 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.216 G 0.215 T 0.276 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGAAACGG MEME-1 width = 8 sites = 64 llr = 597 E-value = 7.9e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAACGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::aa7::: pos.-specific C ::::19:: probability G a9::2:aa matrix T :::::1:: bits 2.2 2.0 * ** 1.8 ** * ** 1.6 **** *** Relative 1.3 **** *** Entropy 1.1 **** *** (13.5 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAACGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAACGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7086875-7086995 66 1.16e-05 aaacggaaat ggaaacgg atacgaaaac chr2R:16398931-16399051 79 1.16e-05 aagcgataac ggaaacgg aagcgAAGGA chr2L:2967053-2967173 9 1.16e-05 ACGCCACC GGAAACGG AAACGTCTGC chr3L:11758190-11758310 60 1.16e-05 GCAGCAAACC GGAAACGG GCCCAAATAA chr3R:25022480-25022600 41 1.16e-05 aaactgaaac ggaaacgg aaaccgatta chr3L:11886494-11886614 64 1.16e-05 GAGCGGATAC GGAAACGG TTTGCCGTTC chrX:4135262-4135382 72 1.16e-05 cgaagggaac ggaaacgg aaatgaaaat chr2L:18934735-18934855 20 1.16e-05 CAACGGGAAC GGAAACGG AAGAGGGCCA chr2R:18678382-18678502 14 1.16e-05 CACAGGAAGC GGAAACGG CAGTGCCAAC chr3R:29722170-29722290 60 1.16e-05 aacGCAAACC GGAAACGG ACAACTGATT chr2L:5866919-5867039 56 1.16e-05 GACAGGAAGC GGAAACGG CGACATCATC chr3L:7052007-7052127 48 1.16e-05 TGCTGTAAGC GGAAACGG AAGGAAGAAG chr2L:12677221-12677341 21 1.16e-05 TCAAGGGAAG GGAAACGG AAGCGGGAAT chr3L:5096809-5096929 27 1.16e-05 TTTTATAAGC GGAAACGG ATATCGGCGA chr3R:29462415-29462535 97 1.16e-05 CGGCGAAATG GGAAACGG AAATGGCAAC chr2R:19179653-19179773 42 1.16e-05 aagcggaagc ggaaacgg caacggcata chrX:21582241-21582361 39 1.16e-05 cgcggggaac ggaaacgg aaacggGAGT chr2L:12392534-12392654 70 1.16e-05 AACTGAAACC GGAAACGG GAAATGGAGT chr2R:17896723-17896843 2 1.16e-05 C GGAAACGG AAATTGcaca chr3R:26848475-26848595 59 1.16e-05 aaccgggacc ggaaacgg aagcgACTAG chr3L:22524727-22524847 60 1.16e-05 aagccgaagc ggaaacgg aagcaaaggg chr3R:9787582-9787702 12 1.16e-05 CGAGGCAACC GGAAACGG AAGTGGCCGC chr2L:4478100-4478220 52 1.16e-05 AACGGGCGCC GGAAACGG AAATTCGCTG chr3R:17231200-17231320 34 1.16e-05 CCGCAGAAGC GGAAACGG AAATCGGAAA chr2R:24601728-24601848 35 1.16e-05 CAGAGTAACC GGAAACGG AAACGTAAAC chr3R:9464355-9464475 23 1.16e-05 TATGGTTGGc ggaaacgg aaatggaaat chr3L:12467710-12467830 56 1.16e-05 GAATGCAACC GGAAACGG AAATGGAAAC chr2L:19825902-19826022 37 1.16e-05 TGCCATTTCC ggaaacgg aagtagcagg chrX:10922332-10922452 32 1.16e-05 ACCGCTGACC GGAAACGG AAGCCAAAAA chrX:16514685-16514805 34 1.16e-05 taaacgaaac ggaaacgg aaatgttcat chrX:4349279-4349399 87 1.16e-05 aagtggaaac ggaaacgg aaGTGGCTAA chr3L:1632928-1633048 43 1.16e-05 gagcacaaac ggaaacgg aaGTAAGAAG chr3L:1859638-1859758 62 2.01e-05 CTTTTTACCA GGAAGCGG AAATGAGCCT chr3R:14832431-14832551 10 2.01e-05 CAAGCGGCA GGAAGCGG AAACGAAACC chr2L:8111174-8111294 58 2.01e-05 GAAGCAAGGC GGAAGCGG AAGTAACAGC chr2L:19263645-19263765 29 2.01e-05 GTCAGCTGGC GGAAGCGG AAATTTATGC chr2L:4159726-4159846 6 2.01e-05 CGGGC GGAAGCGG AAATGCGCAA chr2R:9505242-9505362 63 2.01e-05 TCTGAAAACC GGAAGCGG AAGTCGagga chr2R:11812339-11812459 23 2.01e-05 AAGCGAAACC GGAAGCGG AAGCCGGCGT chr3L:1576091-1576211 80 2.87e-05 CGTGGTGACC GGAACCGG AAGCAGAGCG chr3L:4160934-4161054 53 2.87e-05 GAACCCTTTT GGAACCGG CCGACGACAA chrX:20784796-20784916 59 2.87e-05 GACTCGAACC GGAACCGG AAGCGCGGTT chrX:3504418-3504538 9 2.87e-05 AGCGGCAT GGAACCGG AAATCGGATA chr3R:6437073-6437193 56 2.87e-05 aagacggacc ggaaccgg aaagagaagC chr2L:17960345-17960465 63 2.87e-05 GCGGCAAAAC GGAACCGG AAATGCCGCC chr3R:11395979-11396099 46 4.35e-05 GACGAGAACC GGAAATGG ACGATGGACA chr2L:12076084-12076204 50 8.67e-05 CAGCGGAAAG GAAAACGG AAACCGGAAG chr2L:8850014-8850134 15 8.67e-05 TTCGACAGAC GGAAACAG GAAACCGGAA chr3R:30737561-30737681 38 8.67e-05 CGGCACAGGC GGAAACAG GACGAAACAG chr3L:18551397-18551517 88 8.67e-05 ATGGAGGCTG GGAAAGGG ATAGACAGAG chr2L:12081243-12081363 15 8.67e-05 TATCCTGCAC GGAAAGGG GTTCATGTCC chr3L:15508906-15509026 57 8.67e-05 GACAGATGTG GAAAACGG ATAAGCTGTA chr2L:11075303-11075423 20 9.76e-05 ATCGAGCAGA GGAAGTGG AAATGAGCGA chr3R:25360893-25361013 31 9.76e-05 GGCAAACAGC GGAAGTGG CATTCTCCTT chr2L:2532038-2532158 94 9.76e-05 TGGCCAAAGC GGAAGTGG GTAAAGCGGA chr3R:7929328-7929448 66 9.76e-05 aaatgtgaat ggaagtgg gaatgggaag chr3R:10352977-10353097 29 1.09e-04 CTTTGCGTTG GGAATCGG TCGGCAATTC chr3R:29463141-29463261 92 1.33e-04 CGTGGGCGGG GGCAACGG AAAAGTGGGC chr3R:16855977-16856097 69 1.33e-04 CGGGCCGAAA GGAAACGA CAATTACGAG chr2R:8797622-8797742 20 1.56e-04 TTATACTTAT GCAAACGG GCGTAGCAGC chrX:12645559-12645679 37 2.02e-04 TGTTGATTTT TGAAACGG AAACAAAAAC chr3R:31090102-31090222 35 2.52e-04 TAAGAACATA GAAACCGG ATGCAAGCAG chr3R:6845777-6845897 6 2.52e-04 CACGA GGAAGCGA GAGGGCCAGA chr3L:13081389-13081509 73 2.52e-04 AGAATATACA GGAACCAG CTAAGACCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAACGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7086875-7086995 1.2e-05 65_[+1]_47 chr2R:16398931-16399051 1.2e-05 78_[+1]_34 chr2L:2967053-2967173 1.2e-05 8_[+1]_104 chr3L:11758190-11758310 1.2e-05 59_[+1]_53 chr3R:25022480-25022600 1.2e-05 40_[+1]_72 chr3L:11886494-11886614 1.2e-05 63_[+1]_49 chrX:4135262-4135382 1.2e-05 71_[+1]_41 chr2L:18934735-18934855 1.2e-05 19_[+1]_93 chr2R:18678382-18678502 1.2e-05 13_[+1]_99 chr3R:29722170-29722290 1.2e-05 59_[+1]_53 chr2L:5866919-5867039 1.2e-05 55_[+1]_57 chr3L:7052007-7052127 1.2e-05 47_[+1]_65 chr2L:12677221-12677341 1.2e-05 20_[+1]_92 chr3L:5096809-5096929 1.2e-05 26_[+1]_86 chr3R:29462415-29462535 1.2e-05 96_[+1]_16 chr2R:19179653-19179773 1.2e-05 41_[+1]_71 chrX:21582241-21582361 1.2e-05 38_[+1]_74 chr2L:12392534-12392654 1.2e-05 69_[+1]_43 chr2R:17896723-17896843 1.2e-05 1_[+1]_111 chr3R:26848475-26848595 1.2e-05 58_[+1]_54 chr3L:22524727-22524847 1.2e-05 59_[+1]_53 chr3R:9787582-9787702 1.2e-05 11_[+1]_101 chr2L:4478100-4478220 1.2e-05 51_[+1]_61 chr3R:17231200-17231320 1.2e-05 33_[+1]_79 chr2R:24601728-24601848 1.2e-05 34_[+1]_78 chr3R:9464355-9464475 1.2e-05 22_[+1]_90 chr3L:12467710-12467830 1.2e-05 55_[+1]_57 chr2L:19825902-19826022 1.2e-05 36_[+1]_76 chrX:10922332-10922452 1.2e-05 31_[+1]_81 chrX:16514685-16514805 1.2e-05 33_[+1]_79 chrX:4349279-4349399 1.2e-05 86_[+1]_26 chr3L:1632928-1633048 1.2e-05 42_[+1]_70 chr3L:1859638-1859758 2e-05 61_[+1]_51 chr3R:14832431-14832551 2e-05 9_[+1]_103 chr2L:8111174-8111294 2e-05 57_[+1]_55 chr2L:19263645-19263765 2e-05 28_[+1]_84 chr2L:4159726-4159846 2e-05 5_[+1]_107 chr2R:9505242-9505362 2e-05 62_[+1]_50 chr2R:11812339-11812459 2e-05 22_[+1]_90 chr3L:1576091-1576211 2.9e-05 79_[+1]_33 chr3L:4160934-4161054 2.9e-05 52_[+1]_60 chrX:20784796-20784916 2.9e-05 58_[+1]_54 chrX:3504418-3504538 2.9e-05 8_[+1]_104 chr3R:6437073-6437193 2.9e-05 55_[+1]_57 chr2L:17960345-17960465 2.9e-05 62_[+1]_50 chr3R:11395979-11396099 4.4e-05 45_[+1]_67 chr2L:12076084-12076204 8.7e-05 49_[+1]_63 chr2L:8850014-8850134 8.7e-05 14_[+1]_98 chr3R:30737561-30737681 8.7e-05 37_[+1]_75 chr3L:18551397-18551517 8.7e-05 87_[+1]_25 chr2L:12081243-12081363 8.7e-05 14_[+1]_98 chr3L:15508906-15509026 8.7e-05 