******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6765.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:8512513-8512633 1.0000 120 chr2R:6149492-6149612 1.0000 120 chrX:13322583-13322703 1.0000 120 chr2L:1637992-1638112 1.0000 120 chr3R:4359731-4359851 1.0000 120 chr2R:9950279-9950399 1.0000 120 chr3L:21192081-21192201 1.0000 120 chr3R:9646339-9646459 1.0000 120 chr3R:29990770-29990890 1.0000 120 chr2R:19276441-19276561 1.0000 120 chrX:8093526-8093646 1.0000 120 chr2R:15515746-15515866 1.0000 120 chr3R:25870500-25870620 1.0000 120 chr2L:4928515-4928635 1.0000 120 chr3R:30537001-30537121 1.0000 120 chr3L:1969938-1970058 1.0000 120 chr3L:2254453-2254573 1.0000 120 chr2R:17918859-17918979 1.0000 120 chr3L:15741920-15742040 1.0000 120 chr2R:21417154-21417274 1.0000 120 chr3R:6766361-6766481 1.0000 120 chr2R:11192612-11192732 1.0000 120 chr2R:17343434-17343554 1.0000 120 chr3R:5696537-5696657 1.0000 120 chr3L:11253504-11253624 1.0000 120 chr3L:3931981-3932101 1.0000 120 chr2L:17433370-17433490 1.0000 120 chr2R:16225495-16225615 1.0000 120 chrX:18657581-18657701 1.0000 120 chr3R:28831354-28831474 1.0000 120 chr3R:10131198-10131318 1.0000 120 chr3L:11484602-11484722 1.0000 120 chr2R:24957459-24957579 1.0000 120 chr3R:19909327-19909447 1.0000 120 chr3R:12716422-12716542 1.0000 120 chr3L:2585667-2585787 1.0000 120 chr2R:23415282-23415402 1.0000 120 chr2R:13940061-13940181 1.0000 120 chr3L:19496876-19496996 1.0000 120 chr3L:12203814-12203934 1.0000 120 chrX:11812992-11813112 1.0000 120 chr3R:24102562-24102682 1.0000 120 chr3R:30198958-30199078 1.0000 120 chr2L:8127068-8127188 1.0000 120 chrX:2642924-2643044 1.0000 120 chrX:8437178-8437298 1.0000 120 chr3L:11577564-11577684 1.0000 120 chr2R:7749750-7749870 1.0000 120 chr3R:26956720-26956840 1.0000 120 chr2R:18480471-18480591 1.0000 120 chrX:17579883-17580003 1.0000 120 chr3R:9977662-9977782 1.0000 120 chr3R:23297259-23297379 1.0000 120 chr2L:13158068-13158188 1.0000 120 chrX:15803300-15803420 1.0000 120 chr2R:18761680-18761800 1.0000 120 chr2R:12670126-12670246 1.0000 120 chr3R:25056399-25056519 1.0000 120 chr3L:21262468-21262588 1.0000 120 chr2R:24971753-24971873 1.0000 120 chr3R:4360710-4360830 1.0000 120 chr3R:13382946-13383066 1.0000 120 chr2L:12494039-12494159 1.0000 120 chr3R:26182029-26182149 1.0000 120 chr2L:20824252-20824372 1.0000 120 chr2R:22387339-22387459 1.0000 120 chr3L:3072163-3072283 1.0000 120 chr3L:17003654-17003774 1.0000 120 chrX:8780857-8780977 1.0000 120 chr2L:9509762-9509882 1.0000 120 chr3R:18296273-18296393 1.0000 120 chr3R:22756465-22756585 1.0000 120 chr3R:19673136-19673256 1.0000 120 chr2R:10151187-10151307 1.0000 120 chr2L:16541739-16541859 1.0000 120 chrX:3282096-3282216 1.0000 120 chr3R:15402799-15402919 1.0000 120 chr3L:18020992-18021112 1.0000 120 chr2R:17108802-17108922 1.0000 120 chr3L:10747814-10747934 1.0000 120 chr3R:22518478-22518598 1.0000 120 chrX:13281393-13281513 1.0000 120 chr3R:11243247-11243367 1.0000 120 chr3L:616326-616446 1.0000 120 chr2R:7745211-7745331 1.0000 120 chr2R:17028012-17028132 1.0000 120 chr3L:6706926-6707046 1.0000 120 chrX:13089745-13089865 1.0000 120 chr3L:8513430-8513550 1.0000 120 chr3R:26556058-26556178 1.0000 120 chr2R:21158452-21158572 1.0000 120 chr3L:8675113-8675233 1.0000 120 chr2L:85214-85334 1.0000 120 chr2L:12493210-12493330 1.0000 120 chr2R:18442785-18442905 1.0000 120 chr3R:9872656-9872776 1.0000 120 chr3R:14472711-14472831 1.0000 120 chr3L:14804769-14804889 1.0000 120 chr3L:10679881-10680001 1.0000 120 chr2R:6245437-6245557 1.0000 120 chr3R:9952913-9953033 1.0000 120 chr3R:13802338-13802458 1.0000 120 chr2L:10976817-10976937 1.0000 120 chr3L:17539066-17539186 1.0000 120 chrX:2642725-2642845 1.0000 120 chr3R:16215152-16215272 1.0000 120 chr3L:3309102-3309222 1.0000 120 chr3L:17652149-17652269 1.0000 120 chr3R:14290089-14290209 1.0000 120 chr2R:22390338-22390458 1.0000 120 chr3R:5302257-5302377 1.0000 120 chr3L:8519311-8519431 1.0000 120 chr2L:14616077-14616197 1.0000 120 chr2L:6448169-6448289 1.0000 120 chr2R:9553552-9553672 1.0000 120 chr2R:24684978-24685098 1.0000 120 chr2R:16669847-16669967 1.0000 120 chr3R:22636367-22636487 1.0000 120 chr3R:9448456-9448576 1.0000 120 chr2L:7571860-7571980 1.0000 120 chr2L:5062978-5063098 1.0000 120 chr2R:23997250-23997370 1.0000 120 chr2L:7778408-7778528 1.0000 120 chr2R:21648434-21648554 1.0000 120 chr3L:9466634-9466754 1.0000 120 chr2L:5151566-5151686 1.0000 120 chr3R:18226431-18226551 1.0000 120 chr2R:19138057-19138177 1.0000 120 chr2R:9060111-9060231 1.0000 120 chr3R:17966146-17966266 1.0000 120 chr2L:1117028-1117148 1.0000 120 chr3R:29066436-29066556 1.0000 120 chr3R:25448871-25448991 1.0000 120 chr3R:20310870-20310990 1.0000 120 chr3R:31758968-31759088 1.0000 120 chr3R:8938862-8938982 1.0000 120 chr2L:9864337-9864457 1.0000 120 chr3L:15814171-15814291 1.0000 120 chr3R:5746798-5746918 1.0000 120 chr3L:3755775-3755895 1.0000 120 chr3L:8683898-8684018 1.0000 120 chr3L:3390621-3390741 1.0000 120 chr2L:12719053-12719173 1.0000 120 chr2R:21193481-21193601 1.0000 120 chr2L:8719795-8719915 1.0000 120 chr3R:5032036-5032156 1.0000 120 chr2L:4829182-4829302 1.0000 120 chr3R:12543059-12543179 1.0000 120 chr2L:9908632-9908752 1.0000 120 chr2R:12174174-12174294 1.0000 120 chr3R:24105293-24105413 1.0000 120 chr2R:7879166-7879286 1.0000 120 chr3R:12657088-12657208 1.0000 120 chr2L:425644-425764 1.0000 120 chr3L:21433877-21433997 1.0000 120 chr2R:22312727-22312847 1.0000 120 chrX:13754608-13754728 1.0000 120 chr3L:14002583-14002703 1.0000 120 chr3R:17007448-17007568 1.0000 120 chr2R:21648187-21648307 1.0000 120 