******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6854.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:13256298-13256418 1.0000 120 chr3L:6066125-6066245 1.0000 120 chr3R:6252967-6253087 1.0000 120 chr3R:13786033-13786153 1.0000 120 chr3L:4307817-4307937 1.0000 120 chrX:3833231-3833351 1.0000 120 chr2R:7588194-7588314 1.0000 120 chr3R:19036634-19036754 1.0000 120 chr3R:11991628-11991748 1.0000 120 chr3R:19254200-19254320 1.0000 120 chr3L:5835602-5835722 1.0000 120 chr3L:18162330-18162450 1.0000 120 chr3R:14651345-14651465 1.0000 120 chr2R:16217178-16217298 1.0000 120 chr3R:19151226-19151346 1.0000 120 chr3L:15105718-15105838 1.0000 120 chr3L:6442764-6442884 1.0000 120 chrX:2361143-2361263 1.0000 120 chr2R:7308701-7308821 1.0000 120 chr2R:23815993-23816113 1.0000 120 chr3R:15427306-15427426 1.0000 120 chr3L:17939795-17939915 1.0000 120 chr2R:22572700-22572820 1.0000 120 chr2L:8274256-8274376 1.0000 120 chr3L:8775136-8775256 1.0000 120 chr3R:19623423-19623543 1.0000 120 chr2R:18945630-18945750 1.0000 120 chr3L:3099175-3099295 1.0000 120 chr3L:6440240-6440360 1.0000 120 chr2R:8122465-8122585 1.0000 120 chrX:2031230-2031350 1.0000 120 chr2R:7145244-7145364 1.0000 120 chr2L:8142924-8143044 1.0000 120 chr2R:19822596-19822716 1.0000 120 chr3L:4304411-4304531 1.0000 120 chr3L:14515778-14515898 1.0000 120 chr3R:7978514-7978634 1.0000 120 chr3L:15763316-15763436 1.0000 120 chr3L:15107499-15107619 1.0000 120 chr3R:15433509-15433629 1.0000 120 chr3R:21704591-21704711 1.0000 120 chr3L:15103010-15103130 1.0000 120 chr2L:4588936-4589056 1.0000 120 chr2L:20486853-20486973 1.0000 120 chrX:1570472-1570592 1.0000 120 chr3L:14202454-14202574 1.0000 120 chrX:18675408-18675528 1.0000 120 chr2R:13462994-13463114 1.0000 120 chr3L:12095559-12095679 1.0000 120 chr2R:7086215-7086335 1.0000 120 chr3L:17985356-17985476 1.0000 120 chr3R:14474921-14475041 1.0000 120 chr3R:9897584-9897704 1.0000 120 chr3R:26797881-26798001 1.0000 120 chr3R:13974872-13974992 1.0000 120 chrX:10721335-10721455 1.0000 120 chr2L:7608195-7608315 1.0000 120 chr3L:4719817-4719937 1.0000 120 chr3R:20835868-20835988 1.0000 120 chr3R:15437653-15437773 1.0000 120 chr3L:5867338-5867458 1.0000 120 chr3L:22465950-22466070 1.0000 120 chr3L:15265135-15265255 1.0000 120 chr3R:27218969-27219089 1.0000 120 chr3R:24969064-24969184 1.0000 120 chr3L:8882700-8882820 1.0000 120 chr3R:16206238-16206358 1.0000 120 chr2R:9028890-9029010 1.0000 120 chr3L:1822492-1822612 1.0000 120 chr2R:15483742-15483862 1.0000 120 chr2L:14183058-14183178 1.0000 120 chr2R:7261851-7261971 1.0000 120 chr2R:23715532-23715652 1.0000 120 chr2R:18313221-18313341 1.0000 120 chr2L:847838-847958 1.0000 120 chrX:13138958-13139078 1.0000 120 chr2R:14986450-14986570 1.0000 120 chr3L:2874174-2874294 1.0000 120 chr3L:13255156-13255276 1.0000 120 chr2R:7909600-7909720 1.0000 120 chr3L:10712966-10713086 1.0000 120 chr3L:12108916-12109036 1.0000 120 chr2R:9006564-9006684 1.0000 120 chr2R:6548465-6548585 1.0000 120 chrX:17252121-17252241 1.0000 120 chr2R:14873901-14874021 1.0000 120 chrX:3099247-3099367 1.0000 120 chr3L:20984553-20984673 1.0000 120 chrX:17732261-17732381 1.0000 120 chr3L:1828101-1828221 1.0000 120 chr3R:26906278-26906398 1.0000 120 chr3R:19328850-19328970 1.0000 120 chr2L:635131-635251 1.0000 120 chr3L:6249266-6249386 1.0000 120 chr3R:30095456-30095576 1.0000 120 chr3R:19064211-19064331 1.0000 120 chr3R:17702103-17702223 1.0000 120 chr3R:31504992-31505112 1.0000 120 chr3L:9768113-9768233 1.0000 120 chr2R:19578808-19578928 1.0000 120 chrX:14868523-14868643 1.0000 120 chr2R:24983320-24983440 1.0000 120 chr2R:6547415-6547535 1.0000 120 chr3R:7322692-7322812 1.0000 120 chr3R:16232683-16232803 1.0000 120 chr2R:16310492-16310612 1.0000 120 chr3L:15246532-15246652 1.0000 120 chr3L:5625274-5625394 1.0000 120 chr2L:7522611-7522731 1.0000 120 chr3R:13816395-13816515 1.0000 120 chr3L:3074869-3074989 1.0000 120 chrX:10932333-10932453 1.0000 120 chr3R:31248283-31248403 1.0000 120 chr3R:21896234-21896354 1.0000 120 chr3L:4055602-4055722 1.0000 120 chr3L:5571220-5571340 1.0000 120 chr2R:21301767-21301887 1.0000 120 chr2L:21015622-21015742 1.0000 120 chrX:16647912-16648032 1.0000 120 chr2R:22399499-22399619 1.0000 120 chr2R:12460724-12460844 1.0000 120 chr3L:11320230-11320350 1.0000 120 chr2R:10694101-10694221 1.0000 120 chr2R:20574477-20574597 1.0000 120 chr3R:10828804-10828924 1.0000 120 chr3L:17631382-17631502 1.0000 120 chr3L:8652664-8652784 1.0000 120 chr2R:5691888-5692008 1.0000 120 chrX:1574416-1574536 1.0000 120 chr2R:12533932-12534052 1.0000 120 chr2R:21618968-21619088 1.0000 120 chr2R:13465184-13465304 1.0000 120 chr3R:7995919-7996039 1.0000 120 chrX:2649132-2649252 1.0000 120 chr3R:14743537-14743657 1.0000 120 chr3R:5332160-5332280 1.0000 120 chr2L:8007319-8007439 1.0000 120 chrX:9030023-9030143 1.0000 120 chr3R:5097237-5097357 1.0000 120 chr3L:19696195-19696315 1.0000 120 chr3R:4472712-4472832 1.0000 120 chr2R:11082301-11082421 1.0000 120 chr3R:14716311-14716431 1.0000 120 chr2L:7702919-7703039 1.0000 120 chr3L:15101743-15101863 1.0000 120 chr3R:19112526-19112646 1.0000 120 chr2L:7573652-7573772 1.0000 120 chr3R:8969489-8969609 1.0000 120 chr2R:10236256-10236376 1.0000 120 chr2L:11196913-11197033 1.0000 120 chr3L:15108265-15108385 1.0000 120 chr3R:31505743-31505863 1.0000 120 chr3L:21689297-21689417 1.0000 120 chrX:2453335-2453455 1.0000 120 chr3L:21104729-21104849 1.0000 120 chr2R:22156727-22156847 1.0000 120 chr3L:1866501-1866621 1.0000 120 chr2L:12423918-12424038 1.0000 120 chr3R:6244206-6244326 1.0000 120 chr2L:14499634-14499754 1.0000 120 chr2R:23055101-23055221 1.0000 120 chr2R:10775342-10775462 1.0000 120 chr2R:9012087-9012207 1.0000 120 chr2R:24957410-24957530 1.0000 120 chr3L:10777982-10778102 1.0000 120 chrX:13421181-13421301 1.0000 120 chr2R:25009602-25009722 1.0000 120 chr2R:11832062-11832182 1.0000 120 chr2L:20794797-20794917 1.0000 120 chr2R:16839907-16840027 1.0000 120 chr2R:17469834-17469954 1.0000 120 chr3R:20765497-20765617 1.0000 120 chr2R:14433383-14433503 1.0000 120 chr2R:12635746-12635866 1.0000 120 chrX:1320270-1320390 1.0000 120 chr3L:20734025-20734145 1.0000 120 chr3R:12413365-12413485 1.0000 120 chr2R:7195090-7195210 1.0000 120 chr2L:10794177-10794297 1.0000 120 chr2R:22080370-22080490 1.0000 120 chr2R:5683958-5684078 1.0000 120 chr3R:13992280-13992400 1.0000 120 chr3L:14456057-14456177 1.0000 120 chr3L:8871163-8871283 1.0000 120 chr3L:21225023-21225143 1.0000 120 chr3L:12111212-12111332 1.0000 120 chr2L:20908184-20908304 1.0000 120 chrX:4386434-4386554 1.0000 120 chr2R:23432306-23432426 1.0000 120 chr3L:21056892-21057012 1.0000 120 chr3R:27597386-27597506 1.0000 120 chr2R:6548690-6548810 1.0000 120 chr3R:14433672-14433792 1.0000 120 chr3R:25205766-25205886 1.0000 120 chr2R:14337673-14337793 1.0000 120 chr3L:16710072-16710192 1.0000 120 chr3L:13119061-13119181 1.0000 120 chr2R:19867336-19867456 1.0000 120 chrX:20244470-20244590 1.0000 120 chr3L:6219671-6219791 1.0000 120 chr2L:13886758-13886878 1.0000 120 chr2L:12013628-12013748 1.0000 120 chr2R:8985592-8985712 1.0000 120 chr3R:30192474-30192594 1.0000 120 chr2R:22933921-22934041 1.0000 120 chr2R:7308900-7309020 1.0000 120 chr2L:14177704-14177824 1.0000 120 chr3R:27186052-27186172 1.0000 120 chr3R:29818982-29819102 1.0000 120 chr2R:19149617-19149737 1.0000 120 chr3L:9549618-9549738 1.0000 120 chr3L:16165468-16165588 1.0000 120 chr3R:19294017-19294137 1.0000 120 chr3R:16357021-16357141 1.0000 120 chr3R:25331041-25331161 1.0000 120 chr3R:6401330-6401450 1.0000 120 chr3R:21089557-21089677 1.0000 120 chr3L:2439170-2439290 1.0000 120 chr3R:9964703-9964823 1.0000 120 chrX:22515065-22515185 1.0000 120 chr2L:21313124-21313244 1.0000 120 chr2R:14027223-14027343 1.0000 120 chr2L:16816818-16816938 1.0000 120 chr3R:14653309-14653429 1.0000 120 chr2R:21382947-21383067 1.0000 120 chr3R:4667180-4667300 1.0000 120 chrX:18666012-18666132 1.0000 120 chr2R:7252162-7252282 1.0000 120 chr3L:19021854-19021974 1.0000 120 chr3R:14363276-14363396 1.0000 120 chr3L:22147403-22147523 1.0000 120 chr2R:18312118-18312238 1.0000 120 chr3L:22421050-22421170 1.0000 120 chr2L:14598764-14598884 1.0000 120 chr2R:24685242-24685362 1.0000 120 chr3R:26464515-26464635 1.0000 120 chr2R:7289649-7289769 1.0000 120 chr3R:4307866-4307986 1.0000 120 chr3L:2873242-2873362 1.0000 120 chr3R:9222509-9222629 1.0000 120 chrX:10547745-10547865 1.0000 120 chr3L:21052373-21052493 1.0000 120 chr3R:30827756-30827876 1.0000 120 chr2R:23034149-23034269 1.0000 120 chr3L:15641470-15641590 1.0000 120 chr3R:16251985-16252105 1.0000 120 chr2L:16536584-16536704 1.0000 120 chr3L:10787804-10787924 1.0000 120 chrX:16940564-16940684 1.0000 120 chrX:5772551-5772671 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG6854/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6854.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.253 C 0.242 G 0.25 T 0.255 Background letter frequencies (from file dataset with add-one prior applied): A 0.253 C 0.242 G 0.25 T 0.255 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 86 llr = 665 E-value = 3.0e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::13:::: pos.