******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6683.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:5670-5790 1.0000 120 chrM:12839-12959 1.0000 120 chrM:4699-4819 1.0000 120 chrM:5984-6104 1.0000 120 chrM:11264-11384 1.0000 120 chrM:12162-12282 1.0000 120 chrM:13106-13226 1.0000 120 chrM:2711-2831 1.0000 120 chrM:7445-7565 1.0000 120 chrM:10697-10817 1.0000 120 chrM:3519-3639 1.0000 120 chrM:5343-5463 1.0000 120 chr3L:17310644-17310764 1.0000 120 chrM:1757-1877 1.0000 120 chrM:8660-8780 1.0000 120 chrM:1982-2102 1.0000 120 chr3R:24007992-24008112 1.0000 120 chrX:18004379-18004499 1.0000 120 chrM:10900-11020 1.0000 120 chr3L:1868954-1869074 1.0000 120 chr3L:19087994-19088114 1.0000 120 chr3R:16214037-16214157 1.0000 120 chrX:4691338-4691458 1.0000 120 chr2R:23615238-23615358 1.0000 120 chr2R:15515777-15515897 1.0000 120 chrX:6439638-6439758 1.0000 120 chr3L:17113361-17113481 1.0000 120 chr3L:2913428-2913548 1.0000 120 chr3L:11107587-11107707 1.0000 120 chr3R:30235345-30235465 1.0000 120 chr2R:24746048-24746168 1.0000 120 chr2L:244032-244152 1.0000 120 chr2L:3938985-3939105 1.0000 120 chr3R:9083498-9083618 1.0000 120 chr3L:15923469-15923589 1.0000 120 chrX:7995278-7995398 1.0000 120 chr3R:17966143-17966263 1.0000 120 chrX:13208281-13208401 1.0000 120 chrX:11710408-11710528 1.0000 120 chrX:12073742-12073862 1.0000 120 chr3R:11243233-11243353 1.0000 120 chr2R:12679865-12679985 1.0000 120 chr3R:17049093-17049213 1.0000 120 chr3R:14709044-14709164 1.0000 120 chr2R:16770374-16770494 1.0000 120 chr3L:19845646-19845766 1.0000 120 chr3L:17459005-17459125 1.0000 120 chr2L:1043715-1043835 1.0000 120 chr2L:18481240-18481360 1.0000 120 chr2L:4973893-4974013 1.0000 120 chr2R:17272596-17272716 1.0000 120 chr3R:15117833-15117953 1.0000 120 chr2L:13206403-13206523 1.0000 120 chr3R:24474927-24475047 1.0000 120 chrX:14727635-14727755 1.0000 120 chr3L:9424611-9424731 1.0000 120 chr3L:16870850-16870970 1.0000 120 chr3L:4603625-4603745 1.0000 120 chr2R:22508165-22508285 1.0000 120 chr3R:28959273-28959393 1.0000 120 chr2R:12547696-12547816 1.0000 120 chr2R:17028053-17028173 1.0000 120 chr3R:21176734-21176854 1.0000 120 chr2R:15073112-15073232 1.0000 120 chr3L:11450654-11450774 1.0000 120 chrX:18125579-18125699 1.0000 120 chr3R:11590116-11590236 1.0000 120 chr2R:13909038-13909158 1.0000 120 chr2L:1048519-1048639 1.0000 120 chr2L:14141364-14141484 1.0000 120 chr2L:19121056-19121176 1.0000 120 chrX:21045659-21045779 1.0000 120 chr3L:3078932-3079052 1.0000 120 chr2L:18658244-18658364 1.0000 120 chr3L:12507790-12507910 1.0000 120 chr2R:22387345-22387465 1.0000 120 chr3R:17605131-17605251 1.0000 120 chr3R:14014238-14014358 1.0000 120 chr2R:7984212-7984332 1.0000 120 chr2L:19930243-19930363 1.0000 120 chr2R:18605495-18605615 1.0000 120 chrX:9202189-9202309 1.0000 120 chr2L:7628554-7628674 1.0000 120 chr3L:5182374-5182494 1.0000 120 chr3L:2734468-2734588 1.0000 120 chr2R:12951597-12951717 1.0000 120 chrX:16086249-16086369 1.0000 120 chrX:5664325-5664445 1.0000 120 chr2L:12549099-12549219 1.0000 120 chr2L:5977467-5977587 1.0000 120 chr3L:11528607-11528727 1.0000 120 chr3L:15275586-15275706 1.0000 120 chrX:17694936-17695056 1.0000 120 chr2R:22312694-22312814 1.0000 120 chr3R:7892811-7892931 1.0000 120 chr2L:18966977-18967097 1.0000 120 chrX:966930-967050 1.0000 120 chr3R:15367005-15367125 1.0000 120 chr3L:19263582-19263702 1.0000 120 chr3R:30325593-30325713 1.0000 120 chr3R:9784472-9784592 1.0000 120 chr2R:14136871-14136991 1.0000 120 chr2L:117896-118016 1.0000 120 chr2R:21895087-21895207 1.0000 120 chr2L:20808390-20808510 1.0000 120 chr3R:14875775-14875895 1.0000 120 chr2R:19414722-19414842 1.0000 120 chr2L:18548845-18548965 1.0000 120 chr2L:9509781-9509901 1.0000 120 chr3R:18296268-18296388 1.0000 120 chr2R:19449817-19449937 1.0000 120 chr3L:19073313-19073433 1.0000 120 chr2R:14275550-14275670 1.0000 120 chr2R:6153305-6153425 1.0000 120 chr3R:30198953-30199073 1.0000 120 chr3L:4521966-4522086 1.0000 120 chr3L:2845294-2845414 1.0000 120 chrX:10573663-10573783 1.0000 120 chr2L:4133128-4133248 1.0000 120 chr2L:2872662-2872782 1.0000 120 chr2R:15480309-15480429 1.0000 120 chr2R:18435201-18435321 1.0000 120 chr2L:1094803-1094923 1.0000 120 chr3L:1151825-1151945 1.0000 120 chrX:17294293-17294413 1.0000 120 chr2R:23740428-23740548 1.0000 120 chrX:18094906-18095026 1.0000 120 chr2R:11178516-11178636 1.0000 120 chr3R:25168328-25168448 1.0000 120 chr2R:15154965-15155085 1.0000 120 chr2R:18356384-18356504 1.0000 120 chr2R:7879048-7879168 1.0000 120 chrX:21322808-21322928 1.0000 120 chr3R:12401749-12401869 1.0000 120 chr3L:8509908-8510028 1.0000 120 chr2L:1619304-1619424 1.0000 120 chrX:17293516-17293636 1.0000 120 chr2L:16647861-16647981 1.0000 120 chr3L:10893417-10893537 1.0000 120 chr2L:11203746-11203866 1.0000 120 chr3L:8347500-8347620 1.0000 120 chr3R:16476594-16476714 1.0000 120 chrX:13570405-13570525 1.0000 120 chr3R:9550601-9550721 1.0000 120 chr3L:797076-797196 1.0000 120 chr3L:8689829-8689949 1.0000 120 chr2R:16848469-16848589 1.0000 120 chr3L:11291589-11291709 1.0000 120 chr2R:15155195-15155315 1.0000 120 chr3L:17003649-17003769 1.0000 120 chr3L:19091919-19092039 1.0000 