******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7101.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:14614552-14614672 1.0000 120 chrX:13759102-13759222 1.0000 120 chr2R:17676903-17677023 1.0000 120 chrX:9394998-9395118 1.0000 120 chr3L:11272805-11272925 1.0000 120 chrX:8895068-8895188 1.0000 120 chr3L:3940690-3940810 1.0000 120 chrX:9466288-9466408 1.0000 120 chr3L:20353878-20353998 1.0000 120 chr2R:6173425-6173545 1.0000 120 chrX:11378494-11378614 1.0000 120 chr3R:26248262-26248382 1.0000 120 chrX:3447828-3447948 1.0000 120 chrX:13972568-13972688 1.0000 120 chrX:13734991-13735111 1.0000 120 chr3L:15634791-15634911 1.0000 120 chrX:2108750-2108870 1.0000 120 chrX:11088946-11089066 1.0000 120 chrX:13779881-13780001 1.0000 120 chr3R:31250551-31250671 1.0000 120 chrX:2685230-2685350 1.0000 120 chr3R:19212697-19212817 1.0000 120 chrX:5921094-5921214 1.0000 120 chrX:2107922-2108042 1.0000 120 chr2L:8033856-8033976 1.0000 120 chrX:13838365-13838485 1.0000 120 chr2R:7673129-7673249 1.0000 120 chrX:17588178-17588298 1.0000 120 chr2R:9184565-9184685 1.0000 120 chr3L:11689825-11689945 1.0000 120 chr2L:3507628-3507748 1.0000 120 chr3L:7833533-7833653 1.0000 120 chr2R:6993947-6994067 1.0000 120 chr2L:10544111-10544231 1.0000 120 chrX:15314008-15314128 1.0000 120 chrX:17625953-17626073 1.0000 120 chrX:16675066-16675186 1.0000 120 chr2L:20674788-20674908 1.0000 120 chr3R:10679272-10679392 1.0000 120 chr3R:8712815-8712935 1.0000 120 chr2L:20098332-20098452 1.0000 120 chr3R:22381247-22381367 1.0000 120 chr2L:4930676-4930796 1.0000 120 chr3L:13994488-13994608 1.0000 120 chr3R:25762466-25762586 1.0000 120 chr2R:16732780-16732900 1.0000 120 chrX:6641708-6641828 1.0000 120 chr2L:5209908-5210028 1.0000 120 chrX:13376677-13376797 1.0000 120 chr3R:22816557-22816677 1.0000 120 chr3R:5761144-5761264 1.0000 120 chrX:5752084-5752204 1.0000 120 chr3R:5694588-5694708 1.0000 120 chrX:18100328-18100448 1.0000 120 chrX:11822110-11822230 1.0000 120 chr2R:6050188-6050308 1.0000 120 chr2L:7434927-7435047 1.0000 120 chrX:13935733-13935853 1.0000 120 chr3R:7076717-7076837 1.0000 120 chr3R:7522732-7522852 1.0000 120 chrX:11373469-11373589 1.0000 120 chr2L:843999-844119 1.0000 120 chrX:18094874-18094994 1.0000 120 chr2L:435559-435679 1.0000 120 chr2L:18713834-18713954 1.0000 120 chrX:11550182-11550302 1.0000 120 chr3R:18578183-18578303 1.0000 120 chrX:5428463-5428583 1.0000 120 chrX:13814180-13814300 1.0000 120 chr3R:21195702-21195822 1.0000 120 chr3R:15366972-15367092 1.0000 120 chr3R:18438330-18438450 1.0000 120 chr3R:7217327-7217447 1.0000 120 chrX:13934522-13934642 1.0000 120 chr3R:15320637-15320757 1.0000 120 chrX:7691569-7691689 1.0000 120 chr2L:18459802-18459922 1.0000 120 chr3R:10083224-10083344 1.0000 120 chrX:13105375-13105495 1.0000 120 chr3R:24865056-24865176 1.0000 120 chr2L:5302418-5302538 1.0000 120 chr2L:5007422-5007542 1.0000 120 chr3R:18582408-18582528 1.0000 120 chr3R:19132306-19132426 1.0000 120 chrX:15336037-15336157 1.0000 120 chr2R:7793178-7793298 1.0000 120 chr3L:14556973-14557093 1.0000 120 chrX:9047127-9047247 1.0000 120 chr2L:18153170-18153290 1.0000 120 chr2L:5303041-5303161 1.0000 120 chrX:13840222-13840342 1.0000 120 chrX:8533685-8533805 1.0000 120 chr2L:20887416-20887536 1.0000 120 chrX:16677307-16677427 1.0000 120 chr3R:15898382-15898502 1.0000 120 chrX:12031630-12031750 1.0000 120 chr2L:3880242-3880362 1.0000 120 chrX:15497516-15497636 1.0000 120 chrX:10735455-10735575 1.0000 120 chr3L:5641663-5641783 1.0000 120 chrX:3444913-3445033 1.0000 120 chrX:12905143-12905263 1.0000 120 chrX:2141215-2141335 1.0000 120 chrX:8973328-8973448 1.0000 120 chr2L:13203377-13203497 1.0000 120 chrX:16285307-16285427 1.0000 120 chr2L:8938143-8938263 1.0000 120 chrX:4614481-4614601 1.0000 120 chr3R:11429955-11430075 1.0000 120 chrX:15543574-15543694 1.0000 120 chr3L:17603702-17603822 1.0000 120 chr3L:8878553-8878673 1.0000 120 chr2R:14973127-14973247 1.0000 120 chr2L:7047858-7047978 1.0000 120 chr2L:13801288-13801408 1.0000 120 