56_[+1]_56 chr2L:11075303-11075423 9.8e-05 19_[+1]_93 chr3R:25360893-25361013 9.8e-05 30_[+1]_82 chr2L:2532038-2532158 9.8e-05 93_[+1]_19 chr3R:7929328-7929448 9.8e-05 65_[+1]_47 chr3R:10352977-10353097 0.00011 28_[+1]_84 chr3R:29463141-29463261 0.00013 91_[+1]_21 chr3R:16855977-16856097 0.00013 68_[+1]_44 chr2R:8797622-8797742 0.00016 19_[+1]_93 chrX:12645559-12645679 0.0002 36_[+1]_76 chr3R:31090102-31090222 0.00025 34_[+1]_78 chr3R:6845777-6845897 0.00025 5_[+1]_107 chr3L:13081389-13081509 0.00025 72_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAACGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAACGG width=8 seqs=64 chrX:7086875-7086995 ( 66) GGAAACGG 1 chr2R:16398931-16399051 ( 79) GGAAACGG 1 chr2L:2967053-2967173 ( 9) GGAAACGG 1 chr3L:11758190-11758310 ( 60) GGAAACGG 1 chr3R:25022480-25022600 ( 41) GGAAACGG 1 chr3L:11886494-11886614 ( 64) GGAAACGG 1 chrX:4135262-4135382 ( 72) GGAAACGG 1 chr2L:18934735-18934855 ( 20) GGAAACGG 1 chr2R:18678382-18678502 ( 14) GGAAACGG 1 chr3R:29722170-29722290 ( 60) GGAAACGG 1 chr2L:5866919-5867039 ( 56) GGAAACGG 1 chr3L:7052007-7052127 ( 48) GGAAACGG 1 chr2L:12677221-12677341 ( 21) GGAAACGG 1 chr3L:5096809-5096929 ( 27) GGAAACGG 1 chr3R:29462415-29462535 ( 97) GGAAACGG 1 chr2R:19179653-19179773 ( 42) GGAAACGG 1 chrX:21582241-21582361 ( 39) GGAAACGG 1 chr2L:12392534-12392654 ( 70) GGAAACGG 1 chr2R:17896723-17896843 ( 2) GGAAACGG 1 chr3R:26848475-26848595 ( 59) GGAAACGG 1 chr3L:22524727-22524847 ( 60) GGAAACGG 1 chr3R:9787582-9787702 ( 12) GGAAACGG 1 chr2L:4478100-4478220 ( 52) GGAAACGG 1 chr3R:17231200-17231320 ( 34) GGAAACGG 1 chr2R:24601728-24601848 ( 35) GGAAACGG 1 chr3R:9464355-9464475 ( 23) GGAAACGG 1 chr3L:12467710-12467830 ( 56) GGAAACGG 1 chr2L:19825902-19826022 ( 37) GGAAACGG 1 chrX:10922332-10922452 ( 32) GGAAACGG 1 chrX:16514685-16514805 ( 34) GGAAACGG 1 chrX:4349279-4349399 ( 87) GGAAACGG 1 chr3L:1632928-1633048 ( 43) GGAAACGG 1 chr3L:1859638-1859758 ( 62) GGAAGCGG 1 chr3R:14832431-14832551 ( 10) GGAAGCGG 1 chr2L:8111174-8111294 ( 58) GGAAGCGG 1 chr2L:19263645-19263765 ( 29) GGAAGCGG 1 chr2L:4159726-4159846 ( 6) GGAAGCGG 1 chr2R:9505242-9505362 ( 63) GGAAGCGG 1 chr2R:11812339-11812459 ( 23) GGAAGCGG 1 chr3L:1576091-1576211 ( 80) GGAACCGG 1 chr3L:4160934-4161054 ( 53) GGAACCGG 1 chrX:20784796-20784916 ( 59) GGAACCGG 1 chrX:3504418-3504538 ( 9) GGAACCGG 1 chr3R:6437073-6437193 ( 56) GGAACCGG 1 chr2L:17960345-17960465 ( 63) GGAACCGG 1 chr3R:11395979-11396099 ( 46) GGAAATGG 1 chr2L:12076084-12076204 ( 50) GAAAACGG 1 chr2L:8850014-8850134 ( 15) GGAAACAG 1 chr3R:30737561-30737681 ( 38) GGAAACAG 1 chr3L:18551397-18551517 ( 88) GGAAAGGG 1 chr2L:12081243-12081363 ( 15) GGAAAGGG 1 chr3L:15508906-15509026 ( 57) GAAAACGG 1 chr2L:11075303-11075423 ( 20) GGAAGTGG 1 chr3R:25360893-25361013 ( 31) GGAAGTGG 1 chr2L:2532038-2532158 ( 94) GGAAGTGG 1 chr3R:7929328-7929448 ( 66) GGAAGTGG 1 chr3R:10352977-10353097 ( 29) GGAATCGG 1 chr3R:29463141-29463261 ( 92) GGCAACGG 1 chr3R:16855977-16856097 ( 69) GGAAACGA 1 chr2R:8797622-8797742 ( 20) GCAAACGG 1 chrX:12645559-12645679 ( 37) TGAAACGG 1 chr3R:31090102-31090222 ( 35) GAAACCGG 1 chr3R:6845777-6845897 ( 6) GGAAGCGA 1 chr3L:13081389-13081509 ( 73) GGAACCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAACGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.52097 E= 7.9e-050 -1264 -1264 219 -414 -264 -378 212 -1264 175 -378 -1264 -1264 177 -1264 -1264 -1264 120 -79 -20 -414 -1264 205 -278 -182 -264 -1264 215 -1264 -323 -1264 217 -1264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAACGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 7.9e-050 0.000000 0.000000 0.984375 0.015625 0.046875 0.015625 0.937500 0.000000 0.984375 0.015625 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.671875 0.125000 0.187500 0.015625 0.000000 0.890625 0.031250 0.078125 0.046875 0.000000 0.953125 0.000000 0.031250 0.000000 0.968750 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAACGG MEME-1 regular expression -------------------------------------------------------------------------------- GGAAACGG -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGTTTCC MEME-2 width = 8 sites = 39 llr = 391 E-value = 4.6e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGTTTCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C a9:2::aa probability G :182:::: matrix T :::7aa:: bits 2.2 * ** 2.0 ** ** 1.8 ** **** 1.6 *** **** Relative 1.3 *** **** Entropy 1.1 *** **** (14.5 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGTTTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGTTTCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10053718-10053838 56 9.84e-06 CAAAAATAAG CCGTTTCC ACTGGATGTG chr3R:23021842-23021962 67 9.84e-06 CTCAGCACTT CCGTTTCC GGTGCGGGCG chrX:10462075-10462195 75 9.84e-06 CCTCTTCGTT CCGTTTCC GGCCTAAACG chr3L:6690001-6690121 92 9.84e-06 gttgccagca ccgtttcc gtttccgGTA chrX:13847664-13847784 41 9.84e-06 cgtaccattt ccgtttcc tccgccttcg chrX:14234608-14234728 78 9.84e-06 TACGCCATTT CCGTTTCC GGTTCAGTGA chr2L:19820661-19820781 71 9.84e-06 GCCGTGGCTT CCGTTTCC TGTTTTAATG chr2R:10259888-10260008 88 9.84e-06 ACAACCGCTT CCGTTTCC GCTTGCCCAA chr2L:15078521-15078641 89 9.84e-06 CCCTTTACTT CCGTTTCC TCTGAAAAAT chr2R:24725698-24725818 51 9.84e-06 gtctccgtct ccgtttcc gtctcgctct chr2R:20896475-20896595 76 9.84e-06 gccactgctt ccgtttcc gCCGTTCAGC chr3R:28886951-28887071 69 9.84e-06 ggttgcgtgg ccgtttcc gtttccggtt chrX:13172967-13173087 80 9.84e-06 TCCGCAATTT CCGTTTCC GGTTTCGTGC chr2L:12363335-12363455 59 9.84e-06 GGCTGCGTTT CCGTTTCC GCTTTGGTGT chr3L:8939785-8939905 85 9.84e-06 taaccgattt ccgtttcc gttCCGTGTT chr2R:6608496-6608616 101 9.84e-06 AGATCCGTTT CCGTTTCC TCTCGACTCC chrX:5628009-5628129 76 9.84e-06 cgtttcattt ccgtttcc TGTGGCCGCG chr3L:8439261-8439381 74 9.84e-06 CTCGGGACTT CCGTTTCC GGTTCctcgc chr3L:1859638-1859758 107 1.75e-05 TGTCTCGATT CCGCTTCC GTTTTC chr3L:16252140-16252260 110 1.75e-05 GGCTGCACTT CCGCTTCC GGT chr2R:10243793-10243913 93 1.75e-05 GCCAccgctt ccgcttcc gttgccgttc chr2R:8829174-8829294 98 1.75e-05 TTGACCATTT CCGCTTCC GCTTTATGGA chrX:17865211-17865331 69 1.75e-05 GCTTTCATTT CCGCTTCC TTTCCAAAAT chr3R:5440920-5441040 104 1.75e-05 TGCTGCCTTG CCGCTTCC TTTTTGGTG chr2L:8689960-8690080 31 1.75e-05 agtcccactt ccgcttcc gctcaagttg chr2R:13623506-13623626 83 2.52e-05 TTTCCGGTTT CCGGTTCC GCCGGCGCTA chr3R:29462415-29462535 73 2.52e-05 CAATGCGTTT CCGGTTCC GGTGGCCGGC chr3R:21319135-21319255 92 2.52e-05 cttcctgttt ccggttcc gcttcggtat chr3L:22928155-22928275 27 2.52e-05 GCTTCCGTAT CCGGTTCC CGCCAGCGGA chr2L:10336917-10337037 96 2.52e-05 TTTCGCGTTT CCGGTTCC GTCGACAGTA chr3L:17419501-17419621 34 3.86e-05 CGGCCATATG CCATTTCC TTTGGAAAAA chr3R:13972262-13972382 105 3.86e-05 TGGCAGTAAT CCATTTCC GTACGTTT chr2L:8633782-8633902 48 3.86e-05 ccatccgttc ccatttcc attccgttcc chr3L:15838087-15838207 56 3.86e-05 ACCGATAGCT CCATTTCC GGTCCCTTGT chr3R:16745268-16745388 61 3.86e-05 GGAAGCATTA CCATTTCC ATTCCCATTT chr2L:19825902-19826022 29 3.86e-05 CTGCAGCCTG CCATTTCC ggaaacggaa chr2R:9567583-9567703 112 5.89e-05 TGTCGAATTT CGGTTTCC G chr2L:9260851-9260971 62 5.89e-05 TCCCTCCATC CGGTTTCC