******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6808.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:10508131-10508251 1.0000 120 chr2L:4331860-4331980 1.0000 120 chrX:6709777-6709897 1.0000 120 chr2R:13183903-13184023 1.0000 120 chrX:13411026-13411146 1.0000 120 chr2L:4905498-4905618 1.0000 120 chr3R:8250324-8250444 1.0000 120 chr3R:14259954-14260074 1.0000 120 chrX:4647797-4647917 1.0000 120 chr2R:12521323-12521443 1.0000 120 chr3L:22466056-22466176 1.0000 120 chr2L:4332068-4332188 1.0000 120 chr3R:24234894-24235014 1.0000 120 chr2L:3417044-3417164 1.0000 120 chrX:1375383-1375503 1.0000 120 chr3L:12484603-12484723 1.0000 120 chrX:15709645-15709765 1.0000 120 chrX:22526913-22527033 1.0000 120 chr3L:14212380-14212500 1.0000 120 chr2R:24138204-24138324 1.0000 120 chr3R:22094056-22094176 1.0000 120 chr2L:12066739-12066859 1.0000 120 chr2L:7226737-7226857 1.0000 120 chrX:13090811-13090931 1.0000 120 chr3R:28345432-28345552 1.0000 120 chrX:1460654-1460774 1.0000 120 chr2R:10156245-10156365 1.0000 120 chr2L:8740910-8741030 1.0000 120 chr3R:30180108-30180228 1.0000 120 chr2R:15225078-15225198 1.0000 120 chr2R:15811950-15812070 1.0000 120 chr2L:7132700-7132820 1.0000 120 chrX:13091015-13091135 1.0000 120 chrX:15709846-15709966 1.0000 120 chr2R:7669015-7669135 1.0000 120 chr2L:7063945-7064065 1.0000 120 chrX:15080051-15080171 1.0000 120 chr3L:6972590-6972710 1.0000 120 chrX:17422137-17422257 1.0000 120 chrX:9600875-9600995 1.0000 120 chrX:7995357-7995477 1.0000 120 chr3R:9933502-9933622 1.0000 120 chr3L:12484802-12484922 1.0000 120 chrX:18565949-18566069 1.0000 120 chr3R:10177083-10177203 1.0000 120 chr3R:30177675-30177795 1.0000 120 chr3R:24004090-24004210 1.0000 120 chr2R:13963638-13963758 1.0000 120 chr3R:10049068-10049188 1.0000 120 chr2R:6148134-6148254 1.0000 120 chr2L:6024514-6024634 1.0000 120 chr3R:5111926-5112046 1.0000 120 chr3R:16135742-16135862 1.0000 120 chr2L:1500431-1500551 1.0000 120 chr2R:8595941-8596061 1.0000 120 chr2R:18879219-18879339 1.0000 120 chr3R:26543588-26543708 1.0000 120 chrX:7973430-7973550 1.0000 120 chr2R:7472415-7472535 1.0000 120 chr3R:10592963-10593083 1.0000 120 chr3R:13716220-13716340 1.0000 120 chrX:8176401-8176521 1.0000 120 chr2R:21531933-21532053 1.0000 120 chr3R:9389140-9389260 1.0000 120 chr2R:9498794-9498914 1.0000 120 chr3L:485046-485166 1.0000 120 chr3L:19556982-19557102 1.0000 120 chr3R:18146805-18146925 1.0000 120 chr3R:9381090-9381210 1.0000 120 chr3L:16854384-16854504 1.0000 120 chr3R:30014027-30014147 1.0000 120 chr3L:4336694-4336814 1.0000 120 chr2L:2724892-2725012 1.0000 120 chr2L:11014835-11014955 1.0000 120 chrX:7980913-7981033 1.0000 120 chr3L:1298537-1298657 1.0000 120 chr2L:2802662-2802782 1.0000 120 chrX:13879590-13879710 1.0000 120 chr3R:26725349-26725469 1.0000 120 chr3R:10829907-10830027 1.0000 120 chrX:9344299-9344419 1.0000 120 chr3L:10534021-10534141 1.0000 120 chrX:8159126-8159246 1.0000 120 chrX:13116639-13116759 1.0000 120 chr3L:11136501-11136621 1.0000 120 chr2R:8995119-8995239 1.0000 120 chr3L:2567162-2567282 1.0000 120 chr3L:18080115-18080235 1.0000 120 chr3R:26004540-26004660 1.0000 120 chr3L:8358261-8358381 1.0000 120 chr3L:12455186-12455306 1.0000 120 chr3L:16842161-16842281 1.0000 120 chr2R:22596940-22597060 1.0000 120 chr2R:9714256-9714376 1.0000 120 chr2L:16562496-16562616 1.0000 120 chr2R:15063753-15063873 1.0000 120 chr3R:11616245-11616365 1.0000 120 chrX:13644788-13644908 1.0000 120 chr2R:20580823-20580943 1.0000 120 chr2R:23862705-23862825 1.0000 120 chr3R:30357223-30357343 1.0000 120 chrX:17726091-17726211 1.0000 120 chr3R:17087994-17088114 1.0000 120 chr2L:168427-168547 1.0000 120 chr2R:7676417-7676537 1.0000 120 chrX:17806442-17806562 1.0000 120 chr3R:30289460-30289580 1.0000 120 chrX:14098373-14098493 1.0000 120 chr3L:14350949-14351069 1.0000 120 chr3L:18889403-18889523 1.0000 120 chrX:17488540-17488660 1.0000 120 chr2R:15046162-15046282 1.0000 120 chr3L:9462968-9463088 1.0000 120 chrX:5769009-5769129 1.0000 120 chr3R:25596781-25596901 1.0000 120 chr3R:27283903-27284023 1.0000 120 chr2R:15047016-15047136 1.0000 120 chr3L:41792-41912 1.0000 120 chr2L:2484291-2484411 1.0000 120 chr2R:22998626-22998746 1.0000 120 chr2R:11180835-11180955 1.0000 120 chr2R:7370394-7370514 1.0000 120 chr3R:26534886-26535006 1.0000 120 chr3R:20556837-20556957 1.0000 120 chrX:8592769-8592889 1.0000 120 chr2L:13884764-13884884 1.0000 120 chr2R:18746907-18747027 1.0000 120 chr3R:21938653-21938773 1.0000 120 chr2L:8741161-8741281 1.0000 120 chr3R:30005476-30005596 1.0000 120 chr3L:3106288-3106408 1.0000 120 chr2L:19144289-19144409 1.0000 120 chr3L:20592680-20592800 1.0000 120 chr2L:12543986-12544106 1.0000 120 chr3L:3338244-3338364 1.0000 120 chr2L:3352003-3352123 1.0000 120 chr3L:5943680-5943800 1.0000 120 chr3L:6447840-6447960 1.0000 120 chr2L:2806348-2806468 1.0000 120 chr2R:13214603-13214723 1.0000 120 chr3R:25493947-25494067 1.0000 120 chr2R:17439603-17439723 1.0000 120 chr2R:9071876-9071996 1.0000 120 chrX:3720289-3720409 1.0000 120 chr3R:17088201-17088321 1.0000 120 chr2R:10473895-10474015 1.0000 120 chr3L:3304128-3304248 1.0000 120 chr3R:9594364-9594484 1.0000 120 chrX:18544902-18545022 1.0000 120 chrX:5051198-5051318 1.0000 120 chr3R:29279727-29279847 1.0000 120 chr2R:21224990-21225110 1.0000 120 chr3R:30285142-30285262 1.0000 120 chr3R:11616461-11616581 1.0000 120 chr3R:27069322-27069442 1.0000 120 chr3R:24953276-24953396 1.0000 120 chr2L:3562550-3562670 1.0000 120 chr3R:24117052-24117172 1.0000 120 chr3L:16259707-16259827 1.0000 120 chr2L:4375216-4375336 1.0000 120 chrX:17305655-17305775 1.0000 120 chr2R:22399471-22399591 1.0000 120 chr3L:21892813-21892933 1.0000 120 chr2R:18760629-18760749 1.0000 120 chr2R:17266169-17266289 1.0000 120 chr2L:8420439-8420559 1.0000 120 chr3L:12615204-12615324 1.0000 120 chr3L:6155248-6155368 1.0000 120 chrX:6708194-6708314 1.0000 120 chr3R:8349989-8350109 1.0000 120 chr3L:20582503-20582623 1.0000 120 chr3L:9377909-9378029 1.0000 120 chrX:19359231-19359351 1.0000 120 chr2R:19157696-19157816 1.0000 120 chr2L:5493974-5494094 1.0000 120 chr2R:17136202-17136322 1.0000 120 chr2L:20916906-20917026 1.0000 120 chr2R:10474740-10474860 1.0000 120 chr3L:8360446-8360566 1.0000 120 chrX:6730724-6730844 1.0000 120 chr2R:11551126-11551246 1.0000 120 chrX:20166801-20166921 1.0000 120 chr2L:7207787-7207907 1.0000 120 chr2L:5479323-5479443 1.0000 120 chr3L:2873202-2873322 1.0000 120 chr3L:13387780-13387900 1.0000 120 chr3R:27179094-27179214 1.0000 120 chr3L:5551175-5551295 1.0000 120 chr2R:9956131-9956251 1.0000 120 chr3L:19793042-19793162 1.0000 120 chrX:9139255-9139375 1.0000 120 chr3R:11865289-11865409 1.0000 120 chr3L:539910-540030 1.0000 120 chr3L:19035597-19035717 1.0000 120 chrX:4435054-4435174 1.0000 120 chr2R:11544120-11544240 1.0000 120 chr2R:8655386-8655506 1.0000 120 chrX:7290973-7291093 1.0000 120 chr3R:28847956-28848076 1.0000 120 chr3L:16842361-16842481 1.0000 120 chr3L:16189768-16189888 1.0000 120 chr3L:15220479-15220599 1.0000 120 chr3R:6106942-6107062 1.0000 120 chr3L:11634644-11634764 1.0000 120 chr2R:18215419-18215539 1.0000 120 chrX:18483765-18483885 1.0000 120 chr2R:17831925-17832045 1.0000 120 chr3L:7134966-7135086 1.0000 120 chr2R:19617332-19617452 1.0000 120 chr3R:6102471-6102591 1.0000 120 chr2R:14986965-14987085 1.0000 120 chr2L:11069707-11069827 1.0000 120 chr3R:14716668-14716788 1.0000 120 chr2L:16536690-16536810 1.0000 120 chr2R:23637812-23637932 1.0000 120 