chr3R:16252065-16252185 1.0000 120 chr2R:8952257-8952377 1.0000 120 chr3R:30013341-30013461 1.0000 120 chr3L:11550480-11550600 1.0000 120 chr2L:8529149-8529269 1.0000 120 chr2R:22590686-22590806 1.0000 120 chrX:5664338-5664458 1.0000 120 chr2R:5782813-5782933 1.0000 120 chr2R:15802201-15802321 1.0000 120 chr2R:11652463-11652583 1.0000 120 chrX:18082841-18082961 1.0000 120 chr3L:17001177-17001297 1.0000 120 chr2L:21623775-21623895 1.0000 120 chrX:515852-515972 1.0000 120 chr3R:5571160-5571280 1.0000 120 chr3R:27605821-27605941 1.0000 120 chr2R:11192816-11192936 1.0000 120 chr3L:8741357-8741477 1.0000 120 chr2L:6794404-6794524 1.0000 120 chrX:11558571-11558691 1.0000 120 chr2R:18539976-18540096 1.0000 120 chr2R:14487703-14487823 1.0000 120 chr2L:8088327-8088447 1.0000 120 chr2R:21659988-21660108 1.0000 120 chr3L:19907462-19907582 1.0000 120 chr2L:10849793-10849913 1.0000 120 chr3L:19132750-19132870 1.0000 120 chr3L:629479-629599 1.0000 120 chr3L:8525438-8525558 1.0000 120 chr3L:21859825-21859945 1.0000 120 chr3L:15034449-15034569 1.0000 120 chrX:15710447-15710567 1.0000 120 chr3L:7529630-7529750 1.0000 120 chr2L:20840596-20840716 1.0000 120 chr2R:17477273-17477393 1.0000 120 chr2R:7049115-7049235 1.0000 120 chr3L:20386189-20386309 1.0000 120 chr2R:7758797-7758917 1.0000 120 chr3L:8347498-8347618 1.0000 120 chr3R:7515929-7516049 1.0000 120 chr3R:13450439-13450559 1.0000 120 chr3L:19924968-19925088 1.0000 120 chrX:3289124-3289244 1.0000 120 chr2R:24022222-24022342 1.0000 120 chr3L:13912910-13913030 1.0000 120 chr3R:26966890-26967010 1.0000 120 chr3L:11291604-11291724 1.0000 120 chr3R:9944581-9944701 1.0000 120 chr2L:5977599-5977719 1.0000 120 chr3L:16146715-16146835 1.0000 120 chr2R:7011616-7011736 1.0000 120 chr3R:15290525-15290645 1.0000 120 chr3R:12562176-12562296 1.0000 120 chr2R:14332399-14332519 1.0000 120 chr3L:17530042-17530162 1.0000 120 chr3R:11312536-11312656 1.0000 120 chr2R:13437928-13438048 1.0000 120 chr3L:19635530-19635650 1.0000 120 chr2L:5096965-5097085 1.0000 120 chr3L:550555-550675 1.0000 120 chr3R:17526244-17526364 1.0000 120 chr3L:3035380-3035500 1.0000 120 chr3L:3078948-3079068 1.0000 120 chr3R:30802266-30802386 1.0000 120 chr3L:8058391-8058511 1.0000 120 chr3R:31723252-31723372 1.0000 120 chr3R:25647705-25647825 1.0000 120 chr3L:549005-549125 1.0000 120 chr3L:21349224-21349344 1.0000 120 chrX:16385980-16386100 1.0000 120 chr2L:7525375-7525495 1.0000 120 chr3L:4025859-4025979 1.0000 120 chr3R:11869328-11869448 1.0000 120 chr3L:4380392-4380512 1.0000 120 chr2L:3639932-3640052 1.0000 120 chr2L:18966977-18967097 1.0000 120 chr3R:4471193-4471313 1.0000 120 chr3R:18311075-18311195 1.0000 120 chr3R:26980498-26980618 1.0000 120 chrX:17627700-17627820 1.0000 120 chr2R:15155165-15155285 1.0000 120 chr2L:7940806-7940926 1.0000 120 chr3L:8060426-8060546 1.0000 120 chr2L:8543240-8543360 1.0000 120 chr3R:14479728-14479848 1.0000 120 chr3R:25275479-25275599 1.0000 120 chr3R:14569783-14569903 1.0000 120 chrX:16573837-16573957 1.0000 120 chr3R:18243742-18243862 1.0000 120 chr2L:3755212-3755332 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG6765/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6765.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.215 G 0.211 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.215 G 0.211 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGKGGGGG MEME-1 width = 8 sites = 14 llr = 141 E-value = 4.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKGGGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C :::::2:: probability G aa5aa87a matrix T ::3:::3: bits 2.2 ** ** * 2.0 ** ** * 1.8 ** ** * 1.6 ** *** * Relative 1.3 ** ***** Entropy 1.1 ** ***** (14.5 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGGG consensus T CT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7049115-7049235 51 3.93e-06 TATGTCTTGG GGGGGGGG GGTGGTATTG chr3L:3309102-3309222 57 3.93e-06 GGTTAGAAGG GGGGGGGG GTACGTTTCG chrX:3282096-3282216 16 3.93e-06 TGGTTGCGGG GGGGGGGG TGGTTATTAA chr2L:10849793-10849913 21 9.35e-06 CGGGGGGATT GGTGGGGG GAAACTCAAG chr3L:17001177-17001297 50 9.35e-06 TGGTCTAAAT GGTGGGGG GAGTGGGCGA chr3R:15290525-15290645 57 1.46e-05 GGAACGAGTG GGAGGGGG AGAGGTTGCG chr2R:6149492-6149612 96 1.46e-05 GGCCTTCGGT GGAGGGGG GGAAGTGGCT chr2L:5977599-5977719 82 2.01e-05 TGCTTTTGCC GGGGGGTG AGTGGGGAAA chr3R:24105293-24105413 96 2.01e-05 tcttattcGC GGGGGGTG TTACGGTGGG chr3L:629479-629599 5 2.41e-05 ACGA GGGGGCGG GGACCAGACC chr3L:17003654-17003774 18 2.41e-05 GGGGGGTAGC GGGGGCGG GGCACTCGCT chr2R:8952257-8952377 28 3.15e-05 TTCTCTAGCG GGTGGGTG TTTTTCATGG chr2L:6448169-6448289 34 3.15e-05 TGCAGGTGGT GGTGGGTG CTGCCTGCGA chr3R:5696537-5696657 22 4.97e-05 CAAATGAGTA GGAGGCGG AAATGCGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7049115-7049235 3.9e-06 50_[+1]_62 chr3L:3309102-3309222 3.9e-06 56_[+1]_56 chrX:3282096-3282216 3.9e-06 15_[+1]_97 chr2L:10849793-10849913 9.3e-06 20_[+1]_92 chr3L:17001177-17001297 9.3e-06 49_[+1]_63 chr3R:15290525-15290645 1.5e-05 56_[+1]_56 chr2R:6149492-6149612 1.5e-05 95_[+1]_17 chr2L:5977599-5977719 2e-05 81_[+1]_31 chr3R:24105293-24105413 2e-05 95_[+1]_17 chr3L:629479-629599 2.4e-05 4_[+1]_108 chr3L:17003654-17003774 2.4e-05 17_[+1]_95 chr2R:8952257-8952377 3.2e-05 27_[+1]_85 chr2L:6448169-6448289 3.2e-05 33_[+1]_79 chr3R:5696537-5696657 5e-05 21_[+1]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKGGGGG width=8 seqs=14 chr2R:7049115-7049235 ( 51) GGGGGGGG 1 chr3L:3309102-3309222 ( 57) GGGGGGGG 1 chrX:3282096-3282216 ( 16) GGGGGGGG 1 chr2L:10849793-10849913 ( 21) GGTGGGGG 1 chr3L:17001177-17001297 ( 