chr2R:12186226-12186346 1.0000 120 chrX:14909163-14909283 1.0000 120 chrX:16890703-16890823 1.0000 120 chr3L:4116621-4116741 1.0000 120 chrX:6344393-6344513 1.0000 120 chr2R:6693142-6693262 1.0000 120 chrX:6528643-6528763 1.0000 120 chrX:11137040-11137160 1.0000 120 chr2L:2216210-2216330 1.0000 120 chr2R:10799790-10799910 1.0000 120 chr3R:7945014-7945134 1.0000 120 chrX:16881171-16881291 1.0000 120 chrX:16920800-16920920 1.0000 120 chr3L:8979129-8979249 1.0000 120 chr2R:9607190-9607310 1.0000 120 chr3R:5483954-5484074 1.0000 120 chrX:10841902-10842022 1.0000 120 chrX:10736079-10736199 1.0000 120 chr3R:10081597-10081717 1.0000 120 chrX:8897003-8897123 1.0000 120 chr3R:5270965-5271085 1.0000 120 chrX:16092784-16092904 1.0000 120 chrX:2196211-2196331 1.0000 120 chr2L:13156477-13156597 1.0000 120 chrX:12663066-12663186 1.0000 120 chrX:15803076-15803196 1.0000 120 chr2R:10123713-10123833 1.0000 120 chr3L:16682563-16682683 1.0000 120 chr2L:18985887-18986007 1.0000 120 chr2R:19461649-19461769 1.0000 120 chrX:11349894-11350014 1.0000 120 chr2L:5242663-5242783 1.0000 120 chr2L:17558187-17558307 1.0000 120 chr3R:20545799-20545919 1.0000 120 chrX:6255525-6255645 1.0000 120 chrX:2075986-2076106 1.0000 120 chr2R:14881358-14881478 1.0000 120 chr2L:13808107-13808227 1.0000 120 chrX:13254610-13254730 1.0000 120 chr3R:8712028-8712148 1.0000 120 chr2L:5003185-5003305 1.0000 120 chrX:14805884-14806004 1.0000 120 chrX:4691340-4691460 1.0000 120 chr3L:14789787-14789907 1.0000 120 chr2R:17099735-17099855 1.0000 120 chr2L:8233763-8233883 1.0000 120 chr3L:7338966-7339086 1.0000 120 chrX:21519365-21519485 1.0000 120 chrX:18657564-18657684 1.0000 120 chr2L:7992079-7992199 1.0000 120 chrX:18407443-18407563 1.0000 120 chr3L:9065048-9065168 1.0000 120 chrX:12672453-12672573 1.0000 120 chrX:11441126-11441246 1.0000 120 chr3R:10380160-10380280 1.0000 120 chr2L:19433377-19433497 1.0000 120 chrX:6344592-6344712 1.0000 120 chr2L:4915774-4915894 1.0000 120 chr3R:25280065-25280185 1.0000 120 chr3R:14569877-14569997 1.0000 120 chrX:11820449-11820569 1.0000 120 chr2R:22373554-22373674 1.0000 120 chrX:15308697-15308817 1.0000 120 chr2L:3158577-3158697 1.0000 120 chr3R:12674163-12674283 1.0000 120 chr2R:21649099-21649219 1.0000 120 chr3L:21412291-21412411 1.0000 120 chr3R:30802957-30803077 1.0000 120 chr3R:5302051-5302171 1.0000 120 chr3L:5359446-5359566 1.0000 120 chr3L:12798840-12798960 1.0000 120 chrX:15453197-15453317 1.0000 120 chr2L:3647647-3647767 1.0000 120 chr2R:15304858-15304978 1.0000 120 chr2L:2374049-2374169 1.0000 120 chrX:11426057-11426177 1.0000 120 chr3L:12270020-12270140 1.0000 120 chr3L:11656351-11656471 1.0000 120 chr2R:11205386-11205506 1.0000 120 chr3R:26801572-26801692 1.0000 120 chr3R:19924449-19924569 1.0000 120 chr2R:9098464-9098584 1.0000 120 chr3R:30151657-30151777 1.0000 120 chr3R:29165054-29165174 1.0000 120 chr2L:6080521-6080641 1.0000 120 chr2L:8959136-8959256 1.0000 120 chrX:11379267-11379387 1.0000 120 chr2L:18966998-18967118 1.0000 120 chr3R:9954930-9955050 1.0000 120 chr3L:1968199-1968319 1.0000 120 chr3L:17804704-17804824 1.0000 120 chr3R:21176733-21176853 1.0000 120 chrX:3967737-3967857 1.0000 120 chr3L:17049977-17050097 1.0000 120 chr3R:23164243-23164363 1.0000 120 chrX:11146901-11147021 1.0000 120 chrX:11807287-11807407 1.0000 120 chr3R:29717682-29717802 1.0000 120 chrX:18858050-18858170 1.0000 120 chrX:12611615-12611735 1.0000 120 chrX:22449365-22449485 1.0000 120 chr3L:17401069-17401189 1.0000 120 chr3R:12443379-12443499 1.0000 120 chr3L:11623620-11623740 1.0000 120 chr2L:12046765-12046885 1.0000 120 chrX:6592195-6592315 1.0000 120 chrX:14679299-14679419 1.0000 120 chrX:8244470-8244590 1.0000 120 chrX:8407215-8407335 1.0000 120 chr2R:12870148-12870268 1.0000 120 chr3L:8121733-8121853 1.0000 120 chr3R:21193923-21194043 1.0000 120 chrX:16787519-16787639 1.0000 120 chr2R:24532056-24532176 1.0000 120 chrX:13845892-13846012 1.0000 120 chr3L:21972495-21972615 1.0000 120 chr3L:10698246-10698366 1.0000 120 chr3L:9059964-9060084 