chrX:16723733-16723853 1.0000 120 chr2R:21386722-21386842 1.0000 120 chr3R:12717069-12717189 1.0000 120 chr3L:13178318-13178438 1.0000 120 chrX:12890430-12890550 1.0000 120 chr2R:15906097-15906217 1.0000 120 chr3R:24970774-24970894 1.0000 120 chrX:8176602-8176722 1.0000 120 chr2L:5288414-5288534 1.0000 120 chr4:829984-830104 1.0000 120 chr3R:23763960-23764080 1.0000 120 chr2L:18484685-18484805 1.0000 120 chr2L:18457079-18457199 1.0000 120 chr3L:2817971-2818091 1.0000 120 chr2R:18567334-18567454 1.0000 120 chr3R:13916647-13916767 1.0000 120 chr3L:10365063-10365183 1.0000 120 chr3L:5637600-5637720 1.0000 120 chr3L:9551316-9551436 1.0000 120 chr3R:21826169-21826289 1.0000 120 chr3L:8013992-8014112 1.0000 120 chr2L:3158665-3158785 1.0000 120 chr3R:16210861-16210981 1.0000 120 chr2L:6036863-6036983 1.0000 120 chrX:17149759-17149879 1.0000 120 chrX:16633651-16633771 1.0000 120 chr3L:16173983-16174103 1.0000 120 chrX:12672761-12672881 1.0000 120 chr3R:6954626-6954746 1.0000 120 chr3R:29570398-29570518 1.0000 120 chr3R:21634857-21634977 1.0000 120 chr2R:11749594-11749714 1.0000 120 chr3R:23061255-23061375 1.0000 120 chr2L:5372717-5372837 1.0000 120 chr3R:5622162-5622282 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG6808/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6808.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.295 C 0.198 G 0.197 T 0.309 Background letter frequencies (from file dataset with add-one prior applied): A 0.295 C 0.198 G 0.197 T 0.309 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGCAGCAC MEME-1 width = 8 sites = 45 llr = 420 E-value = 8.7e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCAGCAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::9::9: pos.-specific C ::a::a:6 probability G 9a::7::3 matrix T ::::2::1 bits 2.3 ** * 2.1 ** * 1.9 ** * 1.6 *** * Relative 1.4 **** ** Entropy 1.2 ******* (13.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGCAC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17305655-17305775 66 5.16e-06 ATCATGCTTT GGCAGCAC TGCGTTTATA chr2R:13214603-13214723 55 5.16e-06 TGCGATACTG GGCAGCAC TGCCATGTAT chr3L:1298537-1298657 77 5.16e-06 CCAATAATCT GGCAGCAC TAGAAAAGTA chr2L:1500431-1500551 69 5.16e-06 AAGGATGATG GGCAGCAC TGGACTATTT chr2L:6024514-6024634 82 5.16e-06 AAAATACATT GGCAGCAC TGTCAAAGGG chr2R:7669015-7669135 68 5.16e-06 ACCAATGCTG GGCAGCAC TGGTGAATTG chr3R:30180108-30180228 51 5.16e-06 ACGTTTTATG GGCAGCAC TTGCCACCAC chr2L:7226737-7226857 33 5.16e-06 CCGTGGACTG GGCAGCAC TGCAAACGCA chr2R:24138204-24138324 63 5.16e-06 CATCCAACTT GGCAGCAC TGGCGAAGTT chr3L:14212380-14212500 68 5.16e-06 ATGTCACATG GGCAGCAC TGGTTGCGTT chrX:15709645-15709765 46 5.16e-06 TATTTCTATG GGCAGCAC AGTTCAATTA chr2R:12521323-12521443 58 5.16e-06 TCTTATGATG GGCAGCAC TGTTTCCGCT chrX:13411026-13411146 57 5.16e-06 TCGCCTAATT GGCAGCAC TTCTGGTTGC chr2R:13183903-13184023 43 5.16e-06 CGCGCGCATG GGCAGCAC TGATGCTCTC chr3L:10508131-10508251 70 5.16e-06 AGTTTCTATG GGCAGCAC TGTAACTGTT chr3L:7134966-7135086 51 1.03e-05 caacaatagc ggcagcag caacaaccac chrX:9139255-9139375 70 1.03e-05 TCCAAAGTCC GGCAGCAG CTGGGCGCTT chr3L:18889403-18889523 9 1.03e-05 ATGCTTGG GGCAGCAG AAACGGCAAG chr2R:15811950-15812070 60 1.03e-05 AAAGAGCAGT GGCAGCAG TGGTACCCAT chr2L:3158665-3158785 52 1.84e-05 ATTGGAGCTG GGCATCAC TGGCGGCAAC chr2R:11180835-11180955 68 1.84e-05 aaCGAAGCCC GGCATCAC GTCATACCGG chrX:9600875-9600995 64 1.84e-05 AAATCAAATT GGCATCAC TTGTTGGTAT chrX:13090811-13090931 40 1.84e-05 ACTTAAGATG GGCATCAC TTGGCTAGAA chrX:1375383-1375503 63 1.84e-05 GGAACTACCT GGCATCAC TGGCCGCCAC chr3R:24234894-24235014 86 1.84e-05 TCGTCGCATT GGCATCAC TGTTCAAACG chr3R:26725349-26725469 107 2.65e-05 TTTAATAATG GGCAGCAT TAAAAC chr3L:12484603-12484723 54 2.65e-05 TTAGCGACTT GGCAGCAT TTTTGTTTCG chr3R:28345432-28345552 104 4.92e-05 GTCGCTAGGT GGCGGCAC TTCTAAAAG chr3L:19556982-19557102 76 5.43e-05 CCCCATGCTG GGCACCAC CGGCAACATT chrX:15080051-15080171 35 5.43e-05 AAGAATGCCG GGCACCAC AAAAAGTTGG chr2R:14986965-14987085 74 6.20e-05 AGAAATGTTT AGCAGCAG CGGACACGAT chr2R:7370394-7370514 17 6.20e-05 CTGCAGAAAA AGCAGCAG GTGTGTTTTT chr3L:9462968-9463088 106 6.20e-05 caacaacaac agcagcag aagcaac chrX:8176401-8176521 98 6.20e-05 GCGAAGAAGA AGCAGCAG CTTAGTAATA chr2L:3417044-3417164 15 6.20e-05 AGGCCGCAGG AGCAGCAG TGGCAGTGCA chrX:6709777-6709897 13 6.20e-05 accacccacc agcagcag aacaacacca chr3R:10592963-10593083 84 6.55e-05 CTGGCAGGCA GGCAGCCC ATTTAGAGAG chr3R:16135742-16135862 22 7.24e-05 GTGTTTCTTT GGCAGCGG GAAAGCCCAT chrX:7995357-7995477 46 7.24e-05 CCATGTCGAT GGCGGCAG ACATATGCTA chr3R:26534886-26535006 18 1.03e-04 TGCTCTTTCT GGCTGCAC CGGCTCCTCT chr3R:17087994-17088114 29 1.03e-04 ATGCGAACTT GGCATCAT TGGTGACTCC chr3R:5111926-5112046 103 1.03e-04 TCAAGTGAGT GGCAGCAA GAAGCGTTGA chr2L:7063945-7064065 61 1.03e-04 AAAAGTGACT GGCATCAT TTAGCAACAA chr2L:7132700-7132820 42 1.03e-04 CCTCCGATTT GGCATCAT TGGGTTCCGT chr2L:2724892-2725012 97 1.30e-04 GATTAGACTG GGCATCGC GATCACGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17305655-17305775 5.2e-06 65_[+1]_47 chr2R:13214603-13214723 5.2e-06 54_[+1]_58 chr3L:1298537-1298657 5.2e-06 76_[+1]_36 chr2L:1500431-1500551 5.2e-06 68_[+1]_44 chr2L:6024514-6024634 5.2e-06 81_[+1]_31 chr2R:7669015-7669135 5.2e-06 67_[+1]_45 chr3R:30180108-30180228 5.2e-06 50_[+1]_62 chr2L:7226737-7226857 5.2e-06 32_[+1]_80 chr2R:24138204-24138324 5.2e-06 62_[+1]_50 chr3L:14212380-14212500 5.2e-06 67_[+1]_45 chrX:15709645-15709765 5.2e-06 45_[+1]_67 chr2R:12521323-12521443 5.2e-06 57_[+1]_55 chrX:13411026-13411146 5.2e-06 56_[+1]_56 chr2R:13183903-13184023 5.2e-06 42_[+1]_70 chr3L:10508131-10508251 5.2e-06 69_[+1]_43 chr3L:7134966-7135086 1e-05 50_[+1]_62 chrX:9139255-9139375 1e-05 69_[+1]_43 chr3L:18889403-18889523 1e-05 8_[+1]_104 chr2R:15811950-15812070 1e-05 59_[+1]_53 chr2L:3158665-3158785 1.8e-05 51_[+1]_61 chr2R:11180835-11180955 1.8e-05 67_[+1]_45 chrX:9600875-9600995 1.8e-05 63_[+1]_49 chrX:13090811-13090931 1.8e-05 39_[+1]_73 chrX:1375383-1375503 1.8e-05 62_[+1]_50 chr3R:24234894-24235014 1.8e-05 85_[+1]_27 chr3R:26725349-26725469 2.6e-05 106_[+1]_6 chr3L:12484603-12484723 2.6e-05 53_[+1]_59 chr3R:28345432-28345552 4.9e-05 103_[+1]_9 chr3L:19556982-19557102 5.4e-05 75_[+1]_37 chrX:15080051-15080171 5.4e-05 34_[+1]_78 chr2R:14986965-14987085 6.2e-05 73_[+1]_39 chr2R:7370394-7370514 6.2e-05 16_[+1]_96 chr3L:9462968-9463088 6.2e-05 105_[+1]_7 chrX:8176401-8176521 6.2e-05 97_[+1]_15 chr2L:3417044-3417164 6.2e-05 14_[+1]_98 chrX:6709777-6709897 6.2e-05 12_[+1]_100 chr3R:10592963-10593083 6.6e-05 83_[+1]_29 chr3R:16135742-16135862 7.2e-05 21_[+1]_91 chrX:7995357-7995477 7.2e-05 45_[+1]_67 chr3R:26534886-26535006 0.0001 17_[+1]_95 chr3R:17087994-17088114 0.0001 28_[+1]_84 chr3R:5111926-5112046 0.0001 102_[+1]_10 chr2L:7063945-7064065 0.0001 60_[+1]_52 chr2L:7132700-7132820 0.0001 41_[+1]_71 chr2L:2724892-2725012 0.00013 96_[+1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCAGCAC width=8 seqs=45 chrX:17305655-17305775 ( 66) GGCAGCAC 1 chr2R:13214603-13214723 ( 55) GGCAGCAC 1 chr3L:1298537-1298657 ( 77) GGCAGCAC 1 chr2L:1500431-1500551 ( 69) GGCAGCAC 1 chr2L:6024514-6024634 ( 82) GGCAGCAC 1 chr2R:7669015-7669135 ( 68) GGCAGCAC 1 chr3R:30180108-30180228 ( 51) GGCAGCAC 1 chr2L:7226737-7226857 ( 33) GGCAGCAC 1 chr2R:24138204-24138324 ( 63) GGCAGCAC 1 chr3L:14212380-14212500 ( 68) GGCAGCAC 1 chrX:15709645-15709765 ( 46) GGCAGCAC 1 chr2R:12521323-12521443 ( 58) GGCAGCAC 1 chrX:13411026-13411146 ( 57) GGCAGCAC 1 chr2R:13183903-13184023 ( 43) GGCAGCAC 1 chr3L:10508131-10508251 ( 70) GGCAGCAC 1 chr3L:7134966-7135086 ( 51) GGCAGCAG 1 chrX:9139255-9139375 ( 70) GGCAGCAG 1 chr3L:18889403-18889523 ( 9) GGCAGCAG 1 chr2R:15811950-15812070 ( 60) GGCAGCAG 1 chr2L:3158665-3158785 ( 52) GGCATCAC 1 chr2R:11180835-11180955 ( 68) GGCATCAC 1 chrX:9600875-9600995 ( 64) GGCATCAC 1 chrX:13090811-13090931 ( 40) GGCATCAC 1 chrX:1375383-1375503 ( 63) GGCATCAC 1 chr3R:24234894-24235014 ( 86) GGCATCAC 1 chr3R:26725349-26725469 ( 107) GGCAGCAT 1 chr3L:12484603-12484723 ( 54) GGCAGCAT 1 chr3R:28345432-28345552 ( 104) GGCGGCAC 1 chr3L:19556982-19557102 ( 76) GGCACCAC 1 chrX:15080051-15080171 ( 35) GGCACCAC 1 chr2R:14986965-14987085 ( 74) AGCAGCAG 1 chr2R:7370394-7370514 ( 17) AGCAGCAG 1 chr3L:9462968-9463088 ( 106) AGCAGCAG 1 chrX:8176401-8176521 ( 98) AGCAGCAG 1 chr2L:3417044-3417164 ( 15) AGCAGCAG 1 chrX:6709777-6709897 ( 13) AGCAGCAG 1 chr3R:10592963-10593083 ( 84) GGCAGCCC 1 chr3R:16135742-16135862 ( 22) GGCAGCGG 1 chrX:7995357-7995477 ( 46) GGCGGCAG 1 chr3R:26534886-26535006 ( 18) GGCTGCAC 1 chr3R:17087994-17088114 ( 29) GGCATCAT 1 chr3R:5111926-5112046 ( 103) GGCAGCAA 1 chr2L:7063945-7064065 ( 61) GGCATCAT 1 chr2L:7132700-7132820 ( 42) GGCATCAT 1 chr2L:2724892-2725012 ( 97) GGCATCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3386 E= 8.7e-023 -115 -1214 213 -1214 -1214 -1214 234 -1214 -1214 233 -1214 -1214 166 -1214 -215 -379 -1214 -216 189 -48 -1214 233 -1214 -1214 166 -316 -215 -1214 -373 160 43 -147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 8.7e-023 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.933333 0.000000 0.044444 0.022222 0.000000 0.044444 0.733333 0.222222 0.000000 1.000000 0.000000 0.000000 0.933333 0.022222 0.044444 0.000000 0.022222 0.600000 0.266667 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGCAC MEME-1 regular expression -------------------------------------------------------------------------------- GGCA[GT]CA[CG] -------------------------------------------------------------------------------- Time 7.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCTGCC MEME-2 width = 8 sites = 27 llr = 265 E-value = 5.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCTGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::2:1:: pos.-specific C :::7::aa probability G 7:a::9:: matrix T :a::a::: bits 2.3 * * 2.1 * ** 1.9 * *** 1.6 ** *** Relative 1.4 ** **** Entropy 1.2 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGCTGCC consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6036863-6036983 53 5.67e-06 TCATGCAGCA GTGCTGCC AACTCACGCA chr2R:23862705-23862825 111 5.67e-06 AAACCTTGCA GTGCTGCC CA chr2R:10156245-10156365 36 5.67e-06 CCAGCGCAAA GTGCTGCC CATCACCATA chrX:1460654-1460774 35 5.67e-06 ATCGAAAACA GTGCTGCC CATCTGTATA chr3R:28345432-28345552 32 5.67e-06 CAATCTCTTA GTGCTGCC CATACAAAAT chr2L:3417044-3417164 47 5.67e-06 AGCGCATCAA GTGCTGCC ATTGCAGCCA chr3R:14259954-14260074 51 5.67e-06 TGTGCCACCA GTGCTGCC CATCACTCGG chr3R:8250324-8250444 36 5.67e-06 CGCCCATCCA GTGCTGCC AAGTAACTGA chr2R:13183903-13184023 16 5.67e-06 TGGCGCGCAA GTGCTGCC AAGAGTCAGC chr3L:10508131-10508251 97 5.67e-06 TCGTAAAACA GTGCTGCC AGAATTCTGT chrX:12890430-12890550 31 2.26e-05 AGTCCACCAA GTGATGCC AAAGTTCATC chr3L:13387780-13387900 62 2.26e-05 ATATGAGCCA GTGATGCC GTTGACTAGT chr2R:7676417-7676537 63 2.26e-05 GATTACTCCA ATGCTGCC AATAGGGCCC chr3L:2567162-2567282 30 2.26e-05 CTCCAGAGCG GTGATGCC CAGCGACCAC chrX:7995357-7995477 29 2.26e-05 ACGTGTGCCA GTGATGCC CATGTCGATG chr2L:8740910-8741030 105 2.26e-05 ATGATGTTTG ATGCTGCC AATGTAAA chr3R:22094056-22094176 9 2.26e-05 AAAAGACA ATGCTGCC AAGTGCTGAA chrX:4647797-4647917 45 2.26e-05 GGCAGTATCC ATGCTGCC CATCGATAGG chr2R:9071876-9071996 56 3.11e-05 AGTAACTAAA GTGCTACC CCCTGTACCC chr2R:13963638-13963758 69 3.11e-05 GCTGCAAACA GTGCTACC CATGCTTGCT chrX:17422137-17422257 47 3.11e-05 TAGCGCGCCA GTGCTACC CATAGAAAAG chr3L:18080115-18080235 19 3.47e-05 TGGCCCCAGG GTGCGGCC CGTCGCTTTT chrX:8592769-8592889 59 4.60e-05 gcttttgtcg ctgctgCC GCGCGAAGCA chr3L:22466056-22466176 73 4.60e-05 CCACACTTGA GTGGTGCC CATCGTTTCT chr3R:26725349-26725469 83 5.87e-05 TTTGCAATCA ATGATGCC AATATTTTTA chr3R:16135742-16135862 44 5.87e-05 GCCCATGCCC ATGATGCC CATGCCCACA chrX:15709846-15709966 42 6.75e-05 AATTTCCACT GTGCTGTC TGCGCTCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6036863-6036983 5.7e-06 52_[+2]_60 chr2R:23862705-23862825 5.7e-06 110_[+2]_2 chr2R:10156245-10156365 5.7e-06 35_[+2]_77 chrX:1460654-1460774 5.7e-06 34_[+2]_78 chr3R:28345432-28345552 5.7e-06 31_[+2]_81 chr2L:3417044-3417164 5.7e-06 46_[+2]_66 chr3R:14259954-14260074 5.7e-06 50_[+2]_62 chr3R:8250324-8250444 5.7e-06 35_[+2]_77 chr2R:13183903-13184023 5.7e-06 15_[+2]_97 chr3L:10508131-10508251 5.7e-06 96_[+2]_16 chrX:12890430-12890550 2.3e-05 30_[+2]_82 chr3L:13387780-13387900 2.3e-05 61_[+2]_51 chr2R:7676417-7676537 2.3e-05 62_[+2]_50 chr3L:2567162-2567282 2.3e-05 29_[+2]_83 chrX:7995357-7995477 2.3e-05 28_[+2]_84 chr2L:8740910-8741030 2.3e-05 104_[+2]_8 chr3R:22094056-22094176 2.3e-05 8_[+2]_104 chrX:4647797-4647917 2.3e-05 44_[+2]_68 chr2R:9071876-9071996 3.1e-05 55_[+2]_57 chr2R:13963638-13963758 3.1e-05 68_[+2]_44 chrX:17422137-17422257 3.1e-05 46_[+2]_66 chr3L:18080115-18080235 3.5e-05 18_[+2]_94 chrX:8592769-8592889 4.6e-05 58_[+2]_54 chr3L:22466056-22466176 4.6e-05 72_[+2]_40 chr3R:26725349-26725469 5.9e-05 82_[+2]_30 chr3R:16135742-16135862 5.9e-05 43_[+2]_69 chrX:15709846-15709966 6.8e-05 41_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCTGCC width=8 seqs=27 chr2L:6036863-6036983 ( 53) GTGCTGCC 1 chr2R:23862705-23862825 ( 111) GTGCTGCC 1 chr2R:10156245-10156365 ( 36) GTGCTGCC 1 chrX:1460654-1460774 ( 35) GTGCTGCC 1 chr3R:28345432-28345552 ( 32) GTGCTGCC 1 chr2L:3417044-3417164 ( 47) GTGCTGCC 1 chr3R:14259954-14260074 ( 51) GTGCTGCC 1 chr3R:8250324-8250444 ( 36) GTGCTGCC 1 chr2R:13183903-13184023 ( 16) GTGCTGCC 1 chr3L:10508131-10508251 ( 97) GTGCTGCC 1 chrX:12890430-12890550 ( 31) GTGATGCC 1 chr3L:13387780-13387900 ( 62) GTGATGCC 1 chr2R:7676417-7676537 ( 63) ATGCTGCC 1 chr3L:2567162-2567282 ( 30) GTGATGCC 1 chrX:7995357-7995477 ( 29) GTGATGCC 1 chr2L:8740910-8741030 ( 105) ATGCTGCC 1 chr3R:22094056-22094176 ( 9) ATGCTGCC 1 chrX:4647797-4647917 ( 45) ATGCTGCC 1 chr2R:9071876-9071996 ( 56) GTGCTACC 1 chr2R:13963638-13963758 ( 69) GTGCTACC 1 chrX:17422137-17422257 ( 47) GTGCTACC 1 chr3L:18080115-18080235 ( 19) GTGCGGCC 1 chrX:8592769-8592889 ( 59) CTGCTGCC 1 chr3L:22466056-22466176 ( 73) GTGGTGCC 1 chr3R:26725349-26725469 ( 83) ATGATGCC 1 chr3R:16135742-16135862 ( 44) ATGATGCC 1 chrX:15709846-15709966 ( 42) GTGCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2246 E= 5.2e-009 -41 -242 191 -1140 -1140 -1140 -1140 169 -1140 -1140 234 -1140 -41 190 -241 -1140 -1140 -1140 -241 164 -141 -1140 217 -1140 -1140 228 -1140 -306 -1140 233 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 5.2e-009 0.222222 0.037037 0.740741 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.222222 0.740741 0.037037 0.000000 0.000000 0.000000 0.037037 0.962963 0.111111 0.000000 0.888889 0.000000 0.000000 0.962963 0.000000 0.037037 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCC MEME-2 regular expression -------------------------------------------------------------------------------- [GA]TG[CA]TGCC -------------------------------------------------------------------------------- Time 13.97 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-3 width = 8 sites = 76 llr = 586 E-value = 1.9e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A aa9a77aa pos.