******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6792.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:740019-740139 1.0000 120 chr3L:6269076-6269196 1.0000 120 chrX:14897726-14897846 1.0000 120 chr2L:4361558-4361678 1.0000 120 chrX:17113430-17113550 1.0000 120 chr3L:20953397-20953517 1.0000 120 chr2L:5429248-5429368 1.0000 120 chrX:2358335-2358455 1.0000 120 chr3L:6270424-6270544 1.0000 120 chr2R:21569783-21569903 1.0000 120 chrX:4175931-4176051 1.0000 120 chrX:8255044-8255164 1.0000 120 chr3L:12915643-12915763 1.0000 120 chr3R:14498192-14498312 1.0000 120 chr3R:29199886-29200006 1.0000 120 chr3R:29506740-29506860 1.0000 120 chrX:15543677-15543797 1.0000 120 chr2L:11399641-11399761 1.0000 120 chr3L:15258489-15258609 1.0000 120 chr2R:18923619-18923739 1.0000 120 chr3R:30076226-30076346 1.0000 120 chr3R:9913589-9913709 1.0000 120 chrX:17518407-17518527 1.0000 120 chrX:7491042-7491162 1.0000 120 chr3R:23148494-23148614 1.0000 120 chr3R:31679995-31680115 1.0000 120 chr3R:31991908-31992028 1.0000 120 chr3L:12058555-12058675 1.0000 120 chrX:9787518-9787638 1.0000 120 chr2R:18271160-18271280 1.0000 120 chr2L:7619399-7619519 1.0000 120 chr3L:18276043-18276163 1.0000 120 chrX:3055915-3056035 1.0000 120 chr2L:11871086-11871206 1.0000 120 chrX:779477-779597 1.0000 120 chr3L:1457352-1457472 1.0000 120 chr3L:14350264-14350384 1.0000 120 chr2R:10600485-10600605 1.0000 120 chr3L:1031039-1031159 1.0000 120 chr3L:4619945-4620065 1.0000 120 chr3R:26429741-26429861 1.0000 120 chr2L:15275933-15276053 1.0000 120 chr2L:18341093-18341213 1.0000 120 chr3L:21080579-21080699 1.0000 120 chr3L:15174220-15174340 1.0000 120 chr2L:6508798-6508918 1.0000 120 chrX:6022267-6022387 1.0000 120 chrX:7179420-7179540 1.0000 120 chrX:22846522-22846642 1.0000 120 chr2L:3341706-3341826 1.0000 120 chr3L:6285555-6285675 1.0000 120 chr3R:20286150-20286270 1.0000 120 chrX:6573915-6574035 1.0000 120 chr2L:17750245-17750365 1.0000 120 chrX:342594-342714 1.0000 120 chr2L:7573334-7573454 1.0000 120 chrX:12000335-12000455 1.0000 120 chrX:6528654-6528774 1.0000 120 chr3R:8968945-8969065 1.0000 120 chr3R:15588697-15588817 1.0000 120 chr3R:8038001-8038121 1.0000 120 chr3R:8847408-8847528 1.0000 120 chr3R:31225149-31225269 1.0000 120 chr3L:6471991-6472111 1.0000 120 chr3R:17825903-17826023 1.0000 120 chr2R:23567397-23567517 1.0000 120 chr2L:18146811-18146931 1.0000 120 chr3L:8157189-8157309 1.0000 120 chr2R:12646915-12647035 1.0000 120 chrX:17571071-17571191 1.0000 120 chr2L:14248038-14248158 1.0000 120 chr3L:818520-818640 1.0000 120 chr2L:11395780-11395900 1.0000 120 chrX:6059287-6059407 1.0000 120 chr2R:24955699-24955819 1.0000 120 chrX:19162376-19162496 1.0000 120 chr2R:15745189-15745309 1.0000 120 chr3R:13934760-13934880 1.0000 120 chr3L:13107383-13107503 1.0000 120 chr2L:1887885-1888005 1.0000 120 chr2L:6472487-6472607 1.0000 120 chr3R:14711552-14711672 1.0000 120 chr2R:23299470-23299590 1.0000 120 chrX:5044588-5044708 1.0000 120 chrX:5926865-5926985 1.0000 120 chrX:9468467-9468587 1.0000 120 chr3L:10709216-10709336 1.0000 120 chr2R:20206680-20206800 1.0000 120 chr2L:382925-383045 1.0000 120 chr3R:28633869-28633989 1.0000 120 chr2L:11222231-11222351 1.0000 120 chrX:8891102-8891222 1.0000 120 chr3R:27140048-27140168 1.0000 120 chrX:2788785-2788905 1.0000 120 chr2R:20136855-20136975 1.0000 120 chr3R:23496628-23496748 1.0000 120 chrX:10104599-10104719 1.0000 120 chr3L:166656-166776 1.0000 120 chr3R:26892880-26893000 1.0000 120 chrX:2455516-2455636 1.0000 120 chr2L:18645624-18645744 1.0000 120 chr3L:21738575-21738695 1.0000 120 chr2L:16406675-16406795 1.0000 120 chr2L:18566794-18566914 1.0000 120 chr3L:785843-785963 1.0000 120 chrX:4970030-4970150 1.0000 120 chrX:768034-768154 1.0000 120 chr3R:14048916-14049036 1.0000 120 chr3L:4545809-4545929 1.0000 120 chrX:7526222-7526342 1.0000 120 chr2R:18894894-18895014 1.0000 120 chr3R:13793419-13793539 1.0000 120 chr3L:4721982-4722102 1.0000 120 chrX:5786649-5786769 1.0000 120 chrX:13245866-13245986 1.0000 120 chr2L:3781543-3781663 1.0000 