GTGCGGTGTC chr3R:23133717-23133837 11 6.93e-05 TCTTATTTGC CCAGTTCC CTTTTGGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGTTTCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10053718-10053838 9.8e-06 55_[+2]_57 chr3R:23021842-23021962 9.8e-06 66_[+2]_46 chrX:10462075-10462195 9.8e-06 74_[+2]_38 chr3L:6690001-6690121 9.8e-06 91_[+2]_21 chrX:13847664-13847784 9.8e-06 40_[+2]_72 chrX:14234608-14234728 9.8e-06 77_[+2]_35 chr2L:19820661-19820781 9.8e-06 70_[+2]_42 chr2R:10259888-10260008 9.8e-06 87_[+2]_25 chr2L:15078521-15078641 9.8e-06 88_[+2]_24 chr2R:24725698-24725818 9.8e-06 50_[+2]_62 chr2R:20896475-20896595 9.8e-06 75_[+2]_37 chr3R:28886951-28887071 9.8e-06 68_[+2]_44 chrX:13172967-13173087 9.8e-06 79_[+2]_33 chr2L:12363335-12363455 9.8e-06 58_[+2]_54 chr3L:8939785-8939905 9.8e-06 84_[+2]_28 chr2R:6608496-6608616 9.8e-06 100_[+2]_12 chrX:5628009-5628129 9.8e-06 75_[+2]_37 chr3L:8439261-8439381 9.8e-06 73_[+2]_39 chr3L:1859638-1859758 1.8e-05 106_[+2]_6 chr3L:16252140-16252260 1.8e-05 109_[+2]_3 chr2R:10243793-10243913 1.8e-05 92_[+2]_20 chr2R:8829174-8829294 1.8e-05 97_[+2]_15 chrX:17865211-17865331 1.8e-05 68_[+2]_44 chr3R:5440920-5441040 1.8e-05 103_[+2]_9 chr2L:8689960-8690080 1.8e-05 30_[+2]_82 chr2R:13623506-13623626 2.5e-05 82_[+2]_30 chr3R:29462415-29462535 2.5e-05 72_[+2]_40 chr3R:21319135-21319255 2.5e-05 91_[+2]_21 chr3L:22928155-22928275 2.5e-05 26_[+2]_86 chr2L:10336917-10337037 2.5e-05 95_[+2]_17 chr3L:17419501-17419621 3.9e-05 33_[+2]_79 chr3R:13972262-13972382 3.9e-05 104_[+2]_8 chr2L:8633782-8633902 3.9e-05 47_[+2]_65 chr3L:15838087-15838207 3.9e-05 55_[+2]_57 chr3R:16745268-16745388 3.9e-05 60_[+2]_52 chr2L:19825902-19826022 3.9e-05 28_[+2]_84 chr2R:9567583-9567703 5.9e-05 111_[+2]_1 chr2L:9260851-9260971 5.9e-05 61_[+2]_51 chr3R:23133717-23133837 6.9e-05 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGTTTCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGTTTCC width=8 seqs=39 chr3R:10053718-10053838 ( 56) CCGTTTCC 1 chr3R:23021842-23021962 ( 67) CCGTTTCC 1 chrX:10462075-10462195 ( 75) CCGTTTCC 1 chr3L:6690001-6690121 ( 92) CCGTTTCC 1 chrX:13847664-13847784 ( 41) CCGTTTCC 1 chrX:14234608-14234728 ( 78) CCGTTTCC 1 chr2L:19820661-19820781 ( 71) CCGTTTCC 1 chr2R:10259888-10260008 ( 88) CCGTTTCC 1 chr2L:15078521-15078641 ( 89) CCGTTTCC 1 chr2R:24725698-24725818 ( 51) CCGTTTCC 1 chr2R:20896475-20896595 ( 76) CCGTTTCC 1 chr3R:28886951-28887071 ( 69) CCGTTTCC 1 chrX:13172967-13173087 ( 80) CCGTTTCC 1 chr2L:12363335-12363455 ( 59) CCGTTTCC 1 chr3L:8939785-8939905 ( 85) CCGTTTCC 1 chr2R:6608496-6608616 ( 101) CCGTTTCC 1 chrX:5628009-5628129 ( 76) CCGTTTCC 1 chr3L:8439261-8439381 ( 74) CCGTTTCC 1 chr3L:1859638-1859758 ( 107) CCGCTTCC 1 chr3L:16252140-16252260 ( 110) CCGCTTCC 1 chr2R:10243793-10243913 ( 93) CCGCTTCC 1 chr2R:8829174-8829294 ( 98) CCGCTTCC 1 chrX:17865211-17865331 ( 69) CCGCTTCC 1 chr3R:5440920-5441040 ( 104) CCGCTTCC 1 chr2L:8689960-8690080 ( 31) CCGCTTCC 1 chr2R:13623506-13623626 ( 83) CCGGTTCC 1 chr3R:29462415-29462535 ( 73) CCGGTTCC 1 chr3R:21319135-21319255 ( 92) CCGGTTCC 1 chr3L:22928155-22928275 ( 27) CCGGTTCC 1 chr2L:10336917-10337037 ( 96) CCGGTTCC 1 chr3L:17419501-17419621 ( 34) CCATTTCC 1 chr3R:13972262-13972382 ( 105) CCATTTCC 1 chr2L:8633782-8633902 ( 48) CCATTTCC 1 chr3L:15838087-15838207 ( 56) CCATTTCC 1 chr3R:16745268-16745388 ( 61) CCATTTCC 1 chr2L:19825902-19826022 ( 29) CCATTTCC 1 chr2R:9567583-9567703 ( 112) CGGTTTCC 1 chr2L:9260851-9260971 ( 62) CGGTTTCC 1 chr3R:23133717-23133837 ( 11) CCAGTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGTTTCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 4.6e-028 -1193 221 -1193 -1193 -1193 214 -207 -1193 -71 -1193 193 -1193 -1193 -27 -48 127 -1193 -1193 -1193 186 -1193 -1193 -1193 186 -1193 221 -1193 -1193 -1193 221 -1193 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGTTTCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 4.6e-028 0.000000 1.000000 0.000000 0.000000 0.000000 0.948718 0.051282 0.000000 0.179487 0.000000 0.820513 0.000000 0.000000 0.179487 0.153846 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGTTTCC MEME-2 regular expression -------------------------------------------------------------------------------- CCGTTTCC -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCATAAA MEME-3 width = 8 sites = 54 llr = 432 E-value = 1.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:1a1aaa pos.-specific C 179:1::: probability G 6::::::: matrix T :3::8::: bits 2.2 2.0 1.8 *** 1.6 ** *** Relative 1.3 *** *** Entropy 1.1 *** *** (11.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCATAAA consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16028857-16028977 27 2.04e-05 GTCCGTAGGG GCCATAAA AGCAGGCCAA chr2L:9464718-9464838 113 2.04e-05 TAGTGTTTTT GCCATAAA chr3R:28586327-28586447 9 2.04e-05 AATTTCGG GCCATAAA CCATAGACGC chr2L:3609359-3609479 39 2.04e-05 CATTGGCTCG GCCATAAA GCCATAAAAA chr3L:10514930-10515050 44 2.04e-05 TATGCTTAAT GCCataaa tatataaaaa chr2L:14489040-14489160 31 2.04e-05 TGACAAAGTG GCCATAAA AAATAACAAA chr2L:19263645-19263765 9 2.04e-05 TCGCTTCT GCCATAAA ACGTCAGCTG chr3L:20694772-20694892 40 2.04e-05 TTGACGTTCG GCCATAAA AACTCACGCC chr3L:13378353-13378473 35 2.04e-05 TAGTCATAAA GCCATAAA CGAGACGGGG chr2L:19458063-19458183 18 2.04e-05 GCAGTCGGTA GCCATAAA TATGTTTGCA chr2L:3615316-3615436 33 2.04e-05 GCGCACAAAG GCCATAAA ACGCGTCGCG chr3L:11925531-11925651 89 2.04e-05 CGCTTAGGCG GCCATAAA ATGGAATTGT chrX:7542742-7542862 32 2.04e-05 CTTTACGATC GCCATAAA CCAATTCGAA chr2R:19273005-19273125 92 2.04e-05 TTTCGCTAAC GCCATAAA AATCTTCGAG chr2L:11075303-11075423 74 4.65e-05 GCGAGTCGCG GTCATAAA ACTGCGTCCT chr3L:20697438-20697558 45 4.65e-05 GGCCGTGCGA GTCATAAA GTCAGGCCGT chr3R:6845777-6845897 48 4.65e-05 CCATTAAAAA GTCATAAA AATTTGTAAG chr3R:5125045-5125165 7 4.65e-05 AGGCAA GTCATAAA ATTTAATTAG chr3R:15654098-15654218 45 4.65e-05 TCTTTGCCAC GTCATAAA CCATTTGGGT chr3R:16921518-16921638 36 4.65e-05 TTATGATGTG GTCATAAA TGGTCCGCCT chr3L:18593862-18593982 88 4.65e-05 CAGCTGCGCG GTCATAAA GTTTTATTAG chr3L:8670397-8670517 74 7.43e-05 CCTAAATAAA ACCATAAA ATCCTTCTGC chr2L:17266784-17266904 20 7.43e-05 TGGGGGATTG ACCATAAA ACTATAAAAA chr3R:10352977-10353097 67 7.43e-05 CTTTTATTGC ACCATAAA GTAATTTACA chr3L:15508906-15509026 36 7.43e-05 AGCAGGTAGC ACCATAAA AGTGACAGAT chr2L:14442789-14442909 71 9.48e-05 ACAATAAAAA CCCATAAA ATATATCATA chr3L:18173838-18173958 48 9.48e-05 CATAAAACCA CCCATAAA ACGATCAGGC chr3L:13622921-13623041 15 1.16e-04 TCTGTCTGCT GCCAAAAA TAGTTATTTG chr3L:20696538-20696658 103 1.16e-04 TTTGCTCAAA GCCAAAAA GAAAGAAGGA chr3L:18361538-18361658 111 1.16e-04 TTCCATAACA GCCAAAAA GG chrX:10922332-10922452 42 1.16e-04 GGAAACGGAA GCCAAAAA TGATGAAAAA chrX:2136209-2136329 51 1.44e-04 ATGTGTGAAG GCAataaa tataaacata chr3R:4458382-4458502 76 1.44e-04 TGCTTTATTG GCAATAAA ACGGCTTAAC chr3R:6755626-6755746 111 1.44e-04 GTGAGTATGT GCAATAAA GT chr3L:3271965-3272085 25 1.44e-04 GACCAGCCCA GCAATAAA CATAGAAAGC chr3R:30851699-30851819 70 1.96e-04 ATATGGTTGC ATCATAAA AACCTAATTA chr3R:7028720-7028840 60 1.96e-04 AAACCGTACT GCCACAAA CAAGTCCGGA chrX:15646948-15647068 