-specific C ::1:12:: probability G ::::11:: matrix T ::::1::: bits 2.3 2.1 1.9 ** ** 1.6 ** * ** Relative 1.4 ** * ** Entropy 1.2 **** ** (11.1 bits) 0.9 **** ** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16173983-16174103 17 5.74e-05 cgtaaactcg aaaaaaaa aaCGGACTGC chr3L:10365063-10365183 35 5.74e-05 aaaaaatgaa aaaaaaaa tctgaaaaaa chr2R:15906097-15906217 93 5.74e-05 caaaagctgc aaaaaaaa aTCTGCAAAT chr3L:13178318-13178438 29 5.74e-05 CTTTTAACAA AAAAAAAA GGTATCCAAA chr2R:23637812-23637932 83 5.74e-05 CGTGCGTGCT AAAAAAAA GGGTTAAGGG chr2R:14986965-14987085 10 5.74e-05 aaaaaaaaa aaaaaaaa CATTCCCCGC chr2R:19617332-19617452 56 5.74e-05 AAACACGTTT aaaaaaaa aaaaaaaaaC chr3L:7134966-7135086 14 5.74e-05 TAGCAGCCAT AAAAAAAA Tacaacacca chr3L:16842361-16842481 21 5.74e-05 AGTGCAACTT AAAAAAAA CTTGTAAAAG chr2R:8655386-8655506 55 5.74e-05 CTGGAACTCa aaaaaaaa agaaaagaaa chrX:4435054-4435174 93 5.74e-05 GATACAACAA AAAAAAAA AGGGAATACC chr3L:5551175-5551295 55 5.74e-05 CACTCGACAC AAAAAAAA GACTAAAAAT chr2R:17136202-17136322 19 5.74e-05 ATATTTCATT AAAAAAAA GCTTTATGAT chr2R:19157696-19157816 65 5.74e-05 aaaaaagaaa aaaaaaaa gaaCGGAGCT chrX:19359231-19359351 105 5.74e-05 gaaaaataaa aaaaaaaa aCTGAGGG chr3R:8349989-8350109 64 5.74e-05 CATAAAGTGA AAAAAAAA ACACAAACGC chr2R:17266169-17266289 61 5.74e-05 ACTTAAAAAC AAAAAAAA AAGAGATCGT chrX:18544902-18545022 113 5.74e-05 aaaaacaaaa aaaaaaaa chr2L:12543986-12544106 11 5.74e-05 TTCACAATGC AAAAAAAA TGGCAAGGGA chrX:8592769-8592889 79 5.74e-05 GCGAAGCATA AAAAAAAA GTCGCCAGCA chr3R:25596781-25596901 55 5.74e-05 gaaccaaaaa aaaaaaaa agagtacaca chrX:17488540-17488660 4 5.74e-05 gcg aaaaaaaa taaatgaaca chrX:14098373-14098493 58 5.74e-05 AAAAGGCATT AAAAAAAA ACTACATATG chrX:17806442-17806562 90 5.74e-05 aaaaatcgca aaaaaaaa atatataaag chr3R:26004540-26004660 44 5.74e-05 CAAAATCTTA AAAAAAAA GCGAAACACA chrX:9344299-9344419 35 5.74e-05 aaagacaaaa aaaaaaaa aTATATATAT chr2R:18879219-18879339 96 5.74e-05 AAAAACGCGC AAAAAAAA GTTATAAGAA chr3R:5111926-5112046 45 5.74e-05 GACAGCAGCA AAAAAAAA AGAAGCATAT chr2R:15811950-15812070 97 5.74e-05 AGCAAAAAGT AAAAAAAA GGGGTATGGG chr2L:18457079-18457199 28 9.59e-05 AATGAAGAAC AAAAACAA CAAGCAGGGG chrX:8176602-8176722 66 9.59e-05 GCAcaagagc aaaaacaa tagcaacagc chr3L:11634644-11634764 74 9.59e-05 AGTCAGAAGA AAAAACAA AATAAAAATA chr3L:19793042-19793162 35 9.59e-05 CGGTCCAAAC AAAAACAA AAGCGCGAAG chr3L:8360446-8360566 32 9.59e-05 GTGCAAAGAA AAAAACAA AACAGCGGCA chr3L:6447840-6447960 33 9.59e-05 AAAAGTTGTA AAAAACAA ACACTCGTTG chr2R:11180835-11180955 40 9.59e-05 aaaataaaac aaaaacaa aaaccaagaa chr3R:9933502-9933622 63 9.59e-05 TGCTTATTGC AAAAACAA ACAATATGGG chr3R:14716668-14716788 79 1.34e-04 CTGAGACTTT AAAAGAAA ATGTGTAAAA chr3L:9377909-9378029 89 1.34e-04 GAAATGCAAG AAAAGAAA ACACAAGAAA chrX:5051198-5051318 35 1.34e-04 cggaaaaaga aaaagaaa agagtgcgga chr2L:13884764-13884884 60 1.34e-04 AAAATAGTTA AAAAGAAA AACCCTGTAT chr3L:16842161-16842281 55 1.34e-04 CGGGGTATAA AAAAGAAA TACTAGGTAA chrX:13879590-13879710 10 1.34e-04 GCAAAAAGT AAAAGAAA GCAAAAGTTG chr2L:1500431-1500551 24 1.34e-04 AAGCAAGAAG AAAAGAAA TGTGACCGGT chr2L:8420439-8420559 77 1.72e-04 CTGAGCCATg aaaaagaa gaagcagaag chr3R:30285142-30285262 13 1.72e-04 AAAAAATTGC AAAAAGAA GAGTGGAAAC chrX:17422137-17422257 89 1.72e-04 AGATGAGGAA AAAAAGAA GCATAAGCGC chrX:13090811-13090931 1 1.72e-04 . AAAAAGAA TCATAAATAT chr3R:20556837-20556957 102 2.11e-04 GGAGGAAAAT AACAAAAA CCAAATGGGG chr2R:7370394-7370514 72 2.11e-04 AAGCTCTGCG AACAAAAA CACGCAGAAC chr3L:16854384-16854504 41 2.11e-04 Taaaaaagga aacaaaaa aataacaaga chr2L:7063945-7064065 74 2.11e-04 ATCATTTAGC AACAAAAA ACGCGAATAG chr3R:6102471-6102591 89 2.71e-04 ATAATAATTC AAAATAAA TTAGATTTGG chr3L:12615204-12615324 80 2.71e-04 GGAACCATTA AAAATAAA CTGACTTGCG chr3R:27069322-27069442 113 2.71e-04 GCGTATATAA AAAATAAA chr2R:7676417-7676537 99 2.71e-04 TCGAAATTCA AAAATAAA TAAATAACAC chr3R:17087994-17088114 102 2.71e-04 AGtaaataaa aaaataaa taaattgaat chr3R:9389140-9389260 59 2.71e-04 TCCAATGAAG AAAATAAA AACCAATGAC chr3R:30180108-30180228 27 2.71e-04 ATTAAAATTC AAAATAAA AACGTAACGT chr3R:29570398-29570518 52 3.10e-04 TCATTTGCAT AAAACAAA GTCATTGCTT chr2R:11544120-11544240 22 3.10e-04 GTGTGCACAG AAAACAAA TGGGAGTTAC chr3R:16135742-16135862 80 3.10e-04 AAAAGGAGGG Aaaacaaa caaacaaaca chrX:13644788-13644908 64 3.35e-04 ATAAAAGTAT AAAAGCAA CATTTTTACA chr3R:22094056-22094176 60 3.35e-04 ACAACGTACT AAAAGCAA CTAAGGATTG chrX:16723733-16723853 21 3.61e-04 caacaaaacc aacaacaa cagctaaaga chr3L:9462968-9463088 97 3.61e-04 TGTGAGCGGc aacaacaa cagcagcaga chr3L:15220479-15220599 30 4.25e-04 AAAATTGAGC AAACAAAA TAATGCCTAT chr2L:3352003-3352123 108 4.25e-04 CGATTCAATC AAAAGGAA CATAG chr3L:20592680-20592800 76 4.25e-04 TCCTAAAGTT AAACAAAA TACGATATCA chr3R:26725349-26725469 29 4.25e-04 ATTATCATTG AAACAAAA TATTTCCAGT chr3L:20582503-20582623 77 5.29e-04 AAAGTTAGGC AAGAAAAA GTAGTATCCT chr3L:8358261-8358381 68 5.29e-04 TTATAAATTT AAGAAAAA ATTGTTCAAT chr3L:3106288-3106408 67 5.81e-04 CAATTAGCAT AACAAGAA TAACAATCAA chrX:9600875-9600995 23 5.81e-04 TAAACCATTA AAAACCAA GTGGCAACGT chrX:15080051-15080171 22 5.81e-04 GACTAGAAGG AACAAGAA TGCCGGGCAC chr2L:168427-168547 102 6.21e-04 CACCGAGAGG AAAATGAA GCTAAACTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16173983-16174103 5.7e-05 16_[+3]_96 chr3L:10365063-10365183 5.7e-05 34_[+3]_78 chr2R:15906097-15906217 5.7e-05 92_[+3]_20 chr3L:13178318-13178438 5.7e-05 28_[+3]_84 chr2R:23637812-23637932 5.7e-05 82_[+3]_30 chr2R:14986965-14987085 5.7e-05 9_[+3]_103 chr2R:19617332-19617452 5.7e-05 55_[+3]_57 chr3L:7134966-7135086 5.7e-05 13_[+3]_99 chr3L:16842361-16842481 5.7e-05 20_[+3]_92 chr2R:8655386-8655506 5.7e-05 54_[+3]_58 chrX:4435054-4435174 5.7e-05 92_[+3]_20 chr3L:5551175-5551295 5.7e-05 54_[+3]_58 chr2R:17136202-17136322 5.7e-05 18_[+3]_94 chr2R:19157696-19157816 5.7e-05 64_[+3]_48 chrX:19359231-19359351 5.7e-05 104_[+3]_8 chr3R:8349989-8350109 5.7e-05 63_[+3]_49 chr2R:17266169-17266289 5.7e-05 60_[+3]_52 chrX:18544902-18545022 5.7e-05 112_[+3] chr2L:12543986-12544106 5.7e-05 10_[+3]_102 chrX:8592769-8592889 5.7e-05 78_[+3]_34 chr3R:25596781-25596901 5.7e-05 54_[+3]_58 chrX:17488540-17488660 5.7e-05 3_[+3]_109 chrX:14098373-14098493 5.7e-05 57_[+3]_55 chrX:17806442-17806562 5.7e-05 89_[+3]_23 chr3R:26004540-26004660 5.7e-05 43_[+3]_69 chrX:9344299-9344419 5.7e-05 34_[+3]_78 chr2R:18879219-18879339 5.7e-05 95_[+3]_17 chr3R:5111926-5112046 5.7e-05 44_[+3]_68 chr2R:15811950-15812070 5.7e-05 96_[+3]_16 chr2L:18457079-18457199 9.6e-05 27_[+3]_85 chrX:8176602-8176722 9.6e-05 65_[+3]_47 chr3L:11634644-11634764 9.6e-05 73_[+3]_39 chr3L:19793042-19793162 9.6e-05 34_[+3]_78 chr3L:8360446-8360566 9.6e-05 31_[+3]_81 chr3L:6447840-6447960 9.6e-05 32_[+3]_80 chr2R:11180835-11180955 9.6e-05 39_[+3]_73 chr3R:9933502-9933622 9.6e-05 62_[+3]_50 chr3R:14716668-14716788 0.00013 78_[+3]_34 chr3L:9377909-9378029 0.00013 88_[+3]_24 chrX:5051198-5051318 0.00013 34_[+3]_78 chr2L:13884764-13884884 0.00013 59_[+3]_53 chr3L:16842161-16842281 0.00013 54_[+3]_58 chrX:13879590-13879710 0.00013 9_[+3]_103 chr2L:1500431-1500551 0.00013 23_[+3]_89 chr2L:8420439-8420559 0.00017 76_[+3]_36 chr3R:30285142-30285262 0.00017 12_[+3]_100 chrX:17422137-17422257 0.00017 88_[+3]_24 chrX:13090811-13090931 0.00017 [+3]_112 