50) GGTGGGGG 1 chr3R:15290525-15290645 ( 57) GGAGGGGG 1 chr2R:6149492-6149612 ( 96) GGAGGGGG 1 chr2L:5977599-5977719 ( 82) GGGGGGTG 1 chr3R:24105293-24105413 ( 96) GGGGGGTG 1 chr3L:629479-629599 ( 5) GGGGGCGG 1 chr3L:17003654-17003774 ( 18) GGGGGCGG 1 chr2R:8952257-8952377 ( 28) GGTGGGTG 1 chr2L:6448169-6448289 ( 34) GGTGGGTG 1 chr3R:5696537-5696657 ( 22) GGAGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 4.9e+002 -1045 -1045 224 -1045 -1045 -1045 224 -1045 -40 -1045 124 -2 -1045 -1045 224 -1045 -1045 -1045 224 -1045 -1045 0 190 -1045 -1045 -1045 176 -2 -1045 -1045 224 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 4.9e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.214286 0.000000 0.500000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.214286 0.785714 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGGG MEME-1 regular expression -------------------------------------------------------------------------------- GG[GTA]GG[GC][GT]G -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GCHGCYGC MEME-2 width = 8 sites = 43 llr = 347 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCHGCYGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C :a3:66:a probability G a:172:a: matrix T ::3334:: bits 2.2 ** 2.0 ** ** 1.8 ** ** 1.6 ** ** Relative 1.3 ** ** Entropy 1.1 ** * *** (11.6 bits) 0.9 ** * *** 0.7 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel GCCGCCGC consensus TTTT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCYGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7011616-7011736 21 4.32e-06 TCACAAAAAC GCCGCCGC AATCCATTGC chr2R:18539976-18540096 11 4.32e-06 TCGAGCAGCC GCCGCCGC AGCTTCGACC chr2R:7745211-7745331 99 4.32e-06 TGACGTCGAC GCCGCCGC CTGCTCTGAA chr3R:22518478-22518598 18 4.32e-06 ACCACCCCTC GCCGCCGC CCACAGTGGG chr3R:9944581-9944701 92 1.59e-05 AAAGTGAGCA GCAGCCGC GGTAGAATAT chr3R:5696537-5696657 54 1.59e-05 CGGAAATGGA GCAGCCGC CATGTTGGCA chr3L:20386189-20386309 7 2.17e-05 GCGTCC GCCGCTGC TGCTGTTGCT chrX:16385980-16386100 71 3.35e-05 TCGGTCATTA GCCTCCGC GATTTTGCAA chr3R:16252065-16252185 5 3.35e-05 cgct gcctccgc ctctgctgcc chr2L:14616077-14616197 60 3.35e-05 AGGCAGCGCT GCCGTCGC CGGCTGAGCA chrX:2642725-2642845 6 3.35e-05 TATTC GCCGTCGC CGCTCTCTCG chr3R:24105293-24105413 42 4.56e-05 Gtctgctttt gctgctgc ttcttcgtct chr3R:9872656-9872776 29 4.56e-05 TGTTATTGTT GCTGCTGC GGAATTTCCA chrX:2642924-2643044 83 4.56e-05 CTGCGCTGAC GCTGCTGC GAATTTAGTT chr3L:2585667-2585787 59 4.56e-05 CTGGAGAATT GCTGCTGC TGATTCTTCG chrX:15710447-15710567 30 7.35e-05 cacgcacgGA GCAGCTGC TGAAAAGTGC chrX:5664338-5664458 74 7.35e-05 CGGCGCTCCT GCTTCCGC TTCCTGTTGG chr2L:9864337-9864457 44 7.35e-05 TGGGGCTTAA GCTTCCGC TGAAGGATGT chr2R:9553552-9553672 38 7.35e-05 CGCGTCATTT GCAGCTGC ACAGCGACCA chrX:8780857-8780977 91 7.35e-05 AACCCCCAAT GCTGTCGC CCTCTCGTTC chr2L:4829182-4829302 6 7.93e-05 CCTCA GCTGGCGC AGACACTGCG chr3R:15402799-15402919 97 7.93e-05 CTAACTAACT GCTGGCGC TGCCTAATTA chr3L:3390621-3390741 43 9.49e-05 TATCTCTGCG GCAGTCGC TAACAATTTG chr3R:18243742-18243862 28 1.16e-04 TCGTCACCAT GCCGTTGC TGCGAAAAAT chrX:11558571-11558691 102 1.16e-04 TTGGCCCGCT GCCTCTGC CACAGTTTTC chr3R:5032036-5032156 62 1.16e-04 ACTTTGTGTG GCAGGCGC CCCATATGCG chr2R:18442785-18442905 113 1.16e-04 ctcctcctct gcctcTGC chr3L:3078948-3079068 88 1.63e-04 TTTCGTAGTG GCTGTTGC CATTGCTAGT chr3R:13802338-13802458 86 1.63e-04 TCCATTACCG GCCTGCGC ATCCTGATGC chr3L:8347498-8347618 77 1.83e-04 ACACAACGTC GCGGTCGC TCCACTATTG chr2R:21193481-21193601 2 1.83e-04 T GCGTCCGC TTTATCAGCA chr2L:5062978-5063098 75 1.83e-04 CGTAATCGCA GCTGGTGC AATTTAGGCC chr2L:8127068-8127188 28 1.83e-04 TAGAATATTT GCGTCCGC TGTAACGCAG chrX:8093526-8093646 45 1.87e-04 GATGGGGATT GCGGGCGC CAAAGAGAGA chrX:3289124-3289244 30 2.19e-04 CACTTACTTA GCATCTGC GGTCAACTAT chr2R:7758797-7758917 48 2.19e-04 CTTGATTCTG GCTTTCGC ACGCGGTCAC chr2R:11652463-11652583 26 2.19e-04 GGGAGTTCTA GCAGTTGC AAAACGGATA chr2R:21417154-21417274 111 2.19e-04 AAAAATATAA GCTTTCGC TG chr2R:8952257-8952377 70 2.34e-04 GCACACTACT GCAGGTGC GGTCACACTG chrX:13754608-13754728 111 2.45e-04 TTTTATATTC GCATTCGC CG chr3L:19132750-19132870 101 3.71e-04 GTTCTTGCCA TCTGCCGC CATTTCCCCG chr2R:17343434-17343554 56 3.84e-04 TTTTCCTGAT GTCGCCGC CTTCTGCTCA chr3L:19635530-19635650 37 3.92e-04 TTCTTGGAGT TCCGCTGC GAAACGCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCYGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7011616-7011736 4.3e-06 20_[+2]_92 chr2R:18539976-18540096 4.3e-06 10_[+2]_102 chr2R:7745211-7745331 4.3e-06 98_[+2]_14 chr3R:22518478-22518598 4.3e-06 17_[+2]_95 chr3R:9944581-9944701 1.6e-05 91_[+2]_21 chr3R:5696537-5696657 1.6e-05 53_[+2]_59 chr3L:20386189-20386309 2.2e-05 6_[+2]_106 chrX:16385980-16386100 3.3e-05 70_[+2]_42 chr3R:16252065-16252185 3.3e-05 4_[+2]_108 chr2L:14616077-14616197 3.3e-05 59_[+2]_53 chrX:2642725-2642845 3.3e-05 5_[+2]_107 chr3R:24105293-24105413 4.6e-05 41_[+2]_71 chr3R:9872656-9872776 4.6e-05 28_[+2]_84 chrX:2642924-2643044 4.6e-05 82_[+2]_30 chr3L:2585667-2585787 4.6e-05 58_[+2]_54 chrX:15710447-15710567 7.4e-05 29_[+2]_83 chrX:5664338-5664458 7.4e-05 73_[+2]_39 chr2L:9864337-9864457 7.4e-05 43_[+2]_69 chr2R:9553552-9553672 7.4e-05 37_[+2]_75 chrX:8780857-8780977 7.4e-05 90_[+2]_22 chr2L:4829182-4829302 7.9e-05 5_[+2]_107 chr3R:15402799-15402919 7.9e-05 96_[+2]_16 chr3L:3390621-3390741 9.5e-05 42_[+2]_70 chr3R:18243742-18243862 0.00012 27_[+2]_85 chrX:11558571-11558691 0.00012 101_[+2]_11 chr3R:5032036-5032156 0.00012 61_[+2]_51 chr2R:18442785-18442905 0.00012 112_[+2] chr3L:3078948-3079068 0.00016 87_[+2]_25 