1.0000 120 chr2R:14513635-14513755 1.0000 120 chrX:13296890-13297010 1.0000 120 chr3R:21180450-21180570 1.0000 120 chrX:17726714-17726834 1.0000 120 chr3R:21157283-21157403 1.0000 120 chr3L:7861926-7862046 1.0000 120 chr2R:12198838-12198958 1.0000 120 chr3R:8893128-8893248 1.0000 120 chr3L:512007-512127 1.0000 120 chr3L:14564515-14564635 1.0000 120 chr3L:11070458-11070578 1.0000 120 chrX:7968379-7968499 1.0000 120 chr2L:13512254-13512374 1.0000 120 chr3R:13714245-13714365 1.0000 120 chr2R:16772622-16772742 1.0000 120 chr3L:5807488-5807608 1.0000 120 chr2L:9779242-9779362 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG7101/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7101.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.332 C 0.158 G 0.162 T 0.347 Background letter frequencies (from file dataset with add-one prior applied): A 0.332 C 0.158 G 0.162 T 0.347 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGCVGSSG MEME-1 width = 8 sites = 24 llr = 230 E-value = 2.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCVGSSG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::33::: pos.-specific C :182:44: probability G a924766a matrix T :::1:::: bits 2.7 * 2.4 * * 2.1 ** * 1.9 *** * Relative 1.6 *** * * Entropy 1.3 *** **** (13.8 bits) 1.1 *** **** 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel GGCGGGGG consensus GAACC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCVGSSG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6592195-6592315 29 4.63e-07 GGGTGGCGGG GGCGGGGG GGTATGGGCA chr2R:7793178-7793298 62 4.63e-07 GCGCTGCGAT GGCGGGGG AGGGTTGATG chr3L:5807488-5807608 76 9.14e-07 TCATTGAAGA GGCGGCGG CCAGGGGCCG chrX:16920800-16920920 106 5.44e-06 TTATCTTTAC GGCCGCCG CCAAATC chr2L:20674788-20674908 4 5.44e-06 AAC GGCAGCGG TGAACTTTGA chr3R:13714245-13714365 37 6.84e-06 TTTAGCGCCA GGCAGGCG GCTTTATCTC chr3L:1968199-1968319 44 6.84e-06 GAAATCGAGG GGGGGGGG GCAACTCCGC chr3R:10083224-10083344 100 6.84e-06 TTGAAAGTGT GGCAGGCG AGCTGCCAAC chr3R:9954930-9955050 108 1.05e-05 tgcacgtatc ggcgacgg tatct chr3R:11429955-11430075 43 1.05e-05 GAATTCTTGG GGCGACGG TCAACACTGC chr3L:17401069-17401189 101 1.47e-05 CTTTTGGGGG GGCCAGGG GGGTTGGCAC chrX:13840222-13840342 52 1.75e-05 TAGCAAACAC GGCTGCGG CACAAAGCTC chr2L:18459802-18459922 15 1.75e-05 GCAAACAAAG GGCTGCGG AAAATGTTTG chr3R:7076717-7076837 73 2.03e-05 GCGTCATTGT GCCGGGCG TCACATCCGC chr2R:22373554-22373674 58 2.45e-05 GAAACTTACG GGCAAGGG TAGTTCATAA chrX:13254610-13254730 49 2.45e-05 AATTAAGATG GGCCAGCG ATAAGCGAGT chrX:6255525-6255645 11 2.82e-05 GGCACGGCAT GGGAGGCG AAATATCGCC chr2R:7673129-7673249 22 2.82e-05 GGAGAAACAA GGGAGGCG GACTGGCAAG chr3R:5270965-5271085 70 3.57e-05 CACTGTAATG GGCAAGCG CACTGGAAAT chr2L:18713834-18713954 5 4.11e-05 CGCC GCCCGCCG AGATTAGTGC chr3L:9059964-9060084 1 4.45e-05 . GGGTGGGG TGTAGAACGC chr2R:16772622-16772742 65 5.58e-05 TGGCACCATG GGCGGCAG TGTTGTAAAA chr2R:17676903-17677023 92 7.14e-05 ATTAGCGACA GCCCAGGG TATTATTATT chrX:22449365-22449485 82 1.11e-04 GCAGCATAGT GGGGGCGC TATGAAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCVGSSG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6592195-6592315 4.6e-07 28_[+1]_84 chr2R:7793178-7793298 4.6e-07 61_[+1]_51 chr3L:5807488-5807608 9.1e-07 75_[+1]_37 chrX:16920800-16920920 5.4e-06 105_[+1]_7 chr2L:20674788-20674908 5.4e-06 3_[+1]_109 chr3R:13714245-13714365 6.8e-06 36_[+1]_76 chr3L:1968199-1968319 6.8e-06 43_[+1]_69 chr3R:10083224-10083344 6.8e-06 99_[+1]_13 chr3R:9954930-9955050 1.1e-05 107_[+1]_5 chr3R:11429955-11430075 1.1e-05 42_[+1]_70 chr3L:17401069-17401189 1.5e-05 100_[+1]_12 chrX:13840222-13840342 1.8e-05 51_[+1]_61 chr2L:18459802-18459922 1.8e-05 14_[+1]_98 chr3R:7076717-7076837 2e-05 72_[+1]_40 chr2R:22373554-22373674 2.5e-05 57_[+1]_55 chrX:13254610-13254730 2.5e-05 48_[+1]_64 chrX:6255525-6255645 2.8e-05 10_[+1]_102 chr2R:7673129-7673249 2.8e-05 21_[+1]_91 chr3R:5270965-5271085 3.6e-05 69_[+1]_43 chr2L:18713834-18713954 4.1e-05 4_[+1]_108 chr3L:9059964-9060084 