chr3R:20556837-20556957 0.00021 101_[+3]_11 chr2R:7370394-7370514 0.00021 71_[+3]_41 chr3L:16854384-16854504 0.00021 40_[+3]_72 chr2L:7063945-7064065 0.00021 73_[+3]_39 chr3R:6102471-6102591 0.00027 88_[+3]_24 chr3L:12615204-12615324 0.00027 79_[+3]_33 chr3R:27069322-27069442 0.00027 112_[+3] chr2R:7676417-7676537 0.00027 98_[+3]_14 chr3R:17087994-17088114 0.00027 101_[+3]_11 chr3R:9389140-9389260 0.00027 58_[+3]_54 chr3R:30180108-30180228 0.00027 26_[+3]_86 chr3R:29570398-29570518 0.00031 51_[+3]_61 chr2R:11544120-11544240 0.00031 21_[+3]_91 chr3R:16135742-16135862 0.00031 79_[+3]_33 chrX:13644788-13644908 0.00034 63_[+3]_49 chr3R:22094056-22094176 0.00034 59_[+3]_53 chrX:16723733-16723853 0.00036 20_[+3]_92 chr3L:9462968-9463088 0.00036 96_[+3]_16 chr3L:15220479-15220599 0.00043 29_[+3]_83 chr2L:3352003-3352123 0.00043 107_[+3]_5 chr3L:20592680-20592800 0.00043 75_[+3]_37 chr3R:26725349-26725469 0.00043 28_[+3]_84 chr3L:20582503-20582623 0.00053 76_[+3]_36 chr3L:8358261-8358381 0.00053 67_[+3]_45 chr3L:3106288-3106408 0.00058 66_[+3]_46 chrX:9600875-9600995 0.00058 22_[+3]_90 chrX:15080051-15080171 0.00058 21_[+3]_91 chr2L:168427-168547 0.00062 101_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=76 chr3L:16173983-16174103 ( 17) AAAAAAAA 1 chr3L:10365063-10365183 ( 35) AAAAAAAA 1 chr2R:15906097-15906217 ( 93) AAAAAAAA 1 chr3L:13178318-13178438 ( 29) AAAAAAAA 1 chr2R:23637812-23637932 ( 83) AAAAAAAA 1 chr2R:14986965-14987085 ( 10) AAAAAAAA 1 chr2R:19617332-19617452 ( 56) AAAAAAAA 1 chr3L:7134966-7135086 ( 14) AAAAAAAA 1 chr3L:16842361-16842481 ( 21) AAAAAAAA 1 chr2R:8655386-8655506 ( 55) AAAAAAAA 1 chrX:4435054-4435174 ( 93) AAAAAAAA 1 chr3L:5551175-5551295 ( 55) AAAAAAAA 1 chr2R:17136202-17136322 ( 19) AAAAAAAA 1 chr2R:19157696-19157816 ( 65) AAAAAAAA 1 chrX:19359231-19359351 ( 105) AAAAAAAA 1 chr3R:8349989-8350109 ( 64) AAAAAAAA 1 chr2R:17266169-17266289 ( 61) AAAAAAAA 1 chrX:18544902-18545022 ( 113) AAAAAAAA 1 chr2L:12543986-12544106 ( 11) AAAAAAAA 1 chrX:8592769-8592889 ( 79) AAAAAAAA 1 chr3R:25596781-25596901 ( 55) AAAAAAAA 1 chrX:17488540-17488660 ( 4) AAAAAAAA 1 chrX:14098373-14098493 ( 58) AAAAAAAA 1 chrX:17806442-17806562 ( 90) AAAAAAAA 1 chr3R:26004540-26004660 ( 44) AAAAAAAA 1 chrX:9344299-9344419 ( 35) AAAAAAAA 1 chr2R:18879219-18879339 ( 96) AAAAAAAA 1 chr3R:5111926-5112046 ( 45) AAAAAAAA 1 chr2R:15811950-15812070 ( 97) AAAAAAAA 1 chr2L:18457079-18457199 ( 28) AAAAACAA 1 chrX:8176602-8176722 ( 66) AAAAACAA 1 chr3L:11634644-11634764 ( 74) AAAAACAA 1 chr3L:19793042-19793162 ( 35) AAAAACAA 1 chr3L:8360446-8360566 ( 32) AAAAACAA 1 chr3L:6447840-6447960 ( 33) AAAAACAA 1 chr2R:11180835-11180955 ( 40) AAAAACAA 1 chr3R:9933502-9933622 ( 63) AAAAACAA 1 chr3R:14716668-14716788 ( 79) AAAAGAAA 1 chr3L:9377909-9378029 ( 89) AAAAGAAA 1 chrX:5051198-5051318 ( 35) AAAAGAAA 1 chr2L:13884764-13884884 ( 60) AAAAGAAA 1 chr3L:16842161-16842281 ( 55) AAAAGAAA 1 chrX:13879590-13879710 ( 10) AAAAGAAA 1 chr2L:1500431-1500551 ( 24) AAAAGAAA 1 chr2L:8420439-8420559 ( 77) AAAAAGAA 1 chr3R:30285142-30285262 ( 13) AAAAAGAA 1 chrX:17422137-17422257 ( 89) AAAAAGAA 1 chrX:13090811-13090931 ( 1) AAAAAGAA 1 chr3R:20556837-20556957 ( 102) AACAAAAA 1 chr2R:7370394-7370514 ( 72) AACAAAAA 1 chr3L:16854384-16854504 ( 41) AACAAAAA 1 chr2L:7063945-7064065 ( 74) AACAAAAA 1 chr3R:6102471-6102591 ( 89) AAAATAAA 1 chr3L:12615204-12615324 ( 80) AAAATAAA 1 chr3R:27069322-27069442 ( 113) AAAATAAA 1 chr2R:7676417-7676537 ( 99) AAAATAAA 1 chr3R:17087994-17088114 ( 102) AAAATAAA 1 chr3R:9389140-9389260 ( 59) AAAATAAA 1 chr3R:30180108-30180228 ( 27) AAAATAAA 1 chr3R:29570398-29570518 ( 52) AAAACAAA 1 chr2R:11544120-11544240 ( 22) AAAACAAA 1 chr3R:16135742-16135862 ( 80) AAAACAAA 1 chrX:13644788-13644908 ( 64) AAAAGCAA 1 chr3R:22094056-22094176 ( 60) AAAAGCAA 1 chrX:16723733-16723853 ( 21) AACAACAA 1 chr3L:9462968-9463088 ( 97) AACAACAA 1 chr3L:15220479-15220599 ( 30) AAACAAAA 1 chr2L:3352003-3352123 ( 108) AAAAGGAA 1 chr3L:20592680-20592800 ( 76) AAACAAAA 1 chr3R:26725349-26725469 ( 29) AAACAAAA 1 chr3L:20582503-20582623 ( 77) AAGAAAAA 1 chr3L:8358261-8358381 ( 68) AAGAAAAA 1 chr3L:3106288-3106408 ( 67) AACAAGAA 1 chrX:9600875-9600995 ( 23) AAAACCAA 1 chrX:15080051-15080171 ( 22) AACAAGAA 1 chr2L:168427-168547 ( 102) AAAATGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.97718 E= 1.9e-013 176 -1289 -1289 -1289 176 -1289 -1289 -1289 156 -91 -291 -1289 170 -233 -1289 -1289 127 -191 -59 -155 129 -21 -91 -1289 176 -1289 -1289 -1289 176 -1289 -1289 -1289 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 1.9e-013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.868421 0.105263 0.026316 0.000000 0.960526 0.039474 0.000000 0.000000 0.710526 0.052632 0.131579 0.105263 0.723684 0.171053 0.105263 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-3 regular expression -------------------------------------------------------------------------------- AAAAAAAA -------------------------------------------------------------------------------- Time 20.25 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-4 width = 8 sites = 89 llr = 659 E-value = 5.4e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1:::1: pos.-specific C :::1:::: probability G :::21:1: matrix T aa979a8a bits 2.3 2.1 1.9 1.6 ** * * Relative 1.4 ** * * Entropy 1.2 *** ** * (10.7 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21634857-21634977 93 8.31e-05 TGCAAGATGG TTTTTTTT TTTCGCCTAC chrX:12672761-12672881 11 8.31e-05 tttttacatt tttttttt cgttaatttt chr3R:16210861-16210981 7 8.31e-05 CGTACC TTTTTTTT TCCTAAGAAT chr3L:9551316-9551436 64 8.31e-05 TGTTGTATTT TTTTTTTT GTAGTTGCTT chr3L:7134966-7135086 111 8.31e-05 CTGTTGATTT TTTTTTTT TG chrX:7290973-7291093 35 8.31e-05 cctttttcct tttttttt cctttgtgtt chr3L:539910-540030 78 8.31e-05 TGCAAACAGT TTTTTTTT CTCTCTTGCT chr3R:11865289-11865409 24 8.31e-05 TTGTTTACAC TTTTTTTT TTGCGCAGAC chrX:6730724-6730844 112 8.31e-05 TGCCTTGCTA TTTTTTTT A chr2R:10474740-10474860 14 8.31e-05 AGATCTTGTT TTTTTTTT CTTTTCGCTG chr3L:9377909-9378029 66 8.31e-05 TTCTCGCTTC TTTTTTTT TGTGTGAAAT chr3L:6155248-6155368 46 8.31e-05 TTCGGTTTCG tttttttt ttttaattgt chr3L:12615204-12615324 24 8.31e-05 GAttcttttt tttttttt ttttggtttt chr3L:6447840-6447960 68 8.31e-05 CTTGTTTTGT TTTTTTTT CGCCGCAAAA chr3L:5943680-5943800 70 8.31e-05 tttttttttc tttttttt tttGGTTGCA chr2L:19144289-19144409 88 8.31e-05 ttatttattt tttttttt tggttttGCG chr3R:30005476-30005596 58 8.31e-05 ttctttttca tttttttt ttCGTTGCAT chr3R:21938653-21938773 105 8.31e-05 TTTTAATTCT TTTTTTTT CGAACTTT chrX:5769009-5769129 26 8.31e-05 ttcatttcgg ttTTTTTT ATGGATGCGT chr3R:30289460-30289580 84 8.31e-05 GTTGTCTCGT TTTTTTTT TACTTGCACT chr2L:16562496-16562616 49 8.31e-05 ctttcttatg tttttttt tttttttttG chr3L:18080115-18080235 106 8.31e-05 TTATTTTCAT TTTTTTTT CGCTTTT chr3L:11136501-11136621 9 8.31e-05 CTGGGGGT TTTTTTTT CCCtgttgat chr3L:10534021-10534141 108 8.31e-05 GTTTTTCTTC TTTTTTTT TTGTA chrX:7980913-7981033 100 8.31e-05 aatagttttc tttttttt ttcctttttt chr3R:9381090-9381210 64 8.31e-05 TTTAGTTTAT TTTTTTTT TGTATATTTG chr3R:18146805-18146925 35 8.31e-05 ctttttccca tttttttt tcttCGCCCA chr3R:10592963-10593083 29 8.31e-05 TTTTGCATCT TTTTTTTT TGCATTTTTA chrX:7973430-7973550 43 8.31e-05 TTTATTGGTT TTTTTTTT ACTTTTTGCT chr3R:26543588-26543708 92 8.31e-05 GCAAGTTACG TTTTTTTT GTATTCTTTT chr3R:24004090-24004210 55 8.31e-05 ttttttaggt tttttttt tGTGCTACGG chr3L:12484802-12484922 35 8.31e-05 