chr3R:13802338-13802458 0.00016 85_[+2]_27 chr3L:8347498-8347618 0.00018 76_[+2]_36 chr2R:21193481-21193601 0.00018 1_[+2]_111 chr2L:5062978-5063098 0.00018 74_[+2]_38 chr2L:8127068-8127188 0.00018 27_[+2]_85 chrX:8093526-8093646 0.00019 44_[+2]_68 chrX:3289124-3289244 0.00022 29_[+2]_83 chr2R:7758797-7758917 0.00022 47_[+2]_65 chr2R:11652463-11652583 0.00022 25_[+2]_87 chr2R:21417154-21417274 0.00022 110_[+2]_2 chr2R:8952257-8952377 0.00023 69_[+2]_43 chrX:13754608-13754728 0.00024 110_[+2]_2 chr3L:19132750-19132870 0.00037 100_[+2]_12 chr2R:17343434-17343554 0.00038 55_[+2]_57 chr3L:19635530-19635650 0.00039 36_[+2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCYGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCHGCYGC width=8 seqs=43 chr2R:7011616-7011736 ( 21) GCCGCCGC 1 chr2R:18539976-18540096 ( 11) GCCGCCGC 1 chr2R:7745211-7745331 ( 99) GCCGCCGC 1 chr3R:22518478-22518598 ( 18) GCCGCCGC 1 chr3R:9944581-9944701 ( 92) GCAGCCGC 1 chr3R:5696537-5696657 ( 54) GCAGCCGC 1 chr3L:20386189-20386309 ( 7) GCCGCTGC 1 chrX:16385980-16386100 ( 71) GCCTCCGC 1 chr3R:16252065-16252185 ( 5) GCCTCCGC 1 chr2L:14616077-14616197 ( 60) GCCGTCGC 1 chrX:2642725-2642845 ( 6) GCCGTCGC 1 chr3R:24105293-24105413 ( 42) GCTGCTGC 1 chr3R:9872656-9872776 ( 29) GCTGCTGC 1 chrX:2642924-2643044 ( 83) GCTGCTGC 1 chr3L:2585667-2585787 ( 59) GCTGCTGC 1 chrX:15710447-15710567 ( 30) GCAGCTGC 1 chrX:5664338-5664458 ( 74) GCTTCCGC 1 chr2L:9864337-9864457 ( 44) GCTTCCGC 1 chr2R:9553552-9553672 ( 38) GCAGCTGC 1 chrX:8780857-8780977 ( 91) GCTGTCGC 1 chr2L:4829182-4829302 ( 6) GCTGGCGC 1 chr3R:15402799-15402919 ( 97) GCTGGCGC 1 chr3L:3390621-3390741 ( 43) GCAGTCGC 1 chr3R:18243742-18243862 ( 28) GCCGTTGC 1 chrX:11558571-11558691 ( 102) GCCTCTGC 1 chr3R:5032036-5032156 ( 62) GCAGGCGC 1 chr2R:18442785-18442905 ( 113) GCCTCTGC 1 chr3L:3078948-3079068 ( 88) GCTGTTGC 1 chr3R:13802338-13802458 ( 86) GCCTGCGC 1 chr3L:8347498-8347618 ( 77) GCGGTCGC 1 chr2R:21193481-21193601 ( 2) GCGTCCGC 1 chr2L:5062978-5063098 ( 75) GCTGGTGC 1 chr2L:8127068-8127188 ( 28) GCGTCCGC 1 chrX:8093526-8093646 ( 45) GCGGGCGC 1 chrX:3289124-3289244 ( 30) GCATCTGC 1 chr2R:7758797-7758917 ( 48) GCTTTCGC 1 chr2R:11652463-11652583 ( 26) GCAGTTGC 1 chr2R:21417154-21417274 ( 111) GCTTTCGC 1 chr2R:8952257-8952377 ( 70) GCAGGTGC 1 chrX:13754608-13754728 ( 111) GCATTCGC 1 chr3L:19132750-19132870 ( 101) TCTGCCGC 1 chr2R:17343434-17343554 ( 56) GTCGCCGC 1 chr3L:19635530-19635650 ( 37) TCCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCYGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3653 E= 2.0e+003 -1207 -1207 218 -264 -1207 219 -1207 -364 -29 70 -118 16 -1207 -1207 173 6 -1207 144 -37 -18 -1207 155 -1207 36 -1207 -1207 224 -1207 -1207 222 -1207 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCYGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 2.0e+003 0.000000 0.000000 0.953488 0.046512 0.000000 0.976744 0.000000 0.023256 0.232558 0.348837 0.093023 0.325581 0.000000 0.000000 0.697674 0.302326 0.000000 0.581395 0.162791 0.255814 0.000000 0.627907 0.000000 0.372093 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCHGCYGC MEME-2 regular expression -------------------------------------------------------------------------------- GC[CTA][GT][CT][CT]GC -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSAGCGG MEME-3 width = 8 sites = 9 llr = 98 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSAGCGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :a7::a2: probability G a:3:a:8a matrix T :::::::: bits 2.2 ** ** * 2.0 ** ** * 1.8 ** *** * 1.6 ** ***** Relative 1.3 ******** Entropy 1.1 ******** (15.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCAGCGG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAGCGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7529630-7529750 106 5.59e-06 ATGCAACAGT GCCAGCGG TATGGAG chr3L:19132750-19132870 5 5.59e-06 AAAG GCCAGCGG AAGCGGAGCT chr2R:18539976-18540096 56 5.59e-06 AGCGGCAGTC GCCAGCGG AAACGGAAGT chr3R:8938862-8938982 8 5.59e-06 CCGTTAG GCCAGCGG CCATAAAAAA chr3R:13450439-13450559 79 1.11e-05 GTCGGAAAAC GCGAGCGG TCCAAGTGGA chr3L:19907462-19907582 50 1.11e-05 TGCAGTGCGT GCGAGCGG GATGGCAAGT chrX:5664338-5664458 39 1.11e-05 TTCAACGGGA GCGAGCGG AAGTGCGCAG chr3R:27605821-27605941 86 1.68e-05 GCTTTATGAC GCCAGCCG TAAGCGTGAG chr2L:9908632-9908752 23 1.68e-05 GAATCGCCGC GCCAGCCG AAAGCTCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAGCGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7529630-7529750 5.6e-06 105_[+3]_7 chr3L:19132750-19132870 5.6e-06 4_[+3]_108 chr2R:18539976-18540096 5.6e-06 55_[+3]_57 chr3R:8938862-8938982 5.6e-06 7_[+3]_105 chr3R:13450439-13450559 1.1e-05 78_[+3]_34 chr3L:19907462-19907582 1.1e-05 49_[+3]_63 chrX:5664338-5664458 1.1e-05 38_[+3]_74 chr3R:27605821-27605941 1.7e-05 85_[+3]_27 chr2L:9908632-9908752 1.7e-05 22_[+3]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAGCGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSAGCGG width=8 seqs=9 chr3L:7529630-7529750 ( 106) GCCAGCGG 1 chr3L:19132750-19132870 ( 5) GCCAGCGG 1 chr2R:18539976-18540096 ( 56) GCCAGCGG 1 chr3R:8938862-8938982 ( 8) GCCAGCGG 1 chr3R:13450439-13450559 ( 79) GCGAGCGG 1 chr3L:19907462-19907582 ( 50) GCGAGCGG 1 chrX:5664338-5664458 ( 39) GCGAGCGG 1 chr3R:27605821-27605941 ( 86) GCCAGCCG 1 chr2L:9908632-9908752 ( 23) GCCAGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAGCGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 1.2e+003 -982 -982 224 -982 -982 222 -982 -982 -982 163 66 -982 182 -982 -982 -982 -982 -982 224 -982 -982 222 -982 -982 -982 5 188 -982 -982 -982 224 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAGCGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAGCGG MEME-3 regular expression -------------------------------------------------------------------------------- GC[CG]AGC[GC]G -------------------------------------------------------------------------------- Time 19.