4.4e-05 [+1]_112 chr2R:16772622-16772742 5.6e-05 64_[+1]_48 chr2R:17676903-17677023 7.1e-05 91_[+1]_21 chrX:22449365-22449485 0.00011 81_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCVGSSG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCVGSSG width=8 seqs=24 chrX:6592195-6592315 ( 29) GGCGGGGG 1 chr2R:7793178-7793298 ( 62) GGCGGGGG 1 chr3L:5807488-5807608 ( 76) GGCGGCGG 1 chrX:16920800-16920920 ( 106) GGCCGCCG 1 chr2L:20674788-20674908 ( 4) GGCAGCGG 1 chr3R:13714245-13714365 ( 37) GGCAGGCG 1 chr3L:1968199-1968319 ( 44) GGGGGGGG 1 chr3R:10083224-10083344 ( 100) GGCAGGCG 1 chr3R:9954930-9955050 ( 108) GGCGACGG 1 chr3R:11429955-11430075 ( 43) GGCGACGG 1 chr3L:17401069-17401189 ( 101) GGCCAGGG 1 chrX:13840222-13840342 ( 52) GGCTGCGG 1 chr2L:18459802-18459922 ( 15) GGCTGCGG 1 chr3R:7076717-7076837 ( 73) GCCGGGCG 1 chr2R:22373554-22373674 ( 58) GGCAAGGG 1 chrX:13254610-13254730 ( 49) GGCCAGCG 1 chrX:6255525-6255645 ( 11) GGGAGGCG 1 chr2R:7673129-7673249 ( 22) GGGAGGCG 1 chr3R:5270965-5271085 ( 70) GGCAAGCG 1 chr2L:18713834-18713954 ( 5) GCCCGCCG 1 chr3L:9059964-9060084 ( 1) GGGTGGGG 1 chr2R:16772622-16772742 ( 65) GGCGGCAG 1 chr2R:17676903-17677023 ( 92) GCCCAGGG 1 chrX:22449365-22449485 ( 82) GGGGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCVGSSG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 2.4e-003 -1123 -1123 262 -1123 -1123 -34 243 -1123 -1123 232 36 -1123 -19 40 121 -147 -19 -1123 212 -1123 -1123 140 184 -1123 -299 125 184 -1123 -1123 -192 256 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCVGSSG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.4e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.791667 0.208333 0.000000 0.291667 0.208333 0.375000 0.125000 0.291667 0.000000 0.708333 0.000000 0.000000 0.416667 0.583333 0.000000 0.041667 0.375000 0.583333 0.000000 0.000000 0.041667 0.958333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCVGSSG MEME-1 regular expression -------------------------------------------------------------------------------- GG[CG][GAC][GA][GC][GC]G -------------------------------------------------------------------------------- Time 7.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CCSACAGC MEME-2 width = 8 sites = 12 llr = 126 E-value = 7.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSACAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::7:7:: pos.-specific C a861a1:a probability G :343:1a: matrix T :::::2:: bits 2.7 * * ** 2.4 * * ** 2.1 * * ** 1.9 ** * ** Relative 1.6 *** * ** Entropy 1.3 *** * ** (15.2 bits) 1.1 *** * ** 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel CCCACAGC consensus GGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSACAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2685230-2685350 17 1.76e-06 TGTAACGTAT CCCACAGC ATAGATAAAA chrX:15336037-15336157 68 2.62e-06 ATTACGACTG CCCGCAGC TTTTATTACT chrX:13845892-13846012 106 4.42e-06 CTAAACACAT CCGACAGC ACTGGTT chrX:18100328-18100448 103 4.42e-06 CAGGTGACTG CCGACAGC TCTGAGTCAT chr2R:16772622-16772742 33 7.10e-06 GTTTGGCTCG CGCACAGC TGATTTGCTA chr2R:14881358-14881478 71 7.10e-06 TCAAAAAGCT CGCACAGC TAGCCAAAAA chrX:11146901-11147021 56 9.63e-06 ACCCGGAAAA CCCACGGC GGCTCTGACC chrX:13814180-13814300 69 1.24e-05 TCAATATTTG CCCACTGC TTTCTATTCG chrX:11137040-11137160 4 1.50e-05 GTC CCCGCCGC GTTGCGCAGC chr2L:6080521-6080641 41 1.85e-05 CGAACCACTC CCGCCAGC CCCCCGCGTA chrX:22449365-22449485 69 2.13e-05 TCATTCAGAG CGGGCAGC ATAGTGGGGG chrX:10736079-10736199 11 2.13e-05 TTGGATGACG CCGACTGC AAAGTGCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSACAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2685230-2685350 1.8e-06 16_[+2]_96 chrX:15336037-15336157 2.6e-06 67_[+2]_45 chrX:13845892-13846012 4.4e-06 105_[+2]_7 chrX:18100328-18100448 4.4e-06 102_[+2]_10 chr2R:16772622-16772742 7.1e-06 32_[+2]_80 chr2R:14881358-14881478 7.1e-06 70_[+2]_42 chrX:11146901-11147021 9.6e-06 55_[+2]_57 chrX:13814180-13814300 1.2e-05 68_[+2]_44 chrX:11137040-11137160 