GTTTCCTTCT TTTTTTTT CGAAAATGTT chr2L:5372717-5372837 61 1.36e-04 AGCTTTCAAG TTTGTTTT GATCACTTGG chrX:16723733-16723853 101 1.36e-04 tgttttggta tttgtttt gatttccttt chr2L:11069707-11069827 81 1.36e-04 GCGCAAGTTA TTTGTTTT TTCTAACAGC chr2R:17136202-17136322 112 1.36e-04 TTGTTTACGT TTTGTTTT C chr2R:17266169-17266289 93 1.36e-04 TTTTTTTCCT TTTGTTTT CTCTCTTTTT chr2L:4375216-4375336 66 1.36e-04 TTGGCCATGT TTTGTTTT CATTTTTTtc chr3R:17088201-17088321 12 1.36e-04 AAGTTTTCTA TTTGTTTT ATATAAATAA chr2L:168427-168547 70 1.36e-04 TTGTTCGCTC TTTGTTTT GCAAATTCTG chrX:17726091-17726211 37 1.36e-04 GTGCTTCTTt tttgtttt gtttcgacta chr2R:20580823-20580943 87 1.36e-04 TGGACTGTGC tttgtttt ttatttcttt chrX:13879590-13879710 47 1.36e-04 TGCGTTGATt tttgtttt tgttttgctt chr2R:21531933-21532053 44 1.36e-04 TCTTTTTCCA TTTGTTTT TCAATTATTT chr3R:13716220-13716340 44 1.36e-04 tttccctcgc tttgtttt ctttcgtttc chr2R:18879219-18879339 10 1.36e-04 AAATTCGCT TTTGTTTT ATGATTTTCA chr3R:24234894-24235014 107 1.36e-04 TCAAACGTCA TTTGTTTT ATAGGA chr2L:6036863-6036983 3 2.42e-04 GT TTTCTTTT CCAATTGTTA chr2L:18484685-18484805 62 2.42e-04 AATTTCAGTA TTTCTTTT ATTTATGTAT chr2R:23637812-23637932 2 2.42e-04 t ttttttgt atttgtatct chr3L:2873202-2873322 113 2.42e-04 ATTTTCTTTA TTTTTTGT chr2L:5493974-5494094 12 2.42e-04 TGGTTCGTAA TTTCTTTT TAGCATGAAG chrX:6708194-6708314 98 2.42e-04 TTCTCTTCTT TTTCTTTT TTGGGATATG chr3R:27069322-27069442 85 2.42e-04 TGTGCGTTTT TTTCTTTT TATGGGCTTT chr3L:3304128-3304248 61 2.42e-04 TGGAAGTTAT TTTCTTTT CTTTCTCCAC chr2L:8741161-8741281 5 2.42e-04 GCAC TTTTTTGT GTTAAAATTA chr2R:15063753-15063873 55 2.42e-04 AAAGTCCACA TTTCTTTT ATATGTATAT chr3L:8358261-8358381 86 2.42e-04 ATTGTTCAAT TTTTTTGT ATAAACAGTA chrX:13116639-13116759 7 2.42e-04 ttctgt ttttttGT GGCTCATCTG chr2R:10156245-10156365 113 2.42e-04 gtttttttga ttttttgt chr3L:15220479-15220599 47 2.95e-04 ATAATGCCTA TTTTGTTT ATAGAAAAAT chr3L:19793042-19793162 68 2.95e-04 Atggttttct ttttgttt cagtttatgt chr3L:13387780-13387900 40 2.95e-04 CTCCGGCGGG TTTTGTTT ATTTATATGA chrX:5051198-5051318 70 2.95e-04 aagaaCTTCA TTTTGTTT GGTTTTGCAG chr2R:8995119-8995239 79 2.95e-04 TCTTAGATAC TTTTGTTT GCCCATATTA chrX:8176401-8176521 44 2.95e-04 tttaacttgc ttttgttt CGCTGTGTGT chr2L:7226737-7226857 92 2.95e-04 TTCATTTCTC TTTTGTTT GGGCTGCgtt chr3L:12484603-12484723 62 2.95e-04 TTGGCAGCAT TTTTGTTT CGGTTTAAGA chr3L:21892813-21892933 102 3.29e-04 GGCGACAATA TTTGTTGT GCACTCGACG chr3R:26534886-26535006 69 3.29e-04 ttctgctacc tttGTTGT CTTTTTTGCA chr3L:2817971-2818091 30 4.96e-04 TTTTTCTTAT TTATTTTT TTGGCGAGTG chrX:12890430-12890550 113 4.96e-04 ATAGAGACTA TTATTTTT chr2L:20916906-20917026 111 4.96e-04 gctgcacttg ttcttttt ct chr2L:8420439-8420559 6 4.96e-04 TCTGG TTCTTTTT TCGTTGCTGC chr2L:11014835-11014955 93 4.96e-04 AATAACTTTG TTATTTTT GTTATTTTGA chr3R:30014027-30014147 52 4.96e-04 GACCTTTCTC TTCTTTTT GCCCGGGGTA chr2R:9498794-9498914 12 4.96e-04 AAGTTAGTAA TTATTTTT ATTGATTGCC chr3R:29279727-29279847 101 5.75e-04 ATATTTTTGA TTTTTTAT TAATTAAGTT chr2L:2484291-2484411 30 5.75e-04 TTTGGGTGTA TTTTTTAT AGTTCGCAAA chr2R:22596940-22597060 77 5.75e-04 AGTTGGACAT TTTTTTAT TGGGGTCGGC chr3R:13916647-13916767 110 6.93e-04 AGTTGATAGT TTAGTTTT AAG chr3R:30177675-30177795 60 6.93e-04 TAAAATACTT TTAGTTTT GAAAATACAG chr3L:22466056-22466176 96 6.93e-04 TTTCTCGGCC TTTCTTGT GTCGGTTCCA chr3R:23061255-23061375 11 8.12e-04 TACGATCGGT TTTTGTGT TTTCAGCTGG chr2R:11749594-11749714 11 8.12e-04 TAAGAGCATG TTTGTTAT TTTGGACTAA chr3R:10049068-10049188 13 8.12e-04 AATCGAATAA TTTGTTAT ATAGAACGAT chr2L:4332068-4332188 19 8.65e-04 CTGAAACCGA GTTTTTTT AACAGCCCCC chr3L:1298537-1298657 107 9.20e-04 AAGAGAGATT GTTGTTTT CGAAAT chrX:17149759-17149879 58 1.22e-03 AACTGATTGC TTCTGTTT TCCCAACAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21634857-21634977 8.3e-05 92_[+4]_20 chrX:12672761-12672881 8.3e-05 10_[+4]_102 chr3R:16210861-16210981 8.3e-05 6_[+4]_106 chr3L:9551316-9551436 8.3e-05 63_[+4]_49 chr3L:7134966-7135086 8.3e-05 110_[+4]_2 chrX:7290973-7291093 8.3e-05 34_[+4]_78 chr3L:539910-540030 8.3e-05 77_[+4]_35 chr3R:11865289-11865409 8.3e-05 23_[+4]_89 chrX:6730724-6730844 8.3e-05 111_[+4]_1 chr2R:10474740-10474860 8.3e-05 13_[+4]_99 chr3L:9377909-9378029 8.3e-05 65_[+4]_47 chr3L:6155248-6155368 8.3e-05 45_[+4]_67 chr3L:12615204-12615324 8.3e-05 23_[+4]_89 chr3L:6447840-6447960 8.3e-05 67_[+4]_45 chr3L:5943680-5943800 8.3e-05 69_[+4]_43 chr2L:19144289-19144409 8.3e-05 87_[+4]_25 chr3R:30005476-30005596 8.3e-05 57_[+4]_55 chr3R:21938653-21938773 8.3e-05 104_[+4]_8 chrX:5769009-5769129 8.3e-05 25_[+4]_87 chr3R:30289460-30289580 8.3e-05 83_[+4]_29 chr2L:16562496-16562616 8.3e-05 48_[+4]_64 chr3L:18080115-18080235 8.3e-05 105_[+4]_7 chr3L:11136501-11136621 8.3e-05 8_[+4]_104 chr3L:10534021-10534141 8.3e-05 107_[+4]_5 chrX:7980913-7981033 8.3e-05 99_[+4]_13 chr3R:9381090-9381210 8.3e-05 63_[+4]_49 chr3R:18146805-18146925 8.3e-05 34_[+4]_78 chr3R:10592963-10593083 8.3e-05 28_[+4]_84 chrX:7973430-7973550 8.3e-05 42_[+4]_70 chr3R:26543588-26543708 8.3e-05 91_[+4]_21 chr3R:24004090-24004210 8.3e-05 54_[+4]_58 chr3L:12484802-12484922 8.3e-05 34_[+4]_78 chr2L:5372717-5372837 0.00014 60_[+4]_52 chrX:16723733-16723853 0.00014 100_[+4]_12 chr2L:11069707-11069827 0.00014 80_[+4]_32 chr2R:17136202-17136322 0.00014 111_[+4]_1 chr2R:17266169-17266289 0.00014 92_[+4]_20 chr2L:4375216-4375336 0.00014 65_[+4]_47 chr3R:17088201-17088321 0.00014 11_[+4]_101 chr2L:168427-168547 0.00014 69_[+4]_43 chrX:17726091-17726211 0.00014 36_[+4]_76 chr2R:20580823-20580943 0.00014 86_[+4]_26 chrX:13879590-13879710 0.00014 46_[+4]_66 chr2R:21531933-21532053 0.00014 43_[+4]_69 chr3R:13716220-13716340 0.00014 43_[+4]_69 chr2R:18879219-18879339 0.00014 9_[+4]_103 chr3R:24234894-24235014 0.00014 106_[+4]_6 chr2L:6036863-6036983 0.00024 2_[+4]_110 chr2L:18484685-18484805 0.00024 61_[+4]_51 chr2R:23637812-23637932 0.00024 1_[+4]_111 chr3L:2873202-2873322 0.00024 112_[+4] chr2L:5493974-5494094 0.00024 11_[+4]_101 chrX:6708194-6708314 0.00024 97_[+4]_15 chr3R:27069322-27069442 0.00024 84_[+4]_28 chr3L:3304128-3304248 0.00024 60_[+4]_52 chr2L:8741161-8741281 0.00024 4_[+4]_108 chr2R:15063753-15063873 0.00024 54_[+4]_58 chr3L:8358261-8358381 0.00024 85_[+4]_27 chrX:13116639-13116759 0.00024 6_[+4]_106 chr2R:10156245-10156365 0.00024 112_[+4] chr3L:15220479-15220599 0.0003 46_[+4]_66 chr3L:19793042-19793162 0.0003 67_[+4]_45 chr3L:13387780-13387900 0.0003 39_[+4]_73 chrX:5051198-5051318 0.0003 69_[+4]_43 chr2R:8995119-8995239 0.0003 78_[+4]_34 chrX:8176401-8176521 0.0003 43_[+4]_69 chr2L:7226737-7226857 0.0003 91_[+4]_21 chr3L:12484603-12484723 0.0003 61_[+4]_51 chr3L:21892813-21892933 0.00033 101_[+4]_11 chr3R:26534886-26535006 0.00033 68_[+4]_44 chr3L:2817971-2818091 0.0005 29_[+4]_83 chrX:12890430-12890550 0.0005 112_[+4] chr2L:20916906-20917026 0.0005 110_[+4]_2 chr2L:8420439-8420559 0.0005 5_[+4]_107 chr2L:11014835-11014955 0.0005 92_[+4]_20 chr3R:30014027-30014147 0.0005 51_[+4]_61 chr2R:9498794-9498914 0.0005 11_[+4]_101 chr3R:29279727-29279847 0.00057 100_[+4]_12 chr2L:2484291-2484411 0.00057 29_[+4]_83 chr2R:22596940-22597060 0.00057 76_[+4]_36 chr3R:13916647-13916767 0.00069 109_[+4]_3 chr3R:30177675-30177795 0.00069 59_[+4]_53 chr3L:22466056-22466176 0.00069 95_[+4]_17 chr3R:23061255-23061375 0.00081 10_[+4]_102 chr2R:11749594-11749714 0.00081 10_[+4]_102 chr3R:10049068-10049188 0.00081 12_[+4]_100 chr2L:4332068-4332188 0.00086 18_[+4]_94 chr3L:1298537-1298657 