-specific C ::3:2::: probability G :::1::11 matrix T aa668a99 bits 2.0 * * 1.8 ** * 1.6 ** * 1.4 ** *** Relative 1.2 ** **** Entropy 1.0 ** **** (11.1 bits) 0.8 ** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus CAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10787804-10787924 18 1.79e-05 AATATTTAAT TTTTTTTT CTCCCCATTT chr2R:14027223-14027343 28 1.79e-05 CAACGTACTT TTTTTTTT GCTGCGCTTC chrX:20244470-20244590 83 1.79e-05 gtttttttgt tttttttt tGGCTCTTTG chrX:4386434-4386554 8 1.79e-05 GGCATTT TTTTTTTT TTTATTCGCT chr2L:20908184-20908304 80 1.79e-05 ttttattatt tttttttt cgcttttttG chr2R:12635746-12635866 59 1.79e-05 TGTTGTTGGT TTTTTTTT ATTCGGTACT chr3L:19696195-19696315 44 1.79e-05 TTTTGTATTG TTTTTTTT GTTGTTGCTT chr2R:20574477-20574597 82 1.79e-05 TCTTTCCTCC TTTTTTTT TTTGTGAGCA chr3R:21896234-21896354 50 1.79e-05 TTCTGTTGTG TTTTTTTT GCTGTTTATT chr3L:6249266-6249386 86 1.79e-05 AGCTCGTATG TTTTTTTT CACGATTTTC chr3R:26906278-26906398 56 1.79e-05 CTTATTTCGG TTTTTTTT TGTGAGTTGC chr3L:10712966-10713086 13 1.79e-05 ttgcgttctt tttttttt tttgttGGGA chr2R:15483742-15483862 52 1.79e-05 TCCCCCTTGT TTTTTTTT CTGCGTTTTT chrX:10721335-10721455 37 1.79e-05 tttgtttttc tttttttt ctctcatttt chr3R:13974872-13974992 9 1.79e-05 tttttgta tttttttt tttttttgct chr3R:9897584-9897704 26 1.79e-05 GGCCCATTTT TTTTTTTT CTGGTGGAGG chr2L:4588936-4589056 26 1.79e-05 TCAGTTATTT TTTTTTTT TTGGGCAAAG chr3R:21704591-21704711 46 1.79e-05 TTCCCTGGCG TTTTTTTT TTTATTCATC chr2R:22572700-22572820 3 1.79e-05 CC TTTTTTTT TTTGGCAATG chr3R:19036634-19036754 111 1.79e-05 attattttat tttttttt at chr2L:14177704-14177824 94 3.48e-05 attattattt ttcttttt GTGGTGGATG chr3R:13992280-13992400 27 3.48e-05 GTTTTGTTTT TTCTTTTT TTGGGCACCT chr2R:12533932-12534052 100 3.48e-05 GGGCTCGCAt ttcttttt tatggtgttt chr3L:17985356-17985476 59 3.48e-05 TTCTTTGTGG TTCTTTTT CGACTACCAA chr3L:14515778-14515898 78 3.48e-05 CGTTGATTCC TTCTTTTT GTTTGATAAA chrX:2361143-2361263 82 3.48e-05 CCTCTTTCTT TTCTTTTT TGTGTGTGTT chr3L:18162330-18162450 4 3.48e-05 CGC TTCTTTTT CTCCGCGTGT chr3L:2873242-2873362 69 5.26e-05 TATTATTTTC TTTATTTT TTGTGGCACA chr2R:7289649-7289769 50 5.26e-05 TCTCTCCTCT TTTATTTT ATTTCTTTGG chr3R:25205766-25205886 56 5.26e-05 CTTATTTTTC TTTATTTT GGCCAACAGC chr2L:7702919-7703039 22 5.26e-05 CTACGGTGCT TTTATTTT GGTGCTGCTG chrX:1574416-1574536 67 5.26e-05 AGTTTTTGGT TTTATTTT TTCAGTTTTT chrX:3099247-3099367 67 5.26e-05 GCTCGGGTAT TTTATTTT TAGCATGCAG chr3L:14202454-14202574 90 5.26e-05 GCTGTTGGAA TTTATTTT TTCGCTCATC chr3L:8775136-8775256 113 5.26e-05 GTGTGTTCGC TTTATTTT chr3L:17939795-17939915 55 5.26e-05 GTGTACTCCA TTTATTTT AAAGTTGCCT chr3L:13256298-13256418 19 5.26e-05 CGACTGTTGC TTTATTTT ACAGCCCGTT chrX:5772551-5772671 111 6.95e-05 CTCAGCTTTC TTTTCTTT TC chrX:10547745-10547865 51 6.95e-05 ATGCGCTTTG TTTTCTTT GTTATTTGGC chr3L:12111212-12111332 90 6.95e-05 TTTCCATCGt ttttcttt cttcttcttc chr2R:7308900-7309020 72 8.64e-05 GAATTTCAAT TTCATTTT GCACAACAAA chr3L:3099175-3099295 54 8.64e-05 TCAAATGCCT TTCATTTT CCTTGTGCGA chr2R:16310492-16310612 67 1.04e-04 CCACGAGCAT TTTGTTTT TATGGGCTCC chr3R:30095456-30095576 99 1.04e-04 TCGCCGACTT TTTGTTTT CATTATTTTC chr2R:23815993-23816113 90 1.04e-04 GCCGAATGCC TTTGTTTT GCTTGTGTTT chrX:16940564-16940684 57 1.20e-04 GCGCAGAACT TTCTCTTT TCACAAATTC chr2L:7522611-7522731 92 1.20e-04 AACTTTTCAC TTCTCTTT CCCGGCAAAA chr2L:16816818-16816938 83 1.54e-04 CAGTGTGATA TTTTTTTG TGTGTTTGTT chr3L:16165468-16165588 15 1.54e-04 TGTCACTCGA TTTTTTTG CGGTTTTTCT chr2L:13886758-13886878 71 1.54e-04 TTTTCCCTTA TTTACTTT CTGCTATTTT chrX:14868523-14868643 93 1.54e-04 AGCAAACAAG TTTACTTT TGCGGCTCCG chr3R:14651345-14651465 61 1.54e-04 TGTTAACTCG TTTTTTTG GTCCAACTTG chr2R:19867336-19867456 40 1.89e-04 GACTTTCGTT TTCGTTTT TGCTTTTGAT chr2R:5683958-5684078 2 1.89e-04 C TTATTTTT TCAAGGCGTT chr2R:14433383-14433503 70 1.89e-04 GTTTCGATTT TTCGTTTT TTACCCATTT chr2R:11832062-11832182 38 1.89e-04 GCTCGCTTGG TTATTTTT CCAGCAATTC chr3L:5571220-5571340 111 1.89e-04 GTTCGTTTGC TTATTTTT CT chrX:2031230-2031350 109 1.89e-04 ACAGTTGCAG TTATTTTT CACC chr2L:20486853-20486973 2 2.06e-04 A TTTTTTGT GCAGGCGCGT chr2L:8274256-8274376 60 2.06e-04 GCTTGTCATG TTTTTTGT ACATATTTAT chr3R:29818982-29819102 17 2.39e-04 CCCCGAGACT TTCTTTTG CAAGAATTCC chr2R:8985592-8985712 48 2.39e-04 GGGGAAAACT TTCACTTT AACGCGGGAG chr2R:5691888-5692008 78 2.39e-04 TCTCCGCAGG TTCACTTT CGTTTGGTGG chr3R:15427306-15427426 99 2.39e-04 ACACAAAAGT TTCACTTT CTTCGCAACA chr3R:9222509-9222629 24 2.73e-04 gctgtgcATA TTTATTTG ACTTTGCCTT chr3L:15101743-15101863 85 2.73e-04 TTGGCCTGCA TTTGCTTT GTTGCTGGAT chr3L:11320230-11320350 53 2.73e-04 tctgctccgc tttgctTT TATTATTTTC chrX:2649132-2649252 79 3.08e-04 TGTTTGCTTG TTGTTTTT GTATGTATGG chr2R:10236256-10236376 28 3.25e-04 TTGCCTCGGA TTCTTTGT TGCGCAACTG chr3L:15108265-15108385 71 4.08e-04 CGTCCTCTTC TTCATTTG CTTCTGGCTG chr3R:26797881-26798001 62 4.08e-04 GCACTTCCAC TTCATTTG AGTCGCAAGC chr2R:18945630-18945750 71 4.08e-04 CAGCCATCGC TTCATTTG CATGAGTGAG chr3R:19623423-19623543 64 4.08e-04 GACAATTGGA TTCGCTTT GACTTCAAGT chr3L:9549618-9549738 74 4.25e-04 GCAGTTGGGC TTTGTTTG CTGGCCATCC chr3R:16357021-16357141 63 4.60e-04 CGAGCGTTAG TTGATTTT TCCGCTCGTT chr2R:14337673-14337793 38 4.94e-04 CTCGACTTCA GTTTTTTT CGGCGGCTAC chr2R:21382947-21383067 111 5.26e-04 CTCCGTTTTG TTCTCTTG TT chr3L:1866501-1866621 25 5.26e-04 CTTGTCGGGC TTCTCTTG CCAATATAAA chr2L:16536584-16536704 1 5.60e-04 . tttgttgt tGCTGGACTT chrX:9030023-9030143 110 5.60e-04 gggattggga ttTGTTGT AGC chr3R:25331041-25331161 107 6.27e-04 GTCAGTCATT TTAACTTT GTTTAG chr2R:11082301-11082421 102 6.27e-04 CAGGCGGAAC TTGTCTTT GGGCCAAAAA chr3R:14474921-14475041 69 6.27e-04 CGCAATTTAT TTAACTTT TTTACAGCTT chr2R:18312118-18312238 34 6.94e-04 TTACATGCAT TTCTCTGT GCCTCTCCGC chr3R:27218969-27219089 3 6.94e-04 GA TTTTTTAT ACTCCTTCCC chr2R:12460724-12460844 17 1.03e-03 CGTTAGCAAC GTTGTTTT CATTTCGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10787804-10787924 1.8e-05 17_[+1]_95 chr2R:14027223-14027343 1.8e-05 27_[+1]_85 chrX:20244470-20244590 1.8e-05 82_[+1]_30 chrX:4386434-4386554 1.8e-05 7_[+1]_105 chr2L:20908184-20908304 1.8e-05 79_[+1]_33 chr2R:12635746-12635866 1.8e-05 58_[+1]_54 chr3L:19696195-19696315 1.8e-05 43_[+1]_69 chr2R:20574477-20574597 1.8e-05 81_[+1]_31 chr3R:21896234-21896354 1.8e-05 49_[+1]_63 chr3L:6249266-6249386 1.8e-05 85_[+1]_27 chr3R:26906278-26906398 1.8e-05 55_[+1]_57 chr3L:10712966-10713086 1.8e-05 12_[+1]_100 chr2R:15483742-15483862 1.8e-05 51_[+1]_61 chrX:10721335-10721455 1.8e-05 36_[+1]_76 chr3R:13974872-13974992 1.8e-05 8_[+1]_104 chr3R:9897584-9897704 1.8e-05 25_[+1]_87 chr2L:4588936-4589056 1.8e-05 25_[+1]_87 chr3R:21704591-21704711 1.8e-05 45_[+1]_67 chr2R:22572700-22572820 1.8e-05 2_[+1]_110 chr3R:19036634-19036754 1.8e-05 110_[+1]_2 chr2L:14177704-14177824 3.5e-05 93_[+1]_19 chr3R:13992280-13992400 3.5e-05 26_[+1]_86 chr2R:12533932-12534052 3.5e-05 99_[+1]_13 chr3L:17985356-17985476 3.5e-05 58_[+1]_54 chr3L:14515778-14515898 3.5e-05 77_[+1]_35 chrX:2361143-2361263 3.5e-05 81_[+1]_31 chr3L:18162330-18162450 3.5e-05 3_[+1]_109 chr3L:2873242-2873362 5.3e-05 68_[+1]_44 chr2R:7289649-7289769 5.3e-05 49_[+1]_63 chr3R:25205766-25205886 5.3e-05 55_[+1]_57 chr2L:7702919-7703039 5.3e-05 21_[+1]_91 chrX:1574416-1574536 5.3e-05 66_[+1]_46 chrX:3099247-3099367 5.3e-05 66_[+1]_46 chr3L:14202454-14202574 5.3e-05 89_[+1]_23 chr3L:8775136-8775256 5.3e-05 112_[+1] chr3L:17939795-17939915 5.3e-05 54_[+1]_58 chr3L:13256298-13256418 5.3e-05 18_[+1]_94 chrX:5772551-5772671 7e-05 110_[+1]_2 chrX:10547745-10547865 7e-05 50_[+1]_62 chr3L:12111212-12111332 7e-05 89_[+1]_23 chr2R:7308900-7309020 8.6e-05 71_[+1]_41 chr3L:3099175-3099295 8.6e-05 53_[+1]_59 chr2R:16310492-16310612 0.0001 66_[+1]_46 chr3R:30095456-30095576 0.0001 98_[+1]_14 chr2R:23815993-23816113 0.0001 89_[+1]_23 chrX:16940564-16940684 0.00012 56_[+1]_56 chr2L:7522611-7522731 0.00012 91_[+1]_21 chr2L:16816818-16816938 0.00015 82_[+1]_30 chr3L:16165468-16165588 0.00015 14_[+1]_98 chr2L:13886758-13886878 0.00015 70_[+1]_42 chrX:14868523-14868643 0.00015 92_[+1]_20 chr3R:14651345-14651465 0.00015 60_[+1]_52 chr2R:19867336-19867456 0.00019 39_[+1]_73 chr2R:5683958-5684078 0.00019 1_[+1]_111 chr2R:14433383-14433503 0.00019 69_[+1]_43 chr2R:11832062-11832182 0.00019 37_[+1]_75 chr3L:5571220-5571340 0.00019 110_[+1]_2 chrX:2031230-2031350 0.00019 108_[+1]_4 chr2L:20486853-20486973 0.00021 1_[+1]_111 chr2L:8274256-8274376 0.00021 59_[+1]_53 chr3R:29818982-29819102 0.00024 16_[+1]_96 chr2R:8985592-8985712 0.00024 47_[+1]_65 chr2R:5691888-5692008 0.00024 77_[+1]_35 chr3R:15427306-15427426 0.00024 98_[+1]_14 chr3R:9222509-9222629 0.00027 23_[+1]_89 chr3L:15101743-15101863 0.00027 84_[+1]_28 chr3L:11320230-11320350 0.00027 52_[+1]_60 chrX:2649132-2649252 0.00031 78_[+1]_34 chr2R:10236256-10236376 0.00032 27_[+1]_85 chr3L:15108265-15108385 0.00041 70_[+1]_42 chr3R:26797881-26798001 0.00041 61_[+1]_51 chr2R:18945630-18945750 0.00041 70_[+1]_42 chr3R:19623423-19623543 0.00041 63_[+1]_49 