120 chr2L:2165943-2166063 1.0000 120 chr3L:13903371-13903491 1.0000 120 chr2L:9493423-9493543 1.0000 120 chr2R:12454309-12454429 1.0000 120 chr3L:11070519-11070639 1.0000 120 chr2R:12140425-12140545 1.0000 120 chr3L:13044449-13044569 1.0000 120 chr3L:21412295-21412415 1.0000 120 chr2L:1837828-1837948 1.0000 120 chr3R:5300776-5300896 1.0000 120 chrX:13789027-13789147 1.0000 120 chr3R:21629809-21629929 1.0000 120 chr2L:5196833-5196953 1.0000 120 chr3R:4821218-4821338 1.0000 120 chr3R:14479719-14479839 1.0000 120 chr3R:5746806-5746926 1.0000 120 chr2L:4829173-4829293 1.0000 120 chr3R:7821655-7821775 1.0000 120 chr3L:16045496-16045616 1.0000 120 chr2R:14109827-14109947 1.0000 120 chr2L:9564637-9564757 1.0000 120 chr3R:30802301-30802421 1.0000 120 chr2R:13429999-13430119 1.0000 120 chr3R:26105962-26106082 1.0000 120 chr3L:708079-708199 1.0000 120 chr2L:20715186-20715306 1.0000 120 chrX:2274950-2275070 1.0000 120 chr2L:13205391-13205511 1.0000 120 chr3R:28556520-28556640 1.0000 120 chr2R:19127963-19128083 1.0000 120 chr2L:5325073-5325193 1.0000 120 chrX:6800974-6801094 1.0000 120 chrX:11885542-11885662 1.0000 120 chr2R:22657335-22657455 1.0000 120 chr3L:16052564-16052684 1.0000 120 chr3L:10362880-10363000 1.0000 120 chr2L:10760728-10760848 1.0000 120 chr2R:8002331-8002451 1.0000 120 chr3R:18311115-18311235 1.0000 120 chr2L:20911531-20911651 1.0000 120 chr3R:6760961-6761081 1.0000 120 chr2L:21096551-21096671 1.0000 120 chr3R:13644818-13644938 1.0000 120 chrX:18524886-18525006 1.0000 120 chrX:8542118-8542238 1.0000 120 chr3L:11049547-11049667 1.0000 120 chrX:7935997-7936117 1.0000 120 chr3L:9505614-9505734 1.0000 120 chr2R:23578564-23578684 1.0000 120 chr3L:3932857-3932977 1.0000 120 chrX:13764560-13764680 1.0000 120 chrX:12937932-12938052 1.0000 120 chr3L:629498-629618 1.0000 120 chr3L:8604429-8604549 1.0000 120 chrX:2591744-2591864 1.0000 120 chr3L:9505410-9505530 1.0000 120 chr2L:5096892-5097012 1.0000 120 chr2R:6133384-6133504 1.0000 120 chr2R:23964849-23964969 1.0000 120 chr2R:10196349-10196469 1.0000 120 chr2R:24028443-24028563 1.0000 120 chr2L:10250003-10250123 1.0000 120 chr3R:12720076-12720196 1.0000 120 chr2L:19141031-19141151 1.0000 120 chr3R:5636880-5637000 1.0000 120 chr2R:7735159-7735279 1.0000 120 chrX:6614425-6614545 1.0000 120 chr3L:12269989-12270109 1.0000 120 chr3R:20833134-20833254 1.0000 120 chr2R:10854239-10854359 1.0000 120 chr3L:11540380-11540500 1.0000 120 chr2R:24657156-24657276 1.0000 120 chr2L:2374168-2374288 1.0000 120 chrX:16655890-16656010 1.0000 120 chr3L:21130954-21131074 1.0000 120 chr3R:23919513-23919633 1.0000 120 chr3R:15250607-15250727 1.0000 120 chr3L:17655984-17656104 1.0000 120 chr3R:22494642-22494762 1.0000 120 chr2L:12372551-12372671 1.0000 120 chrX:3811368-3811488 1.0000 120 chr2L:12721116-12721236 1.0000 120 chr3L:15814158-15814278 1.0000 120 chr2R:7748207-7748327 1.0000 120 chr2L:21037863-21037983 1.0000 120 chrX:21375704-21375824 1.0000 120 chr2L:6357068-6357188 1.0000 120 chr2L:12463147-12463267 1.0000 120 chr3L:10866771-10866891 1.0000 120 chr2R:13008208-13008328 1.0000 120 chr3L:13905626-13905746 1.0000 120 chr3R:16213107-16213227 1.0000 120 chr2L:9763409-9763529 1.0000 120 chr2L:16727670-16727790 1.0000 120 chr2L:1142817-1142937 1.0000 120 chr3L:554785-554905 1.0000 120 chr2R:16832859-16832979 1.0000 120 chr2L:22144319-22144439 1.0000 120 chr3R:4714113-4714233 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG6683/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6683.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.33 C 0.173 G 0.17 T 0.327 Background letter frequencies (from file dataset with add-one prior applied): A 0.33 C 0.173 G 0.17 T 0.327 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCSRGYKG MEME-1 width = 8 sites = 30 llr = 270 E-value = 1.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSRGYKG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C 296226:: probability G 81458:5a matrix T :::::45: bits 2.6 * 2.3 * 2.0 * * 1.8 ** * * Relative 1.5 *** * * Entropy 1.3 *** * * (13.0 bits) 1.0 *** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCGGCGG consensus C GA TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSRGYKG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13429999-13430119 20 1.46e-06 TTTTGTATTA GCGGGCGG CGGTTGGTTG chr3L:11070519-11070639 63 2.87e-06 AACAACGCTC GCCGGCTG CAGTTGGAAA chr3R:4821218-4821338 19 4.26e-06 TCCATTGTGT GCCGGTGG AACGAACGAC chr3L:19091919-19092039 92 4.26e-06 AATGTGGGTG GCCGGTGG GCCGAAGGTT chr3R:4714113-4714233 80 7.76e-06 TATCGATAGT GCGGGTGG GGGTTGATGG chr3L:12507790-12507910 43 9.19e-06 TGGCAGTAAT GCCAGCGG AGAGCACGAT chrX:5664325-5664445 52 1.55e-05 TTCAACGGGA GCGAGCGG AAGTGCGCAG chr2L:5096892-5097012 22 2.10e-05 GAGGAAGAGC GCCCGCTG CTCTCCGTGG chr3L:8347500-8347620 54 2.38e-05 GTTGCCCAAC GCCAGCTG TGCACACAAC chr3R:5300776-5300896 41 2.52e-05 GCCAGGTGTC GCCCGTGG AGCGGCAGCA chr3L:17655984-17656104 66 3.07e-05 AAGGAAAGTT CCCGGCTG AGGCAACAAA chr3L:8689829-8689949 1 3.07e-05 . CCCGGCTG CGaaaaaaaa chrX:17294293-17294413 33 3.07e-05 acaatacaac GCGCGCTG ATTAAACGTG chr3R:17605131-17605251 33 3.07e-05 GTGTTCCTGT GCCAGTGG TTGTCAGTGC chr2R:10854239-10854359 