0.00092 106_[+4]_6 chrX:17149759-17149879 0.0012 57_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=89 chr3R:21634857-21634977 ( 93) TTTTTTTT 1 chrX:12672761-12672881 ( 11) TTTTTTTT 1 chr3R:16210861-16210981 ( 7) TTTTTTTT 1 chr3L:9551316-9551436 ( 64) TTTTTTTT 1 chr3L:7134966-7135086 ( 111) TTTTTTTT 1 chrX:7290973-7291093 ( 35) TTTTTTTT 1 chr3L:539910-540030 ( 78) TTTTTTTT 1 chr3R:11865289-11865409 ( 24) TTTTTTTT 1 chrX:6730724-6730844 ( 112) TTTTTTTT 1 chr2R:10474740-10474860 ( 14) TTTTTTTT 1 chr3L:9377909-9378029 ( 66) TTTTTTTT 1 chr3L:6155248-6155368 ( 46) TTTTTTTT 1 chr3L:12615204-12615324 ( 24) TTTTTTTT 1 chr3L:6447840-6447960 ( 68) TTTTTTTT 1 chr3L:5943680-5943800 ( 70) TTTTTTTT 1 chr2L:19144289-19144409 ( 88) TTTTTTTT 1 chr3R:30005476-30005596 ( 58) TTTTTTTT 1 chr3R:21938653-21938773 ( 105) TTTTTTTT 1 chrX:5769009-5769129 ( 26) TTTTTTTT 1 chr3R:30289460-30289580 ( 84) TTTTTTTT 1 chr2L:16562496-16562616 ( 49) TTTTTTTT 1 chr3L:18080115-18080235 ( 106) TTTTTTTT 1 chr3L:11136501-11136621 ( 9) TTTTTTTT 1 chr3L:10534021-10534141 ( 108) TTTTTTTT 1 chrX:7980913-7981033 ( 100) TTTTTTTT 1 chr3R:9381090-9381210 ( 64) TTTTTTTT 1 chr3R:18146805-18146925 ( 35) TTTTTTTT 1 chr3R:10592963-10593083 ( 29) TTTTTTTT 1 chrX:7973430-7973550 ( 43) TTTTTTTT 1 chr3R:26543588-26543708 ( 92) TTTTTTTT 1 chr3R:24004090-24004210 ( 55) TTTTTTTT 1 chr3L:12484802-12484922 ( 35) TTTTTTTT 1 chr2L:5372717-5372837 ( 61) TTTGTTTT 1 chrX:16723733-16723853 ( 101) TTTGTTTT 1 chr2L:11069707-11069827 ( 81) TTTGTTTT 1 chr2R:17136202-17136322 ( 112) TTTGTTTT 1 chr2R:17266169-17266289 ( 93) TTTGTTTT 1 chr2L:4375216-4375336 ( 66) TTTGTTTT 1 chr3R:17088201-17088321 ( 12) TTTGTTTT 1 chr2L:168427-168547 ( 70) TTTGTTTT 1 chrX:17726091-17726211 ( 37) TTTGTTTT 1 chr2R:20580823-20580943 ( 87) TTTGTTTT 1 chrX:13879590-13879710 ( 47) TTTGTTTT 1 chr2R:21531933-21532053 ( 44) TTTGTTTT 1 chr3R:13716220-13716340 ( 44) TTTGTTTT 1 chr2R:18879219-18879339 ( 10) TTTGTTTT 1 chr3R:24234894-24235014 ( 107) TTTGTTTT 1 chr2L:6036863-6036983 ( 3) TTTCTTTT 1 chr2L:18484685-18484805 ( 62) TTTCTTTT 1 chr2R:23637812-23637932 ( 2) TTTTTTGT 1 chr3L:2873202-2873322 ( 113) TTTTTTGT 1 chr2L:5493974-5494094 ( 12) TTTCTTTT 1 chrX:6708194-6708314 ( 98) TTTCTTTT 1 chr3R:27069322-27069442 ( 85) TTTCTTTT 1 chr3L:3304128-3304248 ( 61) TTTCTTTT 1 chr2L:8741161-8741281 ( 5) TTTTTTGT 1 chr2R:15063753-15063873 ( 55) TTTCTTTT 1 chr3L:8358261-8358381 ( 86) TTTTTTGT 1 chrX:13116639-13116759 ( 7) TTTTTTGT 1 chr2R:10156245-10156365 ( 113) TTTTTTGT 1 chr3L:15220479-15220599 ( 47) TTTTGTTT 1 chr3L:19793042-19793162 ( 68) TTTTGTTT 1 chr3L:13387780-13387900 ( 40) TTTTGTTT 1 chrX:5051198-5051318 ( 70) TTTTGTTT 1 chr2R:8995119-8995239 ( 79) TTTTGTTT 1 chrX:8176401-8176521 ( 44) TTTTGTTT 1 chr2L:7226737-7226857 ( 92) TTTTGTTT 1 chr3L:12484603-12484723 ( 62) TTTTGTTT 1 chr3L:21892813-21892933 ( 102) TTTGTTGT 1 chr3R:26534886-26535006 ( 69) TTTGTTGT 1 chr3L:2817971-2818091 ( 30) TTATTTTT 1 chrX:12890430-12890550 ( 113) TTATTTTT 1 chr2L:20916906-20917026 ( 111) TTCTTTTT 1 chr2L:8420439-8420559 ( 6) TTCTTTTT 1 chr2L:11014835-11014955 ( 93) TTATTTTT 1 chr3R:30014027-30014147 ( 52) TTCTTTTT 1 chr2R:9498794-9498914 ( 12) TTATTTTT 1 chr3R:29279727-29279847 ( 101) TTTTTTAT 1 chr2L:2484291-2484411 ( 30) TTTTTTAT 1 chr2R:22596940-22597060 ( 77) TTTTTTAT 1 chr3R:13916647-13916767 ( 110) TTAGTTTT 1 chr3R:30177675-30177795 ( 60) TTAGTTTT 1 chr3L:22466056-22466176 ( 96) TTTCTTGT 1 chr3R:23061255-23061375 ( 11) TTTTGTGT 1 chr2R:11749594-11749714 ( 11) TTTGTTAT 1 chr3R:10049068-10049188 ( 13) TTTGTTAT 1 chr2L:4332068-4332188 ( 19) GTTTTTTT 1 chr3L:1298537-1298657 ( 107) GTTGTTTT 1 chrX:17149759-17149879 ( 58) TTCTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.34412 E= 5.4e-013 -1312 -1312 -313 166 -1312 -1312 -1312 169 -213 -214 -1312 152 -1312 -114 32 110 -1312 -1312 -81 152 -1312 -1312 -1312 169 -239 -1312 -81 143 -1312 -1312 -1312 169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 5.4e-013 0.000000 0.000000 0.022472 0.977528 0.000000 0.000000 0.000000 1.000000 0.067416 0.044944 0.000000 0.887640 0.000000 0.089888 0.247191 0.662921 0.000000 0.000000 0.112360 0.887640 0.000000 0.000000 0.000000 1.000000 0.056180 0.000000 0.112360 0.831461 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-4 regular expression -------------------------------------------------------------------------------- TTT[TG]TTTT -------------------------------------------------------------------------------- Time 26.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAAGTCC MEME-5 width = 8 sites = 13 llr = 138 E-value = 8.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a9a:::: pos.-specific C a:::::8a probability G ::1:a:2: matrix T :::::a:: bits 2.3 * * * 2.1 * * * 1.9 ** ** * 1.6 ** ***** Relative 1.4 ******** Entropy 1.2 ******** (15.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17149759-17149879 32 1.21e-05 CACTCCAGAG CAAAGTCC ACAATAACAA chrX:12890430-12890550 18 1.21e-05 CGCTGGCGGG CAAAGTCC ACCAAGTGAT chrX:9139255-9139375 62 1.21e-05 CCGATAAATC CAAAGTCC GGCAGCAGCT chr2L:7207787-7207907 63 1.21e-05 TGGCACTGAC CAAAGTCC AGCACCTTAA chrX:20166801-20166921 80 1.21e-05 GGGTTCGGTT CAAAGTCC GAACACCGGT chr2R:10474740-10474860 44 1.21e-05 CACGAGGGGC CAAAGTCC ACGAGATATT chrX:8592769-8592889 99 1.21e-05 CGCCAGCATA CAAAGTCC AATCAGAATA chr3L:41792-41912 106 1.21e-05 GTGAGCGGTT CAAAGTCC ACAATTT chr3R:9389140-9389260 44 1.21e-05 ATTACAAAGT CAAAGTCC AATGAAGAAA chr2R:6148134-6148254 23 1.21e-05 GGTCCGATGC CAAAGTCC GCCAgaccct chrX:16633651-16633771 55 2.42e-05 TAGGGGAGTC CAAAGTGC CAAAGTAGTG chr2L:18457079-18457199 67 2.42e-05 CCAACAACAA CAAAGtgc aaattgcact chr2R:9714256-9714376 80 3.23e-05 CACCACCATC CAGAGTCC ATGGTCTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17149759-17149879 1.2e-05 31_[+5]_81 chrX:12890430-12890550 1.2e-05 17_[+5]_95 chrX:9139255-9139375 1.2e-05 61_[+5]_51 chr2L:7207787-7207907 1.2e-05 62_[+5]_50 chrX:20166801-20166921 1.2e-05 79_[+5]_33 chr2R:10474740-10474860 1.2e-05 43_[+5]_69 chrX:8592769-8592889 1.2e-05 98_[+5]_14 chr3L:41792-41912 1.2e-05 105_[+5]_7 chr3R:9389140-9389260 1.2e-05 43_[+5]_69 chr2R:6148134-6148254 1.2e-05 22_[+5]_90 chrX:16633651-16633771 2.4e-05 54_[+5]_58 chr2L:18457079-18457199 2.4e-05 66_[+5]_46 chr2R:9714256-9714376 3.2e-05 79_[+5]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAGTCC width=8 seqs=13 chrX:17149759-17149879 ( 32) CAAAGTCC 1 chrX:12890430-12890550 ( 18) CAAAGTCC 1 chrX:9139255-9139375 ( 62) CAAAGTCC 1 chr2L:7207787-7207907 ( 63) CAAAGTCC 1 chrX:20166801-20166921 ( 80) CAAAGTCC 1 chr2R:10474740-10474860 ( 44) CAAAGTCC 1 chrX:8592769-8592889 ( 99) CAAAGTCC 1 chr3L:41792-41912 ( 106) CAAAGTCC 1 chr3R:9389140-9389260 ( 44) CAAAGTCC 1 chr2R:6148134-6148254 ( 23) CAAAGTCC 1 chrX:16633651-16633771 ( 55) CAAAGTGC 1 chr2L:18457079-18457199 ( 67) CAAAGTGC 1 chr2R:9714256-9714376 ( 80) CAGAGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 8.0e+000 -1035 233 -1035 -1035 176 -1035 -1035 -1035 164 -1035 -136 -1035 176 -1035 -1035 -1035 -1035 -1035 234 -1035 -1035 -1035 -1035 169 -1035 209 -36 -1035 -1035 233 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 8.0e+000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.923077 0.000000 0.076923 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-5 regular expression -------------------------------------------------------------------------------- CAAAGTCC -------------------------------------------------------------------------------- Time 32.23 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10508131-10508251 3.85e-04 69_[+1(5.16e-06)]_19_[+2(5.67e-06)]_\ 16 chr2L:4331860-4331980 8.03e-01 120 chrX:6709777-6709897 1.78e-02 12_[+1(6.20e-05)]_100 chr2R:13183903-13184023 3.21e-04 15_[+2(5.67e-06)]_19_[+1(5.16e-06)]_\ 70 chrX:13411026-13411146 1.09e-01 56_[+1(5.16e-06)]_56 chr2L:4905498-4905618 4.84e-02 120 chr3R:8250324-8250444 2.05e-02 35_[+2(5.67e-06)]_77 chr3R:14259954-14260074 3.30e-02 50_[+2(5.67e-06)]_62 chrX:4647797-4647917 7.56e-03 44_[+2(2.26e-05)]_68 chr2R:12521323-12521443 1.36e-02 57_[+1(5.16e-06)]_55 chr3L:22466056-22466176 1.03e-02 72_[+2(4.60e-05)]_40 chr2L:4332068-4332188 3.60e-01 120 chr3R:24234894-24235014 9.77e-03 85_[+1(1.84e-05)]_27 chr2L:3417044-3417164 3.63e-04 14_[+1(6.20e-05)]_24_[+2(5.67e-06)]_\ 66 chrX:1375383-1375503 1.42e-01 62_[+1(1.84e-05)]_50 chr3L:12484603-12484723 3.08e-02 53_[+1(2.65e-05)]_59 chrX:15709645-15709765 1.06e-02 45_[+1(5.16e-06)]_67 chrX:22526913-22527033 3.79e-02 120 chr3L:14212380-14212500 6.55e-03 67_[+1(5.16e-06)]_45 chr2R:24138204-24138324 1.78e-02 62_[+1(5.16e-06)]_50 chr3R:22094056-22094176 5.63e-03 8_[+2(2.26e-05)]_104 chr2L:12066739-12066859 1.03e-01 120 chr2L:7226737-7226857 2.46e-03 32_[+1(5.16e-06)]_19_[+1(5.16e-06)]_\ 53 chrX:13090811-13090931 1.25e-02 39_[+1(1.84e-05)]_73 chr3R:28345432-28345552 8.77e-04 31_[+2(5.67e-06)]_64_[+1(4.92e-05)]_\ 9 chrX:1460654-1460774 1.79e-02 34_[+2(5.67e-06)]_78 chr2R:10156245-10156365 1.05e-04 35_[+2(5.67e-06)]_77 chr2L:8740910-8741030 9.80e-03 104_[+2(2.26e-05)]_8 chr3R:30180108-30180228 1.60e-03 50_[+1(5.16e-06)]_62 chr2R:15225078-15225198 5.39e-01 120 chr2R:15811950-15812070 1.71e-04 59_[+1(1.03e-05)]_29_[+3(5.74e-05)]_\ 16 chr2L:7132700-7132820 2.18e-01 120 chrX:13091015-13091135 1.97e-01 120 chrX:15709846-15709966 1.51e-02 41_[+2(6.75e-05)]_71 chr2R:7669015-7669135 3.99e-02 67_[+1(5.16e-06)]_45 chr2L:7063945-7064065 6.07e-03 120 chrX:15080051-15080171 5.73e-03 34_[+1(5.43e-05)]_78 chr3L:6972590-6972710 7.76e-01 120 chrX:17422137-17422257 2.94e-03 46_[+2(3.11e-05)]_66 chrX:9600875-9600995 9.86e-03 63_[+1(1.84e-05)]_49 chrX:7995357-7995477 1.23e-03 28_[+2(2.26e-05)]_9_[+1(7.24e-05)]_\ 67 chr3R:9933502-9933622 4.07e-03 62_[+3(9.59e-05)]_50 chr3L:12484802-12484922 3.87e-02 33_[+4(8.31e-05)]_79 chrX:18565949-18566069 1.40e-01 120 chr3R:10177083-10177203 8.96e-01 120 chr3R:30177675-30177795 2.27e-01 120 chr3R:24004090-24004210 8.98e-02 53_[+4(8.31e-05)]_59 chr2R:13963638-13963758 6.75e-02 68_[+2(3.11e-05)]_44 chr3R:10049068-10049188 1.30e-01 120 chr2R:6148134-6148254 7.27e-02 22_[+5(1.21e-05)]_90 chr2L:6024514-6024634 4.39e-03 81_[+1(5.16e-06)]_31 chr3R:5111926-5112046 1.68e-02 22_[+3(9.59e-05)]_13_[+3(5.74e-05)]_\ 69 chr3R:16135742-16135862 3.70e-04 21_[+1(7.24e-05)]_14_[+2(5.87e-05)]_\ 69 chr2L:1500431-1500551 2.93e-03 68_[+1(5.16e-06)]_44 chr2R:8595941-8596061 9.25e-01 120 chr2R:18879219-18879339 1.64e-02 95_[+3(5.74e-05)]_17 chr3R:26543588-26543708 1.09e-01 91_[+4(8.31e-05)]_6_[+4(8.31e-05)]_\ 7 chrX:7973430-7973550 3.02e-01 40_[+4(8.31e-05)]_72 chr2R:7472415-7472535 2.39e-01 120 chr3R:10592963-10593083 5.63e-03 27_[+4(8.31e-05)]_48_[+1(6.55e-05)]_\ 29 chr3R:13716220-13716340 2.30e-01 120 chrX:8176401-8176521 1.15e-02 97_[+1(6.20e-05)]_15 chr2R:21531933-21532053 4.30e-01 120 chr3R:9389140-9389260 2.69e-03 43_[+5(1.21e-05)]_69 chr2R:9498794-9498914 9.47e-02 120 chr3L:485046-485166 4.14e-01 120 chr3L:19556982-19557102 9.18e-02 75_[+1(5.43e-05)]_37 chr3R:18146805-18146925 3.66e-02 34_[+4(8.31e-05)]_78 chr3R:9381090-9381210 3.17e-01 62_[+4(8.31e-05)]_50 chr3L:16854384-16854504 1.37e-01 120 chr3R:30014027-30014147 6.86e-02 120 chr3L:4336694-4336814 6.73e-01 120 chr2L:2724892-2725012 1.21e-01 120 chr2L:11014835-11014955 4.79e-01 120 chrX:7980913-7981033 4.01e-01 55_[+4(8.31e-05)]_36_[+4(8.31e-05)]_\ 13 chr3L:1298537-1298657 1.00e-03 54_[+1(1.84e-05)]_14_[+1(5.16e-06)]_\ 36 chr2L:2802662-2802782 8.99e-01 120 chrX:13879590-13879710 2.37e-02 120 chr3R:26725349-26725469 1.02e-03 82_[+2(5.87e-05)]_16_[+1(2.65e-05)]_\ 6 chr3R:10829907-10830027 8.39e-01 120 chrX:9344299-9344419 1.02e-01 30_[+3(5.74e-05)]_82 chr3L:10534021-10534141 4.07e-02 69_[+4(8.31e-05)]_30_[+4(8.31e-05)]_\ 5 chrX:8159126-8159246 6.43e-01 120 chrX:13116639-13116759 4.98e-02 120 chr3L:11136501-11136621 3.76e-01 7_[+4(8.31e-05)]_44_[+4(8.31e-05)]_\ 44_[+4(8.31e-05)]_1 chr2R:8995119-8995239 5.97e-01 120 chr3L:2567162-2567282 1.79e-02 29_[+2(2.26e-05)]_83 chr3L:18080115-18080235 1.73e-03 18_[+2(3.47e-05)]_78_[+4(8.31e-05)]_\ 8 chr3R:26004540-26004660 6.82e-02 13_[+3(5.74e-05)]_21_[+3(5.74e-05)]_\ 70 chr3L:8358261-8358381 2.13e-01 120 chr3L:12455186-12455306 9.16e-01 120 chr3L:16842161-16842281 5.05e-01 120 chr2R:22596940-22597060 3.74e-01 120 chr2R:9714256-9714376 1.11e-01 79_[+5(3.23e-05)]_33 chr2L:16562496-16562616 1.29e-01 48_[+4(8.31e-05)]_[+4(8.31e-05)]_56 chr2R:15063753-15063873 1.36e-01 120 chr3R:11616245-11616365 5.93e-01 120 chrX:13644788-13644908 1.40e-01 120 chr2R:20580823-20580943 9.32e-02 120 chr2R:23862705-23862825 7.38e-02 110_[+2(5.67e-06)]_2 chr3R:30357223-30357343 6.65e-01 120 chrX:17726091-17726211 4.77e-01 120 chr3R:17087994-17088114 3.55e-02 120 chr2L:168427-168547 2.24e-02 120 chr2R:7676417-7676537 3.16e-02 62_[+2(2.26e-05)]_50 chrX:17806442-17806562 2.19e-01 88_[+3(5.74e-05)]_24 chr3R:30289460-30289580 1.64e-01 82_[+4(8.31e-05)]_30 chrX:14098373-14098493 1.78e-01 57_[+3(5.74e-05)]_55 chr3L:14350949-14351069 6.62e-01 120 chr3L:18889403-18889523 3.75e-02 8_[+1(1.03e-05)]_104 chrX:17488540-17488660 2.65e-01 3_[+3(5.74e-05)]_109 chr2R:15046162-15046282 2.94e-01 120 chr3L:9462968-9463088 1.34e-02 105_[+1(6.20e-05)]_7 chrX:5769009-5769129 1.79e-01 25_[+4(8.31e-05)]_87 chr3R:25596781-25596901 1.54e-01 49_[+3(5.74e-05)]_44_[+3(9.59e-05)]_\ 11 chr3R:27283903-27284023 7.30e-01 120 chr2R:15047016-15047136 8.67e-01 120 chr3L:41792-41912 2.66e-02 105_[+5(1.21e-05)]_7 chr2L:2484291-2484411 4.44e-01 120 chr2R:22998626-22998746 4.89e-01 120 chr2R:11180835-11180955 1.57e-03 39_[+3(9.59e-05)]_20_[+1(1.84e-05)]_\ 45 chr2R:7370394-7370514 4.82e-03 16_[+1(6.20e-05)]_96 chr3R:26534886-26535006 9.04e-03 120 chr3R:20556837-20556957 2.45e-01 120 chrX:8592769-8592889 1.99e-05 58_[+2(4.60e-05)]_11_[+3(5.74e-05)]_\ 13_[+5(1.21e-05)]_14 chr2L:13884764-13884884 3.86e-01 120 chr2R:18746907-18747027 8.88e-01 120 chr3R:21938653-21938773 7.96e-02 103_[+4(8.31e-05)]_9 chr2L:8741161-8741281 3.20e-01 120 chr3R:30005476-30005596 1.48e-01 57_[+4(8.31e-05)]_55 chr3L:3106288-3106408 5.62e-01 120 chr2L:19144289-19144409 8.18e-02 84_[+4(8.31e-05)]_28 chr3L:20592680-20592800 3.56e-01 120 chr2L:12543986-12544106 2.55e-01 10_[+3(5.74e-05)]_102 chr3L:3338244-3338364 8.25e-01 120 chr2L:3352003-3352123 4.94e-01 120 chr3L:5943680-5943800 2.10e-01 58_[+4(8.31e-05)]_3_[+4(8.31e-05)]_\ 43 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1.04e-01 27_[+5(6.12e-05)]_19_[+5(2.42e-05)]_\ 58 chr3L:16173983-16174103 3.47e-02 16_[+3(5.74e-05)]_96 chrX:12672761-12672881 2.86e-01 8_[+4(8.31e-05)]_104 chr3R:6954626-6954746 5.09e-01 120 chr3R:29570398-29570518 7.62e-02 120 chr3R:21634857-21634977 4.25e-01 63_[+4(8.31e-05)]_21_[+4(8.31e-05)]_\ 20 chr2R:11749594-11749714 6.85e-01 120 chr3R:23061255-23061375 4.35e-01 120 chr2L:5372717-5372837 2.13e-01 120 chr3R:5622162-5622282 6.37e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************