chr3L:9549618-9549738 0.00042 73_[+1]_39 chr3R:16357021-16357141 0.00046 62_[+1]_50 chr2R:14337673-14337793 0.00049 37_[+1]_75 chr2R:21382947-21383067 0.00053 110_[+1]_2 chr3L:1866501-1866621 0.00053 24_[+1]_88 chr2L:16536584-16536704 0.00056 [+1]_112 chrX:9030023-9030143 0.00056 109_[+1]_3 chr3R:25331041-25331161 0.00063 106_[+1]_6 chr2R:11082301-11082421 0.00063 101_[+1]_11 chr3R:14474921-14475041 0.00063 68_[+1]_44 chr2R:18312118-18312238 0.00069 33_[+1]_79 chr3R:27218969-27219089 0.00069 2_[+1]_110 chr2R:12460724-12460844 0.001 16_[+1]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=86 chr3L:10787804-10787924 ( 18) TTTTTTTT 1 chr2R:14027223-14027343 ( 28) TTTTTTTT 1 chrX:20244470-20244590 ( 83) TTTTTTTT 1 chrX:4386434-4386554 ( 8) TTTTTTTT 1 chr2L:20908184-20908304 ( 80) TTTTTTTT 1 chr2R:12635746-12635866 ( 59) TTTTTTTT 1 chr3L:19696195-19696315 ( 44) TTTTTTTT 1 chr2R:20574477-20574597 ( 82) TTTTTTTT 1 chr3R:21896234-21896354 ( 50) TTTTTTTT 1 chr3L:6249266-6249386 ( 86) TTTTTTTT 1 chr3R:26906278-26906398 ( 56) TTTTTTTT 1 chr3L:10712966-10713086 ( 13) TTTTTTTT 1 chr2R:15483742-15483862 ( 52) TTTTTTTT 1 chrX:10721335-10721455 ( 37) TTTTTTTT 1 chr3R:13974872-13974992 ( 9) TTTTTTTT 1 chr3R:9897584-9897704 ( 26) TTTTTTTT 1 chr2L:4588936-4589056 ( 26) TTTTTTTT 1 chr3R:21704591-21704711 ( 46) TTTTTTTT 1 chr2R:22572700-22572820 ( 3) TTTTTTTT 1 chr3R:19036634-19036754 ( 111) TTTTTTTT 1 chr2L:14177704-14177824 ( 94) TTCTTTTT 1 chr3R:13992280-13992400 ( 27) TTCTTTTT 1 chr2R:12533932-12534052 ( 100) TTCTTTTT 1 chr3L:17985356-17985476 ( 59) TTCTTTTT 1 chr3L:14515778-14515898 ( 78) TTCTTTTT 1 chrX:2361143-2361263 ( 82) TTCTTTTT 1 chr3L:18162330-18162450 ( 4) TTCTTTTT 1 chr3L:2873242-2873362 ( 69) TTTATTTT 1 chr2R:7289649-7289769 ( 50) TTTATTTT 1 chr3R:25205766-25205886 ( 56) TTTATTTT 1 chr2L:7702919-7703039 ( 22) TTTATTTT 1 chrX:1574416-1574536 ( 67) TTTATTTT 1 chrX:3099247-3099367 ( 67) TTTATTTT 1 chr3L:14202454-14202574 ( 90) TTTATTTT 1 chr3L:8775136-8775256 ( 113) TTTATTTT 1 chr3L:17939795-17939915 ( 55) TTTATTTT 1 chr3L:13256298-13256418 ( 19) TTTATTTT 1 chrX:5772551-5772671 ( 111) TTTTCTTT 1 chrX:10547745-10547865 ( 51) TTTTCTTT 1 chr3L:12111212-12111332 ( 90) TTTTCTTT 1 chr2R:7308900-7309020 ( 72) TTCATTTT 1 chr3L:3099175-3099295 ( 54) TTCATTTT 1 chr2R:16310492-16310612 ( 67) TTTGTTTT 1 chr3R:30095456-30095576 ( 99) TTTGTTTT 1 chr2R:23815993-23816113 ( 90) TTTGTTTT 1 chrX:16940564-16940684 ( 57) TTCTCTTT 1 chr2L:7522611-7522731 ( 92) TTCTCTTT 1 chr2L:16816818-16816938 ( 83) TTTTTTTG 1 chr3L:16165468-16165588 ( 15) TTTTTTTG 1 chr2L:13886758-13886878 ( 71) TTTACTTT 1 chrX:14868523-14868643 ( 93) TTTACTTT 1 chr3R:14651345-14651465 ( 61) TTTTTTTG 1 chr2R:19867336-19867456 ( 40) TTCGTTTT 1 chr2R:5683958-5684078 ( 2) TTATTTTT 1 chr2R:14433383-14433503 ( 70) TTCGTTTT 1 chr2R:11832062-11832182 ( 38) TTATTTTT 1 chr3L:5571220-5571340 ( 111) TTATTTTT 1 chrX:2031230-2031350 ( 109) TTATTTTT 1 chr2L:20486853-20486973 ( 2) TTTTTTGT 1 chr2L:8274256-8274376 ( 60) TTTTTTGT 1 chr3R:29818982-29819102 ( 17) TTCTTTTG 1 chr2R:8985592-8985712 ( 48) TTCACTTT 1 chr2R:5691888-5692008 ( 78) TTCACTTT 1 chr3R:15427306-15427426 ( 99) TTCACTTT 1 chr3R:9222509-9222629 ( 24) TTTATTTG 1 chr3L:15101743-15101863 ( 85) TTTGCTTT 1 chr3L:11320230-11320350 ( 53) TTTGCTTT 1 chrX:2649132-2649252 ( 79) TTGTTTTT 1 chr2R:10236256-10236376 ( 28) TTCTTTGT 1 chr3L:15108265-15108385 ( 71) TTCATTTG 1 chr3R:26797881-26798001 ( 62) TTCATTTG 1 chr2R:18945630-18945750 ( 71) TTCATTTG 1 chr3R:19623423-19623543 ( 64) TTCGCTTT 1 chr3L:9549618-9549738 ( 74) TTTGTTTG 1 chr3R:16357021-16357141 ( 63) TTGATTTT 1 chr2R:14337673-14337793 ( 38) GTTTTTTT 1 chr2R:21382947-21383067 ( 111) TTCTCTTG 1 chr3L:1866501-1866621 ( 25) TTCTCTTG 1 chr2L:16536584-16536704 ( 1) TTTGTTGT 1 chrX:9030023-9030143 ( 110) TTTGTTGT 1 chr3R:25331041-25331161 ( 107) TTAACTTT 1 chr2R:11082301-11082421 ( 102) TTGTCTTT 1 chr3R:14474921-14475041 ( 69) TTAACTTT 1 chr2R:18312118-18312238 ( 34) TTCTCTGT 1 chr3R:27218969-27219089 ( 3) TTTTTTAT 1 chr2R:12460724-12460844 ( 17) GTTGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.36424 E= 3.0e-023 -1307 -1307 -343 194 -1307 -1307 -1307 197 -186 27 -284 125 14 -1307 -84 119 -1307 -13 -1307 161 -1307 -1307 -1307 197 -444 -1307 -184 185 -1307 -1307 -97 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 86 E= 3.0e-023 0.000000 0.000000 0.023256 0.976744 0.000000 0.000000 0.000000 1.000000 0.069767 0.290698 0.034884 0.604651 0.279070 0.000000 0.139535 0.581395 0.000000 0.220930 0.000000 0.779070 0.000000 0.000000 0.000000 1.000000 0.011628 0.000000 0.069767 0.918605 0.000000 0.000000 0.127907 0.872093 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TT[TC][TA][TC]TTT -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGCWGC MEME-2 width = 8 sites = 55 llr = 472 E-value = 1.1e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::7::511 pos.-specific C :a::a1:9 probability G a::a:19: matrix T ::3::3:: bits 2.0 ** ** 1.8 ** ** 1.6 ** ** * 1.4 ** ** ** Relative 1.2 ** ** ** Entropy 1.0 ***** ** (12.4 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel GCAGCAGC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4667180-4667300 31 1.42e-05 agacgcagca gcagcagc aacatcacag chr2R:14027223-14027343 102 1.42e-05 aacaacagca gcagcagc aacaacaaca chr2R:22933921-22934041 34 1.42e-05 TCACACATGC GCAGCAGC TGATGCGCGA chr3L:6219671-6219791 22 1.42e-05 CTGCGCCTGC GCAGCAGC TTAAGCTTCT chr3L:8871163-8871283 33 1.42e-05 GCGGCAACTT GCAGCAGC TGAGCTGGTT chr3L:10777982-10778102 17 1.42e-05 agcagaagca gcagcagc agAAATTCGC chr2L:14499634-14499754 76 1.42e-05 aaaagcaaaa gcaGCAGC TGCCACCGTG chr2R:22156727-22156847 107 1.42e-05 CAATGGACTC GCAGCAGC AGTCGC chr2R:6547415-6547535 112 1.42e-05 TGGCAAAGCG GCAGCAGC A chrX:14868523-14868643 72 1.42e-05 AATTGGGTCA GCAGCAGC GACAGCAAAC chr2R:18313221-18313341 69 1.42e-05 GTCGgcggca gcagcagc agcggcagcc chr3R:16206238-16206358 112 1.42e-05 ATCACAagca gcagcagc a chr2R:7145244-7145364 33 1.42e-05 GAGCCAAGAT GCAGCAGC GTTCACATAA chr3L:15105718-15105838 112 1.42e-05 acagccagca gcagcagc a chr3L:4307817-4307937 40 1.42e-05 CTTTTGCTCG GCAGCAGC TCGCCGAATG chr2R:14433383-14433503 11 2.85e-05 GACAGCAACG GCAGCTGC TCCaaaaaca chr2R:20574477-20574597 97 2.85e-05 TTTTTTGTGA GCAGCTGC AGGCGCATAT chr2R:19578808-19578928 27 2.85e-05 TCTGGCGACT GCAGCTGC CAGGGGAAGG chrX:18675408-18675528 65 2.85e-05 TTCTGGTTTG GCAGCTGC TTCTTGGGAA chr2R:13462994-13463114 74 4.27e-05 CAGACGACAA GCTGCAGC AATGTCCATG chr2R:7308701-7308821 50 4.27e-05 TGGCCTGCAG GCTGCAGC CCGccatcca chr3R:16357021-16357141 1 5.71e-05 . GCTGCTGC CGCCAACGTG chr2R:19867336-19867456 60 5.71e-05 CTTTTGATAt gctgctgc cgtgctgctg chr3R:13992280-13992400 97 5.71e-05 TACGTTTGTT GCTGCTGC TTTTTTGCTT chr3L:20734025-20734145 105 5.71e-05 gatgtgtgta gctgctgc gatgatgt chr2L:7702919-7703039 33 5.71e-05 TTATTTTGGT GCTGCTGC AATCTGGCGT chr2R:10694101-10694221 102 5.71e-05 TTctgctgat gctgctgc ttctgctgGA chr2L:7522611-7522731 67 5.71e-05 CCAAACAAAT GCTGCTGC TTATGGCAAC chr3R:17702103-17702223 41 5.71e-05 CTGGCTGTCA GCTGCTGC CGATGGAACC chr3R:19623423-19623543 40 5.71e-05 GCGATCTTTT GCTGCTGC TCGCGTGACA chr3L:19021854-19021974 113 7.07e-05 TTGGAACTTG GCAGCCGC chr3R:27597386-27597506 60 7.07e-05 ATCAGGCCAT GCAGCCGC GCCCCCAAAC chr2R:23055101-23055221 6 7.07e-05 CCACT GCAGCCGC CCACCCCCCT chr3L:22421050-22421170 1 8.47e-05 . GCAGCGGC TGGGCAAGTC chr2R:10775342-10775462 14 8.47e-05 CAGCATCTGT GCAGCGGC CAGGCCAGGC chr3R:16232683-16232803 107 8.47e-05 AACAACAACC GCAGCGGC AACCCA chr3R:15433509-15433629 7 8.47e-05 GTCGTA GCAGCGGC AGAAGCGAGC chr2R:19149617-19149737 111 9.95e-05 AAAAAAAACA GCAGCAGA GG chr2L:847838-847958 74 9.95e-05 ATGCGGTGTG GCAGCAGA TGGCGGCGAC chr3R:9222509-9222629 1 1.13e-04 . gctgccgc tgtctgctgt chr2R:22080370-22080490 77 1.13e-04 AGAGAGCACA GCTGCCGC CGGTGCATGT chr3L:8882700-8882820 98 1.13e-04 Tgccactgcc gctgccgc tggccccgat chr3L:15107499-15107619 29 1.13e-04 CAAAGCTGTA GCTGCCGC CAGAAATTGC chr3L:9549618-9549738 54 1.42e-04 GCCACAAATT GCAGCTGA CTGCAGTTGG chr3L:3074869-3074989 36 1.42e-04 GAGGCCAACG GCAGCTGA CGGAAACACA chr2L:635131-635251 29 1.42e-04 GGGACAAGAA GCTGCGGC CAATCCCCTC chr3L:20984553-20984673 53 1.42e-04 GACAATTCAT GCAGCTGA CCGGCGGGAA chr3L:12095559-12095679 50 1.42e-04 GCCAAGTGTC GCAGCTGA CCCACATTCC chr2R:5683958-5684078 24 1.57e-04 GGCGTTGCAT GCAGCAAC ACGGTACGCA chr3R:20765497-20765617 66 1.57e-04 AAGGCAAGCG GCAGCAAC ACCGCATACA chrX:16647912-16648032 40 1.57e-04 TTGCGCAATC GCAGCAAC AAAACCAAGC chr3R:10828804-10828924 84 1.72e-04 TAAAATTTAT GCTGCAGA ATTATCCATA chr3L:10712966-10713086 109 1.72e-04 AATTTTACAT GCTGCAGA AATG chr2L:12423918-12424038 107 1.86e-04 CGCGATCGGC GCAGCTAC AGCTGT chr3L:16710072-16710192 34 2.15e-04 aacaaAAGCG GCTGCAAC CAAAAAAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4667180-4667300 1.4e-05 30_[+2]_82 chr2R:14027223-14027343 1.4e-05 101_[+2]_11 chr2R:22933921-22934041 1.4e-05 33_[+2]_79 chr3L:6219671-6219791 1.4e-05 21_[+2]_91 chr3L:8871163-8871283 1.4e-05 32_[+2]_80 chr3L:10777982-10778102 1.4e-05 16_[+2]_96 chr2L:14499634-14499754 1.4e-05 