66 3.56e-05 TACTACTTCC GCGAGCTG TCCAAAAAAT chr2R:11178516-11178636 48 3.56e-05 CCAAGATGAA GCGAGCTG AGGATACCCC chr2R:23740428-23740548 102 3.56e-05 ACACCCGCCA GCCGCCTG CCGACCGCCG chr2L:5196833-5196953 9 4.39e-05 TAACTTGG CCGGGCTG TGTTTGTGTC chr3L:17003649-17003769 23 4.60e-05 GGGGGGTAGC GGGGGCGG GGCACTCGCT chr3R:30802301-30802421 51 4.82e-05 CATATGGATC CCGGGTGG GTAAACATCT chrX:7935997-7936117 79 5.45e-05 AACTAGCTGG CCCAGCGG TTCATTTATC chr2R:18356384-18356504 97 5.45e-05 CACATACACA GCGGCTGG CAGTGCgagc chr3L:11528607-11528727 59 5.45e-05 ACCCAACGCC GCCCGTTG TGCCCGCACG chr3L:10362880-10363000 17 7.16e-05 AAAGTCGTGT GCGCgttg ttgttgtgtt chr2L:13205391-13205511 69 7.16e-05 ACTGTGGCTG CCCGCCGG TCGTCCGTCC chr2R:7735159-7735279 11 8.22e-05 GCGGGCGAGG GGCGGTGG GTGGTAGGCG chr3L:19073313-19073433 29 8.22e-05 CAGTGTGTGC GGCGGTGG GTAAACGACG chr2R:22387345-22387465 6 8.22e-05 GCCCA GCGAGTTG AATAAATATT chr2R:15480309-15480429 71 9.75e-05 ATAACGCTCG GCGGCTTG TTGTGCTAGC chr2R:16832859-16832979 79 1.03e-04 TCCAGCGAGT GCCACCTG GCAAACAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSRGYKG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13429999-13430119 1.5e-06 19_[+1]_93 chr3L:11070519-11070639 2.9e-06 62_[+1]_50 chr3R:4821218-4821338 4.3e-06 18_[+1]_94 chr3L:19091919-19092039 4.3e-06 91_[+1]_21 chr3R:4714113-4714233 7.8e-06 79_[+1]_33 chr3L:12507790-12507910 9.2e-06 42_[+1]_70 chrX:5664325-5664445 1.5e-05 51_[+1]_61 chr2L:5096892-5097012 2.1e-05 21_[+1]_91 chr3L:8347500-8347620 2.4e-05 53_[+1]_59 chr3R:5300776-5300896 2.5e-05 40_[+1]_72 chr3L:17655984-17656104 3.1e-05 65_[+1]_47 chr3L:8689829-8689949 3.1e-05 [+1]_112 chrX:17294293-17294413 3.1e-05 32_[+1]_80 chr3R:17605131-17605251 3.1e-05 32_[+1]_80 chr2R:10854239-10854359 3.6e-05 65_[+1]_47 chr2R:11178516-11178636 3.6e-05 47_[+1]_65 chr2R:23740428-23740548 3.6e-05 101_[+1]_11 chr2L:5196833-5196953 4.4e-05 8_[+1]_104 chr3L:17003649-17003769 4.6e-05 22_[+1]_90 chr3R:30802301-30802421 4.8e-05 50_[+1]_62 chrX:7935997-7936117 5.4e-05 78_[+1]_34 chr2R:18356384-18356504 5.4e-05 96_[+1]_16 chr3L:11528607-11528727 5.4e-05 58_[+1]_54 chr3L:10362880-10363000 7.2e-05 16_[+1]_96 chr2L:13205391-13205511 7.2e-05 68_[+1]_44 chr2R:7735159-7735279 8.2e-05 10_[+1]_102 chr3L:19073313-19073433 8.2e-05 28_[+1]_84 chr2R:22387345-22387465 8.2e-05 5_[+1]_107 chr2R:15480309-15480429 9.7e-05 70_[+1]_42 chr2R:16832859-16832979 0.0001 78_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSRGYKG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSRGYKG width=8 seqs=30 chr2R:13429999-13430119 ( 20) GCGGGCGG 1 chr3L:11070519-11070639 ( 63) GCCGGCTG 1 chr3R:4821218-4821338 ( 19) GCCGGTGG 1 chr3L:19091919-19092039 ( 92) GCCGGTGG 1 chr3R:4714113-4714233 ( 80) GCGGGTGG 1 chr3L:12507790-12507910 ( 43) GCCAGCGG 1 chrX:5664325-5664445 ( 52) GCGAGCGG 1 chr2L:5096892-5097012 ( 22) GCCCGCTG 1 chr3L:8347500-8347620 ( 54) GCCAGCTG 1 chr3R:5300776-5300896 ( 41) GCCCGTGG 1 chr3L:17655984-17656104 ( 66) CCCGGCTG 1 chr3L:8689829-8689949 ( 1) CCCGGCTG 1 chrX:17294293-17294413 ( 33) GCGCGCTG 1 chr3R:17605131-17605251 ( 33) GCCAGTGG 1 chr2R:10854239-10854359 ( 66) GCGAGCTG 1 chr2R:11178516-11178636 ( 48) GCGAGCTG 1 chr2R:23740428-23740548 ( 102) GCCGCCTG 1 chr2L:5196833-5196953 ( 9) CCGGGCTG 1 chr3L:17003649-17003769 ( 23) GGGGGCGG 1 chr3R:30802301-30802421 ( 51) CCGGGTGG 1 chrX:7935997-7936117 ( 79) CCCAGCGG 1 chr2R:18356384-18356504 ( 97) GCGGCTGG 1 chr3L:11528607-11528727 ( 59) GCCCGTTG 1 chr3L:10362880-10363000 ( 17) GCGCGTTG 1 chr2L:13205391-13205511 ( 69) CCCGCCGG 1 chr2R:7735159-7735279 ( 11) GGCGGTGG 1 chr3L:19073313-19073433 ( 29) GGCGGTGG 1 chr2R:22387345-22387465 ( 6) GCGAGTTG 1 chr2R:15480309-15480429 ( 71) GCGGCTTG 1 chr2R:16832859-16832979 ( 79) GCCACCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSRGYKG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 1.1e-001 -1155 21 224 -1155 -1155 238 -76 -1155 -1155 171 135 -1155 -14 -5 165 -1155 -1155 -5 230 -1155 -1155 171 -1155 41 -1155 -1155 156 61 -1155 -1155 256 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSRGYKG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.1e-001 0.000000 0.200000 0.800000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.566667 0.433333 0.000000 0.300000 0.166667 0.533333 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.566667 0.000000 0.433333 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSRGYKG MEME-1 regular expression -------------------------------------------------------------------------------- [GC]C[CG][GA]G[CT][GT]G -------------------------------------------------------------------------------- Time 7.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGYNGC MEME-2 width = 8 sites = 38 llr = 318 E-value = 5.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGYNGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3::2:2 pos.