54 1.96e-04 AGGAGCGGGG ATCATAAA ACGCTGTCGC chr2L:12466652-12466772 81 1.96e-04 GTCCTCGACA GCCACAAA AGGTACACTC chr3R:6885321-6885441 10 1.96e-04 AGACAGTGG GCCACAAA GGATAAAGTC chr3R:6859196-6859316 75 1.96e-04 TTATTGGCAC ATCATAAA ACTATAAAAC chr2L:11344098-11344218 1 2.22e-04 . CTCATAAA TTGCATCGTT chrX:18301101-18301221 12 2.22e-04 TTATTGCCAC CTCATAAA AGTAGCATAA chr3L:3522557-3522677 69 2.22e-04 TCCTTAGACA CTCATAAA CAGTCGTCGA chr2R:8248179-8248299 100 2.22e-04 TTATGGGCCG CTCATAAA GACCGTTTGA chrX:7324124-7324244 34 2.79e-04 CCGCTTTGTT ACCAAAAA ACCATAAGTT chr3R:6949462-6949582 95 2.79e-04 TGTAGCGTTG ACCAAAAA AATTATAGTA chr3L:15847442-15847562 57 2.79e-04 acgagtatTT ACCAAAAA AGGCATAGTA chr3L:9820408-9820528 13 2.79e-04 AAAGGAAACA ACCAAAAA CAACCATACA chrX:18946962-18947082 38 3.14e-04 AGTGTATTGT GTAATAAA TATGAATCAA chr3L:14961176-14961296 30 3.14e-04 TTCAGAAATT GTAATAAA TCCAAGAACT chr2L:5474023-5474143 13 3.52e-04 TTAAGGCACT ACAATAAA GGCATTGATT chr3L:14185143-14185263 45 3.52e-04 TAAAACAATA ACAATAAA AGCGCTTGAA chrX:7296856-7296976 46 4.09e-04 TTATGGTGCG GCCGTAAA TGCAAGCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16028857-16028977 2e-05 26_[+3]_86 chr2L:9464718-9464838 2e-05 112_[+3] chr3R:28586327-28586447 2e-05 8_[+3]_104 chr2L:3609359-3609479 2e-05 38_[+3]_74 chr3L:10514930-10515050 2e-05 43_[+3]_69 chr2L:14489040-14489160 2e-05 30_[+3]_82 chr2L:19263645-19263765 2e-05 8_[+3]_104 chr3L:20694772-20694892 2e-05 39_[+3]_73 chr3L:13378353-13378473 2e-05 34_[+3]_78 chr2L:19458063-19458183 2e-05 17_[+3]_95 chr2L:3615316-3615436 2e-05 32_[+3]_80 chr3L:11925531-11925651 2e-05 88_[+3]_24 chrX:7542742-7542862 2e-05 31_[+3]_81 chr2R:19273005-19273125 2e-05 91_[+3]_21 chr2L:11075303-11075423 4.6e-05 73_[+3]_39 chr3L:20697438-20697558 4.6e-05 44_[+3]_68 chr3R:6845777-6845897 4.6e-05 47_[+3]_65 chr3R:5125045-5125165 4.6e-05 6_[+3]_106 chr3R:15654098-15654218 4.6e-05 44_[+3]_68 chr3R:16921518-16921638 4.6e-05 35_[+3]_77 chr3L:18593862-18593982 4.6e-05 87_[+3]_25 chr3L:8670397-8670517 7.4e-05 73_[+3]_39 chr2L:17266784-17266904 7.4e-05 19_[+3]_93 chr3R:10352977-10353097 7.4e-05 66_[+3]_46 chr3L:15508906-15509026 7.4e-05 35_[+3]_77 chr2L:14442789-14442909 9.5e-05 70_[+3]_42 chr3L:18173838-18173958 9.5e-05 47_[+3]_65 chr3L:13622921-13623041 0.00012 14_[+3]_98 chr3L:20696538-20696658 0.00012 102_[+3]_10 chr3L:18361538-18361658 0.00012 110_[+3]_2 chrX:10922332-10922452 0.00012 41_[+3]_71 chrX:2136209-2136329 0.00014 50_[+3]_62 chr3R:4458382-4458502 0.00014 75_[+3]_37 chr3R:6755626-6755746 0.00014 110_[+3]_2 chr3L:3271965-3272085 0.00014 24_[+3]_88 chr3R:30851699-30851819 0.0002 69_[+3]_43 chr3R:7028720-7028840 0.0002 59_[+3]_53 chrX:15646948-15647068 0.0002 53_[+3]_59 chr2L:12466652-12466772 0.0002 80_[+3]_32 chr3R:6885321-6885441 0.0002 9_[+3]_103 chr3R:6859196-6859316 0.0002 74_[+3]_38 chr2L:11344098-11344218 0.00022 [+3]_112 chrX:18301101-18301221 0.00022 11_[+3]_101 chr3L:3522557-3522677 0.00022 68_[+3]_44 chr2R:8248179-8248299 0.00022 99_[+3]_13 chrX:7324124-7324244 0.00028 33_[+3]_79 chr3R:6949462-6949582 0.00028 94_[+3]_18 chr3L:15847442-15847562 0.00028 56_[+3]_56 chr3L:9820408-9820528 0.00028 12_[+3]_100 chrX:18946962-18947082 0.00031 37_[+3]_75 chr3L:14961176-14961296 0.00031 29_[+3]_83 chr2L:5474023-5474143 0.00035 12_[+3]_100 chr3L:14185143-14185263 0.00035 44_[+3]_68 chrX:7296856-7296976 0.00041 45_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATAAA width=8 seqs=54 chr3R:16028857-16028977 ( 27) GCCATAAA 1 chr2L:9464718-9464838 ( 113) GCCATAAA 1 chr3R:28586327-28586447 ( 9) GCCATAAA 1 chr2L:3609359-3609479 ( 39) GCCATAAA 1 chr3L:10514930-10515050 ( 44) GCCATAAA 1 chr2L:14489040-14489160 ( 31) GCCATAAA 1 chr2L:19263645-19263765 ( 9) GCCATAAA 1 chr3L:20694772-20694892 ( 40) GCCATAAA 1 chr3L:13378353-13378473 ( 35) GCCATAAA 1 chr2L:19458063-19458183 ( 18) GCCATAAA 1 chr2L:3615316-3615436 ( 33) GCCATAAA 1 chr3L:11925531-11925651 ( 89) GCCATAAA 1 chrX:7542742-7542862 ( 32) GCCATAAA 1 chr2R:19273005-19273125 ( 92) GCCATAAA 1 chr2L:11075303-11075423 ( 74) GTCATAAA 1 chr3L:20697438-20697558 ( 45) GTCATAAA 1 chr3R:6845777-6845897 ( 48) GTCATAAA 1 chr3R:5125045-5125165 ( 7) GTCATAAA 1 chr3R:15654098-15654218 ( 45) GTCATAAA 1 chr3R:16921518-16921638 ( 36) GTCATAAA 1 chr3L:18593862-18593982 ( 88) GTCATAAA 1 chr3L:8670397-8670517 ( 74) ACCATAAA 1 chr2L:17266784-17266904 ( 20) ACCATAAA 1 chr3R:10352977-10353097 ( 67) ACCATAAA 1 chr3L:15508906-15509026 ( 36) ACCATAAA 1 chr2L:14442789-14442909 ( 71) CCCATAAA 1 chr3L:18173838-18173958 ( 48) CCCATAAA 1 chr3L:13622921-13623041 ( 15) GCCAAAAA 1 chr3L:20696538-20696658 ( 103) GCCAAAAA 1 chr3L:18361538-18361658 ( 111) GCCAAAAA 1 chrX:10922332-10922452 ( 42) GCCAAAAA 1 chrX:2136209-2136329 ( 51) GCAATAAA 1 chr3R:4458382-4458502 ( 76) GCAATAAA 1 chr3R:6755626-6755746 ( 111) GCAATAAA 1 chr3L:3271965-3272085 ( 25) GCAATAAA 1 chr3R:30851699-30851819 ( 70) ATCATAAA 1 chr3R:7028720-7028840 ( 60) GCCACAAA 1 chrX:15646948-15647068 ( 54) ATCATAAA 1 chr2L:12466652-12466772 ( 81) GCCACAAA 1 chr3R:6885321-6885441 ( 10) GCCACAAA 1 chr3R:6859196-6859316 ( 75) ATCATAAA 1 chr2L:11344098-11344218 ( 1) CTCATAAA 1 chrX:18301101-18301221 ( 12) CTCATAAA 1 chr3L:3522557-3522677 ( 69) CTCATAAA 1 chr2R:8248179-8248299 ( 100) CTCATAAA 1 chrX:7324124-7324244 ( 34) ACCAAAAA 1 chr3R:6949462-6949582 ( 95) ACCAAAAA 1 chr3L:15847442-15847562 ( 57) ACCAAAAA 1 chr3L:9820408-9820528 ( 13) ACCAAAAA 1 chrX:18946962-18947082 ( 38) GTAATAAA 1 chr3L:14961176-14961296 ( 30) GTAATAAA 1 chr2L:5474023-5474143 ( 13) ACAATAAA 1 chr3L:14185143-14185263 ( 45) ACAATAAA 1 chrX:7296856-7296976 ( 46) GCCGTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.59824 E= 1.8e-003 -28 -96 159 -1240 -1240 171 -1240 10 -98 198 -1240 -1240 174 -1240 -353 -1240 -98 -196 -1240 153 177 -1240 -1240 -1240 177 -1240 -1240 -1240 177 -1240 -1240 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.8e-003 0.240741 0.111111 0.648148 0.000000 0.000000 0.703704 0.000000 0.296296 0.148148 0.851852 0.000000 0.000000 0.981481 0.000000 0.018519 0.000000 0.148148 0.055556 0.000000 0.796296 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 regular expression -------------------------------------------------------------------------------- [GA][CT]CATAAA -------------------------------------------------------------------------------- Time 19.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTATGGC MEME-4 width = 8 sites = 44 llr = 371 E-value = 4.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::9::11 pos.-specific C ::::1::9 probability G :::1:78: matrix T aaa:93:: bits 2.2 2.0 1.8 ** 1.6 *** * Relative 1.3 *** **** Entropy 1.1 ******** (12.