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMAAAGC MEME-4 width = 8 sites = 10 llr = 107 E-value = 6.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMAAAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::4aaa:: pos.-specific C :a6::::a probability G a:::::a: matrix T :::::::: bits 2.2 ** ** 2.0 ** ** 1.8 ** ***** 1.6 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCAAAGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAAAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7525375-7525495 112 1.01e-05 TCAATATTTG GCCAAAGC T chr3L:19907462-19907582 76 1.01e-05 GTTGTGTTTC GCCAAAGC AAGGTAAGAT chr3R:22636367-22636487 93 1.01e-05 GCCACCTATT GCCAAAGC CCAACTGTGA chr3R:30198958-30199078 14 1.01e-05 CATGAGTAAT GCCAAAGC AAACAACCAA chr3R:10131198-10131318 47 1.01e-05 TCGCTGCTAA GCCAAAGC TTTAGCGCtc chr2R:19276441-19276561 84 1.01e-05 GCAAAAGTTG GCCAAAGC TTTCCGCTTT chrX:515852-515972 39 2.35e-05 TGGGCTGGAT GCAAAAGC TTATTATTAA chr2L:425644-425764 98 2.35e-05 GCGCTGGCAT GCAAAAGC CAAATATTTA chr3R:28831354-28831474 15 2.35e-05 TTGAATGTGG GCAAAAGC CAGGCCAGTG chrX:18657581-18657701 92 2.35e-05 TTGCTGTCCA GCAAAAGC GTCATTTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAAAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7525375-7525495 1e-05 111_[+4]_1 chr3L:19907462-19907582 1e-05 75_[+4]_37 chr3R:22636367-22636487 1e-05 92_[+4]_20 chr3R:30198958-30199078 1e-05 13_[+4]_99 chr3R:10131198-10131318 1e-05 46_[+4]_66 chr2R:19276441-19276561 1e-05 83_[+4]_29 chrX:515852-515972 2.4e-05 38_[+4]_74 chr2L:425644-425764 2.4e-05 97_[+4]_15 chr3R:28831354-28831474 2.4e-05 14_[+4]_98 chrX:18657581-18657701 2.4e-05 91_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAAAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMAAAGC width=8 seqs=10 chr2L:7525375-7525495 ( 112) GCCAAAGC 1 chr3L:19907462-19907582 ( 76) GCCAAAGC 1 chr3R:22636367-22636487 ( 93) GCCAAAGC 1 chr3R:30198958-30199078 ( 14) GCCAAAGC 1 chr3R:10131198-10131318 ( 47) GCCAAAGC 1 chr2R:19276441-19276561 ( 84) GCCAAAGC 1 chrX:515852-515972 ( 39) GCAAAAGC 1 chr2L:425644-425764 ( 98) GCAAAAGC 1 chr3R:28831354-28831474 ( 15) GCAAAAGC 1 chrX:18657581-18657701 ( 92) GCAAAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAAAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 6.3e+002 -997 -997 224 -997 -997 222 -997 -997 49 148 -997 -997 182 -997 -997 -997 182 -997 -997 -997 182 -997 -997 -997 -997 -997 224 -997 -997 222 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAAAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMAAAGC MEME-4 regular expression -------------------------------------------------------------------------------- GC[CA]AAAGC -------------------------------------------------------------------------------- Time 26.16 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATATTT MEME-5 width = 8 sites = 50 llr = 392 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 96a:8::: pos.-specific C 13:::::: probability G ::::::3: matrix T :1:a2a7a bits 2.2 2.0 1.8 ** * * 1.6 ** * * Relative 1.3 * ** * * Entropy 1.1 * ****** (11.3 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAATATTT consensus C T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14569783-14569903 68 4.66e-05 TTAAGATTCG AAATATTT TTTTTTAGAA chrX:16385980-16386100 21 4.66e-05 ATGTGTACAT AAATATTT GCCAAGTGCC chr3L:549005-549125 62 4.66e-05 CGACTTATAA AAATATTT CAGTTGTTGT chr2R:13437928-13438048 36 4.66e-05 GGTTTTTCTT AAATATTT ATAAAGGCCA chr3L:21859825-21859945 9 4.66e-05 AAGTTTAA AAATATTT TAATCATGTT chr2R:22312727-22312847 55 4.66e-05 TACCAATGTT AAATATTT GGACTTGATT chr2L:425644-425764 107 4.66e-05 TGCAAAAGCC AAATATTT ATCAGC chr3L:15814171-15814291 25 4.66e-05 AATTACATTA AAATATTT TATCAGCTGC chr3R:31758968-31759088 99 4.66e-05 TTAACCACCC AAATATTT ACCCATGTCA chr2L:10976817-10976937 13 4.66e-05 CAAAACGAGC AAATATTT GCAGTTTTCA chr3L:6706926-6707046 12 4.66e-05 GTGGAATGTA AAATATTT CATTGAAGTA chr3R:18296273-18296393 70 4.66e-05 ACACGCTAGC AAATATTT GATCGGCAAA chr2R:22387339-22387459 23 4.66e-05 CGAGTTGAAT AAATATTT GCCATACACG chr3L:11577564-11577684 58 4.66e-05 TCTTGAAGTC AAATATTT GTAATTCATA chr3L:15741920-15742040 45 4.66e-05 ACAGCTGGAC AAATATTT GATATTTAAT chr3L:3078948-3079068 40 8.20e-05 TTTCGTGTGT ACATATTT ACACACAATT chr2R:7011616-7011736 4 8.20e-05 AGC ACATATTT CACAAAAACG chr2R:23415282-23415402 49 8.20e-05 CAGCGCAGAT ACATATTT AGACAGTTCC chr2R:15515746-15515866 71 8.20e-05 AGATATAAGT ACATATTT CATATTCTCT chrX:8437178-8437298 109 1.16e-04 AAAAACCATT AAATATGT GTAA chr3R:30537001-30537121 81 1.16e-04 AATACAATCG AAATATGT TTATATAATT chr3R:31723252-31723372 58 1.41e-04 acatatatgt acatatgt gtgtatacgt chr3L:8058391-8058511 47 1.41e-04 GAAAACAGAT ACATATGT ACATAATGAA chr3L:13912910-13913030 17 1.41e-04 atatgtacaa acatatgt aGTAGCGTAT chrX:18082841-18082961 57 1.41e-04 TTGTTGATAT ACATATGT ATGTACATAG chr3R:9448456-9448576 68 1.41e-04 GGGCatatat acatatgt atatgtacac chr2R:10151187-10151307 52 1.41e-04 TGCGCATACA ACATATGT ACATAGAGTG chr3R:22756465-22756585 34 1.41e-04 CATAGGATAT ACATATGT ACATATGAGA chr2R:13940061-13940181 64 1.41e-04 gaatgtacat acatatgt atgtaAATAC chr2L:3755212-3755332 60 2.25e-04 GCACTGAAAC AAATTTTT GGTTAAATCA chrX:17627700-17627820 64 2.25e-04 CAATTTTTTT AAATTTTT TCTATTGCTT chr2L:7525375-7525495 103 2.25e-04 