75_[+2]_37 chr2R:22156727-22156847 1.4e-05 106_[+2]_6 chr2R:6547415-6547535 1.4e-05 111_[+2]_1 chrX:14868523-14868643 1.4e-05 71_[+2]_41 chr2R:18313221-18313341 1.4e-05 68_[+2]_44 chr3R:16206238-16206358 1.4e-05 111_[+2]_1 chr2R:7145244-7145364 1.4e-05 32_[+2]_80 chr3L:15105718-15105838 1.4e-05 111_[+2]_1 chr3L:4307817-4307937 1.4e-05 39_[+2]_73 chr2R:14433383-14433503 2.8e-05 10_[+2]_102 chr2R:20574477-20574597 2.8e-05 96_[+2]_16 chr2R:19578808-19578928 2.8e-05 26_[+2]_86 chrX:18675408-18675528 2.8e-05 64_[+2]_48 chr2R:13462994-13463114 4.3e-05 73_[+2]_39 chr2R:7308701-7308821 4.3e-05 49_[+2]_63 chr3R:16357021-16357141 5.7e-05 [+2]_112 chr2R:19867336-19867456 5.7e-05 59_[+2]_53 chr3R:13992280-13992400 5.7e-05 96_[+2]_16 chr3L:20734025-20734145 5.7e-05 104_[+2]_8 chr2L:7702919-7703039 5.7e-05 32_[+2]_80 chr2R:10694101-10694221 5.7e-05 101_[+2]_11 chr2L:7522611-7522731 5.7e-05 66_[+2]_46 chr3R:17702103-17702223 5.7e-05 40_[+2]_72 chr3R:19623423-19623543 5.7e-05 39_[+2]_73 chr3L:19021854-19021974 7.1e-05 112_[+2] chr3R:27597386-27597506 7.1e-05 59_[+2]_53 chr2R:23055101-23055221 7.1e-05 5_[+2]_107 chr3L:22421050-22421170 8.5e-05 [+2]_112 chr2R:10775342-10775462 8.5e-05 13_[+2]_99 chr3R:16232683-16232803 8.5e-05 106_[+2]_6 chr3R:15433509-15433629 8.5e-05 6_[+2]_106 chr2R:19149617-19149737 0.0001 110_[+2]_2 chr2L:847838-847958 0.0001 73_[+2]_39 chr3R:9222509-9222629 0.00011 [+2]_112 chr2R:22080370-22080490 0.00011 76_[+2]_36 chr3L:8882700-8882820 0.00011 97_[+2]_15 chr3L:15107499-15107619 0.00011 28_[+2]_84 chr3L:9549618-9549738 0.00014 53_[+2]_59 chr3L:3074869-3074989 0.00014 35_[+2]_77 chr2L:635131-635251 0.00014 28_[+2]_84 chr3L:20984553-20984673 0.00014 52_[+2]_60 chr3L:12095559-12095679 0.00014 49_[+2]_63 chr2R:5683958-5684078 0.00016 23_[+2]_89 chr3R:20765497-20765617 0.00016 65_[+2]_47 chrX:16647912-16648032 0.00016 39_[+2]_73 chr3R:10828804-10828924 0.00017 83_[+2]_29 chr3L:10712966-10713086 0.00017 108_[+2]_4 chr2L:12423918-12424038 0.00019 106_[+2]_6 chr3L:16710072-16710192 0.00022 33_[+2]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGCWGC width=8 seqs=55 chr3R:4667180-4667300 ( 31) GCAGCAGC 1 chr2R:14027223-14027343 ( 102) GCAGCAGC 1 chr2R:22933921-22934041 ( 34) GCAGCAGC 1 chr3L:6219671-6219791 ( 22) GCAGCAGC 1 chr3L:8871163-8871283 ( 33) GCAGCAGC 1 chr3L:10777982-10778102 ( 17) GCAGCAGC 1 chr2L:14499634-14499754 ( 76) GCAGCAGC 1 chr2R:22156727-22156847 ( 107) GCAGCAGC 1 chr2R:6547415-6547535 ( 112) GCAGCAGC 1 chrX:14868523-14868643 ( 72) GCAGCAGC 1 chr2R:18313221-18313341 ( 69) GCAGCAGC 1 chr3R:16206238-16206358 ( 112) GCAGCAGC 1 chr2R:7145244-7145364 ( 33) GCAGCAGC 1 chr3L:15105718-15105838 ( 112) GCAGCAGC 1 chr3L:4307817-4307937 ( 40) GCAGCAGC 1 chr2R:14433383-14433503 ( 11) GCAGCTGC 1 chr2R:20574477-20574597 ( 97) GCAGCTGC 1 chr2R:19578808-19578928 ( 27) GCAGCTGC 1 chrX:18675408-18675528 ( 65) GCAGCTGC 1 chr2R:13462994-13463114 ( 74) GCTGCAGC 1 chr2R:7308701-7308821 ( 50) GCTGCAGC 1 chr3R:16357021-16357141 ( 1) GCTGCTGC 1 chr2R:19867336-19867456 ( 60) GCTGCTGC 1 chr3R:13992280-13992400 ( 97) GCTGCTGC 1 chr3L:20734025-20734145 ( 105) GCTGCTGC 1 chr2L:7702919-7703039 ( 33) GCTGCTGC 1 chr2R:10694101-10694221 ( 102) GCTGCTGC 1 chr2L:7522611-7522731 ( 67) GCTGCTGC 1 chr3R:17702103-17702223 ( 41) GCTGCTGC 1 chr3R:19623423-19623543 ( 40) GCTGCTGC 1 chr3L:19021854-19021974 ( 113) GCAGCCGC 1 chr3R:27597386-27597506 ( 60) GCAGCCGC 1 chr2R:23055101-23055221 ( 6) GCAGCCGC 1 chr3L:22421050-22421170 ( 1) GCAGCGGC 1 chr2R:10775342-10775462 ( 14) GCAGCGGC 1 chr3R:16232683-16232803 ( 107) GCAGCGGC 1 chr3R:15433509-15433629 ( 7) GCAGCGGC 1 chr2R:19149617-19149737 ( 111) GCAGCAGA 1 chr2L:847838-847958 ( 74) GCAGCAGA 1 chr3R:9222509-9222629 ( 1) GCTGCCGC 1 chr2R:22080370-22080490 ( 77) GCTGCCGC 1 chr3L:8882700-8882820 ( 98) GCTGCCGC 1 chr3L:15107499-15107619 ( 29) GCTGCCGC 1 chr3L:9549618-9549738 ( 54) GCAGCTGA 1 chr3L:3074869-3074989 ( 36) GCAGCTGA 1 chr2L:635131-635251 ( 29) GCTGCGGC 1 chr3L:20984553-20984673 ( 53) GCAGCTGA 1 chr3L:12095559-12095679 ( 50) GCAGCTGA 1 chr2R:5683958-5684078 ( 24) GCAGCAAC 1 chr3R:20765497-20765617 ( 66) GCAGCAAC 1 chrX:16647912-16648032 ( 40) GCAGCAAC 1 chr3R:10828804-10828924 ( 84) GCTGCAGA 1 chr3L:10712966-10713086 ( 109) GCTGCAGA 1 chr2L:12423918-12424038 ( 107) GCAGCTAC 1 chr3L:16710072-16710192 ( 34) GCTGCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6641 E= 1.1e-019 -1243 -1243 200 -1243 -1243 205 -1243 -1243 137 -1243 -1243 44 -1243 -1243 200 -1243 -1243 205 -1243 -1243 84 -93 -146 36 -148 -1243 186 -1243 -80 182 -1243 -1243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 1.1e-019 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.654545 0.000000 0.000000 0.345455 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.127273 0.090909 0.327273 0.090909 0.000000 0.909091 0.000000 0.145455 0.854545 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 regular expression -------------------------------------------------------------------------------- GC[AT]GC[AT]GC -------------------------------------------------------------------------------- Time 14.69 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAMAA MEME-3 width = 8 sites = 76 llr = 610 E-value = 2.1e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A aa7866aa pos.-specific C ::3114:: probability G ::::3::: matrix T :::1:::: bits 2.0 * ** 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 **** *** (11.6 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9222509-9222629 94 1.68e-05 aagaagacag aaaaaaaa caacaGAAGC chr2R:19149617-19149737 100 1.68e-05 GCTGAAAATA AAAAAAAA ACAGCAGCAG chr2L:14177704-14177824 28 1.68e-05 AGCCCGCAAA AAAAAAAA AGAAATTACA chr3L:14456057-14456177 95 1.68e-05 GTCCaaacaa aaaaaaaa aaagacaaaa chr2L:10794177-10794297 31 1.68e-05 caaaaaacaa aaaaaaaa gcaagacaag chr2R:14433383-14433503 31 1.68e-05 Caaaaacaaa aaaaaaaa aaacaaaaac chr3R:20765497-20765617 25 1.68e-05 aaatcagcca aaaaaaaa ccaaacaaaa chr2R:17469834-17469954 11 1.68e-05 CAAATACAGA AAAAAAAA TAGGTGAAAA chr2R:10775342-10775462 85 1.68e-05 GGGATCGAAT AAAAAAAA CGTACGTATA chr2R:21301767-21301887 56 1.68e-05 ATCTCGGCCA AAAAAAAA GCACCCACAT chrX:10932333-10932453 86 1.68e-05 GCTATAAAAA AAAAAAAA TAAAAAATTG chr2L:7522611-7522731 49 1.68e-05 AACAAAAAGA AAAAAAAA CCAAACAAAT chr3R:19064211-19064331 69 1.68e-05 CAGCTCGCCA AAAAAAAA CATCCTTTTT chrX:17732261-17732381 71 1.68e-05 AAAAACGAAA AAAAAAAA ACAGAAAAAG chr3L:2874174-2874294 108 1.68e-05 GCAGCGAGGA AAAAAAAA CACAA chr2L:847838-847958 43 1.68e-05 acaaaaacaa aaaaaaaa caaaGCAACC chr2L:14183058-14183178 14 1.68e-05 agagcaaaag aaaaaaaa aagctaagaa chr3L:12095559-12095679 75 1.68e-05 TCCTGGGGGA AAAAAAAA CGAGCCACCA chr2L:20486853-20486973 61 1.68e-05 AAAAAACATT AAAAAAAA CAAAAAAAAT chr2L:16536584-16536704 72 3.28e-05 GCGCAACAAC AAAAACAA AGGGAACGCA chr3L:2439170-2439290 4 3.28e-05 aac aaaaacaa ataaccgaca chrX:4386434-4386554 85 3.28e-05 AAACAAGGAG AAAAACAA ATAAAATAAA chr3R:16232683-16232803 58 3.28e-05 CCATAAGCAG AAAAACAA AAAAATAAAC chr2L:8142924-8143044 78 3.28e-05 CGCGATCAGA AAAAACAA CCGAGAAAAC chr2R:23815993-23816113 34 3.28e-05 TGGTAAAAAC AAAAACAA AACGGCGATT chr3R:19254200-19254320 42 3.28e-05 GAGTTCCGCA AAAAACAA CGAAAATAAA chr3L:4307817-4307937 84 3.28e-05 CGGGTATTCC AAAAACAA GTTTTCGGCC chrX:16940564-16940684 96 6.55e-05 CGACaacaag aacaaaaa cgacaaactg chr3L:15641470-15641590 72 6.55e-05 AGCGGCATAA AAAAGAAA GGAAGAGAGT chr3L:19021854-19021974 77 6.55e-05 GGGGGAAGGA AACAAAAA GCCTCCAGAT chr2R:7308900-7309020 84 6.55e-05 CATTTTGCAC AACAAAAA GCGAGCTAAA chr2R:22156727-22156847 63 6.55e-05 AAAACGAAAC AACAAAAA GTGGTGCAAG chr3R:13816395-13816515 88 6.55e-05 GAGAAATGAA AAAAGAAA AGGCAAGAAA chr3R:7322692-7322812 89 6.55e-05 TGAAATGaaa aaaagaaa aaagaaatga chrX:14868523-14868643 21 6.55e-05 AGAGCACGGT AACAAAAA TTGTTGTAAA chrX:1570472-1570592 110 6.55e-05 GCGTGCGATT AACAAAAA TGC chr3L:14515778-14515898 94 6.55e-05 TTGTTTGATA AAAAGAAA GTTGACATAA chr3L:10787804-10787924 71 9.67e-05 TTTTTTACAC AAAAGCAA GCGGTGGCGT chr2R:14027223-14027343 110 9.67e-05 cagcagcagc aacaacaa caG chr3R:9964703-9964823 3 9.67e-05 TC AACAACAA CCgctgggga chr3L:16710072-16710192 21 9.67e-05 gaactacaac aacaacaa AAGCGGCTGC chr2L:14499634-14499754 55 9.67e-05 accgaaaagc aaaagcaa cagaaaagca chr3L:15246532-15246652 14 9.67e-05 GACTCCGCAT AAAAGCAA ATTTGTATGC chr3L:5867338-5867458 2 9.67e-05 c aacaacaa cagcaagagc chr3L:6442764-6442884 93 9.67e-05 Aaacaacaac aacaacaa caacagcaac chr3L:15105718-15105838 78 9.67e-05 cagcaaaggc aaaagcaa cagcaacaac chr2R:16839907-16840027 50 1.29e-04 CAACGTCGAT AAAACAAA TGAAGAAAAC chr2R:12460724-12460844 82 1.29e-04 GGAAGGGCCT AAAACAAA TGTGGACCCG chr3R:6401330-6401450 24 1.75e-04 TACGTaagcc aaaaccaa aatccaaaac chr2R:11082301-11082421 2 1.75e-04 g aaaaccaa aaccaaaatc chrX:16647912-16648032 48 1.75e-04 TCGCAGCAAC AAAACCAA GCTGACCAGC chr3L:13255156-13255276 98 1.75e-04 AGGCACTTGT AAAACCAA CAGATAACCG chr2R:18313221-18313341 12 1.75e-04 gaaaaaaata aaaaccaa acaaaccaaa chr2R:7145244-7145364 7 1.75e-04 aggccc aaacacaa gcccaagcGA chr3R:16206238-16206358 87 1.91e-04 CTGCAGCATC AACAGCAA