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTATGGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16892160-16892280 26 1.70e-05 GCAGCCCCTG TTTATGGC AGCCATATAA chr2L:19338371-19338491 43 1.70e-05 AAAATTAAAA TTTATGGC TAATTTGTGT chr2L:2532038-2532158 44 1.70e-05 CCATGCAAAT TTTATGGC ATACTTTTAC chr2R:10077259-10077379 47 1.70e-05 CAGCATTAGG TTTATGGC TACCCCGCTA chr3R:6755626-6755746 85 1.70e-05 CGAATCATAT TTTATGGC AGGCATGTGT chr3R:5125045-5125165 92 1.70e-05 CCTTTATTGT TTTATGGC TGTGCGAAGA chr3R:4849416-4849536 29 1.70e-05 CACCTTGGTG TTTATGGC ATGTAAATAT chr2L:5474023-5474143 44 1.70e-05 CCTAAATCTC TTTATGGC CTAGAGTGTC chr3L:9029335-9029455 48 1.70e-05 CCGCCATAAT TTTATGGC ACATCAACTG chr3L:8653779-8653899 72 1.70e-05 CGCACATTTG TTTATGGC ATGTTGTTAA chr2L:12081243-12081363 86 1.70e-05 CAAATAAAAG TTTATGGC ACCATCGTAA chr3L:15508906-15509026 90 1.70e-05 CGCGCAGATA TTTATGGC AGTCCTGAAA chr3R:16745268-16745388 76 1.70e-05 TCCATTCCCA TTTATGGC ACCAATATTT chr2L:14445755-14445875 86 3.88e-05 CCAATAAAAA TTTATTGC AGTTTGACCA chrX:18301101-18301221 1 3.88e-05 . TTTATTGC CACCTCATAA chr3R:16962390-16962510 76 3.88e-05 ACTttattgt tttattgc cattattatg chrX:10243042-10243162 6 3.88e-05 TACAT TTTATTGC GTATACGCAC chr2L:518273-518393 97 3.88e-05 GTAAAATATT TTTATTGC ACCTTCCTTT chr2L:12466652-12466772 50 3.88e-05 ATTAAATCGT TTTATTGC TCGGCAGAGT chr2L:9850923-9851043 15 3.88e-05 CCAATATATT TTTATTGC AGCCACCTGA chr3R:10352977-10353097 59 3.88e-05 GCAAGCGACT TTTATTGC ACCATAAAGT chr3L:5623484-5623604 54 6.45e-05 TGTTGCATCA TTTGTGGC AAACTGCGAT chr3L:1859638-1859758 19 6.45e-05 TATTCTAGAA TTTGTGGC TCTCTCTGCA chr3L:22928155-22928275 7 6.45e-05 GCCACT TTTACGGC ACGCTTCCGT chrX:7296856-7296976 68 6.45e-05 AGCCAAGTTC TTTACGGC TTCTCTGGCA chr2L:14489040-14489160 11 8.76e-05 GAGCAGCGAA TTTATGAC GCTGACAAAG chr3R:6885321-6885441 95 8.76e-05 AGAGTGAAGT TTTATGAC GGTCAGTGTC chr3R:16701114-16701234 41 8.76e-05 CATTGTACTT TTTATGAC CTCGTAAAAA chr2L:12616898-12617018 48 8.76e-05 TTTTCGACTT TTTATGAC TTTGTAACAA chr3L:12857826-12857946 67 1.11e-04 TGGAATTCTT TTTATGGA TTCCTTTTAC chr3L:11237256-11237376 80 1.11e-04 TTTTCATGTT TTTATGGA TTTATGTTGG chr3L:13305824-13305944 68 1.11e-04 CGGATATCCG TTTATGGA GCGGATGTTG chr2R:8829174-8829294 108 1.11e-04 CCGCTTCCGC TTTATGGA CTTAA chr2L:15078521-15078641 45 1.24e-04 TGTTGCATAC TTCATGGC GCTTAAGTGC chrX:5628009-5628129 97 1.24e-04 GGCCGCGTTC TTCATGGC ATTGCATCAT chr3L:7052007-7052127 33 1.57e-04 ATTTAGAAAA TTTACTGC TGTAAGCGGA chr3L:15838087-15838207 29 1.57e-04 GCTTCGATAT TTTGTTGC AACTGCCCGA chr2L:8165953-8166073 96 1.99e-04 ACTTTTCGGT TTTCTGGC CAGAACACCT chr3R:29722170-29722290 106 1.99e-04 CACACACGTA TTTATTAC CATTTCG chr2R:8233630-8233750 30 1.99e-04 TTCAGGCAAA TTTATTAC TTTACGATGT chr2L:1957892-1958012 21 2.39e-04 TAGATACAAC TTTATTGA ATAGCTAAAA chr3R:30737561-30737681 24 2.39e-04 GTTGCATACT TTTGCGGC ACAGGCGGAA chr2L:3078857-3078977 82 2.39e-04 CATGTTTGCA TTTGCGGC CTGACCGGTA chr3R:6863861-6863981 61 3.12e-04 GTTTACAGTT TTTATGTC TTTATGATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16892160-16892280 1.7e-05 25_[+4]_87 chr2L:19338371-19338491 1.7e-05 42_[+4]_70 chr2L:2532038-2532158 1.7e-05 43_[+4]_69 chr2R:10077259-10077379 1.7e-05 46_[+4]_66 chr3R:6755626-6755746 1.7e-05 84_[+4]_28 chr3R:5125045-5125165 1.7e-05 91_[+4]_21 chr3R:4849416-4849536 1.7e-05 28_[+4]_84 chr2L:5474023-5474143 1.7e-05 43_[+4]_69 chr3L:9029335-9029455 1.7e-05 47_[+4]_65 chr3L:8653779-8653899 1.7e-05 71_[+4]_41 chr2L:12081243-12081363 1.7e-05 85_[+4]_27 chr3L:15508906-15509026 1.7e-05 89_[+4]_23 chr3R:16745268-16745388 1.7e-05 75_[+4]_37 chr2L:14445755-14445875 3.9e-05 85_[+4]_27 chrX:18301101-18301221 3.9e-05 [+4]_112 chr3R:16962390-16962510 3.9e-05 75_[+4]_37 chrX:10243042-10243162 3.9e-05 5_[+4]_107 chr2L:518273-518393 3.9e-05 96_[+4]_16 chr2L:12466652-12466772 3.9e-05 49_[+4]_63 chr2L:9850923-9851043 3.9e-05 14_[+4]_98 chr3R:10352977-10353097 3.9e-05 58_[+4]_54 chr3L:5623484-5623604 6.5e-05 53_[+4]_59 chr3L:1859638-1859758 6.5e-05 18_[+4]_94 chr3L:22928155-22928275 6.5e-05 6_[+4]_106 chrX:7296856-7296976 6.5e-05 67_[+4]_45 chr2L:14489040-14489160 8.8e-05 10_[+4]_102 chr3R:6885321-6885441 8.8e-05 94_[+4]_18 chr3R:16701114-16701234 8.8e-05 40_[+4]_72 chr2L:12616898-12617018 8.8e-05 47_[+4]_65 chr3L:12857826-12857946 0.00011 66_[+4]_46 chr3L:11237256-11237376 0.00011 79_[+4]_33 chr3L:13305824-13305944 0.00011 67_[+4]_45 chr2R:8829174-8829294 0.00011 107_[+4]_5 chr2L:15078521-15078641 0.00012 44_[+4]_68 chrX:5628009-5628129 0.00012 96_[+4]_16 chr3L:7052007-7052127 0.00016 32_[+4]_80 chr3L:15838087-15838207 0.00016 28_[+4]_84 chr2L:8165953-8166073 0.0002 95_[+4]_17 chr3R:29722170-29722290 0.0002 105_[+4]_7 chr2R:8233630-8233750 0.0002 29_[+4]_83 chr2L:1957892-1958012 0.00024 20_[+4]_92 chr3R:30737561-30737681 0.00024 23_[+4]_89 chr2L:3078857-3078977 0.00024 81_[+4]_31 chr3R:6863861-6863981 0.00031 60_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATGGC width=8 seqs=44 chr3R:16892160-16892280 ( 26) TTTATGGC 1 chr2L:19338371-19338491 ( 43) TTTATGGC 1 chr2L:2532038-2532158 ( 44) TTTATGGC 1 chr2R:10077259-10077379 ( 47) TTTATGGC 1 chr3R:6755626-6755746 ( 85) TTTATGGC 1 chr3R:5125045-5125165 ( 92) TTTATGGC 1 chr3R:4849416-4849536 ( 29) TTTATGGC 1 chr2L:5474023-5474143 ( 44) TTTATGGC 1 chr3L:9029335-9029455 ( 48) TTTATGGC 1 chr3L:8653779-8653899 ( 72) TTTATGGC 1 chr2L:12081243-12081363 ( 86) TTTATGGC 1 chr3L:15508906-15509026 ( 90) TTTATGGC 1 chr3R:16745268-16745388 ( 76) TTTATGGC 1 chr2L:14445755-14445875 ( 86) TTTATTGC 1 chrX:18301101-18301221 ( 1) TTTATTGC 1 chr3R:16962390-16962510 ( 76) TTTATTGC 1 chrX:10243042-10243162 ( 6) TTTATTGC 1 chr2L:518273-518393 ( 97) TTTATTGC 1 chr2L:12466652-12466772 ( 50) TTTATTGC 1 chr2L:9850923-9851043 ( 15) TTTATTGC 1 chr3R:10352977-10353097 ( 59) TTTATTGC 1 chr3L:5623484-5623604 ( 54) TTTGTGGC 1 chr3L:1859638-1859758 ( 19) TTTGTGGC 1 chr3L:22928155-22928275 ( 7) TTTACGGC 1 chrX:7296856-7296976 ( 68) TTTACGGC 1 chr2L:14489040-14489160 ( 11) TTTATGAC 1 chr3R:6885321-6885441 ( 95) TTTATGAC 1 chr3R:16701114-16701234 ( 41) TTTATGAC 1 chr2L:12616898-12617018 ( 48) TTTATGAC 1 chr3L:12857826-12857946 ( 67) TTTATGGA 1 chr3L:11237256-11237376 ( 80) TTTATGGA 1 chr3L:13305824-13305944 ( 68) TTTATGGA 1 chr2R:8829174-8829294 ( 108) TTTATGGA 1 chr2L:15078521-15078641 ( 45) TTCATGGC 1 chrX:5628009-5628129 ( 97) TTCATGGC 1 chr3L:7052007-7052127 ( 33) TTTACTGC 1 chr3L:15838087-15838207 ( 29) TTTGTTGC 1 chr2L:8165953-8166073 ( 96) TTTCTGGC 1 chr3R:29722170-29722290 ( 106) TTTATTAC 1 chr2R:8233630-8233750 ( 30) TTTATTAC 1 chr2L:1957892-1958012 ( 21) TTTATTGA 1 chr3R:30737561-30737681 ( 24) TTTGCGGC 1 chr2L:3078857-3078977 ( 82) TTTGCGGC 1 chr3R:6863861-6863981 ( 61) TTTATGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.67987 E= 4.8e-005 -1210 -1210 -1210 186 -1210 -1210 -1210 186 -1210 -225 -1210 179 156 -324 -92 -1210 -1210 -92 -1210 168 -1210 -1210 171 10 -110 -1210 197 -360 -137 204 -1210 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 4.8e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.045455 0.000000 0.954545 0.863636 0.022727 0.113636 0.000000 0.000000 0.113636 0.000000 0.886364 0.000000 0.000000 0.704545 0.295455 0.136364 0.000000 0.840909 0.022727 0.113636 0.886364 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 regular expression -------------------------------------------------------------------------------- TTTAT[GT]GC -------------------------------------------------------------------------------- Time 26.01 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCCGKT MEME-5 width = 8 sites = 46 llr = 387 E-value = 3.0e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCGKT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2::9a::: probability G ::2::84: matrix T 8a81:25a bits 2.2 * 2.0 * 1.8 * ** * 1.6 * ** * Relative 1.3 ***** * Entropy 1.1 ****** * (12.