120 chrX:18256570-18256690 1.0000 120 chr3R:23486908-23487028 1.0000 120 chrX:8244430-8244550 1.0000 120 chr3R:9966206-9966326 1.0000 120 chr2L:10791469-10791589 1.0000 120 chr2R:16812874-16812994 1.0000 120 chr2L:7973965-7974085 1.0000 120 chr2R:19985162-19985282 1.0000 120 chr2L:21847362-21847482 1.0000 120 chr2L:15304552-15304672 1.0000 120 chr2L:18372209-18372329 1.0000 120 chr3R:22628053-22628173 1.0000 120 chrX:9892976-9893096 1.0000 120 chr2R:10237767-10237887 1.0000 120 chr3R:22195839-22195959 1.0000 120 chr2R:11515863-11515983 1.0000 120 chrX:3722361-3722481 1.0000 120 chrX:3060219-3060339 1.0000 120 chr3R:9963214-9963334 1.0000 120 chr2L:4348694-4348814 1.0000 120 chr2L:10616085-10616205 1.0000 120 chr3L:18198892-18199012 1.0000 120 chr3L:761840-761960 1.0000 120 chr2L:6991229-6991349 1.0000 120 chrX:3411972-3412092 1.0000 120 chr2R:20646229-20646349 1.0000 120 chr2R:16812230-16812350 1.0000 120 chr3R:14847338-14847458 1.0000 120 chr2R:19849233-19849353 1.0000 120 chr2R:22559573-22559693 1.0000 120 chrX:14074326-14074446 1.0000 120 chrX:12699221-12699341 1.0000 120 chr2L:18628314-18628434 1.0000 120 chr2R:9674761-9674881 1.0000 120 chrX:17879445-17879565 1.0000 120 chr3R:30501285-30501405 1.0000 120 chr2L:5249894-5250014 1.0000 120 chr3L:15209235-15209355 1.0000 120 chr3L:5863066-5863186 1.0000 120 chr3R:24614281-24614401 1.0000 120 chr3R:14765530-14765650 1.0000 120 chr2R:21569031-21569151 1.0000 120 chrX:7535006-7535126 1.0000 120 chrX:19964374-19964494 1.0000 120 chr2R:18891061-18891181 1.0000 120 chr3R:31762819-31762939 1.0000 120 chrX:22479472-22479592 1.0000 120 chr2L:7985022-7985142 1.0000 120 chrX:5897204-5897324 1.0000 120 chr2L:5290044-5290164 1.0000 120 chrX:19229994-19230114 1.0000 120 chrX:5026160-5026280 1.0000 120 chr3L:16204256-16204376 1.0000 120 chrX:12015139-12015259 1.0000 120 chr2R:11033745-11033865 1.0000 120 chr3R:13861959-13862079 1.0000 120 chr3R:30843201-30843321 1.0000 120 chr3L:6871429-6871549 1.0000 120 chr2L:6165897-6166017 1.0000 120 chr2R:18209836-18209956 1.0000 120 chr2L:20802341-20802461 1.0000 120 chr3L:3343431-3343551 1.0000 120 chr3R:30284044-30284164 1.0000 120 chr3R:23508461-23508581 1.0000 120 chr3R:8154082-8154202 1.0000 120 chr3R:9230324-9230444 1.0000 120 chr2L:675026-675146 1.0000 120 chr3L:15762947-15763067 1.0000 120 chr2L:5483202-5483322 1.0000 120 chr2L:14598399-14598519 1.0000 120 chr2R:8650577-8650697 1.0000 120 chr3L:1084485-1084605 1.0000 120 chrX:6077090-6077210 1.0000 120 chr2L:20371571-20371691 1.0000 120 chr3L:16024800-16024920 1.0000 120 chr3L:8459395-8459515 1.0000 120 chr3L:1388213-1388333 1.0000 120 chrX:5923287-5923407 1.0000 120 chr3L:8701790-8701910 1.0000 120 chr3R:27186288-27186408 1.0000 120 chr2L:4056897-4057017 1.0000 120 chrX:21074463-21074583 1.0000 120 chr3R:27224845-27224965 1.0000 120 chr3L:2471178-2471298 1.0000 120 chr2L:4211401-4211521 1.0000 120 chr2L:9829021-9829141 1.0000 120 chr3L:4836473-4836593 1.0000 120 chr3L:10697010-10697130 1.0000 120 chr2R:17836074-17836194 1.0000 120 chr3L:16211246-16211366 1.0000 120 chr3R:30800386-30800506 1.0000 120 chr3R:11947251-11947371 1.0000 120 chr3L:777406-777526 1.0000 120 chr3L:16482303-16482423 1.0000 120 chr3L:14463939-14464059 1.0000 120 chr3R:19924432-19924552 1.0000 120 chr2R:12732988-12733108 1.0000 120 chr2L:7503849-7503969 1.0000 120 chr2R:19969882-19970002 1.0000 120 chr3L:16286392-16286512 1.0000 120 chr2R:24896066-24896186 1.0000 120 chr2L:19162872-19162992 1.0000 120 chr2L:7611708-7611828 1.0000 120 chr3L:1683252-1683372 1.0000 120 chr2L:8361660-8361780 1.0000 120 chr2L:11306249-11306369 1.0000 120 chr2L:7420439-7420559 1.0000 120 chr2R:12012860-12012980 1.0000 120 chr2R:20162698-20162818 1.0000 120 chrX:4197629-4197749 1.0000 120 chrX:17237555-17237675 1.0000 120 chrX:19160033-19160153 1.0000 120 chr3R:10661231-10661351 1.0000 120 chr3R:4873907-4874027 1.0000 120 chrX:17490014-17490134 1.0000 120 chr2L:18648362-18648482 1.0000 120 chr3L:746506-746626 1.0000 120 chr3R:14449454-14449574 1.0000 120 