CGACAACATC chr3L:8882700-8882820 54 1.91e-04 AGGCGTGGGA AACAGCAA CACAGCTTGT chr3R:30192474-30192594 9 2.08e-04 CCGCGGCG AAATAAAA ACCCCGAGCC chr2R:9028890-9029010 36 2.08e-04 GTTACCAAAA AAATAAAA AGACAGCGTC chr2R:7086215-7086335 17 2.08e-04 CTGAAAAATG AAATAAAA ACTCGTTGCG chr3R:31248283-31248403 83 2.54e-04 GTGCACATTA AACACAAA TAATATGAAG chr2R:7909600-7909720 84 2.54e-04 aatgaaaacg aaacgaaa cgaaactgaa chr3L:8775136-8775256 16 2.54e-04 CCGAAACCGA AACCAAAA GGCAGCCTGC chr3L:18162330-18162450 25 2.54e-04 CGCGTGTCTC AAACGAAA CTGAAAGCGA chr3L:5835602-5835722 48 2.54e-04 AAAGCTTGGG AACCAAAA AGGCCAACAC chr3R:21089557-21089677 30 2.70e-04 TCAGCCAAGT AAATACAA ATACAACAAG chr3L:5571220-5571340 14 3.15e-04 CAATGGCCAA AACCACAA TGGAAGCCCG chr2L:4588936-4589056 99 3.63e-04 ATGGCAATGA AAATGAAA CCGAGTTCTG chr3R:6252967-6253087 96 3.63e-04 ATGCTCAGCG AAATGAAA ACGAGTTTAG chr3R:19112526-19112646 46 3.78e-04 agccaagTTT AACCGAAA CCATGGGCAA chr2L:7608195-7608315 86 3.78e-04 ATCAAATCGA AACCGAAA GCCAAGCCGA chr3L:3099175-3099295 88 3.78e-04 AAATCACCAG AACCGAAA GTCTCCCCAA chr3R:7978514-7978634 101 3.94e-04 GAGCCGGGCC CAAAAAAA CTACCTGTCT chr3R:19151226-19151346 32 4.40e-04 GGGTAAAAAT AAACCCAA AATGCAGTAA chr3L:1828101-1828221 37 4.55e-04 cccattccca aaccGCAA AAACACAGGC chr2R:6547415-6547535 58 5.03e-04 TGTAAAACAG AATAAAAA AAGGCGACTG chr3R:20835868-20835988 87 5.97e-04 CGCACCTGGT CAAAGAAA TGGGGTGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9222509-9222629 1.7e-05 93_[+3]_19 chr2R:19149617-19149737 1.7e-05 99_[+3]_13 chr2L:14177704-14177824 1.7e-05 27_[+3]_85 chr3L:14456057-14456177 1.7e-05 94_[+3]_18 chr2L:10794177-10794297 1.7e-05 30_[+3]_82 chr2R:14433383-14433503 1.7e-05 30_[+3]_82 chr3R:20765497-20765617 1.7e-05 24_[+3]_88 chr2R:17469834-17469954 1.7e-05 10_[+3]_102 chr2R:10775342-10775462 1.7e-05 84_[+3]_28 chr2R:21301767-21301887 1.7e-05 55_[+3]_57 chrX:10932333-10932453 1.7e-05 85_[+3]_27 chr2L:7522611-7522731 1.7e-05 48_[+3]_64 chr3R:19064211-19064331 1.7e-05 68_[+3]_44 chrX:17732261-17732381 1.7e-05 70_[+3]_42 chr3L:2874174-2874294 1.7e-05 107_[+3]_5 chr2L:847838-847958 1.7e-05 42_[+3]_70 chr2L:14183058-14183178 1.7e-05 13_[+3]_99 chr3L:12095559-12095679 1.7e-05 74_[+3]_38 chr2L:20486853-20486973 1.7e-05 60_[+3]_52 chr2L:16536584-16536704 3.3e-05 71_[+3]_41 chr3L:2439170-2439290 3.3e-05 3_[+3]_109 chrX:4386434-4386554 3.3e-05 84_[+3]_28 chr3R:16232683-16232803 3.3e-05 57_[+3]_55 chr2L:8142924-8143044 3.3e-05 77_[+3]_35 chr2R:23815993-23816113 3.3e-05 33_[+3]_79 chr3R:19254200-19254320 3.3e-05 41_[+3]_71 chr3L:4307817-4307937 3.3e-05 83_[+3]_29 chrX:16940564-16940684 6.5e-05 95_[+3]_17 chr3L:15641470-15641590 6.5e-05 71_[+3]_41 chr3L:19021854-19021974 6.5e-05 76_[+3]_36 chr2R:7308900-7309020 6.5e-05 83_[+3]_29 chr2R:22156727-22156847 6.5e-05 62_[+3]_50 chr3R:13816395-13816515 6.5e-05 87_[+3]_25 chr3R:7322692-7322812 6.5e-05 88_[+3]_24 chrX:14868523-14868643 6.5e-05 20_[+3]_92 chrX:1570472-1570592 6.5e-05 109_[+3]_3 chr3L:14515778-14515898 6.5e-05 93_[+3]_19 chr3L:10787804-10787924 9.7e-05 70_[+3]_42 chr2R:14027223-14027343 9.7e-05 109_[+3]_3 chr3R:9964703-9964823 9.7e-05 2_[+3]_110 chr3L:16710072-16710192 9.7e-05 20_[+3]_92 chr2L:14499634-14499754 9.7e-05 54_[+3]_58 chr3L:15246532-15246652 9.7e-05 13_[+3]_99 chr3L:5867338-5867458 9.7e-05 1_[+3]_111 chr3L:6442764-6442884 9.7e-05 92_[+3]_20 chr3L:15105718-15105838 9.7e-05 77_[+3]_35 chr2R:16839907-16840027 0.00013 49_[+3]_63 chr2R:12460724-12460844 0.00013 81_[+3]_31 chr3R:6401330-6401450 0.00018 23_[+3]_89 chr2R:11082301-11082421 0.00018 1_[+3]_111 chrX:16647912-16648032 0.00018 47_[+3]_65 chr3L:13255156-13255276 0.00018 97_[+3]_15 chr2R:18313221-18313341 0.00018 11_[+3]_101 chr2R:7145244-7145364 0.00018 6_[+3]_106 chr3R:16206238-16206358 0.00019 86_[+3]_26 chr3L:8882700-8882820 0.00019 53_[+3]_59 chr3R:30192474-30192594 0.00021 8_[+3]_104 chr2R:9028890-9029010 0.00021 35_[+3]_77 chr2R:7086215-7086335 0.00021 16_[+3]_96 chr3R:31248283-31248403 0.00025 82_[+3]_30 chr2R:7909600-7909720 0.00025 83_[+3]_29 chr3L:8775136-8775256 0.00025 15_[+3]_97 chr3L:18162330-18162450 0.00025 24_[+3]_88 chr3L:5835602-5835722 0.00025 47_[+3]_65 chr3R:21089557-21089677 0.00027 29_[+3]_83 chr3L:5571220-5571340 0.00031 13_[+3]_99 chr2L:4588936-4589056 0.00036 98_[+3]_14 chr3R:6252967-6253087 0.00036 95_[+3]_17 chr3R:19112526-19112646 0.00038 45_[+3]_67 chr2L:7608195-7608315 0.00038 85_[+3]_27 chr3L:3099175-3099295 0.00038 87_[+3]_25 chr3R:7978514-7978634 0.00039 100_[+3]_12 chr3R:19151226-19151346 0.00044 31_[+3]_81 chr3L:1828101-1828221 0.00046 36_[+3]_76 chr2R:6547415-6547535 0.0005 57_[+3]_55 chr3R:20835868-20835988 0.0006 86_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAMAA width=8 seqs=76 chr3R:9222509-9222629 ( 94) AAAAAAAA 1 chr2R:19149617-19149737 ( 100) AAAAAAAA 1 chr2L:14177704-14177824 ( 28) AAAAAAAA 1 chr3L:14456057-14456177 ( 95) AAAAAAAA 1 chr2L:10794177-10794297 ( 31) AAAAAAAA 1 chr2R:14433383-14433503 ( 31) AAAAAAAA 1 chr3R:20765497-20765617 ( 25) AAAAAAAA 1 chr2R:17469834-17469954 ( 11) AAAAAAAA 1 chr2R:10775342-10775462 ( 85) AAAAAAAA 1 chr2R:21301767-21301887 ( 56) AAAAAAAA 1 chrX:10932333-10932453 ( 86) AAAAAAAA 1 chr2L:7522611-7522731 ( 49) AAAAAAAA 1 chr3R:19064211-19064331 ( 69) AAAAAAAA 1 chrX:17732261-17732381 ( 71) AAAAAAAA 1 chr3L:2874174-2874294 ( 108) AAAAAAAA 1 chr2L:847838-847958 ( 43) AAAAAAAA 1 chr2L:14183058-14183178 ( 14) AAAAAAAA 1 chr3L:12095559-12095679 ( 75) AAAAAAAA 1 chr2L:20486853-20486973 ( 61) AAAAAAAA 1 chr2L:16536584-16536704 ( 72) AAAAACAA 1 chr3L:2439170-2439290 ( 4) AAAAACAA 1 chrX:4386434-4386554 ( 85) AAAAACAA 1 chr3R:16232683-16232803 ( 58) AAAAACAA 1 chr2L:8142924-8143044 ( 78) AAAAACAA 1 chr2R:23815993-23816113 ( 34) AAAAACAA 1 chr3R:19254200-19254320 ( 42) AAAAACAA 1 chr3L:4307817-4307937 ( 84) AAAAACAA 1 chrX:16940564-16940684 ( 96) AACAAAAA 1 chr3L:15641470-15641590 ( 72) AAAAGAAA 1 chr3L:19021854-19021974 ( 77) AACAAAAA 1 chr2R:7308900-7309020 ( 84) AACAAAAA 1 chr2R:22156727-22156847 ( 63) AACAAAAA 1 chr3R:13816395-13816515 ( 88) AAAAGAAA 1 chr3R:7322692-7322812 ( 89) AAAAGAAA 1 chrX:14868523-14868643 ( 21) AACAAAAA 1 chrX:1570472-1570592 ( 110) AACAAAAA 1 chr3L:14515778-14515898 ( 94) AAAAGAAA 1 chr3L:10787804-10787924 ( 71) AAAAGCAA 1 chr2R:14027223-14027343 ( 110) AACAACAA 1 chr3R:9964703-9964823 ( 3) AACAACAA 1 chr3L:16710072-16710192 ( 21) AACAACAA 1 chr2L:14499634-14499754 ( 55) AAAAGCAA 1 chr3L:15246532-15246652 ( 14) AAAAGCAA 1 chr3L:5867338-5867458 ( 2) AACAACAA 1 chr3L:6442764-6442884 ( 93) AACAACAA 1 chr3L:15105718-15105838 ( 78) AAAAGCAA 1 chr2R:16839907-16840027 ( 50) AAAACAAA 1 chr2R:12460724-12460844 ( 82) AAAACAAA 1 chr3R:6401330-6401450 ( 24) AAAACCAA 1 chr2R:11082301-11082421 ( 2) AAAACCAA 1 chrX:16647912-16648032 ( 48) AAAACCAA 1 chr3L:13255156-13255276 ( 98) AAAACCAA 1 chr2R:18313221-18313341 ( 12) AAAACCAA 1 chr2R:7145244-7145364 ( 7) AAACACAA 1 chr3R:16206238-16206358 ( 87) AACAGCAA 1 chr3L:8882700-8882820 ( 54) AACAGCAA 1 chr3R:30192474-30192594 ( 9) AAATAAAA 1 chr2R:9028890-9029010 ( 36) AAATAAAA 1 chr2R:7086215-7086335 ( 17) AAATAAAA 1 chr3R:31248283-31248403 ( 83) AACACAAA 1 chr2R:7909600-7909720 ( 84) AAACGAAA 1 chr3L:8775136-8775256 ( 16) AACCAAAA 1 chr3L:18162330-18162450 ( 25) AAACGAAA 1 chr3L:5835602-5835722 ( 48) AACCAAAA 1 chr3R:21089557-21089677 ( 30) AAATACAA 1 chr3L:5571220-5571340 ( 14) AACCACAA 1 chr2L:4588936-4589056 ( 99) AAATGAAA 1 chr3R:6252967-6253087 ( 96) AAATGAAA 1 chr3R:19112526-19112646 ( 46) AACCGAAA 1 chr2L:7608195-7608315 ( 86) AACCGAAA 1 chr3L:3099175-3099295 ( 88) AACCGAAA 1 chr3R:7978514-7978634 ( 101) CAAAAAAA 1 chr3R:19151226-19151346 ( 32) AAACCCAA 1 chr3L:1828101-1828221 ( 37) AACCGCAA 1 chr2R:6547415-6547535 ( 58) AATAAAAA 1 chr3R:20835868-20835988 ( 87) CAAAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.97718 E= 2.1e-023 194 -320 -1289 -1289 198 -1289 -1289 -1289 149 19 -1289 -427 162 -74 -1289 -169 132 -103 0 -1289 129 66 -1289 -1289 198 -1289 -1289 -1289 198 -1289 -1289 -1289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 2.1e-023 0.973684 0.026316 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.710526 0.276316 0.000000 0.013158 0.776316 0.144737 0.000000 0.078947 0.631579 0.118421 0.250000 0.000000 0.618421 0.381579 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAMAA MEME-3 regular expression -------------------------------------------------------------------------------- AA[AC]A[AG][AC]AA -------------------------------------------------------------------------------- Time 20.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TKYTGYTK MEME-4 width = 8 sites = 72 llr = 529 E-value = 8.