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCGTT consensus C TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGKT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12857826-12857946 111 1.25e-05 ATAAACGAAA TTTCCGGT AG chr3R:29463141-29463261 50 1.25e-05 AGAGTTTTCA TTTCCGGT TTGGCACGCA chrX:14234608-14234728 54 1.25e-05 GATTGTCCCA TTTCCGGT TTCAATTACG chr2R:13623506-13623626 73 1.25e-05 GTGCGCGCAA TTTCCGGT TTCCGGTTCC chr3R:28886951-28887071 78 1.25e-05 gccgtttccg tttccggt tccCTAGCTG chr3R:32043923-32044043 88 1.25e-05 GCGCAGCTTG TTTCCGGT CCAACAGACC chr2L:2532038-2532158 67 2.86e-05 TTTACGGGCA TTTCCGTT TTGTAAGCAT chr3R:18267776-18267896 84 2.86e-05 TTCTATTCGA TTTCCGTT ACTGCCGTTG chr2R:24725698-24725818 84 2.86e-05 tctgtgtcta tttccgtt tcCGCTCCGG chr3R:21319135-21319255 109 2.86e-05 cgcttcggta tttccgtt tcAC chr2R:20896475-20896595 58 2.86e-05 gttgttgccg tttccgtt gccactgctt chrX:5628009-5628129 38 2.86e-05 TCGAAtttcg tttccgtt tccgggctgt chr3R:25360893-25361013 46 3.84e-05 TGGCATTCTC CTTCCGGT TGCCACTTTC chrX:11242588-11242708 51 3.84e-05 TCTCAACACA CTTCCGGT CCACTGCTTT chr2L:9850923-9851043 69 3.84e-05 CATTTGTGCA CTTCCGGT TGCGCTCAAA chr3R:5440920-5441040 65 3.84e-05 GCCACTTCCG CTTCCGGT GGCCTTCCTA chr2R:24601728-24601848 13 3.84e-05 AAATGTAGCT CTTCCGGT CAGCCAGAGT chr2L:8633782-8633902 75 5.09e-05 cacccgcgcg cttccgtt ccattccatg chr2R:9567583-9567703 82 5.09e-05 TAAAATATCG CTTCCGTT CGTTTAAATA chrX:13847664-13847784 21 5.09e-05 tctgtttccg cttccgtt cccgtaccat chr3L:4432232-4432352 109 5.09e-05 TGTGTACACT CTTCCGTT GTTT chr3R:16855977-16856097 111 6.70e-05 CTTTTCTGCT TTTCCTGT CT chr3L:18551397-18551517 34 6.70e-05 TGGCTGCTCA TTTCCTGT GCGCACAGCG chr2L:12392534-12392654 96 6.70e-05 GTCTTTTTCA TTTCCTGT TTCCTTCCGC chrX:18301101-18301221 72 9.74e-05 AGTTAGTTAT TTTCCTTT TTGCCTGCCG chr3L:16018435-16018555 63 9.74e-05 ATTTGATACA TTTCCTTT CAAATACTCC chr3L:11237256-11237376 65 9.74e-05 TCTCGCTCGT TTTCCTTT TCATGTTTTT chr2R:10107586-10107706 56 9.74e-05 TAAGCAAATG TTTCCTTT TTGACTATGC chr2R:8233630-8233750 12 9.74e-05 CCCGGCAGAT TTTCCTTT TTCAGGCAAA chr2L:7592914-7593034 78 9.74e-05 GTTCGAGAGT TTTCCTTT TAGCCGTGGC chr3L:18593862-18593982 10 9.74e-05 CTTGTGGAT TTTCCTTT TACCTAATCC chr3R:23021842-23021962 112 1.10e-04 TAtgttgctg ttgccgtt g chr3L:11886494-11886614 73 1.10e-04 CGGAAACGGT TTGCCGTT CGCCCCGTCT chr2L:19820661-19820781 45 1.10e-04 GAATGTCGGT TTGCCGTT TTGGCACCGC chr2R:10243793-10243913 102 1.10e-04 tccgcttccg ttgccgtt cctgtttccg chr3L:8939785-8939905 61 1.10e-04 cattgaccga ttgccgtt taccgctaac chr3L:1632928-1633048 107 1.10e-04 CATTGATATG TTGCCGTT TTTTCG chr3R:10053718-10053838 32 1.35e-04 CGAAAACATA TTTCCGCT TTCAGGCAAA chrX:12273113-12273233 74 1.35e-04 AGCGACTGCA TTTCCGCT TAATGTTGAG chr2L:518273-518393 107 1.59e-04 TTTATTGCAC CTTCCTTT TATGAT chr3R:6857563-6857683 87 1.59e-04 TTTATTGAGG CTGCCGGT GGTCGTAGGA chr3R:9879939-9880059 58 1.85e-04 CCCGTCTCTT TTTTCGGT GCATTGCTAT chr2L:8165953-8166073 88 1.85e-04 CTTGCCCAAC TTTTCGGT TTTCTGGCCA chr3L:11516382-11516502 40 1.85e-04 TCTTTCAATA TTTTCGGT GTAATTATTG chrX:6119976-6120096 111 1.85e-04 TTTTTTTTCT TTTTCGGT TT chr2L:4478100-4478220 75 2.66e-04 CGCTGCATAG TTTCCGGC GCGTTGACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGKT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12857826-12857946 1.3e-05 110_[+5]_2 chr3R:29463141-29463261 1.3e-05 49_[+5]_63 chrX:14234608-14234728 1.3e-05 53_[+5]_59 chr2R:13623506-13623626 1.3e-05 72_[+5]_40 chr3R:28886951-28887071 1.3e-05 77_[+5]_35 chr3R:32043923-32044043 1.3e-05 87_[+5]_25 chr2L:2532038-2532158 2.9e-05 66_[+5]_46 chr3R:18267776-18267896 2.9e-05 83_[+5]_29 chr2R:24725698-24725818 2.9e-05 83_[+5]_29 chr3R:21319135-21319255 2.9e-05 108_[+5]_4 chr2R:20896475-20896595 2.9e-05 57_[+5]_55 chrX:5628009-5628129 2.9e-05 37_[+5]_75 chr3R:25360893-25361013 3.8e-05 45_[+5]_67 chrX:11242588-11242708 3.8e-05 50_[+5]_62 chr2L:9850923-9851043 3.8e-05 68_[+5]_44 chr3R:5440920-5441040 3.8e-05 64_[+5]_48 chr2R:24601728-24601848 3.8e-05 12_[+5]_100 chr2L:8633782-8633902 5.1e-05 74_[+5]_38 chr2R:9567583-9567703 5.1e-05 81_[+5]_31 chrX:13847664-13847784 5.1e-05 20_[+5]_92 chr3L:4432232-4432352 5.1e-05 108_[+5]_4 chr3R:16855977-16856097 6.7e-05 110_[+5]_2 chr3L:18551397-18551517 6.7e-05 33_[+5]_79 chr2L:12392534-12392654 6.7e-05 95_[+5]_17 chrX:18301101-18301221 9.7e-05 71_[+5]_41 chr3L:16018435-16018555 9.7e-05 62_[+5]_50 chr3L:11237256-11237376 9.7e-05 64_[+5]_48 chr2R:10107586-10107706 9.7e-05 55_[+5]_57 chr2R:8233630-8233750 9.7e-05 11_[+5]_101 chr2L:7592914-7593034 9.7e-05 77_[+5]_35 chr3L:18593862-18593982 9.7e-05 9_[+5]_103 chr3R:23021842-23021962 0.00011 111_[+5]_1 chr3L:11886494-11886614 0.00011 72_[+5]_40 chr2L:19820661-19820781 0.00011 44_[+5]_68 chr2R:10243793-10243913 0.00011 101_[+5]_11 chr3L:8939785-8939905 0.00011 60_[+5]_52 chr3L:1632928-1633048 0.00011 106_[+5]_6 chr3R:10053718-10053838 0.00014 31_[+5]_81 chrX:12273113-12273233 0.00014 73_[+5]_39 chr2L:518273-518393 0.00016 106_[+5]_6 chr3R:6857563-6857683 0.00016 86_[+5]_26 chr3R:9879939-9880059 0.00018 57_[+5]_55 chr2L:8165953-8166073 0.00018 87_[+5]_25 chr3L:11516382-11516502 0.00018 39_[+5]_73 chrX:6119976-6120096 0.00018 110_[+5]_2 chr2L:4478100-4478220 0.00027 74_[+5]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGKT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCGKT width=8 seqs=46 chr3L:12857826-12857946 ( 111) TTTCCGGT 1 chr3R:29463141-29463261 ( 50) TTTCCGGT 1 chrX:14234608-14234728 ( 54) TTTCCGGT 1 chr2R:13623506-13623626 ( 73) TTTCCGGT 1 chr3R:28886951-28887071 ( 78) TTTCCGGT 1 chr3R:32043923-32044043 ( 88) TTTCCGGT 1 chr2L:2532038-2532158 ( 67) TTTCCGTT 1 chr3R:18267776-18267896 ( 84) TTTCCGTT 1 chr2R:24725698-24725818 ( 84) TTTCCGTT 1 chr3R:21319135-21319255 ( 109) TTTCCGTT 1 chr2R:20896475-20896595 ( 58) TTTCCGTT 1 chrX:5628009-5628129 ( 38) TTTCCGTT 1 chr3R:25360893-25361013 ( 46) CTTCCGGT 1 chrX:11242588-11242708 ( 51) CTTCCGGT 1 chr2L:9850923-9851043 ( 69) CTTCCGGT 1 chr3R:5440920-5441040 ( 65) CTTCCGGT 1 chr2R:24601728-24601848 ( 13) CTTCCGGT 1 chr2L:8633782-8633902 ( 75) CTTCCGTT 1 chr2R:9567583-9567703 ( 82) CTTCCGTT 1 chrX:13847664-13847784 ( 21) CTTCCGTT 1 chr3L:4432232-4432352 ( 109) CTTCCGTT 1 chr3R:16855977-16856097 ( 111) TTTCCTGT 1 chr3L:18551397-18551517 ( 34) TTTCCTGT 1 chr2L:12392534-12392654 ( 96) TTTCCTGT 1 chrX:18301101-18301221 ( 72) TTTCCTTT 1 chr3L:16018435-16018555 ( 63) TTTCCTTT 1 chr3L:11237256-11237376 ( 65) TTTCCTTT 1 chr2R:10107586-10107706 ( 56) TTTCCTTT 1 chr2R:8233630-8233750 ( 12) TTTCCTTT 1 chr2L:7592914-7593034 ( 78) TTTCCTTT 1 chr3L:18593862-18593982 ( 10) TTTCCTTT 1 chr3R:23021842-23021962 ( 112) TTGCCGTT 1 chr3L:11886494-11886614 ( 73) TTGCCGTT 1 chr2L:19820661-19820781 ( 45) TTGCCGTT 1 chr2R:10243793-10243913 ( 102) TTGCCGTT 1 chr3L:8939785-8939905 ( 61) TTGCCGTT 1 chr3L:1632928-1633048 ( 