1.5e-05 3_[+2]_109 chr2L:6080521-6080641 1.9e-05 40_[+2]_72 chrX:22449365-22449485 2.1e-05 68_[+2]_44 chrX:10736079-10736199 2.1e-05 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSACAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSACAGC width=8 seqs=12 chrX:2685230-2685350 ( 17) CCCACAGC 1 chrX:15336037-15336157 ( 68) CCCGCAGC 1 chrX:13845892-13846012 ( 106) CCGACAGC 1 chrX:18100328-18100448 ( 103) CCGACAGC 1 chr2R:16772622-16772742 ( 33) CGCACAGC 1 chr2R:14881358-14881478 ( 71) CGCACAGC 1 chrX:11146901-11147021 ( 56) CCCACGGC 1 chrX:13814180-13814300 ( 69) CCCACTGC 1 chrX:11137040-11137160 ( 4) CCCGCCGC 1 chr2L:6080521-6080641 ( 41) CCGCCAGC 1 chrX:22449365-22449485 ( 69) CGGGCAGC 1 chrX:10736079-10736199 ( 11) CCGACTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSACAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 7.4e+001 -1023 266 -1023 -1023 -1023 225 62 -1023 -1023 188 136 -1023 100 -92 62 -1023 -1023 266 -1023 -1023 100 -92 -96 -106 -1023 -1023 262 -1023 -1023 266 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSACAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 7.4e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.583333 0.416667 0.000000 0.666667 0.083333 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.083333 0.083333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSACAGC MEME-2 regular expression -------------------------------------------------------------------------------- C[CG][CG][AG]CAGC -------------------------------------------------------------------------------- Time 14.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCMCCC MEME-3 width = 8 sites = 5 llr = 60 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCMCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::4::: pos.-specific C 2a:a68a8 probability G 8:a::2:: matrix T :::::::2 bits 2.7 *** * 2.4 *** * 2.1 *** * 1.9 **** ** Relative 1.6 **** *** Entropy 1.3 ******** (17.4 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCCCC consensus C AG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14569877-14569997 88 4.08e-07 attcaaAGGT GCGCCCCC TTTAAATAAG chrX:21519365-21519485 45 1.27e-06 AATTATCTTG GCGCACCC TAAAAATAAA chr3L:1968199-1968319 58 2.08e-06 GGGGGCAACT CCGCCCCC TTAGTCTATT chr3R:8712815-8712935 105 2.98e-06 CCCTTTAGCG GCGCCCCT GCTGATAA chrX:11146901-11147021 12 4.70e-06 CCACGTTTAT GCGCAGCC CAAAACAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14569877-14569997 4.1e-07 87_[+3]_25 chrX:21519365-21519485 1.3e-06 44_[+3]_68 chr3L:1968199-1968319 2.1e-06 57_[+3]_55 chr3R:8712815-8712935 3e-06 104_[+3]_8 chrX:11146901-11147021 4.7e-06 11_[+3]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCMCCC width=8 seqs=5 chr3R:14569877-14569997 ( 88) GCGCCCCC 1 chrX:21519365-21519485 ( 45) GCGCACCC 1 chr3L:1968199-1968319 ( 58) CCGCCCCC 1 chr3R:8712815-8712935 ( 105) GCGCCCCT 1 chrX:11146901-11147021 ( 12) GCGCAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 1.2e+003 -897 34 230 -897 -897 266 -897 -897 -897 -897 262 -897 -897 266 -897 -897 27 192 -897 -897 -897 234 30 -897 -897 266 -897 -897 -897 234 -897 -79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.2e+003 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCCC MEME-3 regular expression -------------------------------------------------------------------------------- [GC]CGC[CA][CG]C[CT] -------------------------------------------------------------------------------- Time 20.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGGGGS MEME-4 width = 8 sites = 3 llr = 40 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGGGGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C aa:::::7 probability G :::aaaa3 matrix T :::::::: bits 2.7 ** **** 2.4 ** **** 2.1 ** **** 1.9 ** ***** Relative 1.6 ******** Entropy 1.3 ******** (19.