-specific C :a::6327 probability G a:2a:381 matrix T ::6:43:: bits 2.6 ** * 2.3 ** * 2.0 ** * 1.8 ** * * Relative 1.5 ** * * Entropy 1.3 ** * * (12.1 bits) 1.0 ** ** ** 0.8 ** ** ** 0.5 ** ** ** 0.3 ******** 0.0 -------- Multilevel GCTGCGGC consensus A TTCA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGYNGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2274950-2275070 87 7.74e-06 agaagaacaa gcagcggc acacgaagaa chr3L:13044449-13044569 19 7.74e-06 TGCTCAGTGG GCTGCTGC TTCTGCTGCA chr3L:8689829-8689949 78 7.74e-06 aaacaaacaa GCTGCTGC TTCTAGTTAT chrX:5664325-5664445 14 7.74e-06 AGCACTGAGA GCAGCGGC CTGGAGCAAA chr3L:12507790-12507910 98 7.74e-06 GACATTGAAA GCTGCTGC CGAAAAGCTG chr2L:13206403-13206523 54 1.53e-05 CGTCGGCGTT GCTGTCGC TGGTGTTGTC chr3L:16052564-16052684 58 2.09e-05 AAAAAAACAA GCGGCTGC TAAAATGCCC chr3L:11049547-11049667 71 2.51e-05 ATCCGATAAG GCTGCCCC AATATCAACC chrM:5343-5463 104 2.51e-05 TGGTTTTGAA GCAGCTGC ATGATATTG chr2L:21037863-21037983 9 3.44e-05 TGCCACCA GCAGTGGC GGCGCTTGTT chr3R:12401749-12401869 103 3.44e-05 ACTCAAATCA GCTGTTGC TCGCCAAACA chr3L:3078932-3079052 104 3.44e-05 TTTCGTAGTG GCTGTTGC CATTGCTAG chr3L:708079-708199 75 3.58e-05 GAAAATATGT GCGGTCGC ACGTGTTTAA chr3L:8347500-8347620 75 3.58e-05 ACACAACGTC GCGGTCGC TCCACTATTG chr3L:19091919-19092039 21 4.34e-05 CAGCGTCCAA GCTGCGGA TACACACGGA chrX:14727635-14727755 10 4.34e-05 GGCACAGAG GCAGTCGC ACAGCAGCGG chr3R:20833134-20833254 49 4.90e-05 CATTTTAATA GCAGCGCC CCAAGAAAAC chr3R:5300776-5300896 50 4.90e-05 CGCCCGTGGA GCGGCAGC AACGGTATAA chr2R:22312694-22312814 48 4.90e-05 CGCCATGTAT GCGGCAGC TGAGTGGCAA chr2L:6357068-6357188 79 5.67e-05 TTGCGTTTCA GCTGCCGG AAGATAGATG chrX:7935997-7936117 32 5.67e-05 GAACGCAGAG GCAGCAGC TAAAGGGCCA chr3R:18296268-18296388 106 5.67e-05 GGCGCTCTAA GCAGCAGC AGTCTTA chr2R:23964849-23964969 95 6.09e-05 ACGCGGAGAC GCTGTGCC AATCCTACGG chr3L:13903371-13903491 24 7.67e-05 TCTCGCGTAT GCTGTCCC TACACAACAA chr2L:2165943-2166063 111 9.51e-05 ACTTTTAGAC GCTGCTGA GC chrM:3519-3639 29 9.51e-05 TTTAGTAACA GCTGCTGA TGTTATTCAT chrX:6614425-6614545 72 1.13e-04 GTATCTTTTC GCTGTGGG CGTAAACACA chr3L:19845646-19845766 90 1.13e-04 TTCACCTACA GCTGTGGA ATATGTTTGA chr2L:244032-244152 65 1.24e-04 AATTTTTCTT GCAGTGCC AAATTGTGTT chr3L:629498-629618 23 1.39e-04 CAGTCAGACC GCTGTCGA CAAATAAAAC chr3R:4714113-4714233 34 1.47e-04 ATTCAGCCAC GCTGCGCG TATGTTTTAG chr2R:23615238-23615358 27 1.47e-04 CAATAGTCAC GCAGTCCC GAGTAAACAA chr2L:10250003-10250123 40 1.60e-04 GCTCGTTTGC GCTGCAGA TAATAAAGCG chrM:7445-7565 70 1.60e-04 AGCAGCTATA GCTGCAGG TAACCAAGAA chr2L:4829173-4829293 15 1.77e-04 ACTGGCCTCA GCTGGCGC AGACACTGCG chrM:10900-11020 106 2.11e-04 AGGTGGATTT GCTGTTGA TAATGCC chrX:2591744-2591864 99 2.21e-04 CAAGATCGGC GCAGTTCC CTGCCAGTTA chr3R:11243233-11243353 80 2.32e-04 AATTTTTAAA GCGGCGCA TTTTACTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGYNGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2274950-2275070 7.7e-06 86_[+2]_26 chr3L:13044449-13044569 7.7e-06 18_[+2]_94 chr3L:8689829-8689949 7.7e-06 77_[+2]_35 chrX:5664325-5664445 7.7e-06 13_[+2]_99 chr3L:12507790-12507910 7.7e-06 97_[+2]_15 chr2L:13206403-13206523 1.5e-05 53_[+2]_59 chr3L:16052564-16052684 2.1e-05 57_[+2]_55 chr3L:11049547-11049667 2.5e-05 70_[+2]_42 chrM:5343-5463 2.5e-05 103_[+2]_9 chr2L:21037863-21037983 3.4e-05 8_[+2]_104 chr3R:12401749-12401869 3.4e-05 102_[+2]_10 chr3L:3078932-3079052 3.4e-05 103_[+2]_9 chr3L:708079-708199 3.6e-05 74_[+2]_38 chr3L:8347500-8347620 3.6e-05 74_[+2]_38 chr3L:19091919-19092039 4.3e-05 20_[+2]_92 chrX:14727635-14727755 4.3e-05 9_[+2]_103 chr3R:20833134-20833254 4.9e-05 48_[+2]_64 chr3R:5300776-5300896 4.9e-05 49_[+2]_63 chr2R:22312694-22312814 4.9e-05 47_[+2]_65 chr2L:6357068-6357188 5.7e-05 78_[+2]_34 chrX:7935997-7936117 5.7e-05 31_[+2]_81 chr3R:18296268-18296388 5.7e-05 105_[+2]_7 chr2R:23964849-23964969 6.1e-05 94_[+2]_18 chr3L:13903371-13903491 7.7e-05 23_[+2]_89 chr2L:2165943-2166063 9.5e-05 110_[+2]_2 chrM:3519-3639 9.5e-05 28_[+2]_84 chrX:6614425-6614545 0.00011 71_[+2]_41 chr3L:19845646-19845766 0.00011 89_[+2]_23 chr2L:244032-244152 0.00012 64_[+2]_48 chr3L:629498-629618 0.00014 22_[+2]_90 chr3R:4714113-4714233 0.00015 33_[+2]_79 chr2R:23615238-23615358 0.00015 26_[+2]_86 chr2L:10250003-10250123 0.00016 39_[+2]_73 chrM:7445-7565 0.00016 69_[+2]_43 chr2L:4829173-4829293 0.00018 14_[+2]_98 chrM:10900-11020 0.00021 105_[+2]_7 chrX:2591744-2591864 0.00022 98_[+2]_14 chr3R:11243233-11243353 0.00023 79_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGYNGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGYNGC width=8 seqs=38 chrX:2274950-2275070 ( 87) GCAGCGGC 1 chr3L:13044449-13044569 ( 19) GCTGCTGC 1 chr3L:8689829-8689949 ( 78) GCTGCTGC 1 chrX:5664325-5664445 ( 14) GCAGCGGC 1 chr3L:12507790-12507910 ( 98) GCTGCTGC 1 chr2L:13206403-13206523 ( 54) GCTGTCGC 1 chr3L:16052564-16052684 ( 58) GCGGCTGC 1 chr3L:11049547-11049667 ( 71) GCTGCCCC 1 chrM:5343-5463 ( 104) GCAGCTGC 1 chr2L:21037863-21037983 ( 9) GCAGTGGC 1 chr3R:12401749-12401869 ( 103) GCTGTTGC 1 chr3L:3078932-3079052 ( 104) GCTGTTGC 1 chr3L:708079-708199 ( 75) GCGGTCGC 1 chr3L:8347500-8347620 ( 75) GCGGTCGC 1 chr3L:19091919-19092039 ( 21) GCTGCGGA 1 chrX:14727635-14727755 ( 10) GCAGTCGC 1 chr3R:20833134-20833254 ( 49) GCAGCGCC 1 chr3R:5300776-5300896 ( 50) GCGGCAGC 1 chr2R:22312694-22312814 ( 48) GCGGCAGC 1 chr2L:6357068-6357188 ( 79) GCTGCCGG 1 chrX:7935997-7936117 ( 32) GCAGCAGC 1 chr3R:18296268-18296388 ( 