107) TTGCCGTT 1 chr3R:10053718-10053838 ( 32) TTTCCGCT 1 chrX:12273113-12273233 ( 74) TTTCCGCT 1 chr2L:518273-518393 ( 107) CTTCCTTT 1 chr3R:6857563-6857683 ( 87) CTGCCGGT 1 chr3R:9879939-9880059 ( 58) TTTTCGGT 1 chr2L:8165953-8166073 ( 88) TTTTCGGT 1 chr3L:11516382-11516502 ( 40) TTTTCGGT 1 chrX:6119976-6120096 ( 111) TTTTCGGT 1 chr2L:4478100-4478220 ( 75) TTTCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGKT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.66317 E= 3.0e-005 -1217 15 -1217 146 -1217 -1217 -1217 186 -1217 -1217 -50 162 -1217 208 -1217 -167 -1217 221 -1217 -1217 -1217 -1217 182 -21 -1217 -231 102 92 -1217 -331 -1217 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGKT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.0e-005 0.000000 0.239130 0.000000 0.760870 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.152174 0.847826 0.000000 0.913043 0.000000 0.086957 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.760870 0.239130 0.000000 0.043478 0.434783 0.521739 0.000000 0.021739 0.000000 0.978261 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCGKT MEME-5 regular expression -------------------------------------------------------------------------------- [TC]TTCC[GT][TG]T -------------------------------------------------------------------------------- Time 31.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1632928-1633048 2.70e-03 18_[+1(1.16e-05)]_16_[+1(1.16e-05)]_\ 70 chr3L:8439261-8439381 5.50e-04 73_[+2(9.84e-06)]_39 chrX:5628009-5628129 1.78e-04 40_[+2(9.84e-06)]_27_[+2(9.84e-06)]_\ 37 chrX:4349279-4349399 1.46e-01 38_[+1(1.16e-05)]_16_[+1(8.67e-05)]_\ 10_[+1(1.16e-05)]_4_[+1(9.76e-05)]_20 chr2R:6608496-6608616 1.26e-04 94_[+2(9.84e-06)]_18 chr3L:8939785-8939905 4.37e-04 84_[+2(9.84e-06)]_28 chr2R:19660421-19660541 2.57e-01 120 chr2L:12363335-12363455 9.68e-04 58_[+2(9.84e-06)]_54 chr3R:6857563-6857683 9.61e-03 120 chrX:16514685-16514805 1.39e-02 33_[+1(1.16e-05)]_10_[+1(1.16e-05)]_\ 61 chrX:10922332-10922452 3.60e-03 31_[+1(1.16e-05)]_81 chr2L:19825902-19826022 3.45e-04 28_[+2(3.86e-05)]_[+1(1.16e-05)]_76 chr3L:12467710-12467830 7.22e-02 55_[+1(1.16e-05)]_57 chr3L:18593862-18593982 5.96e-03 9_[+5(9.74e-05)]_70_[+3(4.65e-05)]_\ 25 chr3R:32043923-32044043 2.33e-03 87_[+5(1.25e-05)]_25 chr2L:7592914-7593034 6.69e-02 77_[+5(9.74e-05)]_35 chr3R:9464355-9464475 1.50e-01 22_[+1(1.16e-05)]_22_[+1(1.16e-05)]_\ 10_[+1(8.67e-05)]_42 chr3L:11465506-11465626 9.03e-01 120 chr3R:16745268-16745388 5.75e-04 60_[+2(3.86e-05)]_7_[+4(1.70e-05)]_\ 10_[+4(8.76e-05)]_19 chr2R:24601728-24601848 3.00e-03 12_[+5(3.84e-05)]_14_[+1(1.16e-05)]_\ 78 chr3R:17231200-17231320 3.00e-02 33_[+1(1.16e-05)]_79 chr3L:9820408-9820528 2.06e-01 120 chr2L:17960345-17960465 1.29e-01 62_[+1(2.87e-05)]_50 chr2L:8689960-8690080 1.79e-02 30_[+2(1.75e-05)]_82 chr3R:6437073-6437193 4.96e-03 55_[+1(2.87e-05)]_57 chrX:13172967-13173087 1.06e-03 79_[+2(9.84e-06)]_33 chr3L:15508906-15509026 8.26e-05 35_[+3(7.43e-05)]_13_[+1(8.67e-05)]_\ 25_[+4(1.70e-05)]_23 chr3L:14185143-14185263 3.53e-01 120 chr2R:19273005-19273125 3.59e-03 50_[+3(2.04e-05)]_[+3(9.48e-05)]_25_\ [+3(2.04e-05)]_21 chr2L:4478100-4478220 1.10e-03 51_[+1(1.16e-05)]_61 chr3L:18173838-18173958 4.19e-02 47_[+3(9.48e-05)]_65 chr2L:6367064-6367184 1.28e-01 120 chr3R:9787582-9787702 5.79e-03 11_[+1(1.16e-05)]_101 chr2R:11812339-11812459 1.84e-01 22_[+1(2.01e-05)]_90 chr3L:22524727-22524847 1.05e-02 59_[+1(1.16e-05)]_53 chr3R:5440920-5441040 9.95e-04 61_[+2(1.75e-05)]_34_[+2(1.75e-05)]_\ 9 chr3R:26848475-26848595 5.28e-02 40_[+1(2.01e-05)]_10_[+1(1.16e-05)]_\ 54 chrX:7296856-7296976 1.95e-02 67_[+4(6.45e-05)]_45 chr3R:28886951-28887071 3.50e-04 50_[+2(2.52e-05)]_10_[+2(9.84e-06)]_\ 1_[+5(1.25e-05)]_35 chr2L:10336917-10337037 2.34e-04 92_[+5(1.25e-05)]_20 chr3L:4432232-4432352 1.69e-02 108_[+5(5.09e-05)]_4 chr3R:16921518-16921638 5.40e-02 35_[+3(4.65e-05)]_77 chr2R:17896723-17896843 2.72e-02 1_[+1(1.16e-05)]_111 chr3R:10352977-10353097 2.65e-04 58_[+4(3.88e-05)]_[+3(7.43e-05)]_46 chr2L:12616898-12617018 3.48e-02 47_[+4(8.76e-05)]_65 chr2R:9505242-9505362 1.95e-01 62_[+1(2.01e-05)]_50 chrX:7542742-7542862 5.16e-02 31_[+3(2.04e-05)]_81 chr2R:8233630-8233750 1.92e-02 11_[+5(9.74e-05)]_101 chr3L:22928155-22928275 1.08e-03 6_[+4(6.45e-05)]_12_[+2(2.52e-05)]_\ 86 chr2L:12081243-12081363 1.53e-03 14_[+1(8.67e-05)]_63_[+4(1.70e-05)]_\ 27 chr2L:12392534-12392654 4.12e-05 69_[+1(1.16e-05)]_18_[+5(6.70e-05)]_\ 17 chr3L:11925531-11925651 9.65e-03 88_[+3(2.04e-05)]_24 chr2L:9850923-9851043 1.60e-03 14_[+4(3.88e-05)]_46_[+5(3.84e-05)]_\ 44 chrX:21582241-21582361 7.50e-02 38_[+1(1.16e-05)]_74 chrX:17865211-17865331 3.78e-03 68_[+2(1.75e-05)]_44 chr2R:19179653-19179773 8.04e-02 29_[+1(2.01e-05)]_4_[+1(1.16e-05)]_\ 71 chrX:3504418-3504538 3.27e-02 8_[+1(2.87e-05)]_104 chr3L:18551397-18551517 7.12e-03 33_[+5(6.70e-05)]_46_[+1(8.67e-05)]_\ 25 chr2R:20896475-20896595 1.89e-03 54_[+2(9.84e-06)]_13_[+2(9.84e-06)]_\ 37 chrX:11242588-11242708 1.48e-02 50_[+5(3.84e-05)]_62 chr3L:8653779-8653899 4.86e-02 71_[+4(1.70e-05)]_41 chr2R:8248179-8248299 1.93e-01 120 chr3R:21319135-21319255 1.56e-03 88_[+5(1.25e-05)]_12_[+5(2.86e-05)]_\ 4 chr2L:3615316-3615436 5.24e-02 32_[+3(2.04e-05)]_80 chr2L:4159726-4159846 1.50e-02 5_[+1(2.01e-05)]_31_[+2(7.70e-05)]_\ 68 chr2R:24725698-24725818 1.51e-03 8_[+2(5.89e-05)]_34_[+2(9.84e-06)]_\ 28_[+2(9.84e-06)]_26 chr3R:6863861-6863981 3.14e-01 120 chrX:20652484-20652604 3.51e-01 120 chr2R:20542608-20542728 3.46e-01 120 chr2R:8829174-8829294 1.01e-04 97_[+2(1.75e-05)]_15 chr2L:17266784-17266904 2.53e-01 19_[+3(7.43e-05)]_93 chr3L:13081389-13081509 3.86e-02 120 chr2L:4345024-4345144 1.33e-01 120 chr2L:15078521-15078641 6.16e-05 88_[+2(9.84e-06)]_24 chr2R:10243793-10243913 5.37e-03 86_[+2(1.75e-05)]_1_[+5(5.09e-05)]_\ 17 chr3R:29462415-29462535 2.51e-05 69_[+5(1.25e-05)]_19_[+1(1.16e-05)]_\ 16 chr3L:9029335-9029455 4.64e-03 47_[+4(1.70e-05)]_65 chr3L:5096809-5096929 1.32e-01 26_[+1(1.16e-05)]_86 chr2L:12677221-12677341 7.06e-03 20_[+1(1.16e-05)]_92 chr2R:10259888-10260008 1.62e-03 87_[+2(9.84e-06)]_25 chr2L:3078857-3078977 6.10e-02 120 chrX:14629545-14629665 7.74e-01 120 chr3R:6859196-6859316 6.72e-03 120 chr3R:16701114-16701234 7.18e-02 40_[+4(8.76e-05)]_72 chr3L:3271965-3272085 1.89e-01 120 chr3L:15838087-15838207 6.23e-05 58_[+5(1.25e-05)]_54 chr2L:19820661-19820781 8.67e-04 70_[+2(9.84e-06)]_42 chr3L:7052007-7052127 8.29e-03 47_[+1(1.16e-05)]_65 chrX:18138669-18138789 5.89e-01 120 chr2L:5866919-5867039 1.14e-01 55_[+1(1.16e-05)]_57 chr3R:11395979-11396099 2.67e-01 45_[+1(4.35e-05)]_67 chr2L:5474023-5474143 1.11e-02 43_[+4(1.70e-05)]_69 chr3L:15223957-15224077 2.41e-01 120 chr2L:19458063-19458183 5.12e-02 17_[+3(2.04e-05)]_95 chr3L:4432820-4432940 5.10e-01 120 chr3L:13378353-13378473 5.95e-03 26_[+3(4.65e-05)]_[+3(2.04e-05)]_78 chr2R:20471304-20471424 7.72e-01 120 chr3R:4348624-4348744 6.24e-01 120 chr3L:20694772-20694892 5.25e-02 39_[+3(2.04e-05)]_73 chr3L:8670397-8670517 2.32e-01 73_[+3(7.43e-05)]_39 chr3L:13305824-13305944 2.91e-02 120 chr3L:20623722-20623842 2.75e-01 120 chr3R:4849416-4849536 