chr2L:18352998-18353118 1.0000 120 chrX:10717979-10718099 1.0000 120 chr3R:14430403-14430523 1.0000 120 chr3R:25634007-25634127 1.0000 120 chr3R:15634270-15634390 1.0000 120 chr3R:22039608-22039728 1.0000 120 chr3L:6266497-6266617 1.0000 120 chr2L:7104724-7104844 1.0000 120 chrX:16966661-16966781 1.0000 120 chr2L:423275-423395 1.0000 120 chr3R:22185805-22185925 1.0000 120 chr3L:8027804-8027924 1.0000 120 chrX:13679753-13679873 1.0000 120 chr3L:6359365-6359485 1.0000 120 chr2R:6556970-6557090 1.0000 120 chr3L:734005-734125 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG6792/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6792.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.34 C 0.158 G 0.155 T 0.346 Background letter frequencies (from file dataset with add-one prior applied): A 0.34 C 0.158 G 0.155 T 0.346 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VTGCACTG MEME-1 width = 8 sites = 27 llr = 255 E-value = 4.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif VTGCACTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 41::a:3: pos.-specific C 31:a:a:1 probability G 3:a::::9 matrix T :8::::7: bits 2.7 ** * 2.4 ** * 2.1 ** * * 1.9 ** * * Relative 1.6 **** * Entropy 1.3 **** * (13.6 bits) 1.1 **** * 0.8 ***** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ATGCACTG consensus C A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20162698-20162818 6 3.86e-06 TTTCA CTGCACTG CTTAAATTCC chr2R:11033745-11033865 107 3.86e-06 TTATTGTGTG CTGCACTG ATTTCT chr3R:8847408-8847528 109 3.86e-06 ATTATGCGAA CTGCACTG TGGG chr3L:1388213-1388333 12 7.64e-06 CATCGTGATC GTGCACTG AAAGAAATGC chr2L:6991229-6991349 3 7.64e-06 AA GTGCACTG AGAGAAAAAT chrX:4970030-4970150 112 7.64e-06 ATTGTAAACT GTGCACTG C chr3R:8038001-8038121 19 7.64e-06 CGCAACAAAT GTGCACTG GGAGAAAAAT chrX:7491042-7491162 3 7.64e-06 TA GTGCACTG GAAAAAACTT chr3R:8154082-8154202 11 1.59e-05 CCCTCTATAA ATGCACTG GAAAGTTTCT chr2L:5249894-5250014 29 1.59e-05 CCTGGTCAGG ATGCACTG GCAGAAATTG chr3L:4721982-4722102 9 1.59e-05 GCGAAGAG ATGCACTG TGAAAAATTT chr2R:18271160-18271280 23 1.59e-05 TCGCGAAACT ATGCACTG CGCGAAATTA chr3L:8027804-8027924 16 1.97e-05 TTACATTGTT CTGCACAG CAATATGTAC chr3R:30284044-30284164 46 1.97e-05 AGGGTAGCGC CTGCACAG TGGTTGCAAA chr3R:27186288-27186408 5 2.52e-05 CACA CCGCACTG CATCCCATCC chr2L:5483202-5483322 3 3.51e-05 GG ATGCACAG TTAAAAAAAT chrX:17879445-17879565 58 3.51e-05 ATGCAATAAA ATGCACAG AATTACATTA chr3R:14711552-14711672 65 3.51e-05 CTCAGAAAAG ATGCACAG GAAAAGATGA chr2R:10600485-10600605 104 4.28e-05 CGCCGCTGAA ACGCACTG TATGGTCAG chr2R:18209836-18209956 105 4.67e-05 ATTTTTTTCA GTGCACTC ACGCACAC chr2L:1887885-1888005 69 4.84e-05 GGTGGGCTAG CTGCACCG CATCCTATTT chr3L:2471178-2471298 75 5.86e-05 TTGGAACTTC ATGCACTC TCATTGCAAT chr3L:6269076-6269196 24 5.86e-05 GCCAAAGCCA ATGCACTC CAAAAAAATA chr3R:9966206-9966326 13 6.41e-05 CCTTCGGTGA CAGCACTG AGAGAAATAT chr2L:7619399-7619519 95 7.72e-05 AAAGTCCACA CTGCACAC TTCTTGGATT chr2L:11399641-11399761 48 7.72e-05 ATTAATTATT GAGCACTG TTGTAAAGCA chrX:12015139-12015259 3 8.09e-05 CA ACGCACAG TGGAACCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20162698-20162818 3.9e-06 5_[+1]_107 chr2R:11033745-11033865 3.9e-06 106_[+1]_6 chr3R:8847408-8847528 3.9e-06 108_[+1]_4 chr3L:1388213-1388333 7.6e-06 11_[+1]_101 chr2L:6991229-6991349 7.6e-06 2_[+1]_110 chrX:4970030-4970150 7.6e-06 111_[+1]_1 chr3R:8038001-8038121 7.6e-06 18_[+1]_94 chrX:7491042-7491162 7.6e-06 2_[+1]_110 chr3R:8154082-8154202 1.6e-05 10_[+1]_102 chr2L:5249894-5250014 1.6e-05 28_[+1]_84 chr3L:4721982-4722102 1.6e-05 8_[+1]_104 chr2R:18271160-18271280 1.6e-05 22_[+1]_90 chr3L:8027804-8027924 2e-05 15_[+1]_97 chr3R:30284044-30284164 2e-05 45_[+1]_67 chr3R:27186288-27186408 2.5e-05 4_[+1]_108 chr2L:5483202-5483322 3.5e-05 2_[+1]_110 chrX:17879445-17879565 3.5e-05 57_[+1]_55 chr3R:14711552-14711672 3.5e-05 64_[+1]_48 chr2R:10600485-10600605 4.3e-05 103_[+1]_9 chr2R:18209836-18209956 4.7e-05 104_[+1]_8 chr2L:1887885-1888005 4.8e-05 68_[+1]_44 chr3L:2471178-2471298 