106) GCAGCAGC 1 chr2R:23964849-23964969 ( 95) GCTGTGCC 1 chr3L:13903371-13903491 ( 24) GCTGTCCC 1 chr2L:2165943-2166063 ( 111) GCTGCTGA 1 chrM:3519-3639 ( 29) GCTGCTGA 1 chrX:6614425-6614545 ( 72) GCTGTGGG 1 chr3L:19845646-19845766 ( 90) GCTGTGGA 1 chr2L:244032-244152 ( 65) GCAGTGCC 1 chr3L:629498-629618 ( 23) GCTGTCGA 1 chr3R:4714113-4714233 ( 34) GCTGCGCG 1 chr2R:23615238-23615358 ( 27) GCAGTCCC 1 chr2L:10250003-10250123 ( 40) GCTGCAGA 1 chrM:7445-7565 ( 70) GCTGCAGG 1 chr2L:4829173-4829293 ( 15) GCTGGCGC 1 chrM:10900-11020 ( 106) GCTGTTGA 1 chrX:2591744-2591864 ( 99) GCAGTTCC 1 chr3R:11243233-11243353 ( 80) GCGGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGYNGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4344 E= 5.5e+001 -1189 -1189 256 -1189 -1189 253 -1189 -1189 -19 -1189 -10 76 -1189 -1189 256 -1189 -1189 167 -269 37 -106 60 77 -18 -1189 45 217 -1189 -65 198 -69 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGYNGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 5.5e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.289474 0.000000 0.157895 0.552632 0.000000 0.000000 1.000000 0.000000 0.000000 0.552632 0.026316 0.421053 0.157895 0.263158 0.289474 0.289474 0.000000 0.236842 0.763158 0.000000 0.210526 0.684211 0.105263 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGYNGC MEME-2 regular expression -------------------------------------------------------------------------------- GC[TA]G[CT][GTC][GC][CA] -------------------------------------------------------------------------------- Time 14.27 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCCASCC MEME-3 width = 8 sites = 33 llr = 283 E-value = 6.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCCASCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::6:11 pos.-specific C ::a82478 probability G 1a:2:521 matrix T 9:::21:: bits 2.6 ** 2.3 ** 2.0 ** 1.8 *** Relative 1.5 *** * Entropy 1.3 **** ** (12.4 bits) 1.0 **** *** 0.8 **** *** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCCAGCC consensus CCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCASCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4973893-4974013 77 2.79e-06 CAACCCTGGC TGCCAGCC ATTCACATAC chr2R:12454309-12454429 92 7.10e-06 AGCCCTGCCC TGCCACCC CCCACCTGTT chr3L:11528607-11528727 41 7.10e-06 ATTATAATTA TGCCACCC ACCCAACGCC chr2L:2165943-2166063 83 8.59e-06 TTCCCCGCAA TGCCCCCC CTTTACCAAC chr2L:1094803-1094923 77 8.59e-06 TTGCACTGTT TGCCCCCC CTCCTCCCCC chr2L:244032-244152 19 1.13e-05 CTTATCGTCC TGCCAGGC AGTAAATATG chrX:18004379-18004499 51 1.41e-05 TTTAGTAACT TGCCTGCC TAATAATATT chr2L:5977467-5977587 23 1.83e-05 TCGGGATGCG TGCCCGGC TTGATTTTTT chr2R:24657156-24657276 96 2.39e-05 CGTTGATTTA TGCCTCCC TCTTTTTCTC chr2R:7984212-7984332 74 2.39e-05 GGTGAGAGAC TGCCTCCC ACTCGCACAC chrX:16655890-16656010 80 2.68e-05 AACCGTGTTG TGCCCCGC TCAACATGTT chrX:7935997-7936117 45 3.33e-05 GCAGCTAAAG GGCCACCC ATGCACCAAA chr3L:8509908-8510028 68 3.33e-05 TGGCACATGC GGCCACCC TAATAAACCT chr3L:19091919-19092039 8 4.29e-05 CGCATTA TGCCAGCG TCCAAGCTGC chr2R:7879048-7879168 37 4.29e-05 CAATGGCATT TGCCATCC AATTAAATGT chr3L:4521966-4522086 10 4.29e-05 TCTTGGCCT TGCCATCC GGCTCAACTG chr2L:7628554-7628674 82 4.64e-05 AATAAGTAAT TGCCTGGC ACCTCGGTAA chr3R:9784472-9784592 34 5.34e-05 GCTTTTGTTC TGCCCGCG AAGAATTGGT chr2L:1142817-1142937 51 6.42e-05 TGCAATTGAA TGCGAGGC ACATGAAATT chr2R:17272596-17272716 25 6.42e-05 AAAATTCAGA TGCCAGCA CAGCTGCCTT chr3L:17113361-17113481 80 6.42e-05 CCAGCTTTTT TGCCAGCA CATTAAATTA chr2L:20911531-20911651 104 7.51e-05 CGTGTCCACT TGCGTGCC AGTGTCTGT chr2R:13429999-13430119 36 7.51e-05 GGCGGTTGGT TGCCAGAC CGCGGAAAGT chr3R:11590116-11590236 63 7.51e-05 TGCACGGTGT TGCCAGAC CAAGAAAGTG chr2L:21037863-21037983 1 8.90e-05 . TGCCACCA GCAGTGGCGG chr3L:16052564-16052684 71 8.90e-05 GCTGCTAAAA TGCCCGCA AGTGTTTTTA chr2L:4829173-4829293 112 8.90e-05 GTCGGACGGA TGCGCGGC A chr3L:21412295-21412415 25 1.02e-04 ATTTACCTAA TGCCACAC GATCAATATT chr3L:13044449-13044569 88 1.02e-04 GCGAACATTG TGCGTCCC CGGATCAGAA chr2L:1837828-1837948 83 1.17e-04 ATATGTTTCT TGCCATGC AAAGACGAAC chr3L:3932857-3932977 86 1.38e-04 AATGTACCTT GGCGACCC TGACAGGCGA chr3R:14709044-14709164 71 1.38e-04 TTAAATTATT TGCCCTGC TTCTGGCGAC chr2R:18356384-18356504 108 1.54e-04 CGGCTGGCAG TGCgagcg agaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCASCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4973893-4974013 2.8e-06 76_[+3]_36 chr2R:12454309-12454429 7.1e-06 91_[+3]_21 chr3L:11528607-11528727 7.1e-06 40_[+3]_72 chr2L:2165943-2166063 8.6e-06 82_[+3]_30 chr2L:1094803-1094923 8.6e-06 76_[+3]_36 chr2L:244032-244152 1.1e-05 18_[+3]_94 chrX:18004379-18004499 1.4e-05 50_[+3]_62 chr2L:5977467-5977587 1.8e-05 22_[+3]_90 chr2R:24657156-24657276 2.4e-05 95_[+3]_17 chr2R:7984212-7984332 2.4e-05 73_[+3]_39 chrX:16655890-16656010 2.7e-05 79_[+3]_33 chrX:7935997-7936117 3.3e-05 44_[+3]_68 chr3L:8509908-8510028 3.3e-05 67_[+3]_45 chr3L:19091919-19092039 4.3e-05 7_[+3]_105 chr2R:7879048-7879168 4.3e-05 36_[+3]_76 chr3L:4521966-4522086 4.3e-05 9_[+3]_103 chr2L:7628554-7628674 4.6e-05 81_[+3]_31 chr3R:9784472-9784592 5.3e-05 33_[+3]_79 chr2L:1142817-1142937 6.4e-05 