AAGCCAGTGT CAATATTT GGCCAAAGCT chr3R:12562176-12562296 80 2.25e-04 GCAAAGTAGC AAATTTTT TATAACCAAT chr2R:15802201-15802321 34 2.25e-04 GAACGAACAA CAATATTT ACAAATTCTT chrX:13089745-13089865 100 2.25e-04 GGTATTTATT AAATTTTT TTCGCCGTTT chr3R:11243247-11243367 55 2.25e-04 AACTATTCGA AAATTTTT AAAGCGGCGC chr3R:22518478-22518598 41 2.25e-04 GTGGGCGTGT CAATATTT GCTTTATTTA chrX:3282096-3282216 53 2.25e-04 AGTTGTTGCT CAATATTT GCATATTTGT chr2L:13158068-13158188 100 2.25e-04 CTTTATTAAA CAATATTT GGACTCTGCA chr3R:9646339-9646459 65 2.25e-04 GATAATATTT AAATTTTT CCAAAGAAGC chr2R:21648434-21648554 97 2.87e-04 GTTTTCCTTG CCATATTT GCTCAGTTTT chr3L:11253504-11253624 100 2.87e-04 ATTCGTCACT ACATTTTT ACACTCTATG chr2R:15155165-15155285 84 3.95e-04 TGTATAAACC ATATATTT TTGCCCACTG chr3L:11291604-11291724 94 3.95e-04 ATTTAGGTAA ATATATTT ACTAAAAATT chr2L:8719795-8719915 17 3.95e-04 ATTGTATACC AAATTTGT AGAGCGCCAT chr2L:16541739-16541859 100 3.95e-04 AATTTCCAAT AAATTTGT TTTTTTTTAA chr3R:9977662-9977782 6 3.95e-04 taaag atATATTT GAAGATACAC chr2R:7749750-7749870 54 3.95e-04 CTGTATCTAT ATATATTT ATATATGAAT chr3L:3931981-3932101 33 3.95e-04 GAATTTCCGA AAATTTGT TATGCTCCAC chr3R:12716422-12716542 111 4.41e-04 TGAAatacat ccatatgt ac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14569783-14569903 4.7e-05 67_[+5]_45 chrX:16385980-16386100 4.7e-05 20_[+5]_92 chr3L:549005-549125 4.7e-05 61_[+5]_51 chr2R:13437928-13438048 4.7e-05 35_[+5]_77 chr3L:21859825-21859945 4.7e-05 8_[+5]_104 chr2R:22312727-22312847 4.7e-05 54_[+5]_58 chr2L:425644-425764 4.7e-05 106_[+5]_6 chr3L:15814171-15814291 4.7e-05 24_[+5]_88 chr3R:31758968-31759088 4.7e-05 98_[+5]_14 chr2L:10976817-10976937 4.7e-05 12_[+5]_100 chr3L:6706926-6707046 4.7e-05 11_[+5]_101 chr3R:18296273-18296393 4.7e-05 69_[+5]_43 chr2R:22387339-22387459 4.7e-05 22_[+5]_90 chr3L:11577564-11577684 4.7e-05 57_[+5]_55 chr3L:15741920-15742040 4.7e-05 44_[+5]_68 chr3L:3078948-3079068 8.2e-05 39_[+5]_73 chr2R:7011616-7011736 8.2e-05 3_[+5]_109 chr2R:23415282-23415402 8.2e-05 48_[+5]_64 chr2R:15515746-15515866 8.2e-05 70_[+5]_42 chrX:8437178-8437298 0.00012 108_[+5]_4 chr3R:30537001-30537121 0.00012 80_[+5]_32 chr3R:31723252-31723372 0.00014 57_[+5]_55 chr3L:8058391-8058511 0.00014 46_[+5]_66 chr3L:13912910-13913030 0.00014 16_[+5]_96 chrX:18082841-18082961 0.00014 56_[+5]_56 chr3R:9448456-9448576 0.00014 67_[+5]_45 chr2R:10151187-10151307 0.00014 51_[+5]_61 chr3R:22756465-22756585 0.00014 33_[+5]_79 chr2R:13940061-13940181 0.00014 63_[+5]_49 chr2L:3755212-3755332 0.00022 59_[+5]_53 chrX:17627700-17627820 0.00022 63_[+5]_49 chr2L:7525375-7525495 0.00022 102_[+5]_10 chr3R:12562176-12562296 0.00022 79_[+5]_33 chr2R:15802201-15802321 0.00022 33_[+5]_79 chrX:13089745-13089865 0.00022 99_[+5]_13 chr3R:11243247-11243367 0.00022 54_[+5]_58 chr3R:22518478-22518598 0.00022 40_[+5]_72 chrX:3282096-3282216 0.00022 52_[+5]_60 chr2L:13158068-13158188 0.00022 99_[+5]_13 chr3R:9646339-9646459 0.00022 64_[+5]_48 chr2R:21648434-21648554 0.00029 96_[+5]_16 chr3L:11253504-11253624 0.00029 99_[+5]_13 chr2R:15155165-15155285 0.0004 83_[+5]_29 chr3L:11291604-11291724 0.0004 93_[+5]_19 chr2L:8719795-8719915 0.0004 16_[+5]_96 chr2L:16541739-16541859 0.0004 99_[+5]_13 chr3R:9977662-9977782 0.0004 5_[+5]_107 chr2R:7749750-7749870 0.0004 53_[+5]_59 chr3L:3931981-3932101 0.0004 32_[+5]_80 chr3R:12716422-12716542 0.00044 110_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATATTT width=8 seqs=50 chr3R:14569783-14569903 ( 68) AAATATTT 1 chrX:16385980-16386100 ( 21) AAATATTT 1 chr3L:549005-549125 ( 62) AAATATTT 1 chr2R:13437928-13438048 ( 36) AAATATTT 1 chr3L:21859825-21859945 ( 9) AAATATTT 1 chr2R:22312727-22312847 ( 55) AAATATTT 1 chr2L:425644-425764 ( 107) AAATATTT 1 chr3L:15814171-15814291 ( 25) AAATATTT 1 chr3R:31758968-31759088 ( 99) AAATATTT 1 chr2L:10976817-10976937 ( 13) AAATATTT 1 chr3L:6706926-6707046 ( 12) AAATATTT 1 chr3R:18296273-18296393 ( 70) AAATATTT 1 chr2R:22387339-22387459 ( 23) AAATATTT 1 chr3L:11577564-11577684 ( 58) AAATATTT 1 chr3L:15741920-15742040 ( 45) AAATATTT 1 chr3L:3078948-3079068 ( 40) ACATATTT 1 chr2R:7011616-7011736 ( 4) ACATATTT 1 chr2R:23415282-23415402 ( 49) ACATATTT 1 chr2R:15515746-15515866 ( 71) ACATATTT 1 chrX:8437178-8437298 ( 109) AAATATGT 1 chr3R:30537001-30537121 ( 81) AAATATGT 1 chr3R:31723252-31723372 ( 58) ACATATGT 1 chr3L:8058391-8058511 ( 47) ACATATGT 1 chr3L:13912910-13913030 ( 17) ACATATGT 1 chrX:18082841-18082961 ( 57) ACATATGT 1 chr3R:9448456-9448576 ( 68) ACATATGT 1 chr2R:10151187-10151307 ( 52) ACATATGT 1 chr3R:22756465-22756585 ( 34) ACATATGT 1 chr2R:13940061-13940181 ( 64) ACATATGT 1 chr2L:3755212-3755332 ( 60) AAATTTTT 1 chrX:17627700-17627820 ( 64) AAATTTTT 1 chr2L:7525375-7525495 ( 103) CAATATTT 1 chr3R:12562176-12562296 ( 80) AAATTTTT 1 chr2R:15802201-15802321 ( 34) CAATATTT 1 chrX:13089745-13089865 ( 100) AAATTTTT 1 chr3R:11243247-11243367 ( 55) AAATTTTT 1 chr3R:22518478-22518598 ( 41) CAATATTT 1 chrX:3282096-3282216 ( 53) CAATATTT 1 chr2L:13158068-13158188 ( 100) CAATATTT 1 chr3R:9646339-9646459 ( 65) AAATTTTT 1 chr2R:21648434-21648554 ( 97) CCATATTT 1 chr3L:11253504-11253624 ( 100) ACATTTTT 1 chr2R:15155165-15155285 ( 84) ATATATTT 1 chr3L:11291604-11291724 ( 94) ATATATTT 1 chr2L:8719795-8719915 ( 17) AAATTTGT 1 chr2L:16541739-16541859 ( 100) AAATTTGT 1 chr3R:9977662-9977782 ( 6) ATATATTT 1 chr2R:7749750-7749870 ( 54) ATATATTT 1 chr3L:3931981-3932101 ( 33) AAATTTGT 1 chr3R:12716422-12716542 ( 111) CCATATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2738 E= 1.8e+004 160 -62 -1229 -1229 113 48 -1229 -186 182 -1229 -1229 -1229 -1229 -1229 -1229 178 150 -1229 -1229 -54 -1229 -1229 -1229 178 -1229 -1229 41 131 -1229 -1229 -1229 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.8e+004 0.860000 0.140000 0.000000 0.000000 0.620000 0.300000 0.000000 0.080000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.280000 0.720000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-5 regular expression -------------------------------------------------------------------------------- A[AC]AT[AT]T[TG]T -------------------------------------------------------------------------------- Time 32.