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKYTGYTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::4::6:2 probability G :5:3a::5 matrix T a567:4a3 bits 2.0 * * * 1.8 * * * 1.6 * * * 1.4 * * * Relative 1.2 * * * Entropy 1.0 ******* (10.6 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTGCTG consensus TCG T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGYTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14177704-14177824 113 1.60e-05 TGGTGGATGT TGTTGCTG chrX:2453335-2453455 66 1.60e-05 ttgctgttgc tgttgctg CTCGCTGGTT chr2L:21015622-21015742 84 1.60e-05 TATGTTGCTT TGTTGCTG TTGTTGCCTG chr3L:1828101-1828221 84 1.60e-05 CCGGGAATCG TGTTGCTG CACTTCCCAA chr2R:7145244-7145364 55 1.60e-05 ACATAATTCG TGTTGCTG CCTCATCATT chr2R:19867336-19867456 90 3.23e-05 gtgcagccgc ttttgctg cCAATTGTAA chr3L:5571220-5571340 60 3.23e-05 GCTGATGGCT TTTTGCTG GATGCTTGGG chr2R:16310492-16310612 12 3.23e-05 TGGGCTCAGC TTTTGCTG AGCTGGTGTT chr3R:19254200-19254320 100 3.23e-05 ACCGCAAATG TTTTGCTG TAATTTCTGG chr2R:12635746-12635866 18 4.91e-05 TAGTGTTTGC TGTTGTTG TATCGCTCGT chr2L:14499634-14499754 92 4.91e-05 GCTGCCACCG TGTTGTTG CTCACATTAC chr2L:635131-635251 58 4.91e-05 ACCGACTGGC TGTTGTTG TTATCGCTGA chr2R:15483742-15483862 13 4.91e-05 CCTTAGTCTG TGTTGTTG TGGCCGTGTG chrX:2031230-2031350 79 4.91e-05 CGCGACCCAC TGTTGTTG CAACTGCGGC chr2L:12423918-12424038 65 8.06e-05 TTGGGAGCCG TGTTGCTT TATGGTTTTC chr3L:19696195-19696315 54 8.06e-05 TTTTTTTTGT TGTTGCTT GTGCACTCCC chr2R:20574477-20574597 60 8.06e-05 TTGCAGTTGA TGCTGCTG TTGATCTTTC chr3L:11320230-11320350 89 8.06e-05 TTAACTTTCG TGTTGCTT TCAGCGAGCT chr3R:16206238-16206358 63 8.06e-05 CTCGAGCCGA TGCTGCTG CAATTGCTGC chrX:10547745-10547865 2 9.78e-05 C TTTTGTTG CCTTTGTTGG chr3L:2873242-2873362 107 9.78e-05 TGGTTTCTTT TTTTGTTG CCGAGC chr3R:14743537-14743657 62 9.78e-05 AGCGCTCTCC TTTTGTTG CCGCCCGCTT chr3L:17939795-17939915 76 9.78e-05 GTTGCCTTGT TTTTGTTG CATTTCTTTT chrX:2361143-2361263 99 9.78e-05 TTGTGTGTGT TTTTGTTG CCTCTTTTTC chr3R:13992280-13992400 107 1.30e-04 GCTGCTGCTT TTTTGCTT TTTGCT chr3R:31505743-31505863 98 1.30e-04 GATGAGAACA TTCTGCTG GTGCAATCGA chr2R:10694101-10694221 110 1.30e-04 atgctgctgc ttctgctg GAA chr3R:13974872-13974992 20 1.30e-04 tttttttttt ttttgctt tggtGGGGGG chr3L:13256298-13256418 81 1.30e-04 AGCCGACTCT TTCTGCTG CCAATCATTG chr3L:22147403-22147523 40 1.79e-04 GAGCAAAAGT TGTTGTTT GCCAGCTTGC chr2R:6548690-6548810 60 1.79e-04 GTCTTCGAAC TGCTGTTG TTTCAGTTGT chr3R:15437653-15437773 66 1.79e-04 gtgaagtggc tgtggctg tgggtctggg chr3L:14202454-14202574 79 1.79e-04 GGGGTTGTCA TGCTGTTG GAATTTATTT chr2L:847838-847958 92 1.94e-04 TGGCGGCGAC TGCTGCTT GATTGAGGTG chr3L:10787804-10787924 56 2.60e-04 GTGCCGCTTT TTTTGTTT TTTACACAAA chrX:20244470-20244590 69 2.60e-04 TTTGCCtttt ttttgttt ttttgttttt chr3L:10777982-10778102 38 2.60e-04 AATTCGCATC TTCTGTTG GCACGTTTTT chr3L:15101743-15101863 3 2.60e-04 GC TGTTGCTC TTTGCCTGTG chr3R:21896234-21896354 40 2.60e-04 TGGCTTTTGT TTCTGTTG TGTTTTTTTT chr3L:10712966-10713086 54 2.60e-04 ATATCTTTGC TTTTGTTT TGTATCTTTT chrX:10721335-10721455 26 2.60e-04 GGCATATTGG ttttgttt ttcttttttt chr2R:23815993-23816113 1 2.60e-04 . TTTGGCTG CGCGATAAGA chr2R:23055101-23055221 68 2.92e-04 CTTGACGCTC TGTGGTTG TTGACATGTT chrX:16647912-16648032 100 2.92e-04 tgagtgtgtg tgtggttg tgtgtgtgtg chr3L:21052373-21052493 69 3.55e-04 TTGCAGCAGT TGCTGTTT CTGATTCCAT chr3R:14433672-14433792 91 3.55e-04 AATGTTGAGC TGCTGTTT TGCCGGCAGA chr3R:7322692-7322812 50 3.55e-04 CAAGCCACGC TGTGGCTT CGGGAATTTA chr3R:17702103-17702223 100 3.55e-04 GTGGGACCTT TGTGGCTT ATCACCTTAA chr3L:15107499-15107619 47 3.55e-04 CAGAAATTGC TTTTGCTC GCTGGAATAT chr3L:4307817-4307937 31 3.55e-04 AGACTCGCTC TTTTGCTC GGCAGCAGCT chr2R:21382947-21383067 24 4.51e-04 GTTGATGATG TGCTGCTC TGGTGTCTGG chr2R:14027223-14027343 57 4.51e-04 GTTTGTTTGA TTTGGCTT GCTCACCTTC chr3L:16165468-16165588 29 4.51e-04 TTTGCGGTTT TTCTGTTT GCCGACTTGA chr3R:31504992-31505112 5 4.51e-04 AAGG TGCTGCTC TCACAGTTCG chr3R:19328850-19328970 45 4.51e-04 ACAGATGTCC TGCTGCTC CAAATTGAAA chr3L:6442764-6442884 37 4.51e-04 CACCGATTTC TTCGGCTG AAGTGGCGTG chr3R:26797881-26798001 110 5.00e-04 GTTGTGGAAG TGTGGTTT TAA chr3L:6440240-6440360 63 5.00e-04 tCAGTTGCCT TGCGGTTG TACCGCCCCC chr2L:16536584-16536704 17 5.94e-04 gttGCTGGAC TTCGGTTG TGGAATTGTG chr2R:23034149-23034269 34 5.94e-04 GTGCAACAGG TTTGGTTT GGATTCCTCC chr2R:14337673-14337793 113 5.94e-04 Attttctggt tttggttt chr3R:8969489-8969609 96 5.94e-04 CAACTTTTTA TGTGGCTC CCAAGGAGGA chr3R:30095456-30095576 15 5.94e-04 TGATGTTCGG TTTGGTTT CTCGTTTACC chr2R:22572700-22572820 85 5.94e-04 TTAATGAAAA TGCTGTTC GGCGAGCAGC chr3R:14363276-14363396 65 6.09e-04 ATCAGGTTCG TTCGGCTT TCAGGGCAGG chrX:17252121-17252241 7 6.09e-04 GCTGCT TTCGGCTT ATACATTTCT chrX:5772551-5772671 2 6.73e-04 T TGTGGTTC GAGCTTACTG chr3L:12111212-12111332 108 7.03e-04 cttcttcttc tgcggctc cttct chr3L:8871163-8871283 76 7.03e-04 CTGCTACATC TGCGGCTC CTTTTTCGTG chrX:14868523-14868643 101 7.03e-04 AGTTTACTTT TGCGGCTC CGGGACCAGG chr3R:24969064-24969184 8 7.03e-04 AAGAAAA TGCGGCTC GTGCTCGTAT chrX:3833231-3833351 46 7.34e-04 TTTGCCCAGC TTCGGCTC CTTTTCCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGYTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14177704-14177824 1.6e-05 112_[+4] chrX:2453335-2453455 1.6e-05 65_[+4]_47 chr2L:21015622-21015742 1.6e-05 83_[+4]_29 chr3L:1828101-1828221 1.6e-05 83_[+4]_29 chr2R:7145244-7145364 1.6e-05 54_[+4]_58 chr2R:19867336-19867456 3.2e-05 89_[+4]_23 chr3L:5571220-5571340 3.2e-05 59_[+4]_53 chr2R:16310492-16310612 3.2e-05 11_[+4]_101 chr3R:19254200-19254320 3.2e-05 99_[+4]_13 chr2R:12635746-12635866 4.9e-05 17_[+4]_95 chr2L:14499634-14499754 4.9e-05 91_[+4]_21 chr2L:635131-635251 4.9e-05 57_[+4]_55 chr2R:15483742-15483862 4.9e-05 12_[+4]_100 chrX:2031230-2031350 4.9e-05 78_[+4]_34 chr2L:12423918-12424038 8.1e-05 64_[+4]_48 chr3L:19696195-19696315 8.1e-05 53_[+4]_59 chr2R:20574477-20574597 8.1e-05 59_[+4]_53 chr3L:11320230-11320350 8.1e-05 88_[+4]_24 chr3R:16206238-16206358 8.1e-05 62_[+4]_50 chrX:10547745-10547865 9.8e-05 1_[+4]_111 chr3L:2873242-2873362 9.8e-05 106_[+4]_6 chr3R:14743537-14743657 9.8e-05 61_[+4]_51 chr3L:17939795-17939915 9.8e-05 75_[+4]_37 chrX:2361143-2361263 9.8e-05 98_[+4]_14 chr3R:13992280-13992400 0.00013 106_[+4]_6 chr3R:31505743-31505863 0.00013 97_[+4]_15 chr2R:10694101-10694221 0.00013 109_[+4]_3 chr3R:13974872-13974992 0.00013 19_[+4]_93 chr3L:13256298-13256418 0.00013 80_[+4]_32 chr3L:22147403-22147523 0.00018 39_[+4]_73 chr2R:6548690-6548810 0.00018 59_[+4]_53 chr3R:15437653-15437773 0.00018 65_[+4]_47 chr3L:14202454-14202574 0.00018 78_[+4]_34 chr2L:847838-847958 0.00019 91_[+4]_21 chr3L:10787804-10787924 0.00026 55_[+4]_57 chrX:20244470-20244590 0.00026 68_[+4]_44 chr3L:10777982-10778102 0.00026 37_[+4]_75 chr3L:15101743-15101863 0.00026 2_[+4]_110 chr3R:21896234-21896354 0.00026 39_[+4]_73 chr3L:10712966-10713086 0.00026 53_[+4]_59 chrX:10721335-10721455 0.00026 25_[+4]_87 chr2R:23815993-23816113 0.00026 [+4]_112 chr2R:23055101-23055221 0.00029 67_[+4]_45 chrX:16647912-16648032 0.00029 99_[+4]_13 chr3L:21052373-21052493 0.00035 68_[+4]_44 chr3R:14433672-14433792 0.00035 90_[+4]_22 chr3R:7322692-7322812 0.00035 49_[+4]_63 chr3R:17702103-17702223 0.00035 99_[+4]_13 chr3L:15107499-15107619 0.00035 46_[+4]_66 chr3L:4307817-4307937 0.00035 30_[+4]_82 chr2R:21382947-21383067 0.00045 23_[+4]_89 chr2R:14027223-14027343 0.00045 56_[+4]_56 chr3L:16165468-16165588 0.00045 28_[+4]_84 chr3R:31504992-31505112 0.00045 4_[+4]_108 chr3R:19328850-19328970 0.00045 44_[+4]_68 chr3L:6442764-6442884 0.00045 36_[+4]_76 chr3R:26797881-26798001 0.0005 109_[+4]_3 chr3L:6440240-6440360 0.0005 62_[+4]_50 chr2L:16536584-16536704 0.00059 16_[+4]_96 chr2R:23034149-23034269 0.00059 33_[+4]_79 chr2R:14337673-14337793 0.00059 112_[+4] chr3R:8969489-8969609 0.00059 95_[+4]_17 chr3R:30095456-30095576 0.00059 14_[+4]_98 chr2R:22572700-22572820 0.00059 84_[+4]_28 chr3R:14363276-14363396 0.00061 64_[+4]_48 chrX:17252121-17252241 0.00061 6_[+4]_106 chrX:5772551-5772671 0.00067 1_[+4]_111 chr3L:12111212-12111332 0.0007 107_[+4]_5 chr3L:8871163-8871283 0.0007 75_[+4]_37 chrX:14868523-14868643 0.0007 100_[+4]_12 chr3R:24969064-24969184 0.0007 7_[+4]_105 chrX:3833231-3833351 0.00073 45_[+4]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGYTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKYTGYTK width=8 seqs=72 chr2L:14177704-14177824 ( 113) TGTTGCTG 1 chrX:2453335-2453455 ( 66) TGTTGCTG 1 chr2L:21015622-21015742 ( 84) TGTTGCTG 1 chr3L:1828101-1828221 ( 84) TGTTGCTG 1 chr2R:7145244-7145364 ( 55) TGTTGCTG 1 chr2R:19867336-19867456 ( 90) TTTTGCTG 1 chr3L:5571220-5571340 ( 60) TTTTGCTG 1 chr2R:16310492-16310612 ( 12) TTTTGCTG 1 chr3R:19254200-19254320 ( 100) TTTTGCTG 1 chr2R:12635746-12635866 ( 18) TGTTGTTG 1 chr2L:14499634-14499754 ( 92) TGTTGTTG 1 chr2L:635131-635251 ( 58) TGTTGTTG 1 chr2R:15483742-15483862 ( 13) TGTTGTTG 1 chrX:2031230-2031350 ( 79) TGTTGTTG 1 chr2L:12423918-12424038 ( 65) TGTTGCTT 1 chr3L:19696195-19696315 ( 54) TGTTGCTT 1 chr2R:20574477-20574597 ( 60) TGCTGCTG 1 chr3L:11320230-11320350 ( 89) TGTTGCTT 1 chr3R:16206238-16206358 ( 63) TGCTGCTG 1 chrX:10547745-10547865 ( 2) TTTTGTTG 1 chr3L:2873242-2873362 ( 107) TTTTGTTG 1 chr3R:14743537-14743657 ( 62) TTTTGTTG 1 chr3L:17939795-17939915 ( 76) TTTTGTTG 1 chrX:2361143-2361263 ( 99) TTTTGTTG 1 chr3R:13992280-13992400 ( 107) TTTTGCTT 1 chr3R:31505743-31505863 ( 98) TTCTGCTG 1 chr2R:10694101-10694221 ( 110) TTCTGCTG 1 