50_[+3]_62 chr2R:17272596-17272716 6.4e-05 24_[+3]_88 chr3L:17113361-17113481 6.4e-05 79_[+3]_33 chr2L:20911531-20911651 7.5e-05 103_[+3]_9 chr2R:13429999-13430119 7.5e-05 35_[+3]_77 chr3R:11590116-11590236 7.5e-05 62_[+3]_50 chr2L:21037863-21037983 8.9e-05 [+3]_112 chr3L:16052564-16052684 8.9e-05 70_[+3]_42 chr2L:4829173-4829293 8.9e-05 111_[+3]_1 chr3L:21412295-21412415 0.0001 24_[+3]_88 chr3L:13044449-13044569 0.0001 87_[+3]_25 chr2L:1837828-1837948 0.00012 82_[+3]_30 chr3L:3932857-3932977 0.00014 85_[+3]_27 chr3R:14709044-14709164 0.00014 70_[+3]_42 chr2R:18356384-18356504 0.00015 107_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCASCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCCASCC width=8 seqs=33 chr2L:4973893-4974013 ( 77) TGCCAGCC 1 chr2R:12454309-12454429 ( 92) TGCCACCC 1 chr3L:11528607-11528727 ( 41) TGCCACCC 1 chr2L:2165943-2166063 ( 83) TGCCCCCC 1 chr2L:1094803-1094923 ( 77) TGCCCCCC 1 chr2L:244032-244152 ( 19) TGCCAGGC 1 chrX:18004379-18004499 ( 51) TGCCTGCC 1 chr2L:5977467-5977587 ( 23) TGCCCGGC 1 chr2R:24657156-24657276 ( 96) TGCCTCCC 1 chr2R:7984212-7984332 ( 74) TGCCTCCC 1 chrX:16655890-16656010 ( 80) TGCCCCGC 1 chrX:7935997-7936117 ( 45) GGCCACCC 1 chr3L:8509908-8510028 ( 68) GGCCACCC 1 chr3L:19091919-19092039 ( 8) TGCCAGCG 1 chr2R:7879048-7879168 ( 37) TGCCATCC 1 chr3L:4521966-4522086 ( 10) TGCCATCC 1 chr2L:7628554-7628674 ( 82) TGCCTGGC 1 chr3R:9784472-9784592 ( 34) TGCCCGCG 1 chr2L:1142817-1142937 ( 51) TGCGAGGC 1 chr2R:17272596-17272716 ( 25) TGCCAGCA 1 chr3L:17113361-17113481 ( 80) TGCCAGCA 1 chr2L:20911531-20911651 ( 104) TGCGTGCC 1 chr2R:13429999-13430119 ( 36) TGCCAGAC 1 chr3R:11590116-11590236 ( 63) TGCCAGAC 1 chr2L:21037863-21037983 ( 1) TGCCACCA 1 chr3L:16052564-16052684 ( 71) TGCCCGCA 1 chr2L:4829173-4829293 ( 112) TGCGCGGC 1 chr3L:21412295-21412415 ( 25) TGCCACAC 1 chr3L:13044449-13044569 ( 88) TGCGTCCC 1 chr2L:1837828-1837948 ( 83) TGCCATGC 1 chr3L:3932857-3932977 ( 86) GGCGACCC 1 chr3R:14709044-14709164 ( 71) TGCCCTGC 1 chr2R:18356384-18356504 ( 108) TGCGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCASCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 6.2e+002 -1169 -1169 -90 148 -1169 -1169 256 -1169 -1169 253 -1169 -1169 -1169 224 10 -1169 80 49 -1169 -85 -1169 119 152 -143 -186 194 52 -1169 -145 219 -90 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCASCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 6.2e+002 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.575758 0.242424 0.000000 0.181818 0.000000 0.393939 0.484848 0.121212 0.090909 0.666667 0.242424 0.000000 0.121212 0.787879 0.090909 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCASCC MEME-3 regular expression -------------------------------------------------------------------------------- TGCC[AC][GC][CG]C -------------------------------------------------------------------------------- Time 20.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GYAAACAW MEME-4 width = 8 sites = 36 llr = 308 E-value = 4.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYAAACAW MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a9a:a5 pos.-specific C :6:1:a:2 probability G a::::::1 matrix T :4:::::3 bits 2.6 * * 2.3 * * 2.0 * * 1.8 * * Relative 1.5 * * *** Entropy 1.3 *** *** (12.4 bits) 1.0 ******* 0.8 ******* 0.5 ******* 0.3 ******* 0.0 -------- Multilevel GCAAACAA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAACAW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16832859-16832979 87 1.99e-05 GTGCCACCTG GCAAACAA CCGACTTAAT chrX:6614425-6614545 92 1.99e-05 TAAACACACG GCAAACAA CTTCATTTGA chr3R:13644818-13644938 2 1.99e-05 A GCAAACAA GAGGACCATT chr3L:8689829-8689949 62 1.99e-05 aaacaaataa gcaaacaa acaaacaaGC chr3R:30198953-30199073 25 1.99e-05 TAATGCCAAA GCAAACAA CCAAAGGCTA chr3R:21176734-21176854 55 1.99e-05 CCTTGTCTTG GCAAACAA TGACGTCAGT chr2L:4829173-4829293 71 3.04e-05 ATTTACGTGT GCAAACAC AACAGCTCAC chrX:21322808-21322928 111 3.04e-05 AATTTCCGAG GCAAACAC AT chr2R:24746048-24746168 82 3.04e-05 AAacaaacaa gcaaacac acacacacac chr3R:23919513-23919633 16 5.01e-05 GCATATCTGA GCAAACAT TTTATTTGCG chr2L:5325073-5325193 9 5.01e-05 TACGACAC GCAAACAT AGAAACGCCT chr2L:13205391-13205511 87 5.01e-05 TCGTCCGTCC GCAAACAT CACGTGATTC chr2R:15480309-15480429 11 5.01e-05 AAACCAGTTT GCAAACAT GTACATGGCT chr2L:19930243-19930363 61 5.01e-05 AGCTAGAGCT GCAAACAT AGCTGCTTTT chr2R:15073112-15073232 94 5.01e-05 GCAAAGGTTT GCAAACAT TTAAAGATAA chr2R:13008208-13008328 53 8.77e-05 CGGCTGCACT GTAAACAA TTGGGGCTAA chr2L:21037863-21037983 44 8.77e-05 TGTTTGCCAT GTAAACAA ATAAACAAAT chr3L:21130954-21131074 31 8.77e-05 TTAATCAGAG GTAAACAA ACGAGGAAAA chr2L:20911531-20911651 58 8.77e-05 GTTTGCCTTT GTAAACAA TGGGAGGCTT chr2R:12140425-12140545 109 8.77e-05 AAATATTTTT GTAAACAA TTTT chr3L:2734468-2734588 84 8.77e-05 TATCAGCAGG GTAAACAA TAACAAAAGG chr2R:18605495-18605615 67 8.77e-05 TTGGCCAAAG GTAAACAA TTTGTTTTGG chr2R:23615238-23615358 37 8.77e-05 GCAGTCCCGA GTAAACAA TTAAAAACCC chrM:8660-8780 90 8.77e-05 TCAGTTTGAC GTAAACAA ACTAATCTAA chr3R:30802301-30802421 6 9.82e-05 GTTGA GCACACAA GCCATAGATG chr3L:8347500-8347620 63 9.82e-05 CGCCAGCTGT GCACACAA CGTCGCGGTC