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8512513-8512633 9.24e-01 120 chr2R:6149492-6149612 3.37e-03 95_[+1(1.46e-05)]_17 chrX:13322583-13322703 5.22e-01 120 chr2L:1637992-1638112 2.59e-01 120 chr3R:4359731-4359851 7.22e-02 120 chr2R:9950279-9950399 3.58e-01 120 chr3L:21192081-21192201 1.09e-01 120 chr3R:9646339-9646459 4.51e-01 120 chr3R:29990770-29990890 3.21e-02 120 chr2R:19276441-19276561 1.26e-03 83_[+4(1.01e-05)]_29 chrX:8093526-8093646 1.21e-02 120 chr2R:15515746-15515866 1.99e-01 70_[+5(8.20e-05)]_42 chr3R:25870500-25870620 6.94e-01 120 chr2L:4928515-4928635 4.82e-01 120 chr3R:30537001-30537121 1.84e-01 120 chr3L:1969938-1970058 8.95e-01 120 chr3L:2254453-2254573 2.16e-02 120 chr2R:17918859-17918979 2.19e-01 120 chr3L:15741920-15742040 4.10e-02 44_[+5(4.66e-05)]_68 chr2R:21417154-21417274 3.79e-02 15_[+1(7.03e-05)]_97 chr3R:6766361-6766481 5.38e-02 120 chr2R:11192612-11192732 8.78e-01 120 chr2R:17343434-17343554 3.87e-01 120 chr3R:5696537-5696657 3.04e-03 21_[+1(4.97e-05)]_24_[+2(1.59e-05)]_\ 59 chr3L:11253504-11253624 5.89e-02 120 chr3L:3931981-3932101 5.02e-01 120 chr2L:17433370-17433490 8.65e-02 120 chr2R:16225495-16225615 2.66e-01 120 chrX:18657581-18657701 1.30e-01 91_[+4(2.35e-05)]_21 chr3R:28831354-28831474 2.33e-03 14_[+4(2.35e-05)]_98 chr3R:10131198-10131318 8.44e-03 46_[+4(1.01e-05)]_66 chr3L:11484602-11484722 9.84e-01 120 chr2R:24957459-24957579 9.75e-02 120 chr3R:19909327-19909447 3.48e-01 120 chr3R:12716422-12716542 1.37e-01 120 chr3L:2585667-2585787 9.92e-02 58_[+2(4.56e-05)]_54 chr2R:23415282-23415402 4.03e-02 48_[+5(8.20e-05)]_64 chr2R:13940061-13940181 7.63e-02 120 chr3L:19496876-19496996 1.64e-01 120 chr3L:12203814-12203934 9.49e-01 120 chrX:11812992-11813112 7.84e-01 120 chr3R:24102562-24102682 8.45e-01 120 chr3R:30198958-30199078 1.19e-01 13_[+4(1.01e-05)]_99 chr2L:8127068-8127188 3.43e-02 120 chrX:2642924-2643044 5.50e-02 82_[+2(4.56e-05)]_30 chrX:8437178-8437298 3.21e-01 120 chr3L:11577564-11577684 3.76e-02 57_[+5(4.66e-05)]_55 chr2R:7749750-7749870 3.66e-01 120 chr3R:26956720-26956840 3.06e-01 120 chr2R:18480471-18480591 9.55e-01 120 chrX:17579883-17580003 1.74e-01 120 chr3R:9977662-9977782 2.13e-01 120 chr3R:23297259-23297379 2.63e-01 120 chr2L:13158068-13158188 2.38e-01 120 chrX:15803300-15803420 7.57e-01 120 chr2R:18761680-18761800 2.37e-02 120 chr2R:12670126-12670246 9.23e-01 120 chr3R:25056399-25056519 3.49e-01 120 chr3L:21262468-21262588 7.45e-01 120 chr2R:24971753-24971873 2.56e-01 120 chr3R:4360710-4360830 2.68e-02 33_[+3(3.73e-05)]_79 chr3R:13382946-13383066 2.60e-01 120 chr2L:12494039-12494159 3.34e-01 120 chr3R:26182029-26182149 9.61e-01 120 chr2L:20824252-20824372 8.89e-01 120 chr2R:22387339-22387459 7.94e-02 22_[+5(4.66e-05)]_90 chr3L:3072163-3072283 6.93e-01 120 chr3L:17003654-17003774 7.45e-04 17_[+1(2.41e-05)]_95 chrX:8780857-8780977 1.07e-01 90_[+2(7.35e-05)]_22 chr2L:9509762-9509882 6.49e-01 120 chr3R:18296273-18296393 4.03e-02 69_[+5(4.66e-05)]_43 chr3R:22756465-22756585 3.92e-01 120 chr3R:19673136-19673256 6.60e-01 120 chr2R:10151187-10151307 2.73e-02 120 chr2L:16541739-16541859 6.05e-01 120 chrX:3282096-3282216 8.62e-04 12_[+1(3.93e-06)]_100 chr3R:15402799-15402919 9.56e-02 96_[+2(7.93e-05)]_16 chr3L:18020992-18021112 1.62e-01 120 chr2R:17108802-17108922 3.77e-01 120 chr3L:10747814-10747934 4.42e-01 120 chr3R:22518478-22518598 1.79e-04 17_[+2(4.32e-06)]_86_[+2(1.59e-05)]_\ 1 chrX:13281393-13281513 9.27e-01 120 chr3R:11243247-11243367 2.51e-01 120 chr3L:616326-616446 4.37e-01 120 chr2R:7745211-7745331 3.34e-02 98_[+2(4.32e-06)]_14 chr2R:17028012-17028132 8.41e-01 120 chr3L:6706926-6707046 1.67e-01 11_[+5(4.66e-05)]_60_[+5(4.66e-05)]_\ 33 chrX:13089745-13089865 2.71e-01 120 chr3L:8513430-8513550 2.29e-01 120 chr3R:26556058-26556178 2.75e-01 120 chr2R:21158452-21158572 1.71e-01 120 chr3L:8675113-8675233 1.79e-01 120 chr2L:85214-85334 7.07e-01 120 chr2L:12493210-12493330 7.33e-01 120 chr2R:18442785-18442905 2.12e-01 120 chr3R:9872656-9872776 2.54e-01 28_[+2(4.56e-05)]_84 chr3R:14472711-14472831 1.97e-01 120 chr3L:14804769-14804889 1.13e-01 120 chr3L:10679881-10680001 9.41e-01 120 chr2R:6245437-6245557 4.30e-01 120 chr3R:9952913-9953033 8.00e-01 120 chr3R:13802338-13802458 1.07e-01 120 chr2L:10976817-10976937 1.30e-02 12_[+5(4.66e-05)]_100 chr3L:17539066-17539186 9.67e-01 120 chrX:2642725-2642845 1.39e-02 5_[+2(3.35e-05)]_107 chr3R:16215152-16215272 2.90e-01 120 chr3L:3309102-3309222 8.83e-03 54_[+1(3.93e-06)]_58 chr3L:17652149-17652269 9.47e-01 120 chr3R:14290089-14290209 5.76e-01 120 chr2R:22390338-22390458 1.47e-02 86_[+3(6.67e-05)]_26 chr3R:5302257-5302377 8.74e-01 120 chr3L:8519311-8519431 7.76e-01 120 chr2L:14616077-14616197 4.24e-02 59_[+2(3.35e-05)]_53 chr2L:6448169-6448289 2.56e-02 33_[+1(3.15e-05)]_79 chr2R:9553552-9553672 1.05e-01 37_[+2(7.35e-05)]_75 chr2R:24684978-24685098 8.79e-01 120 chr2R:16669847-16669967 5.31e-01 120 chr3R:22636367-22636487 1.14e-01 92_[+4(1.01e-05)]_20 chr3R:9448456-9448576 5.36e-01 120 chr2L:7571860-7571980 7.29e-01 120 