5.9e-05 74_[+1]_38 chr3L:6269076-6269196 5.9e-05 23_[+1]_89 chr3R:9966206-9966326 6.4e-05 12_[+1]_100 chr2L:7619399-7619519 7.7e-05 94_[+1]_18 chr2L:11399641-11399761 7.7e-05 47_[+1]_65 chrX:12015139-12015259 8.1e-05 2_[+1]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VTGCACTG width=8 seqs=27 chr2R:20162698-20162818 ( 6) CTGCACTG 1 chr2R:11033745-11033865 ( 107) CTGCACTG 1 chr3R:8847408-8847528 ( 109) CTGCACTG 1 chr3L:1388213-1388333 ( 12) GTGCACTG 1 chr2L:6991229-6991349 ( 3) GTGCACTG 1 chrX:4970030-4970150 ( 112) GTGCACTG 1 chr3R:8038001-8038121 ( 19) GTGCACTG 1 chrX:7491042-7491162 ( 3) GTGCACTG 1 chr3R:8154082-8154202 ( 11) ATGCACTG 1 chr2L:5249894-5250014 ( 29) ATGCACTG 1 chr3L:4721982-4722102 ( 9) ATGCACTG 1 chr2R:18271160-18271280 ( 23) ATGCACTG 1 chr3L:8027804-8027924 ( 16) CTGCACAG 1 chr3R:30284044-30284164 ( 46) CTGCACAG 1 chr3R:27186288-27186408 ( 5) CCGCACTG 1 chr2L:5483202-5483322 ( 3) ATGCACAG 1 chrX:17879445-17879565 ( 58) ATGCACAG 1 chr3R:14711552-14711672 ( 65) ATGCACAG 1 chr2R:10600485-10600605 ( 104) ACGCACTG 1 chr2R:18209836-18209956 ( 105) GTGCACTC 1 chr2L:1887885-1888005 ( 69) CTGCACCG 1 chr3L:2471178-2471298 ( 75) ATGCACTC 1 chr3L:6269076-6269196 ( 24) ATGCACTC 1 chr3R:9966206-9966326 ( 13) CAGCACTG 1 chr2L:7619399-7619519 ( 95) CTGCACAC 1 chr2L:11399641-11399761 ( 48) GAGCACTG 1 chrX:12015139-12015259 ( 3) ACGCACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2246 E= 4.9e-004 26 108 74 -1140 -220 -51 -1140 123 -1140 -1140 269 -1140 -1140 266 -1140 -1140 155 -1140 -1140 -1140 -1140 266 -1140 -1140 -39 -209 -1140 102 -1140 -9 246 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.9e-004 0.407407 0.333333 0.259259 0.000000 0.074074 0.111111 0.000000 0.814815 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.259259 0.037037 0.000000 0.703704 0.000000 0.148148 0.851852 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VTGCACTG MEME-1 regular expression -------------------------------------------------------------------------------- [ACG]TGCAC[TA]G -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GGSGAGGG MEME-2 width = 8 sites = 8 llr = 90 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSGAGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::81:: pos.-specific C ::6:3::1 probability G 994a:9a9 matrix T 11:::::: bits 2.7 * * 2.4 * * 2.1 * ** 1.9 ** * *** Relative 1.6 **** *** Entropy 1.3 **** *** (16.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGAGGG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGAGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14765530-14765650 81 7.45e-07 TGTGCTCGAT GGCGAGGG AGAGGCAGCG chr3R:30800386-30800506 67 1.09e-06 AACGAACTAA GGCGCGGG TTTTAGGATG chr3R:23148494-23148614 107 1.09e-06 TGATGATGGT GGCGCGGG TCGGAG chr2R:15745189-15745309 7 1.82e-06 TATGAA GGGGAGGG TGGGTGAAAC chr3R:29506740-29506860 54 4.02e-06 CTACATTTAT GGGGAGGC ATATAAAATC chr3R:31225149-31225269 96 5.65e-06 AAATAAAGAC GGCGAAGG GGACAAACCG chr3R:19924432-19924552 47 9.32e-06 GCCCTTATTT GTCGAGGG CAAATATGGC chr3R:31679995-31680115 5 1.65e-05 TTTT TGGGAGGG GAGTTGGGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGAGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14765530-14765650 7.4e-07 80_[+2]_32 chr3R:30800386-30800506 1.1e-06 66_[+2]_46 chr3R:23148494-23148614 1.1e-06 106_[+2]_6 chr2R:15745189-15745309 1.8e-06 6_[+2]_106 chr3R:29506740-29506860 4e-06 53_[+2]_59 chr3R:31225149-31225269 5.7e-06 95_[+2]_17 chr3R:19924432-19924552 9.3e-06 46_[+2]_66 chr3R:31679995-31680115 1.6e-05 4_[+2]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGAGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSGAGGG width=8 seqs=8 chr3R:14765530-14765650 ( 81) GGCGAGGG 1 chr3R:30800386-30800506 ( 67) GGCGCGGG 1 chr3R:23148494-23148614 ( 107) GGCGCGGG 1 chr2R:15745189-15745309 ( 7) GGGGAGGG 1 chr3R:29506740-29506860 ( 54) GGGGAGGC 1 chr3R:31225149-31225269 ( 96) GGCGAAGG 1 chr3R:19924432-19924552 ( 47) GTCGAGGG 1 chr3R:31679995-31680115 ( 5) TGGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGAGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 1.5e+002 -965 -965 249 -147 -965 -965 249 -147 -965 198 127 -965 -965 -965 269 -965 114 66 -965 -965 -144 -965 249 -965 -965 -965 269 -965 -965 -34 249 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGAGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.5e+002 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.875000 0.125000 0.000000 0.625000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGAGGG MEME-2 regular expression -------------------------------------------------------------------------------- GG[CG]G[AC]GGG -------------------------------------------------------------------------------- Time 13.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCWGTG MEME-3 width = 8 sites = 23 llr = 211 E-value = 7.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCWGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C :a1a12:: probability G 1:1::8:a matrix T 9:8:3:a: bits 2.7 * * 2.4 * * * 2.1 * * * * 1.9 * * * * Relative 1.6 * * *** Entropy 1.3 * * *** (13.2 bits) 1.1 ** * *** 0.8 **** *** 0.5 **** *** 0.3 ******** 0.0 -------- Multilevel TCTCAGTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCWGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20162698-20162818 107 8.45e-06 TCGTTTTTTT TCTCAGTG GACTGG chrX:7179420-7179540 106 8.45e-06 CCCCATTTTC TCTCAGTG CTCTTGT chr2L:18341093-18341213 110 8.45e-06 CAAATACATT TCTCAGTG AGA chrX:15543677-15543797 50 8.45e-06 GCCTTTTTTT TCTCAGTG CACTACTGCC chr3R:29506740-29506860 111 8.45e-06 TAGTATTTTT TCTCAGTG TA chrX:13679753-13679873 112 1.70e-05 CGAATTTTTC TCTCTGTG C chr3L:2471178-2471298 102 1.70e-05 TCTCTGATTT TCTCTGTG TGCAACTTCC chr3R:14765530-14765650 108 1.70e-05 GGTTGCAGAT TCTCTGTG TCTCA chr2L:15304552-15304672 105 1.70e-05 AACGTGTTTT TCTCTGTG TAAAGAGA chr2L:9829021-9829141 111 2.09e-05 CCACCTTTTC TCCCAGTG CA chr3L:4619945-4620065 31 2.09e-05 CTAATTATAC TCCCAGTG ATCACTTGAA chrX:21074463-21074583 112 3.25e-05 TGTTCGTTTC TCGCAGTG T chrX:6059287-6059407 112 3.63e-05 GTGGAAATTT GCTCAGTG T chr2L:6991229-6991349 101 4.49e-05 ATGGCACTTT TCTCACTG TGCACAGTAA chr3L:4545809-4545929 81 5.26e-05 TGTAAGCTTA TCTCGGTG AAACTAACTT chr2L:5429248-5429368 2 5.26e-05 A TCGCTGTG GTACCACGAA chr3R:13793419-13793539 39 5.65e-05 AAATAATCAT GCTCTGTG TAATCTACAA chr3L:6359365-6359485 46 6.52e-05 TGCTTAAGCT TCTCTCTG CCAGATACGT chr2L:7503849-7503969 33 6.52e-05 CAAATGATGT TCTCTCTG GACTTGATCT chr3R:23148494-23148614 50 6.70e-05 GCAGATCTCC TCCCCGTG CTGCCCTTGT chr2L:18566794-18566914 27 7.09e-05 AATACAATAG CCTCAGTG GTTGTATAAT chr2L:10791469-10791589 106 8.80e-05 TTATCTTTTC TCTCCCTG TACTGGA chrX:4175931-4176051 84 1.55e-04 GTATGACTCT TTTCAGTG TACTTGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCWGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20162698-20162818 8.4e-06 106_[+3]_6 chrX:7179420-7179540 8.4e-06 105_[+3]_7 chr2L:18341093-18341213 8.4e-06 109_[+3]_3 chrX:15543677-15543797 8.4e-06 49_[+3]_63 chr3R:29506740-29506860 8.4e-06 110_[+3]_2 chrX:13679753-13679873 1.7e-05 111_[+3]_1 chr3L:2471178-2471298 1.7e-05 101_[+3]_11 chr3R:14765530-14765650 1.7e-05 107_[+3]_5 chr2L:15304552-15304672 1.7e-05 104_[+3]_8 chr2L:9829021-9829141 2.1e-05 110_[+3]_2 chr3L:4619945-4620065 2.1e-05 30_[+3]_82 chrX:21074463-21074583 3.3e-05 111_[+3]_1 chrX:6059287-6059407 3.6e-05 111_[+3]_1 chr2L:6991229-6991349 4.5e-05 100_[+3]_12 chr3L:4545809-4545929 5.3e-05 80_[+3]_32 chr2L:5429248-5429368 5.3e-05 1_[+3]_111 chr3R:13793419-13793539 5.6e-05 38_[+3]_74 chr3L:6359365-6359485 6.5e-05 45_[+3]_67 chr2L:7503849-7503969 6.5e-05 32_[+3]_80 chr3R:23148494-23148614 6.7e-05 49_[+3]_63 chr2L:18566794-18566914 7.1e-05 26_[+3]_86 chr2L:10791469-10791589 8.8e-05 105_[+3]_7 chrX:4175931-4176051 0.00015 83_[+3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCWGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCWGTG width=8 seqs=23 chr2R:20162698-20162818 ( 107) TCTCAGTG 1 chrX:7179420-7179540 ( 106) TCTCAGTG 1 chr2L:18341093-18341213 ( 110) TCTCAGTG 1 chrX:15543677-15543797 ( 50) TCTCAGTG 1 chr3R:29506740-29506860 ( 111) TCTCAGTG 1 chrX:13679753-13679873 ( 112) TCTCTGTG 1 chr3L:2471178-2471298 ( 102) TCTCTGTG 1 chr3R:14765530-14765650 ( 108) TCTCTGTG 1 chr2L:15304552-15304672 ( 105) TCTCTGTG 1 chr2L:9829021-9829141 ( 111) TCCCAGTG 1 chr3L:4619945-4620065 ( 31) TCCCAGTG 1 chrX:21074463-21074583 ( 112) TCGCAGTG 1 chrX:6059287-6059407 ( 112) GCTCAGTG 1 chr2L:6991229-6991349 ( 101) TCTCACTG 1 chr3L:4545809-4545929 ( 81) TCTCGGTG 1 chr2L:5429248-5429368 ( 2) TCGCTGTG 1 chr3R:13793419-13793539 ( 39) GCTCTGTG 1 chr3L:6359365-6359485 ( 46) TCTCTCTG 1 chr2L:7503849-7503969 ( 33) TCTCTCTG 1 chr3R:23148494-23148614 ( 50) TCCCCGTG 1 chr2L:18566794-18566914 ( 27) CCTCAGTG 1 chr2L:10791469-10791589 ( 106) TCTCCCTG 1 chrX:4175931-4176051 ( 84) TTTCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCWGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6641 E= 7.8e+002 -1117 -186 -84 133 -1117 260 -1117 -299 -1117 -28 -84 118 -1117 266 -1117 -1117 62 -86 -183 1 -1117 14 241 -1117 -1117 -1117 -1117 153 -1117 -1117 269 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCWGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 7.8e+002 0.000000 0.043478 0.086957 0.869565 0.000000 0.956522 0.000000 0.043478 0.000000 0.130435 0.086957 0.782609 0.000000 1.000000 0.000000 0.000000 0.521739 0.086957 0.043478 0.347826 0.000000 0.173913 0.826087 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCWGTG MEME-3 regular expression -------------------------------------------------------------------------------- TCTC[AT]GTG -------------------------------------------------------------------------------- Time 19.86 secs. ******************************************************************************** ******************************************************************************** MOTIF SYCTGGCC MEME-4 width = 8 sites = 12 llr = 122 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYCTGGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::::1 pos.-specific C 559:::88 probability G 5:11aa2: matrix T :4:9:::2 bits 2.7 ** 2.4 ** 2.1 * *** 1.9 * *** Relative 1.6 * * *** Entropy 1.3 * ****** (14.6 bits) 1.1 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCTGGCC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCTGGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2455516-2455636 63 1.62e-06 TCAATTTGAA GCCTGGCC ATTATGTGAC chrX:768034-768154 7 5.17e-06 GTTTGT GTCTGGCC CCCATCCTCC chr2L:1887885-1888005 100 5.17e-06 TCTGTTTTGT GTCTGGCC TGCTGGTGCT chrX:2358335-2358455 83 5.17e-06 TATGTACAAG CTCTGGCC AGCAATGGTC chrX:13245866-13245986 1 7.49e-06 . CCCTGGGC GAACATGTAA chr3L:6285555-6285675 78 7.49e-06 TTACCAAATT GCCGGGCC AATTCGCCCG chr3L:1683252-1683372 101 1.10e-05 TTTGAAATTG CCCTGGCT ACGCCCCTGT chr2L:20802341-20802461 2 1.10e-05 A GCCTGGCT ACAACGAACG chr3L:818520-818640 101 2.12e-05 TCATTCGTAG CTCTGGGC AACGAAAGTG chr3L:6269076-6269196 9 2.12e-05 GGCATCGA CACTGGCC AAAGCCAATG chr3L:18198892-18199012 100 2.47e-05 TCGCATATTT CCCTGGCA AAAAGAAAGT chr2L:18648362-18648482 5 3.67e-05 GACA GTGTGGCC TCTTTAAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCTGGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2455516-2455636 1.6e-06 62_[+4]_50 chrX:768034-768154 5.2e-06 6_[+4]_106 chr2L:1887885-1888005 5.2e-06 99_[+4]_13 chrX:2358335-2358455 5.2e-06 82_[+4]_30 chrX:13245866-13245986 7.5e-06 [+4]_112 chr3L:6285555-6285675 7.5e-06 77_[+4]_35 chr3L:1683252-1683372 1.1e-05 100_[+4]_12 chr2L:20802341-20802461 1.1e-05 1_[+4]_111 chr3L:818520-818640 2.1e-05 100_[+4]_12 chr3L:6269076-6269196 2.1e-05 8_[+4]_104 chr3L:18198892-18199012 2.5e-05 99_[+4]_13 chr2L:18648362-18648482 3.7e-05 4_[+4]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCTGGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYCTGGCC width=8 seqs=12 chrX:2455516-2455636 ( 63) GCCTGGCC 1 chrX:768034-768154 ( 7) GTCTGGCC 1 chr2L:1887885-1888005 ( 100) GTCTGGCC 1 chrX:2358335-2358455 ( 83) CTCTGGCC 1 chrX:13245866-13245986 ( 1) CCCTGGGC 1 chr3L:6285555-6285675 ( 78) GCCGGGCC 