chr3R:13974872-13974992 ( 20) TTTTGCTT 1 chr3L:13256298-13256418 ( 81) TTCTGCTG 1 chr3L:22147403-22147523 ( 40) TGTTGTTT 1 chr2R:6548690-6548810 ( 60) TGCTGTTG 1 chr3R:15437653-15437773 ( 66) TGTGGCTG 1 chr3L:14202454-14202574 ( 79) TGCTGTTG 1 chr2L:847838-847958 ( 92) TGCTGCTT 1 chr3L:10787804-10787924 ( 56) TTTTGTTT 1 chrX:20244470-20244590 ( 69) TTTTGTTT 1 chr3L:10777982-10778102 ( 38) TTCTGTTG 1 chr3L:15101743-15101863 ( 3) TGTTGCTC 1 chr3R:21896234-21896354 ( 40) TTCTGTTG 1 chr3L:10712966-10713086 ( 54) TTTTGTTT 1 chrX:10721335-10721455 ( 26) TTTTGTTT 1 chr2R:23815993-23816113 ( 1) TTTGGCTG 1 chr2R:23055101-23055221 ( 68) TGTGGTTG 1 chrX:16647912-16648032 ( 100) TGTGGTTG 1 chr3L:21052373-21052493 ( 69) TGCTGTTT 1 chr3R:14433672-14433792 ( 91) TGCTGTTT 1 chr3R:7322692-7322812 ( 50) TGTGGCTT 1 chr3R:17702103-17702223 ( 100) TGTGGCTT 1 chr3L:15107499-15107619 ( 47) TTTTGCTC 1 chr3L:4307817-4307937 ( 31) TTTTGCTC 1 chr2R:21382947-21383067 ( 24) TGCTGCTC 1 chr2R:14027223-14027343 ( 57) TTTGGCTT 1 chr3L:16165468-16165588 ( 29) TTCTGTTT 1 chr3R:31504992-31505112 ( 5) TGCTGCTC 1 chr3R:19328850-19328970 ( 45) TGCTGCTC 1 chr3L:6442764-6442884 ( 37) TTCGGCTG 1 chr3R:26797881-26798001 ( 110) TGTGGTTT 1 chr3L:6440240-6440360 ( 63) TGCGGTTG 1 chr2L:16536584-16536704 ( 17) TTCGGTTG 1 chr2R:23034149-23034269 ( 34) TTTGGTTT 1 chr2R:14337673-14337793 ( 113) TTTGGTTT 1 chr3R:8969489-8969609 ( 96) TGTGGCTC 1 chr3R:30095456-30095576 ( 15) TTTGGTTT 1 chr2R:22572700-22572820 ( 85) TGCTGTTC 1 chr3R:14363276-14363396 ( 65) TTCGGCTT 1 chrX:17252121-17252241 ( 7) TTCGGCTT 1 chrX:5772551-5772671 ( 2) TGTGGTTC 1 chr3L:12111212-12111332 ( 108) TGCGGCTC 1 chr3L:8871163-8871283 ( 76) TGCGGCTC 1 chrX:14868523-14868643 ( 101) TGCGGCTC 1 chr3R:24969064-24969184 ( 8) TGCGGCTC 1 chrX:3833231-3833351 ( 46) TTCGGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGYTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 8.2e+002 -1281 -1281 -1281 197 -1281 -1281 111 85 -1281 63 -1281 129 -1281 -1281 35 142 -1281 -1281 200 -1281 -1281 120 -1281 80 -1281 -1281 -1281 197 -1281 -31 96 33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGYTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 8.2e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.541667 0.458333 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 0.319444 0.680556 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.000000 0.444444 0.000000 0.000000 0.000000 1.000000 0.000000 0.194444 0.486111 0.319444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKYTGYTK MEME-4 regular expression -------------------------------------------------------------------------------- T[GT][TC][TG]G[CT]T[GT] -------------------------------------------------------------------------------- Time 26.94 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACGCTC MEME-5 width = 8 sites = 8 llr = 89 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACGCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:a::::: pos.-specific C :a:a:a:a probability G ::::a::: matrix T ::::::a: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACGCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACGCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14363276-14363396 27 1.40e-05 GGCAGGCGGC ACACGCTC CAAAGCAATT chr3L:13119061-13119181 65 1.40e-05 TCGCCTCAAC ACACGCTC AGCCGCAGAT chr2R:11832062-11832182 24 1.40e-05 AACGGCGCTC ACACGCTC GCTTGGTTAT chr3R:14716311-14716431 95 1.40e-05 TTTCCCACCA ACACGCTC CCGTTCTGCC chr3L:4719817-4719937 9 1.40e-05 CGAAAGTA ACACGCTC ACACCGATAC chr3R:14474921-14475041 22 1.40e-05 CAAATTTTGC ACACGCTC AGCTCGAAAT chrX:18675408-18675528 108 1.40e-05 TCACACCGAC ACACGCTC GCCGT chr3R:14651345-14651465 82 1.40e-05 CAACTTGGAA ACACGCTC GAATGATaag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACGCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14363276-14363396 1.4e-05 26_[+5]_86 chr3L:13119061-13119181 1.4e-05 64_[+5]_48 chr2R:11832062-11832182 1.4e-05 23_[+5]_89 chr3R:14716311-14716431 1.4e-05 94_[+5]_18 chr3L:4719817-4719937 1.4e-05 8_[+5]_104 chr3R:14474921-14475041 1.4e-05 21_[+5]_91 chrX:18675408-18675528 1.4e-05 107_[+5]_5 chr3R:14651345-14651465 1.4e-05 81_[+5]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACGCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACGCTC width=8 seqs=8 chr3R:14363276-14363396 ( 27) ACACGCTC 1 chr3L:13119061-13119181 ( 65) ACACGCTC 1 chr2R:11832062-11832182 ( 24) ACACGCTC 1 chr3R:14716311-14716431 ( 95) ACACGCTC 1 chr3L:4719817-4719937 ( 9) ACACGCTC 1 chr3R:14474921-14475041 ( 22) ACACGCTC 1 chrX:18675408-18675528 ( 108) ACACGCTC 1 chr3R:14651345-14651465 ( 82) ACACGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACGCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 5.3e+003 198 -965 -965 -965 -965 205 -965 -965 198 -965 -965 -965 -965 205 -965 -965 -965 -965 200 -965 -965 205 -965 -965 -965 -965 -965 197 -965 205 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACGCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.3e+003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACGCTC MEME-5 regular expression -------------------------------------------------------------------------------- ACACGCTC -------------------------------------------------------------------------------- Time 32.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:13256298-13256418 2.83e-03 18_[+1(5.26e-05)]_94 chr3L:6066125-6066245 3.40e-02 120 chr3R:6252967-6253087 3.30e-01 120 chr3R:13786033-13786153 4.24e-01 120 chr3L:4307817-4307937 1.38e-05 39_[+2(1.42e-05)]_36_[+3(3.28e-05)]_\ 29 chrX:3833231-3833351 1.96e-01 120 chr2R:7588194-7588314 3.78e-01 120 chr3R:19036634-19036754 2.88e-02 109_[+1(1.79e-05)]_3 chr3R:11991628-11991748 6.73e-01 120 chr3R:19254200-19254320 5.25e-04 41_[+3(3.28e-05)]_50_[+4(3.23e-05)]_\ 13 chr3L:5835602-5835722 2.02e-02 120 chr3L:18162330-18162450 1.97e-02 3_[+1(3.48e-05)]_109 chr3R:14651345-14651465 4.09e-03 81_[+5(1.40e-05)]_31 chr2R:16217178-16217298 8.04e-01 120 chr3R:19151226-19151346 4.10e-01 120 chr3L:15105718-15105838 9.16e-03 77_[+3(9.67e-05)]_23_[+2(1.42e-05)]_\ 4 chr3L:6442764-6442884 5.11e-02 83_[+3(9.67e-05)]_1_[+3(9.67e-05)]_\ 20 chrX:2361143-2361263 1.71e-02 81_[+1(3.48e-05)]_9_[+4(9.78e-05)]_\ 5_[+1(6.95e-05)]_1 chr2R:7308701-7308821 1.85e-01 49_[+2(4.27e-05)]_63 chr2R:23815993-23816113 1.68e-04 27_[+3(3.28e-05)]_85 chr3R:15427306-15427426 7.54e-02 120 chr3L:17939795-17939915 1.99e-02 54_[+1(5.26e-05)]_13_[+4(9.78e-05)]_\ 37 chr2R:22572700-22572820 2.16e-02 2_[+1(1.79e-05)]_110 chr2L:8274256-8274376 1.43e-01 120 chr3L:8775136-8775256 1.81e-02 112_[+1(5.26e-05)] chr3R:19623423-19623543 2.56e-04 35_[+4(3.23e-05)]_77 chr2R:18945630-18945750 1.75e-01 120 chr3L:3099175-3099295 5.63e-02 53_[+1(8.64e-05)]_59 chr3L:6440240-6440360 6.23e-01 120 chr2R:8122465-8122585 6.65e-01 120 chrX:2031230-2031350 7.00e-03 78_[+4(4.91e-05)]_34 chr2R:7145244-7145364 4.98e-05 32_[+2(1.42e-05)]_14_[+4(1.60e-05)]_\ 58 chr2L:8142924-8143044 1.07e-01 77_[+3(3.28e-05)]_35 chr2R:19822596-19822716 7.23e-01 120 chr3L:4304411-4304531 7.20e-01 120 chr3L:14515778-14515898 7.47e-04 77_[+1(3.48e-05)]_8_[+3(6.55e-05)]_\ 19 chr3R:7978514-7978634 1.94e-01 120 chr3L:15763316-15763436 7.98e-01 120 chr3L:15107499-15107619 6.53e-02 120 chr3R:15433509-15433629 2.81e-01 6_[+2(8.47e-05)]_106 chr3R:21704591-21704711 5.53e-02 9_[+1(1.79e-05)]_11_[+1(3.48e-05)]_\ 9_[+1(1.79e-05)]_20_[+1(5.26e-05)]_39 chr3L:15103010-15103130 4.70e-01 120 chr2L:4588936-4589056 1.16e-02 22_[+1(1.79e-05)]_90 chr2L:20486853-20486973 4.87e-03 47_[+3(1.68e-05)]_5_[+3(1.68e-05)]_\ 1_[+3(1.68e-05)]_43 chrX:1570472-1570592 3.34e-01 109_[+3(6.55e-05)]_3 chr3L:14202454-14202574 3.65e-02 89_[+1(5.26e-05)]_23 chrX:18675408-18675528 3.12e-04 64_[+2(2.85e-05)]_35_[+5(1.40e-05)]_\ 5 chr2R:13462994-13463114 2.35e-02 73_[+2(4.27e-05)]_39 chr3L:12095559-12095679 1.46e-02 73_[+3(1.68e-05)]_39 chr2R:7086215-7086335 2.47e-01 120 chr3L:17985356-17985476 4.90e-02 46_[+1(6.95e-05)]_4_[+1(3.48e-05)]_\ 54 chr3R:14474921-14475041 4.53e-03 21_[+5(1.40e-05)]_91 chr3R:9897584-9897704 1.85e-02 21_[+1(1.79e-05)]_91 chr3R:26797881-26798001 7.16e-02 120 chr3R:13974872-13974992 1.84e-02 8_[+1(1.79e-05)]_104 chrX:10721335-10721455 7.54e-03 6_[+1(3.48e-05)]_22_[+1(1.79e-05)]_\ 6_[+1(1.79e-05)]_62 chr2L:7608195-7608315 2.59e-01 120 chr3L:4719817-4719937 9.59e-02 8_[+5(1.40e-05)]_104 chr3R:20835868-20835988 6.16e-01 120 chr3R:15437653-15437773 6.05e-02 120 chr3L:5867338-5867458 3.12e-01 1_[+3(9.67e-05)]_111 chr3L:22465950-22466070 6.05e-01 120 chr3L:15265135-15265255 9.99e-01 120 chr3R:27218969-27219089 7.25e-02 120 chr3R:24969064-24969184 2.31e-01 120 chr3L:8882700-8882820 1.47e-02 120 chr3R:16206238-16206358 4.15e-04 63_[+2(5.71e-05)]_4_[+2(4.27e-05)]_\ 25_[+2(1.42e-05)]_4 chr2R:9028890-9029010 1.63e-01 120 chr3L:1822492-1822612 4.05e-01 120 chr2R:15483742-15483862 7.21e-03 12_[+4(4.91e-05)]_30_[+1(1.79e-05)]_\ 62 chr2L:14183058-14183178 4.84e-02 13_[+3(1.68e-05)]_99 chr2R:7261851-7261971 3.42e-01 120 chr2R:23715532-23715652 5.49e-01 120 chr2R:18313221-18313341 9.94e-03 