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCAGGGGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGGGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5807488-5807608 84 9.02e-07 GAGGCGGCGG CCAGGGGC CGAGTGACAG chrX:22449365-22449485 46 9.02e-07 TCTCGTTTGT CCAGGGGC GAAATTCATT chr3L:17804704-17804824 36 1.83e-06 ATGTTACATA CCAGGGGG CTGTTAACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGGGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5807488-5807608 9e-07 83_[+4]_29 chrX:22449365-22449485 9e-07 45_[+4]_67 chr3L:17804704-17804824 1.8e-06 35_[+4]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGGGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGGGGS width=8 seqs=3 chr3L:5807488-5807608 ( 84) CCAGGGGC 1 chrX:22449365-22449485 ( 46) CCAGGGGC 1 chr3L:17804704-17804824 ( 36) CCAGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGGGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 1.0e+004 -823 266 -823 -823 -823 266 -823 -823 159 -823 -823 -823 -823 -823 262 -823 -823 -823 262 -823 -823 -823 262 -823 -823 -823 262 -823 -823 207 104 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGGGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.0e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGGGGS MEME-4 regular expression -------------------------------------------------------------------------------- CCAGGGG[CG] -------------------------------------------------------------------------------- Time 27.24 secs. ******************************************************************************** ******************************************************************************** MOTIF ATKGCCGC MEME-5 width = 8 sites = 12 llr = 122 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATKGCCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7:2::2:: pos.-specific C :1::a81a probability G 3:3a::9: matrix T :95::::: bits 2.7 ** * 2.4 ** * 2.1 ** ** 1.9 ***** Relative 1.6 ***** Entropy 1.3 * ***** (14.7 bits) 1.1 ** ***** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ATTGCCGC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATKGCCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23164243-23164363 49 2.87e-06 TCGTAAATTT GTGGCCGC ACTGGTTGCT chrX:13734991-13735111 54 2.87e-06 TGGAAATATA ATGGCCGC CTTAAGTTGT chr3L:11623620-11623740 68 9.03e-06 TCTTTTAACG ATTGCCGC CTCTCAACAA chr2R:15304858-15304978 60 9.03e-06 TGACGTTCTT ATTGCCGC TCTGGCCGTT chr3R:18438330-18438450 88 9.03e-06 ACACAAAGTT GTTGCCGC TTCCCCGATT chrX:9466288-9466408 51 9.03e-06 AATACGCAGT GTTGCCGC TGTTGAAAAT chrX:16920800-16920920 82 1.49e-05 CAATCGATTT ATAGCCGC GTGCAGTTAT chr2L:18153170-18153290 90 1.49e-05 TAATGAGCTC ATAGCCGC GATTACTTTC chr2R:7793178-7793298 2 1.90e-05 G ACTGCCGC TTTTTCCTTT chrX:11349894-11350014 49 2.51e-05 TTGCGGCCAG GTGGCAGC TTCGCGCTCG chr3L:12798840-12798960 3 2.79e-05 CG ATGGCCCC ATCGTTTCGA chrX:15497516-15497636 31 4.08e-05 AATATTGTCA ATTGCAGC ATGTTAAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATKGCCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23164243-23164363 2.9e-06 48_[+5]_64 chrX:13734991-13735111 2.9e-06 53_[+5]_59 chr3L:11623620-11623740 9e-06 67_[+5]_45 chr2R:15304858-15304978 9e-06 59_[+5]_53 chr3R:18438330-18438450 9e-06 87_[+5]_25 chrX:9466288-9466408 9e-06 50_[+5]_62 chrX:16920800-16920920 1.5e-05 81_[+5]_31 chr2L:18153170-18153290 1.5e-05 89_[+5]_23 chr2R:7793178-7793298 1.9e-05 1_[+5]_111 chrX:11349894-11350014 2.5e-05 48_[+5]_64 chr3L:12798840-12798960 2.8e-05 2_[+5]_110 chrX:15497516-15497636 4.1e-05 30_[+5]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATKGCCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATKGCCGC width=8 seqs=12 chr3R:23164243-23164363 ( 49) GTGGCCGC 1 chrX:13734991-13735111 ( 54) ATGGCCGC 1 chr3L:11623620-11623740 ( 68) ATTGCCGC 1 chr2R:15304858-15304978 ( 60) ATTGCCGC 1 chr3R:18438330-18438450 ( 88) GTTGCCGC 1 chrX:9466288-9466408 ( 51) GTTGCCGC 1 chrX:16920800-16920920 ( 82) ATAGCCGC 1 chr2L:18153170-18153290 ( 90) ATAGCCGC 1 chr2R:7793178-7793298 ( 2) ACTGCCGC 1 chrX:11349894-11350014 ( 49) GTGGCAGC 1 chr3L:12798840-12798960 ( 3) ATGGCCCC 1 chrX:15497516-15497636 ( 31) ATTGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATKGCCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 1.5e+004 100 -1023 104 -1023 -1023 -92 -1023 140 -99 -1023 104 52 -1023 -1023 262 -1023 -1023 266 -1023 -1023 -99 240 -1023 -1023 -1023 -92 250 -1023 -1023 266 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATKGCCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.5e+004 0.666667 0.000000 0.333333 0.000000 0.000000 0.083333 0.000000 0.916667 0.166667 0.000000 0.333333 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATKGCCGC MEME-5 regular expression -------------------------------------------------------------------------------- [AG]T[TG]GCCGC -------------------------------------------------------------------------------- Time 33.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14614552-14614672 1.00e+00 120 chrX:13759102-13759222 9.32e-01 120 chr2R:17676903-17677023 8.72e-04 91_[+1(7.14e-05)]_21 chrX:9394998-9395118 4.04e-01 120 chr3L:11272805-11272925 9.96e-01 120 chrX:8895068-8895188 5.99e-01 120 chr3L:3940690-3940810 6.99e-01 120 chrX:9466288-9466408 4.60e-03 50_[+5(9.03e-06)]_62 chr3L:20353878-20353998 5.12e-01 120 chr2R:6173425-6173545 1.00e+00 120 chrX:11378494-11378614 1.39e-02 120 chr3R:26248262-26248382 1.00e+00 120 chrX:3447828-3447948 9.99e-01 120 chrX:13972568-13972688 8.73e-01 120 chrX:13734991-13735111 2.89e-03 53_[+5(2.87e-06)]_59 chr3L:15634791-15634911 1.00e+00 120 chrX:2108750-2108870 7.35e-01 120 chrX:11088946-11089066 4.79e-01 120 chrX:13779881-13780001 9.74e-01 120 chr3R:31250551-31250671 3.35e-01 120 chrX:2685230-2685350 5.64e-03 16_[+2(1.76e-06)]_96 chr3R:19212697-19212817 1.23e-01 120 chrX:5921094-5921214 2.81e-02 120 chrX:2107922-2108042 6.98e-01 120 chr2L:8033856-8033976 9.72e-01 120 chrX:13838365-13838485 1.00e+00 120 chr2R:7673129-7673249 1.80e-02 21_[+1(2.82e-05)]_91 chrX:17588178-17588298 7.76e-01 120 chr2R:9184565-9184685 1.00e+00 120 chr3L:11689825-11689945 9.97e-01 120 chr2L:3507628-3507748 1.00e+00 120 chr3L:7833533-7833653 1.00e+00 120 chr2R:6993947-6994067 5.85e-01 120 chr2L:10544111-10544231 4.02e-01 120 chrX:15314008-15314128 8.90e-01 120 chrX:17625953-17626073 5.36e-01 120 chrX:16675066-16675186 8.93e-01 120 chr2L:20674788-20674908 7.79e-05 3_[+1(5.44e-06)]_109 chr3R:10679272-10679392 9.25e-01 120 chr3R:8712815-8712935 1.33e-03 104_[+3(2.98e-06)]_8 chr2L:20098332-20098452 1.17e-02 120 chr3R:22381247-22381367 3.40e-03 120 chr2L:4930676-4930796 9.88e-01 120 chr3L:13994488-13994608 9.96e-01 120 chr3R:25762466-25762586 6.57e-02 120 chr2R:16732780-16732900 4.48e-01 120 chrX:6641708-6641828 1.31e-01 120 chr2L:5209908-5210028 9.28e-01 120 chrX:13376677-13376797 9.06e-01 120 chr3R:22816557-22816677 9.93e-01 120 chr3R:5761144-5761264 1.92e-02 47_[+4(3.76e-05)]_65 chrX:5752084-5752204 1.00e+00 120 chr3R:5694588-5694708 9.67e-01 120 chrX:18100328-18100448 3.53e-04 102_[+2(4.42e-06)]_10 chrX:11822110-11822230 3.40e-01 120 chr2R:6050188-6050308 2.05e-01 120 chr2L:7434927-7435047 4.10e-01 120 chrX:13935733-13935853 5.15e-01 120 chr3R:7076717-7076837 1.06e-03 72_[+1(2.03e-05)]_40 chr3R:7522732-7522852 7.08e-01 120 chrX:11373469-11373589 9.29e-01 120 chr2L:843999-844119 3.09e-01 120 chrX:18094874-18094994 7.68e-01 120 chr2L:435559-435679 8.29e-01 120 chr2L:18713834-18713954 1.50e-04 2_[+2(3.64e-05)]_110 chrX:11550182-11550302 9.07e-01 120 chr3R:18578183-18578303 1.13e-02 120 chrX:5428463-5428583 6.39e-02 120 chrX:13814180-13814300 2.82e-02 68_[+2(1.24e-05)]_44 chr3R:21195702-21195822 5.32e-01 120 chr3R:15366972-15367092 1.00e+00 120 chr3R:18438330-18438450 1.81e-03 87_[+5(9.03e-06)]_25 chr3R:7217327-7217447 1.20e-01 33_[+5(6.19e-05)]_79 chrX:13934522-13934642 1.06e-02 120 chr3R:15320637-15320757 1.48e-01 120 chrX:7691569-7691689 1.05e-01 120 chr2L:18459802-18459922 5.17e-04 14_[+1(1.75e-05)]_98 chr3R:10083224-10083344 1.85e-04 99_[+1(6.84e-06)]_13 chrX:13105375-13105495 2.73e-02 25_[+4(6.66e-05)]_87 chr3R:24865056-24865176 1.00e+00 120 chr2L:5302418-5302538 4.59e-01 120 chr2L:5007422-5007542 9.81e-01 120 