1 chr3L:1683252-1683372 ( 101) CCCTGGCT 1 chr2L:20802341-20802461 ( 2) GCCTGGCT 1 chr3L:818520-818640 ( 101) CTCTGGGC 1 chr3L:6269076-6269196 ( 9) CACTGGCC 1 chr3L:18198892-18199012 ( 100) CCCTGGCA 1 chr2L:18648362-18648482 ( 5) GTGTGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCTGGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 1.3e+004 -1023 166 169 -1023 -203 166 -1023 27 -1023 254 -90 -1023 -1023 -1023 -90 140 -1023 -1023 269 -1023 -1023 -1023 269 -1023 -1023 240 10 -1023 -203 225 -1023 -105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCTGGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.3e+004 0.000000 0.500000 0.500000 0.000000 0.083333 0.500000 0.000000 0.416667 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.083333 0.750000 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYCTGGCC MEME-4 regular expression -------------------------------------------------------------------------------- [CG][CT]CTGGCC -------------------------------------------------------------------------------- Time 26.08 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTTCSG MEME-5 width = 8 sites = 7 llr = 79 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTTCSG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C aa7::96: probability G :::::14a matrix T :::aa::: bits 2.7 ** * 2.4 ** * 2.1 ** * * 1.9 ** * * Relative 1.6 ******** Entropy 1.3 ******** (16.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCTTCCG consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTCSG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7420439-7420559 34 1.83e-06 TTTAAACAGG CCCTTCCG TTTAAAAATT chr2L:14248038-14248158 84 1.83e-06 AAGTGTATTT CCCTTCCG ATTTCGTCGT chr3R:8968945-8969065 11 1.83e-06 CTCTCTTTAA CCCTTCCG TCTACACAGT chr3R:9966206-9966326 2 3.62e-06 G CCCTTCGG TGACAGCACT chr3R:15588697-15588817 33 7.55e-06 TGAAATATTA CCATTCCG AAATATAATA chrX:740019-740139 100 1.32e-05 GGGGCATTTG CCATTCGG TCATCTCGTG chr3L:4545809-4545929 101 1.50e-05 ACTAACTTTG CCCTTGGG TGTAGTACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTCSG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7420439-7420559 1.8e-06 33_[+5]_79 chr2L:14248038-14248158 1.8e-06 83_[+5]_29 chr3R:8968945-8969065 1.8e-06 10_[+5]_102 chr3R:9966206-9966326 3.6e-06 1_[+5]_111 chr3R:15588697-15588817 7.6e-06 32_[+5]_80 chrX:740019-740139 1.3e-05 99_[+5]_13 chr3L:4545809-4545929 1.5e-05 100_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTCSG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTTCSG width=8 seqs=7 chr2L:7420439-7420559 ( 34) CCCTTCCG 1 chr2L:14248038-14248158 ( 84) CCCTTCCG 1 chr3R:8968945-8969065 ( 11) CCCTTCCG 1 chr3R:9966206-9966326 ( 2) CCCTTCGG 1 chr3R:15588697-15588817 ( 33) CCATTCCG 1 chrX:740019-740139 ( 100) CCATTCGG 1 chr3L:4545809-4545929 ( 101) CCCTTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTCSG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 3.4e+004 -945 266 -945 -945 -945 266 -945 -945 -25 218 -945 -945 -945 -945 -945 153 -945 -945 -945 153 -945 244 -12 -945 -945 185 146 -945 -945 -945 269 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTCSG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.4e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTTCSG MEME-5 regular expression -------------------------------------------------------------------------------- CC[CA]TTC[CG]G -------------------------------------------------------------------------------- Time 32.