65_[+2(1.42e-05)]_1_[+2(8.47e-05)]_\ 38 chr2L:847838-847958 1.08e-03 40_[+3(1.68e-05)]_25_[+2(9.95e-05)]_\ 39 chrX:13138958-13139078 5.69e-02 120 chr2R:14986450-14986570 1.19e-01 120 chr3L:2874174-2874294 1.32e-02 61_[+3(6.55e-05)]_37_[+3(1.68e-05)]_\ 6 chr3L:13255156-13255276 1.45e-01 120 chr2R:7909600-7909720 1.38e-01 120 chr3L:10712966-10713086 4.95e-04 10_[+1(1.79e-05)]_1_[+4(9.78e-05)]_\ 93 chr3L:12108916-12109036 7.33e-01 120 chr2R:9006564-9006684 8.68e-02 120 chr2R:6548465-6548585 9.09e-01 120 chrX:17252121-17252241 3.61e-01 120 chr2R:14873901-14874021 6.53e-01 120 chrX:3099247-3099367 6.45e-02 66_[+1(5.26e-05)]_46 chr3L:20984553-20984673 2.15e-01 120 chrX:17732261-17732381 1.66e-01 67_[+3(1.68e-05)]_19_[+3(9.67e-05)]_\ 18 chr3L:1828101-1828221 1.05e-02 83_[+4(1.60e-05)]_29 chr3R:26906278-26906398 2.27e-02 15_[+1(5.26e-05)]_9_[+1(5.26e-05)]_\ 15_[+1(1.79e-05)]_57 chr3R:19328850-19328970 8.09e-02 120 chr2L:635131-635251 1.11e-02 57_[+4(4.91e-05)]_55 chr3L:6249266-6249386 2.90e-02 85_[+1(1.79e-05)]_27 chr3R:30095456-30095576 7.05e-02 120 chr3R:19064211-19064331 8.82e-03 35_[+3(9.67e-05)]_24_[+3(1.68e-05)]_\ 45 chr3R:17702103-17702223 7.03e-02 40_[+2(5.71e-05)]_72 chr3R:31504992-31505112 6.68e-02 120 chr3L:9768113-9768233 5.85e-01 120 chr2R:19578808-19578928 9.82e-03 26_[+2(2.85e-05)]_86 chrX:14868523-14868643 8.02e-05 20_[+3(6.55e-05)]_43_[+2(1.42e-05)]_\ 41 chr2R:24983320-24983440 2.19e-01 120 chr2R:6547415-6547535 1.54e-02 111_[+2(1.42e-05)]_1 chr3R:7322692-7322812 1.73e-02 88_[+3(6.55e-05)]_11_[+3(6.55e-05)]_\ 5 chr3R:16232683-16232803 1.01e-02 57_[+3(3.28e-05)]_31_[+3(9.67e-05)]_\ 2_[+2(8.47e-05)]_6 chr2R:16310492-16310612 1.66e-02 11_[+4(3.23e-05)]_101 chr3L:15246532-15246652 1.92e-02 13_[+3(9.67e-05)]_99 chr3L:5625274-5625394 6.48e-01 120 chr2L:7522611-7522731 1.21e-05 38_[+3(6.55e-05)]_1_[+3(1.68e-05)]_\ 11_[+2(5.71e-05)]_46 chr3R:13816395-13816515 2.43e-01 16_[+3(9.67e-05)]_63_[+3(6.55e-05)]_\ 25 chr3L:3074869-3074989 3.23e-02 120 chrX:10932333-10932453 7.91e-02 80_[+3(1.68e-05)]_32 chr3R:31248283-31248403 3.01e-01 120 chr3R:21896234-21896354 4.74e-03 49_[+1(1.79e-05)]_8_[+1(3.48e-05)]_\ 47 chr3L:4055602-4055722 1.37e-01 120 chr3L:5571220-5571340 1.49e-03 59_[+4(3.23e-05)]_53 chr2R:21301767-21301887 1.02e-01 54_[+3(1.68e-05)]_58 chr2L:21015622-21015742 2.64e-02 75_[+4(8.06e-05)]_[+4(1.60e-05)]_29 chrX:16647912-16648032 2.77e-03 120 chr2R:22399499-22399619 1.31e-01 120 chr2R:12460724-12460844 1.72e-02 120 chr3L:11320230-11320350 1.84e-02 88_[+4(8.06e-05)]_24 chr2R:10694101-10694221 1.43e-02 101_[+2(5.71e-05)]_11 chr2R:20574477-20574597 1.04e-04 59_[+4(8.06e-05)]_14_[+1(1.79e-05)]_\ 7_[+2(2.85e-05)]_16 chr3R:10828804-10828924 1.15e-01 120 chr3L:17631382-17631502 7.35e-01 120 chr3L:8652664-8652784 6.10e-01 120 chr2R:5691888-5692008 2.73e-01 120 chrX:1574416-1574536 8.28e-02 66_[+1(5.26e-05)]_46 chr2R:12533932-12534052 3.47e-02 99_[+1(3.48e-05)]_13 chr2R:21618968-21619088 9.54e-01 120 chr2R:13465184-13465304 3.20e-01 120 chr3R:7995919-7996039 7.14e-01 120 chrX:2649132-2649252 6.68e-02 120 chr3R:14743537-14743657 8.63e-02 61_[+4(9.78e-05)]_51 chr3R:5332160-5332280 5.97e-01 120 chr2L:8007319-8007439 8.20e-02 120 chrX:9030023-9030143 3.56e-01 120 chr3R:5097237-5097357 3.09e-01 120 chr3L:19696195-19696315 2.54e-03 27_[+1(5.26e-05)]_8_[+1(1.79e-05)]_\ 2_[+4(8.06e-05)]_59 chr3R:4472712-4472832 8.72e-01 120 chr2R:11082301-11082421 1.48e-01 120 chr3R:14716311-14716431 5.16e-02 94_[+5(1.40e-05)]_18 chr2L:7702919-7703039 3.48e-04 21_[+1(5.26e-05)]_3_[+2(5.71e-05)]_\ 80 chr3L:15101743-15101863 1.72e-03 91_[+4(1.60e-05)]_21 chr3R:19112526-19112646 1.72e-01 120 chr2L:7573652-7573772 9.80e-01 120 chr3R:8969489-8969609 2.39e-01 120 chr2R:10236256-10236376 6.30e-02 120 chr2L:11196913-11197033 5.74e-01 120 chr3L:15108265-15108385 1.28e-01 120 chr3R:31505743-31505863 6.02e-02 120 chr3L:21689297-21689417 7.14e-01 120 chrX:2453335-2453455 2.34e-02 59_[+4(1.60e-05)]_53 chr3L:21104729-21104849 2.23e-01 120 chr2R:22156727-22156847 8.47e-03 47_[+3(6.55e-05)]_7_[+3(6.55e-05)]_\ 36_[+2(1.42e-05)]_6 chr3L:1866501-1866621 3.19e-01 120 chr2L:12423918-12424038 1.59e-02 64_[+4(8.06e-05)]_48 chr3R:6244206-6244326 1.91e-01 120 chr2L:14499634-14499754 7.92e-05 20_[+3(9.67e-05)]_9_[+3(9.67e-05)]_\ 3_[+3(9.67e-05)]_9_[+3(9.67e-05)]_2_[+2(1.42e-05)]_8_[+4(4.91e-05)]_21 chr2R:23055101-23055221 6.98e-03 5_[+2(7.07e-05)]_107 chr2R:10775342-10775462 1.35e-02 13_[+2(8.47e-05)]_63_[+3(1.68e-05)]_\ 28 chr2R:9012087-9012207 2.02e-01 120 chr2R:24957410-24957530 9.18e-02 120 chr3L:10777982-10778102 8.70e-03 13_[+2(1.42e-05)]_99 chrX:13421181-13421301 8.59e-01 120 chr2R:25009602-25009722 9.93e-01 120 chr2R:11832062-11832182 4.81e-04 23_[+5(1.40e-05)]_89 chr2L:20794797-20794917 8.25e-01 120 chr2R:16839907-16840027 2.44e-02 120 chr2R:17469834-17469954 5.59e-02 9_[+3(1.68e-05)]_103 chr3R:20765497-20765617 2.25e-02 [+3(1.68e-05)]_15_[+3(1.68e-05)]_4_\ [+3(6.55e-05)]_77 chr2R:14433383-14433503 1.73e-04 10_[+2(2.85e-05)]_9_[+3(1.68e-05)]_\ 1_[+3(3.28e-05)]_76 chr2R:12635746-12635866 7.50e-03 17_[+4(4.91e-05)]_23_[+4(4.91e-05)]_\ 1_[+1(1.79e-05)]_55 chrX:1320270-1320390 4.71e-01 120 chr3L:20734025-20734145 1.91e-02 104_[+2(5.71e-05)]_8 chr3R:12413365-12413485 3.41e-01 120 chr2R:7195090-7195210 9.00e-01 120 chr2L:10794177-10794297 4.39e-02 15_[+3(3.28e-05)]_5_[+3(1.68e-05)]_\ 28_[+3(6.55e-05)]_48 chr2R:22080370-22080490 8.22e-03 120 chr2R:5683958-5684078 4.66e-02 120 chr3R:13992280-13992400 1.45e-04 26_[+1(3.48e-05)]_58_[+4(1.60e-05)]_\ 20 chr3L:14456057-14456177 1.33e-01 92_[+3(1.68e-05)]_20 chr3L:8871163-8871283 1.01e-02 32_[+2(1.42e-05)]_80 chr3L:21225023-21225143 9.48e-01 120 chr3L:12111212-12111332 1.21e-02 89_[+1(6.95e-05)]_23 chr2L:20908184-20908304 3.00e-02 77_[+1(1.79e-05)]_35 chrX:4386434-4386554 3.68e-03 4_[+1(1.79e-05)]_60_[+3(3.28e-05)]_\ 4_[+3(3.28e-05)]_28 chr2R:23432306-23432426 3.07e-01 120 chr3L:21056892-21057012 8.46e-01 120 chr3R:27597386-27597506 1.97e-01 59_[+2(7.07e-05)]_53 chr2R:6548690-6548810 1.45e-01 120 chr3R:14433672-14433792 5.56e-02 120 chr3R:25205766-25205886 1.65e-01 55_[+1(5.26e-05)]_57 chr2R:14337673-14337793 7.67e-02 120 chr3L:16710072-16710192 2.53e-02 17_[+3(9.67e-05)]_95 chr3L:13119061-13119181 3.04e-02 64_[+5(1.40e-05)]_48 chr2R:19867336-19867456 7.91e-04 59_[+2(5.71e-05)]_3_[+2(5.71e-05)]_\ 3_[+2(7.07e-05)]_[+4(3.23e-05)]_23 chrX:20244470-20244590 1.91e-02 64_[+1(1.79e-05)]_9_[+1(1.79e-05)]_\ 31 chr3L:6219671-6219791 6.55e-02 21_[+2(1.42e-05)]_91 chr2L:13886758-13886878 9.74e-02 120 chr2L:12013628-12013748 2.28e-01 120 chr2R:8985592-8985712 2.32e-01 120 chr3R:30192474-30192594 5.36e-01 120 chr2R:22933921-22934041 4.54e-02 33_[+2(1.42e-05)]_79 chr2R:7308900-7309020 2.08e-02 71_[+1(8.64e-05)]_4_[+3(6.55e-05)]_\ 29 chr2L:14177704-14177824 5.10e-05 24_[+3(1.68e-05)]_[+3(6.55e-05)]_30_\ [+4(3.23e-05)]_15_[+1(3.48e-05)]_11_[+4(1.60e-05)] chr3R:27186052-27186172 8.84e-01 120 chr3R:29818982-29819102 5.38e-02 120 chr2R:19149617-19149737 2.38e-03 20_[+3(1.68e-05)]_70_[+3(1.68e-05)]_\ 4_[+2(9.95e-05)]_2 chr3L:9549618-9549738 5.92e-03 120 chr3L:16165468-16165588 2.24e-02 120 chr3R:19294017-19294137 9.11e-01 120 chr3R:16357021-16357141 3.65e-02 [+2(5.71e-05)]_112 chr3R:25331041-25331161 6.26e-02 120 chr3R:6401330-6401450 2.27e-01 120 chr3R:21089557-21089677 3.65e-01 120 chr3L:2439170-2439290 1.31e-02 3_[+3(3.28e-05)]_109 chr3R:9964703-9964823 1.17e-01 2_[+3(9.67e-05)]_110 chrX:22515065-22515185 4.26e-01 120 chr2L:21313124-21313244 1.68e-01 120 chr2R:14027223-14027343 1.25e-06 25_[+1(1.79e-05)]_52_[+3(9.67e-05)]_\ 5_[+2(1.42e-05)]_3_[+3(9.67e-05)]_3 chr2L:16816818-16816938 6.53e-02 120 chr3R:14653309-14653429 1.23e-01 120 chr2R:21382947-21383067 2.26e-01 120 chr3R:4667180-4667300 7.94e-02 24_[+2(1.42e-05)]_88 chrX:18666012-18666132 5.89e-01 120 chr2R:7252162-7252282 6.99e-01 120 chr3L:19021854-19021974 6.48e-03 49_[+3(6.55e-05)]_19_[+3(6.55e-05)]_\ 28_[+2(7.07e-05)] chr3R:14363276-14363396 3.61e-03 26_[+5(1.40e-05)]_86 chr3L:22147403-22147523 1.86e-01 120 chr2R:18312118-18312238 4.81e-01 120 chr3L:22421050-22421170 2.73e-01 [+2(8.47e-05)]_112 chr2L:14598764-14598884 6.84e-01 120 chr2R:24685242-24685362 3.62e-01 120 chr3R:26464515-26464635 2.38e-01 120 chr2R:7289649-7289769 1.15e-01 49_[+1(5.26e-05)]_63 chr3R:4307866-4307986 7.17e-01 120 chr3L:2873242-2873362 2.78e-03 50_[+1(5.26e-05)]_10_[+1(5.26e-05)]_\ 24_[+1(3.48e-05)]_12 chr3R:9222509-9222629 4.26e-04 77_[+3(9.67e-05)]_8_[+3(1.68e-05)]_\ 19 chrX:10547745-10547865 3.79e-02 1_[+4(9.78e-05)]_41_[+1(6.95e-05)]_\ 62 chr3L:21052373-21052493 2.64e-02 120 chr3R:30827756-30827876 3.90e-01 120 chr2R:23034149-23034269 2.81e-01 120 chr3L:15641470-15641590 2.13e-01 71_[+3(6.55e-05)]_25_[+3(9.67e-05)]_\ 8 chr3R:16251985-16252105 3.14e-01 120 chr2L:16536584-16536704 4.31e-04 5_[+4(1.60e-05)]_58_[+3(3.28e-05)]_\ 41 chr3L:10787804-10787924 3.80e-04 16_[+1(1.79e-05)]_46_[+3(9.67e-05)]_\ 42 chrX:16940564-16940684 2.54e-03 95_[+3(6.55e-05)]_17 chrX:5772551-5772671 1.55e-02 110_[+1(6.95e-05)]_2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************