chr3L:9505614-9505734 7 1.18e-04 TTCTTA GTAAACAC AAAAAAATTA chr2L:16727670-16727790 25 1.34e-04 ACGACGCTCG GCACACAC AAATTCAAGC chr3L:11049547-11049667 39 1.34e-04 AAATCCGAAA GCAAACAG GGGAGCACCC chr3R:12401749-12401869 48 1.34e-04 ACAGAACAAT GCAAACAG ACTTTCGACT chr2R:7984212-7984332 86 1.34e-04 CCTCCCACTC GCACACAC GGTCGCGAGC chrX:7995278-7995398 92 1.34e-04 GCGTGCACAC GCACACAC GTGTGCCAGT chr3L:11291589-11291709 88 1.71e-04 AGTTAGTTTA GTAAACAT TATATTTAGG chrX:18094906-18095026 74 1.71e-04 aatatttCAA GTAAACAT AATTTGTAAT chr2L:18481240-18481360 35 1.71e-04 TTTTTACTTT GTAAACAT CAATAAATAT chr3R:17966143-17966263 45 1.71e-04 TGCCTCTCAT GTAAACAT TTGCATTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAACAW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16832859-16832979 2e-05 86_[+4]_26 chrX:6614425-6614545 2e-05 91_[+4]_21 chr3R:13644818-13644938 2e-05 1_[+4]_111 chr3L:8689829-8689949 2e-05 61_[+4]_51 chr3R:30198953-30199073 2e-05 24_[+4]_88 chr3R:21176734-21176854 2e-05 54_[+4]_58 chr2L:4829173-4829293 3e-05 70_[+4]_42 chrX:21322808-21322928 3e-05 110_[+4]_2 chr2R:24746048-24746168 3e-05 81_[+4]_31 chr3R:23919513-23919633 5e-05 15_[+4]_97 chr2L:5325073-5325193 5e-05 8_[+4]_104 chr2L:13205391-13205511 5e-05 86_[+4]_26 chr2R:15480309-15480429 5e-05 10_[+4]_102 chr2L:19930243-19930363 5e-05 60_[+4]_52 chr2R:15073112-15073232 5e-05 93_[+4]_19 chr2R:13008208-13008328 8.8e-05 52_[+4]_60 chr2L:21037863-21037983 8.8e-05 43_[+4]_69 chr3L:21130954-21131074 8.8e-05 30_[+4]_82 chr2L:20911531-20911651 8.8e-05 57_[+4]_55 chr2R:12140425-12140545 8.8e-05 108_[+4]_4 chr3L:2734468-2734588 8.8e-05 83_[+4]_29 chr2R:18605495-18605615 8.8e-05 66_[+4]_46 chr2R:23615238-23615358 8.8e-05 36_[+4]_76 chrM:8660-8780 8.8e-05 89_[+4]_23 chr3R:30802301-30802421 9.8e-05 5_[+4]_107 chr3L:8347500-8347620 9.8e-05 62_[+4]_50 chr3L:9505614-9505734 0.00012 6_[+4]_106 chr2L:16727670-16727790 0.00013 24_[+4]_88 chr3L:11049547-11049667 0.00013 38_[+4]_74 chr3R:12401749-12401869 0.00013 47_[+4]_65 chr2R:7984212-7984332 0.00013 85_[+4]_27 chrX:7995278-7995398 0.00013 91_[+4]_21 chr3L:11291589-11291709 0.00017 87_[+4]_25 chrX:18094906-18095026 0.00017 73_[+4]_39 chr2L:18481240-18481360 0.00017 34_[+4]_78 chr3R:17966143-17966263 0.00017 44_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAACAW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYAAACAW width=8 seqs=36 chr2R:16832859-16832979 ( 87) GCAAACAA 1 chrX:6614425-6614545 ( 92) GCAAACAA 1 chr3R:13644818-13644938 ( 2) GCAAACAA 1 chr3L:8689829-8689949 ( 62) GCAAACAA 1 chr3R:30198953-30199073 ( 25) GCAAACAA 1 chr3R:21176734-21176854 ( 55) GCAAACAA 1 chr2L:4829173-4829293 ( 71) GCAAACAC 1 chrX:21322808-21322928 ( 111) GCAAACAC 1 chr2R:24746048-24746168 ( 82) GCAAACAC 1 chr3R:23919513-23919633 ( 16) GCAAACAT 1 chr2L:5325073-5325193 ( 9) GCAAACAT 1 chr2L:13205391-13205511 ( 87) GCAAACAT 1 chr2R:15480309-15480429 ( 11) GCAAACAT 1 chr2L:19930243-19930363 ( 61) GCAAACAT 1 chr2R:15073112-15073232 ( 94) GCAAACAT 1 chr2R:13008208-13008328 ( 53) GTAAACAA 1 chr2L:21037863-21037983 ( 44) GTAAACAA 1 chr3L:21130954-21131074 ( 31) GTAAACAA 1 chr2L:20911531-20911651 ( 58) GTAAACAA 1 chr2R:12140425-12140545 ( 109) GTAAACAA 1 chr3L:2734468-2734588 ( 84) GTAAACAA 1 chr2R:18605495-18605615 ( 67) GTAAACAA 1 chr2R:23615238-23615358 ( 37) GTAAACAA 1 chrM:8660-8780 ( 90) GTAAACAA 1 chr3R:30802301-30802421 ( 6) GCACACAA 1 chr3L:8347500-8347620 ( 63) GCACACAA 1 chr3L:9505614-9505734 ( 7) GTAAACAC 1 chr2L:16727670-16727790 ( 25) GCACACAC 1 chr3L:11049547-11049667 ( 39) GCAAACAG 1 chr3R:12401749-12401869 ( 48) GCAAACAG 1 chr2R:7984212-7984332 ( 86) GCACACAC 1 chrX:7995278-7995398 ( 92) GCACACAC 1 chr3L:11291589-11291709 ( 88) GTAAACAT 1 chrX:18094906-18095026 ( 74) GTAAACAT 1 chr2L:18481240-18481360 ( 35) GTAAACAT 1 chr3R:17966143-17966263 ( 45) GTAAACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAACAW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.463 E= 4.1e+000 -1181 -1181 256 -1181 -1181 182 -1181 25 160 -1181 -1181 -1181 138 -32 -1181 -1181 160 -1181 -1181 -1181 -1181 253 -1181 -1181 160 -1181 -1181 -1181 52 17 -161 -23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAACAW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 4.1e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.611111 0.000000 0.388889 1.000000 0.000000 0.000000 0.000000 0.861111 0.138889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.472222 0.194444 0.055556 0.277778 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAACAW MEME-4 regular expression -------------------------------------------------------------------------------- G[CT]AAACA[AT] -------------------------------------------------------------------------------- Time 27.04 secs. ******************************************************************************** ******************************************************************************** MOTIF SCMCTGKG MEME-5 width = 8 sites = 15 llr = 147 E-value = 6.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCMCTGKG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::5::::: pos.-specific C 7a59:1:3 probability G 3::1:967 matrix T ::::a:4: bits 2.6 * 2.3 * * * 2.0 * * * 1.8 * * * * Relative 1.5 ** *** * Entropy 1.3 ** ***** (14.