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:740019-740139 7.28e-05 99_[+5(1.32e-05)]_13 chr3L:6269076-6269196 2.97e-03 8_[+4(2.12e-05)]_7_[+1(5.86e-05)]_\ 89 chrX:14897726-14897846 2.06e-01 120 chr2L:4361558-4361678 1.33e-02 120 chrX:17113430-17113550 9.96e-01 120 chr3L:20953397-20953517 2.50e-01 120 chr2L:5429248-5429368 1.74e-01 1_[+3(5.26e-05)]_111 chrX:2358335-2358455 7.31e-04 82_[+4(5.17e-06)]_30 chr3L:6270424-6270544 7.51e-01 120 chr2R:21569783-21569903 9.46e-01 120 chrX:4175931-4176051 2.56e-01 120 chrX:8255044-8255164 7.41e-01 120 chr3L:12915643-12915763 6.13e-01 120 chr3R:14498192-14498312 2.18e-01 120 chr3R:29199886-29200006 1.39e-02 120 chr3R:29506740-29506860 1.42e-04 53_[+2(4.02e-06)]_49_[+3(8.45e-06)]_\ 2 chrX:15543677-15543797 1.95e-04 49_[+3(8.45e-06)]_63 chr2L:11399641-11399761 2.37e-01 47_[+1(7.72e-05)]_65 chr3L:15258489-15258609 9.99e-01 120 chr2R:18923619-18923739 9.53e-01 120 chr3R:30076226-30076346 1.59e-01 120 chr3R:9913589-9913709 9.90e-01 120 chrX:17518407-17518527 4.79e-01 120 chrX:7491042-7491162 2.64e-03 2_[+1(7.64e-06)]_110 chr3R:23148494-23148614 7.94e-05 49_[+3(6.70e-05)]_49_[+2(1.09e-06)]_\ 6 chr3R:31679995-31680115 3.74e-03 4_[+2(1.65e-05)]_108 chr3R:31991908-31992028 1.00e+00 120 chr3L:12058555-12058675 4.75e-01 120 chrX:9787518-9787638 5.18e-01 120 chr2R:18271160-18271280 2.57e-03 22_[+1(1.59e-05)]_90 chr2L:7619399-7619519 6.04e-02 94_[+1(7.72e-05)]_18 chr3L:18276043-18276163 7.57e-01 120 chrX:3055915-3056035 9.53e-01 120 chr2L:11871086-11871206 9.93e-01 120 chrX:779477-779597 5.18e-01 120 chr3L:1457352-1457472 7.98e-01 120 chr3L:14350264-14350384 3.30e-01 120 chr2R:10600485-10600605 4.40e-02 103_[+1(4.28e-05)]_9 chr3L:1031039-1031159 1.73e-01 120 chr3L:4619945-4620065 1.43e-01 30_[+3(2.09e-05)]_82 chr3R:26429741-26429861 9.40e-01 120 chr2L:15275933-15276053 3.78e-01 120 chr2L:18341093-18341213 1.50e-02 109_[+3(8.45e-06)]_3 chr3L:21080579-21080699 4.05e-01 120 chr3L:15174220-15174340 9.80e-01 120 chr2L:6508798-6508918 9.92e-01 120 chrX:6022267-6022387 6.39e-02 120 chrX:7179420-7179540 2.92e-03 105_[+3(8.45e-06)]_7 chrX:22846522-22846642 6.07e-01 120 chr2L:3341706-3341826 7.70e-01 120 chr3L:6285555-6285675 1.43e-03 77_[+4(7.49e-06)]_35 chr3R:20286150-20286270 1.90e-01 120 chrX:6573915-6574035 7.46e-01 120 chr2L:17750245-17750365 4.90e-02 120 chrX:342594-342714 9.96e-01 120 chr2L:7573334-7573454 1.35e-01 120 chrX:12000335-12000455 5.04e-01 120 chrX:6528654-6528774 9.96e-01 120 chr3R:8968945-8969065 1.67e-03 10_[+5(1.83e-06)]_102 chr3R:15588697-15588817 1.27e-01 32_[+5(7.55e-06)]_80 chr3R:8038001-8038121 1.35e-04 18_[+1(7.64e-06)]_94 chr3R:8847408-8847528 3.51e-03 108_[+1(3.86e-06)]_4 chr3R:31225149-31225269 3.25e-03 95_[+2(5.65e-06)]_17 chr3L:6471991-6472111 6.57e-01 120 chr3R:17825903-17826023 9.98e-01 120 chr2R:23567397-23567517 1.12e-01 120 chr2L:18146811-18146931 5.10e-01 120 chr3L:8157189-8157309 7.13e-01 120 chr2R:12646915-12647035 8.55e-01 120 chrX:17571071-17571191 5.75e-01 120 chr2L:14248038-14248158 2.93e-03 83_[+5(1.83e-06)]_29 chr3L:818520-818640 8.72e-03 100_[+4(2.12e-05)]_12 chr2L:11395780-11395900 6.30e-01 120 chrX:6059287-6059407 3.24e-03 111_[+3(3.63e-05)]_1 chr2R:24955699-24955819 7.93e-02 120 chrX:19162376-19162496 1.90e-01 120 chr2R:15745189-15745309 7.82e-03 6_[+2(1.82e-06)]_106 chr3R:13934760-13934880 5.28e-01 120 chr3L:13107383-13107503 3.77e-01 120 chr2L:1887885-1888005 3.41e-05 68_[+1(4.84e-05)]_23_[+4(5.17e-06)]_\ 13 chr2L:6472487-6472607 9.65e-01 120 chr3R:14711552-14711672 2.46e-02 64_[+1(3.51e-05)]_48 chr2R:23299470-23299590 5.68e-02 120 chrX:5044588-5044708 9.21e-01 120 chrX:5926865-5926985 8.45e-02 120 chrX:9468467-9468587 1.44e-01 120 chr3L:10709216-10709336 7.42e-01 120 chr2R:20206680-20206800 5.73e-01 120 chr2L:382925-383045 9.93e-01 120 chr3R:28633869-28633989 8.44e-01 120 chr2L:11222231-11222351 4.46e-01 120 chrX:8891102-8891222 6.35e-01 120 chr3R:27140048-27140168 8.46e-01 120 chrX:2788785-2788905 5.89e-01 120 chr2R:20136855-20136975 2.48e-02 120 chr3R:23496628-23496748 9.62e-01 120 chrX:10104599-10104719 1.41e-01 120 chr3L:166656-166776 1.28e-02 120 chr3R:26892880-26893000 8.58e-01 120 chrX:2455516-2455636 4.37e-05 62_[+4(1.62e-06)]_36_[+4(3.67e-05)]_\ 6 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chr3R:22185805-22185925 9.18e-01 120 chr3L:8027804-8027924 5.76e-02 15_[+1(1.97e-05)]_97 chrX:13679753-13679873 2.00e-03 111_[+3(1.70e-05)]_1 chr3L:6359365-6359485 8.81e-02 45_[+3(6.52e-05)]_67 chr2R:6556970-6557090 4.32e-01 120 chr3L:734005-734125 7.97e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************