1.82e-02 28_[+4(1.70e-05)]_84 chr3R:16855977-16856097 5.03e-03 110_[+5(6.70e-05)]_2 chr2R:13623506-13623626 3.18e-03 72_[+5(1.25e-05)]_2_[+2(2.52e-05)]_\ 30 chr3R:15654098-15654218 7.05e-02 44_[+3(4.65e-05)]_47_[+3(7.43e-05)]_\ 13 chr3L:3522557-3522677 2.17e-01 120 chr3R:5125045-5125165 2.10e-03 6_[+3(4.65e-05)]_77_[+4(1.70e-05)]_\ 21 chrX:6119976-6120096 6.26e-02 120 chr2R:10107586-10107706 5.07e-02 55_[+5(9.74e-05)]_57 chr3L:18361538-18361658 1.16e-01 120 chrX:8654304-8654424 1.17e-01 120 chr2L:19263645-19263765 1.78e-03 8_[+3(2.04e-05)]_12_[+1(2.01e-05)]_\ 84 chr3L:11237256-11237376 1.07e-02 64_[+5(9.74e-05)]_48 chr3R:29722170-29722290 1.89e-03 23_[+1(2.87e-05)]_10_[+1(2.01e-05)]_\ 10_[+1(1.16e-05)]_53 chr3R:6885321-6885441 1.08e-02 94_[+4(8.76e-05)]_18 chr3L:20696538-20696658 1.56e-02 120 chr2R:20888888-20889008 1.22e-01 120 chr3R:30737561-30737681 1.21e-02 37_[+1(8.67e-05)]_75 chrX:14234608-14234728 1.52e-03 53_[+5(1.25e-05)]_16_[+2(9.84e-06)]_\ 35 chr3R:6755626-6755746 4.73e-03 84_[+4(1.70e-05)]_28 chr3R:18267776-18267896 2.97e-03 83_[+5(2.86e-05)]_29 chr2L:8850014-8850134 4.67e-01 14_[+1(8.67e-05)]_98 chr3L:16018435-16018555 2.06e-02 62_[+5(9.74e-05)]_50 chr2R:18678382-18678502 9.44e-02 13_[+1(1.16e-05)]_99 chr3L:1421156-1421276 1.90e-01 120 chr2L:14489040-14489160 9.05e-03 10_[+4(8.76e-05)]_12_[+3(2.04e-05)]_\ 82 chr3R:16742077-16742197 4.86e-01 120 chr2L:18934735-18934855 3.18e-02 19_[+1(1.16e-05)]_93 chrX:4135262-4135382 7.22e-02 71_[+1(1.16e-05)]_27_[+1(8.67e-05)]_\ 6 chr2L:12466652-12466772 1.03e-02 49_[+4(3.88e-05)]_63 chrX:12645559-12645679 8.93e-02 120 chr3L:14452676-14452796 5.15e-02 120 chrX:13847664-13847784 5.52e-04 17_[+2(1.75e-05)]_15_[+2(9.84e-06)]_\ 72 chr2L:12076084-12076204 3.47e-01 49_[+1(8.67e-05)]_63 chr3L:16252140-16252260 2.12e-04 109_[+2(1.75e-05)]_3 chr3R:11721103-11721223 2.70e-01 120 chr3L:13922855-13922975 8.62e-01 120 chr3L:11886494-11886614 2.57e-03 63_[+1(1.16e-05)]_49 chr4:942923-943043 1.37e-01 120 chr3L:10514930-10515050 2.15e-01 43_[+3(2.04e-05)]_69 chr3L:6690001-6690121 6.10e-04 28_[+2(9.84e-06)]_31_[+2(9.84e-06)]_\ 16_[+2(9.84e-06)]_1_[+5(1.25e-05)]_12 chr2L:518273-518393 2.24e-03 96_[+4(3.88e-05)]_16 chr3R:16878527-16878647 2.12e-01 120 chr2L:1957892-1958012 1.77e-01 120 chr2L:8111174-8111294 4.72e-02 57_[+1(2.01e-05)]_55 chr2R:10077259-10077379 2.24e-02 46_[+4(1.70e-05)]_66 chr3R:23133717-23133837 1.31e-01 10_[+2(6.93e-05)]_102 chrX:10243042-10243162 1.67e-01 5_[+4(3.88e-05)]_107 chrX:12276721-12276841 9.44e-01 120 chr2L:21107754-21107874 2.63e-02 120 chr3R:7929328-7929448 2.98e-01 65_[+1(9.76e-05)]_47 chr3L:24352761-24352881 2.38e-01 120 chr3R:25022480-25022600 1.33e-02 40_[+1(1.16e-05)]_11_[+1(2.87e-05)]_\ 53 chr3R:14832431-14832551 1.29e-01 9_[+1(2.01e-05)]_103 chr2L:2532038-2532158 4.31e-05 43_[+4(1.70e-05)]_15_[+5(2.86e-05)]_\ 19_[+1(9.76e-05)]_19 chr2L:3609359-3609479 2.31e-02 38_[+3(2.04e-05)]_[+3(2.04e-05)]_66 chr3R:25360893-25361013 3.78e-03 30_[+1(9.76e-05)]_7_[+5(3.84e-05)]_\ 67 chr3R:28586327-28586447 1.37e-02 8_[+3(2.04e-05)]_104 chr3R:16962390-16962510 2.02e-02 75_[+4(3.88e-05)]_37 chrX:20784796-20784916 3.56e-02 58_[+1(2.87e-05)]_54 chr3L:13622921-13623041 7.30e-02 120 chrX:10462075-10462195 2.87e-03 74_[+2(9.84e-06)]_38 chr2L:19338371-19338491 1.44e-02 42_[+4(1.70e-05)]_70 chr2L:9260851-9260971 4.75e-03 61_[+2(5.89e-05)]_51 chr2R:9567583-9567703 6.38e-03 81_[+5(5.09e-05)]_22_[+2(5.89e-05)]_\ 1 chr3L:11758190-11758310 3.62e-02 59_[+1(1.16e-05)]_53 chr2R:14312319-14312439 9.77e-01 120 chr3R:6845777-6845897 3.90e-03 47_[+3(4.65e-05)]_25_[+3(4.65e-05)]_\ 32 chrX:18301101-18301221 1.04e-03 [+4(3.88e-05)]_63_[+5(9.74e-05)]_41 chrX:15646948-15647068 2.59e-02 120 chr3L:1404699-1404819 2.13e-01 120 chr2L:14445755-14445875 7.15e-03 85_[+4(3.88e-05)]_27 chrX:7271779-7271899 3.80e-01 120 chr3R:23021842-23021962 7.80e-04 66_[+2(9.84e-06)]_46 chr3R:8683427-8683547 9.95e-01 120 chr3R:16892160-16892280 1.90e-02 25_[+4(1.70e-05)]_87 chr3L:11205007-11205127 6.27e-01 120 chr2L:9464718-9464838 2.62e-02 112_[+3(2.04e-05)] chr3L:4384369-4384489 6.05e-02 120 chr3R:7028720-7028840 1.42e-01 120 chr3R:19339343-19339463 3.80e-01 120 chr3L:15847442-15847562 4.08e-01 120 chr2R:8797622-8797742 1.38e-02 120 chr2R:11042306-11042426 6.07e-01 120 chr3L:4679178-4679298 4.82e-01 120 chr3L:14274759-14274879 4.26e-01 120 chr2R:15760446-15760566 8.61e-01 120 chrX:15355653-15355773 2.91e-01 120 chr3R:25194819-25194939 5.78e-01 120 chrX:12273113-12273233 7.20e-03 120 chr3L:8671135-8671255 7.89e-01 120 chr3L:19349955-19350075 1.85e-01 120 chr3R:29463141-29463261 3.87e-04 49_[+5(1.25e-05)]_63 chr2L:8633782-8633902 3.24e-03 47_[+2(3.86e-05)]_19_[+5(5.09e-05)]_\ 38 chr3L:1859638-1859758 1.27e-06 18_[+4(6.45e-05)]_35_[+1(2.01e-05)]_\ 37_[+2(1.75e-05)]_6 chr3R:13972262-13972382 2.16e-02 104_[+2(3.86e-05)]_8 chr2R:11084949-11085069 8.51e-02 120 chr3L:11516382-11516502 2.61e-01 120 chr2R:22874651-22874771 1.73e-01 120 chrX:9689286-9689406 5.86e-01 120 chr3L:20697438-20697558 1.66e-01 44_[+3(4.65e-05)]_19_[+3(7.43e-05)]_\ 41 chr3R:6949462-6949582 1.65e-01 120 chr2L:2967053-2967173 7.06e-02 8_[+1(1.16e-05)]_104 chrX:12947785-12947905 3.20e-01 120 chr3L:14451698-14451818 5.23e-01 120 chr2R:16398931-16399051 1.02e-01 45_[+1(1.16e-05)]_25_[+1(1.16e-05)]_\ 34 chr2L:21877049-21877169 6.24e-01 120 chr3L:4160934-4161054 1.19e-01 52_[+1(2.87e-05)]_60 chr3R:31090102-31090222 1.20e-01 120 chr3L:5623484-5623604 2.17e-01 53_[+4(6.45e-05)]_59 chrX:9729739-9729859 4.94e-01 120 chrX:5679891-5680011 2.50e-01 120 chr2L:14442789-14442909 9.52e-02 70_[+3(9.48e-05)]_42 chr2L:11344098-11344218 5.48e-02 120 chr3R:16865132-16865252 5.43e-02 120 chr3L:12857826-12857946 4.29e-03 110_[+5(1.25e-05)]_2 chr3L:12118233-12118353 2.65e-01 120 chr3L:17419501-17419621 2.88e-03 33_[+2(3.86e-05)]_79 chr3L:1576091-1576211 1.22e-02 79_[+1(2.87e-05)]_33 chr3R:4458382-4458502 1.92e-02 120 chr3L:9021124-9021244 3.61e-01 120 chr2L:11075303-11075423 7.71e-03 19_[+1(9.76e-05)]_46_[+3(4.65e-05)]_\ 39 chr3R:16028857-16028977 5.05e-02 26_[+3(2.04e-05)]_86 chr2L:6367265-6367385 8.56e-01 120 chr2L:8165953-8166073 1.51e-02 120 chr2R:13532009-13532129 8.53e-02 120 chr3L:14961176-14961296 3.80e-01 120 chr3R:19011021-19011141 3.42e-01 120 chr3R:9879939-9880059 1.06e-01 120 chr3R:30851699-30851819 7.24e-02 120 chr2L:14635224-14635344 8.72e-01 120 chr3L:11450708-11450828 4.45e-01 120 chrX:2136209-2136329 1.76e-01 120 chr3R:5327926-5328046 3.45e-01 120 chrX:18946962-18947082 3.01e-01 120 chr2R:25257087-25257207 2.01e-01 120 chr3L:15330323-15330443 6.90e-01 120 chrX:7086875-7086995 1.71e-01 53_[+1(1.16e-05)]_4_[+1(1.16e-05)]_\ 4_[+1(8.67e-05)]_35 chr2L:3610837-3610957 3.37e-02 120 chrX:7324124-7324244 9.00e-02 120 chr2R:20081388-20081508 6.43e-01 120 chr3R:10053718-10053838 1.54e-03 55_[+2(9.84e-06)]_57 chr2L:6373198-6373318 2.47e-01 120 chr2L:8276400-8276520 6.50e-01 120 chr2L:5724549-5724669 2.45e-01 120 chrX:15091352-15091472 2.13e-01 120 chr2R:13190090-13190210 9.83e-01 120 chr3L:16013260-16013380 6.47e-01 120 chr3L:22520143-22520263 7.71e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************