chr3R:18582408-18582528 5.42e-02 120 chr3R:19132306-19132426 9.44e-01 120 chrX:15336037-15336157 5.43e-06 67_[+2(2.62e-06)]_45 chr2R:7793178-7793298 3.25e-08 1_[+5(1.90e-05)]_52_[+1(4.63e-07)]_\ 51 chr3L:14556973-14557093 1.00e+00 120 chrX:9047127-9047247 5.42e-01 120 chr2L:18153170-18153290 5.59e-02 89_[+5(1.49e-05)]_23 chr2L:5303041-5303161 8.10e-01 120 chrX:13840222-13840342 1.56e-03 51_[+1(1.75e-05)]_61 chrX:8533685-8533805 9.97e-01 120 chr2L:20887416-20887536 1.61e-01 120 chrX:16677307-16677427 1.00e+00 120 chr3R:15898382-15898502 1.00e+00 120 chrX:12031630-12031750 1.00e+00 120 chr2L:3880242-3880362 3.05e-01 120 chrX:15497516-15497636 1.31e-01 30_[+5(4.08e-05)]_82 chrX:10735455-10735575 7.07e-01 120 chr3L:5641663-5641783 4.26e-01 120 chrX:3444913-3445033 7.12e-01 120 chrX:12905143-12905263 1.00e+00 120 chrX:2141215-2141335 2.13e-01 120 chrX:8973328-8973448 5.61e-04 120 chr2L:13203377-13203497 1.00e+00 120 chrX:16285307-16285427 3.16e-01 120 chr2L:8938143-8938263 3.67e-01 120 chrX:4614481-4614601 2.20e-03 120 chr3R:11429955-11430075 2.47e-03 42_[+1(1.05e-05)]_70 chrX:15543574-15543694 5.16e-01 120 chr3L:17603702-17603822 9.73e-02 120 chr3L:8878553-8878673 4.73e-01 120 chr2R:14973127-14973247 3.63e-01 120 chr2L:7047858-7047978 6.49e-01 120 chr2L:13801288-13801408 9.98e-01 120 chr2R:12186226-12186346 3.52e-01 120 chrX:14909163-14909283 2.46e-01 120 chrX:16890703-16890823 2.33e-02 120 chr3L:4116621-4116741 5.78e-01 120 chrX:6344393-6344513 5.72e-02 120 chr2R:6693142-6693262 5.32e-01 120 chrX:6528643-6528763 7.06e-01 120 chrX:11137040-11137160 4.52e-05 3_[+2(1.50e-05)]_15_[+5(7.75e-05)]_\ 86 chr2L:2216210-2216330 2.65e-01 120 chr2R:10799790-10799910 6.45e-01 120 chr3R:7945014-7945134 3.06e-01 120 chrX:16881171-16881291 9.94e-01 120 chrX:16920800-16920920 1.44e-07 81_[+5(1.49e-05)]_18_[+3(5.10e-06)]_\ 5 chr3L:8979129-8979249 8.29e-01 120 chr2R:9607190-9607310 1.74e-01 120 chr3R:5483954-5484074 2.79e-01 120 chrX:10841902-10842022 5.24e-02 68_[+5(8.62e-05)]_44 chrX:10736079-10736199 1.04e-03 10_[+2(2.13e-05)]_102 chr3R:10081597-10081717 3.12e-02 120 chrX:8897003-8897123 1.00e+00 120 chr3R:5270965-5271085 1.22e-02 69_[+1(3.57e-05)]_43 chrX:16092784-16092904 1.50e-01 120 chrX:2196211-2196331 1.58e-01 120 chr2L:13156477-13156597 1.00e+00 120 chrX:12663066-12663186 9.99e-01 120 chrX:15803076-15803196 2.74e-02 120 chr2R:10123713-10123833 2.27e-01 120 chr3L:16682563-16682683 4.73e-01 120 chr2L:18985887-18986007 9.65e-01 120 chr2R:19461649-19461769 7.63e-01 120 chrX:11349894-11350014 3.99e-05 48_[+5(2.51e-05)]_64 chr2L:5242663-5242783 6.83e-01 120 chr2L:17558187-17558307 1.00e+00 120 chr3R:20545799-20545919 6.62e-01 120 chrX:6255525-6255645 2.61e-02 10_[+1(2.82e-05)]_102 chrX:2075986-2076106 5.38e-01 120 chr2R:14881358-14881478 5.78e-03 70_[+2(7.10e-06)]_42 chr2L:13808107-13808227 4.30e-04 120 chrX:13254610-13254730 2.98e-03 48_[+1(2.45e-05)]_64 chr3R:8712028-8712148 1.00e+00 120 chr2L:5003185-5003305 9.44e-01 120 chrX:14805884-14806004 4.19e-02 120 chrX:4691340-4691460 9.77e-01 120 chr3L:14789787-14789907 2.70e-02 120 chr2R:17099735-17099855 9.98e-01 120 chr2L:8233763-8233883 9.53e-01 120 chr3L:7338966-7339086 2.65e-01 120 chrX:21519365-21519485 6.64e-04 44_[+3(1.27e-06)]_68 chrX:18657564-18657684 3.65e-02 120 chr2L:7992079-7992199 7.78e-02 120 chrX:18407443-18407563 9.31e-01 120 chr3L:9065048-9065168 3.51e-01 120 chrX:12672453-12672573 7.47e-01 120 chrX:11441126-11441246 9.92e-01 120 chr3R:10380160-10380280 8.61e-01 120 chr2L:19433377-19433497 9.88e-01 120 chrX:6344592-6344712 1.00e+00 120 chr2L:4915774-4915894 7.35e-01 120 chr3R:25280065-25280185 7.68e-02 120 chr3R:14569877-14569997 9.69e-04 87_[+3(4.08e-07)]_25 chrX:11820449-11820569 8.40e-01 120 chr2R:22373554-22373674 7.57e-02 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32_[+2(7.10e-06)]_19_[+4(3.76e-05)]_\ 53 chr3L:5807488-5807608 1.07e-07 75_[+1(9.14e-07)]_[+4(9.02e-07)]_29 chr2L:9779242-9779362 4.30e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************