chr2L:5062978-5063098 2.83e-01 120 chr2R:23997250-23997370 8.33e-01 120 chr2L:7778408-7778528 6.86e-01 120 chr2R:21648434-21648554 4.64e-02 120 chr3L:9466634-9466754 9.95e-01 120 chr2L:5151566-5151686 4.63e-03 120 chr3R:18226431-18226551 2.51e-01 120 chr2R:19138057-19138177 4.22e-01 120 chr2R:9060111-9060231 5.04e-01 120 chr3R:17966146-17966266 7.65e-01 120 chr2L:1117028-1117148 6.05e-02 120 chr3R:29066436-29066556 9.15e-01 120 chr3R:25448871-25448991 6.70e-01 120 chr3R:20310870-20310990 7.62e-01 120 chr3R:31758968-31759088 2.01e-03 98_[+5(4.66e-05)]_14 chr3R:8938862-8938982 2.48e-03 7_[+3(5.59e-06)]_105 chr2L:9864337-9864457 2.38e-02 43_[+2(7.35e-05)]_69 chr3L:15814171-15814291 3.27e-02 24_[+5(4.66e-05)]_88 chr3R:5746798-5746918 6.94e-01 120 chr3L:3755775-3755895 8.61e-01 120 chr3L:8683898-8684018 1.45e-01 120 chr3L:3390621-3390741 4.61e-02 42_[+2(9.49e-05)]_70 chr2L:12719053-12719173 1.85e-01 120 chr2R:21193481-21193601 3.29e-02 120 chr2L:8719795-8719915 1.16e-01 120 chr3R:5032036-5032156 1.13e-01 120 chr2L:4829182-4829302 1.65e-01 5_[+2(7.93e-05)]_107 chr3R:12543059-12543179 7.22e-01 120 chr2L:9908632-9908752 1.73e-02 22_[+3(1.68e-05)]_90 chr2R:12174174-12174294 5.12e-01 120 chr3R:24105293-24105413 2.04e-03 41_[+2(4.56e-05)]_46_[+1(2.01e-05)]_\ 17 chr2R:7879166-7879286 9.88e-01 120 chr3R:12657088-12657208 2.41e-01 120 chr2L:425644-425764 1.14e-02 26_[+5(4.66e-05)]_63_[+4(2.35e-05)]_\ 1_[+5(4.66e-05)]_6 chr3L:21433877-21433997 8.28e-02 120 chr2R:22312727-22312847 2.52e-02 54_[+5(4.66e-05)]_58 chrX:13754608-13754728 2.35e-01 120 chr3L:14002583-14002703 9.99e-01 120 chr3R:17007448-17007568 9.96e-01 120 chr2R:21648187-21648307 5.32e-01 120 chr3R:16252065-16252185 1.20e-01 4_[+2(3.35e-05)]_108 chr2R:8952257-8952377 2.91e-03 27_[+1(3.15e-05)]_85 chr3R:30013341-30013461 5.07e-01 120 chr3L:11550480-11550600 9.53e-01 120 chr2L:8529149-8529269 6.72e-01 120 chr2R:22590686-22590806 1.79e-01 120 chrX:5664338-5664458 5.92e-04 38_[+3(1.11e-05)]_27_[+2(7.35e-05)]_\ 39 chr2R:5782813-5782933 1.35e-01 120 chr2R:15802201-15802321 3.16e-01 120 chr2R:11652463-11652583 2.19e-01 120 chrX:18082841-18082961 1.08e-01 120 chr3L:17001177-17001297 5.41e-03 49_[+1(9.35e-06)]_63 chr2L:21623775-21623895 9.08e-01 120 chrX:515852-515972 1.38e-01 38_[+4(2.35e-05)]_74 chr3R:5571160-5571280 8.76e-02 120 chr3R:27605821-27605941 2.66e-02 85_[+3(1.68e-05)]_27 chr2R:11192816-11192936 9.18e-02 120 chr3L:8741357-8741477 3.80e-01 120 chr2L:6794404-6794524 4.21e-01 120 chrX:11558571-11558691 4.90e-02 120 chr2R:18539976-18540096 1.16e-04 7_[+2(4.32e-06)]_40_[+3(5.59e-06)]_\ 57 chr2R:14487703-14487823 4.88e-01 120 chr2L:8088327-8088447 6.33e-01 120 chr2R:21659988-21660108 1.74e-01 120 chr3L:19907462-19907582 6.94e-04 49_[+3(1.11e-05)]_18_[+4(1.01e-05)]_\ 37 chr2L:10849793-10849913 2.33e-04 20_[+1(9.35e-06)]_42_[+3(6.67e-05)]_\ 42 chr3L:19132750-19132870 5.30e-04 4_[+3(5.59e-06)]_108 chr3L:629479-629599 3.36e-02 4_[+1(2.41e-05)]_108 chr3L:8525438-8525558 3.48e-01 120 chr3L:21859825-21859945 3.95e-01 8_[+5(4.66e-05)]_104 chr3L:15034449-15034569 8.66e-01 120 chrX:15710447-15710567 8.17e-02 29_[+2(7.35e-05)]_83 chr3L:7529630-7529750 2.80e-02 105_[+3(5.59e-06)]_7 chr2L:20840596-20840716 5.70e-01 120 chr2R:17477273-17477393 8.50e-01 120 chr2R:7049115-7049235 2.45e-02 48_[+1(3.93e-06)]_64 chr3L:20386189-20386309 5.94e-02 6_[+2(2.17e-05)]_7_[+2(7.35e-05)]_\ 91 chr2R:7758797-7758917 1.54e-01 120 chr3L:8347498-8347618 1.97e-02 55_[+3(6.67e-05)]_57 chr3R:7515929-7516049 3.41e-01 120 chr3R:13450439-13450559 1.42e-02 78_[+3(1.11e-05)]_34 chr3L:19924968-19925088 3.41e-01 120 chrX:3289124-3289244 2.46e-01 120 chr2R:24022222-24022342 5.62e-01 120 chr3L:13912910-13913030 1.26e-01 120 chr3R:26966890-26967010 3.17e-01 120 chr3L:11291604-11291724 7.75e-01 120 chr3R:9944581-9944701 1.67e-02 91_[+2(1.59e-05)]_21 chr2L:5977599-5977719 6.14e-03 81_[+1(2.01e-05)]_31 chr3L:16146715-16146835 9.65e-01 120 chr2R:7011616-7011736 3.10e-03 3_[+5(8.20e-05)]_9_[+2(4.32e-06)]_\ 92 chr3R:15290525-15290645 2.88e-02 56_[+1(1.46e-05)]_56 chr3R:12562176-12562296 6.06e-01 120 chr2R:14332399-14332519 4.30e-01 120 chr3L:17530042-17530162 3.83e-01 120 chr3R:11312536-11312656 4.73e-01 120 chr2R:13437928-13438048 4.54e-02 35_[+5(4.66e-05)]_77 chr3L:19635530-19635650 1.49e-01 120 chr2L:5096965-5097085 3.30e-01 120 chr3L:550555-550675 9.44e-01 120 chr3R:17526244-17526364 9.04e-01 120 chr3L:3035380-3035500 2.71e-01 120 chr3L:3078948-3079068 1.98e-03 39_[+5(8.20e-05)]_73 chr3R:30802266-30802386 8.71e-02 120 chr3L:8058391-8058511 4.32e-01 120 chr3R:31723252-31723372 2.03e-01 120 chr3R:25647705-25647825 3.61e-01 120 chr3L:549005-549125 8.28e-02 61_[+5(4.66e-05)]_51 chr3L:21349224-21349344 2.04e-01 120 chrX:16385980-16386100 5.46e-03 20_[+5(4.66e-05)]_42_[+2(3.35e-05)]_\ 42 chr2L:7525375-7525495 4.12e-03 111_[+4(1.01e-05)]_1 chr3L:4025859-4025979 1.16e-01 120 chr3R:11869328-11869448 3.76e-01 120 chr3L:4380392-4380512 3.95e-02 120 chr2L:3639932-3640052 2.38e-01 120 chr2L:18966977-18967097 9.95e-01 120 chr3R:4471193-4471313 3.67e-01 120 chr3R:18311075-18311195 2.97e-02 120 chr3R:26980498-26980618 1.65e-01 120 chrX:17627700-17627820 1.64e-01 120 chr2R:15155165-15155285 4.49e-01 120 chr2L:7940806-7940926 3.02e-02 120 chr3L:8060426-8060546 9.18e-01 120 chr2L:8543240-8543360 4.40e-01 120 chr3R:14479728-14479848 8.41e-01 120 chr3R:25275479-25275599 5.16e-01 120 chr3R:14569783-14569903 2.72e-01 67_[+5(4.66e-05)]_45 chrX:16573837-16573957 7.82e-01 120 chr3R:18243742-18243862 5.47e-02 120 chr2L:3755212-3755332 2.44e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************