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCACTGGG consensus G C TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCMCTGKG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10866771-10866891 110 1.44e-06 AAACATAAAC CCCCTGGG CAA chr2L:13206403-13206523 104 1.44e-06 GATTAAGCGG CCCCTGGG TCTGTTCTA chr3L:8347500-8347620 15 5.60e-06 GAATTGGGTT GCCCTGGG TAGCCTAAAG chr3R:18311115-18311235 18 1.25e-05 CCGTTTGACG GCACTGGG GAaaataatt chr2L:21096551-21096671 100 2.06e-05 AGTATCCGTC CCACTGTG CAGTGGTGGG chr3R:6760961-6761081 97 2.06e-05 CTGCTAGATA CCACTGTG CGGAACTGGG chr2R:15155195-15155315 66 2.06e-05 ATATTTTTGC CCACTGTG AGTCCTGCGA chr2L:12549099-12549219 113 2.06e-05 GGCTTTTGTC CCACTGTG chr3L:2734468-2734588 65 2.06e-05 AGTTTCCCGA CCACTGGC ATATCAGCAG chr3R:30802301-30802421 107 2.48e-05 ACAGAGATCG GCCCTGGC GGACTA chr3L:19845646-19845766 11 2.48e-05 TACATATGTG GCCCTGTG CCCAAAAAAG chr2L:4133128-4133248 51 2.76e-05 CAGTTTTCTG CCCCTGTC AGTGGTTCTA chr2L:9763409-9763529 101 3.55e-05 ACGTTTTACA GCACTGGC CTCTGACACC chr3L:16870850-16870970 81 3.84e-05 ACATGAACCA CCCGTGGG AAGTGCAGTA chr2R:11178516-11178636 23 5.20e-05 AGTCAACCAA CCACTCGG GAATTGGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCMCTGKG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10866771-10866891 1.4e-06 109_[+5]_3 chr2L:13206403-13206523 1.4e-06 103_[+5]_9 chr3L:8347500-8347620 5.6e-06 14_[+5]_98 chr3R:18311115-18311235 1.3e-05 17_[+5]_95 chr2L:21096551-21096671 2.1e-05 99_[+5]_13 chr3R:6760961-6761081 2.1e-05 96_[+5]_16 chr2R:15155195-15155315 2.1e-05 65_[+5]_47 chr2L:12549099-12549219 2.1e-05 112_[+5] chr3L:2734468-2734588 2.1e-05 64_[+5]_48 chr3R:30802301-30802421 2.5e-05 106_[+5]_6 chr3L:19845646-19845766 2.5e-05 10_[+5]_102 chr2L:4133128-4133248 2.8e-05 50_[+5]_62 chr2L:9763409-9763529 3.6e-05 100_[+5]_12 chr3L:16870850-16870970 3.8e-05 80_[+5]_32 chr2R:11178516-11178636 5.2e-05 22_[+5]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCMCTGKG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCMCTGKG width=8 seqs=15 chr3L:10866771-10866891 ( 110) CCCCTGGG 1 chr2L:13206403-13206523 ( 104) CCCCTGGG 1 chr3L:8347500-8347620 ( 15) GCCCTGGG 1 chr3R:18311115-18311235 ( 18) GCACTGGG 1 chr2L:21096551-21096671 ( 100) CCACTGTG 1 chr3R:6760961-6761081 ( 97) CCACTGTG 1 chr2R:15155195-15155315 ( 66) CCACTGTG 1 chr2L:12549099-12549219 ( 113) CCACTGTG 1 chr3L:2734468-2734588 ( 65) CCACTGGC 1 chr3R:30802301-30802421 ( 107) GCCCTGGC 1 chr3L:19845646-19845766 ( 11) GCCCTGTG 1 chr2L:4133128-4133248 ( 51) CCCCTGTC 1 chr2L:9763409-9763529 ( 101) GCACTGGC 1 chr3L:16870850-16870970 ( 81) CCCGTGGG 1 chr2R:11178516-11178636 ( 23) CCACTCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCMCTGKG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 6.4e+003 -1055 194 97 -1055 -1055 253 -1055 -1055 69 143 -1055 -1055 -1055 243 -135 -1055 -1055 -1055 -1055 161 -1055 -138 246 -1055 -1055 -1055 182 29 -1055 62 211 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCMCTGKG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 6.4e+003 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.533333 0.466667 0.000000 0.000000 0.000000 0.933333 0.066667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.066667 0.933333 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.266667 0.733333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCMCTGKG MEME-5 regular expression -------------------------------------------------------------------------------- [CG]C[AC]CTG[GT][GC] -------------------------------------------------------------------------------- Time 33.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:5670-5790 9.48e-01 120 chrM:12839-12959 4.72e-01 120 chrM:4699-4819 7.56e-01 120 chrM:5984-6104 9.46e-01 120 chrM:11264-11384 7.44e-01 120 chrM:12162-12282 5.99e-01 120 chrM:13106-13226 1.00e+00 120 chrM:2711-2831 6.89e-01 120 chrM:7445-7565 8.39e-02 120 chrM:10697-10817 9.74e-01 120 chrM:3519-3639 1.76e-01 28_[+2(9.51e-05)]_84 chrM:5343-5463 1.43e-01 103_[+2(2.51e-05)]_9 chr3L:17310644-17310764 6.12e-01 120 chrM:1757-1877 4.80e-01 120 chrM:8660-8780 3.62e-01 89_[+4(8.77e-05)]_23 chrM:1982-2102 7.13e-01 120 chr3R:24007992-24008112 5.97e-01 120 chrX:18004379-18004499 1.85e-01 50_[+3(1.41e-05)]_62 chrM:10900-11020 4.73e-01 120 chr3L:1868954-1869074 9.99e-01 120 chr3L:19087994-19088114 9.15e-01 120 chr3R:16214037-16214157 5.12e-01 120 chrX:4691338-4691458 8.01e-01 120 chr2R:23615238-23615358 2.05e-02 36_[+4(8.77e-05)]_76 chr2R:15515777-15515897 9.44e-01 120 chrX:6439638-6439758 5.51e-01 120 chr3L:17113361-17113481 7.10e-02 79_[+3(6.42e-05)]_33 chr3L:2913428-2913548 8.99e-01 120 chr3L:11107587-11107707 9.46e-01 120 chr3R:30235345-30235465 9.78e-01 120 chr2R:24746048-24746168 3.33e-02 81_[+4(3.04e-05)]_31 chr2L:244032-244152 8.92e-04 18_[+3(1.13e-05)]_94 chr2L:3938985-3939105 3.94e-01 120 chr3R:9083498-9083618 4.66e-01 120 chr3L:15923469-15923589 8.85e-01 120 chrX:7995278-7995398 1.27e-03 120 chr3R:17966143-17966263 3.29e-02 120 chrX:13208281-13208401 9.99e-01 120 chrX:11710408-11710528 9.77e-01 120 chrX:12073742-12073862 2.59e-01 120 chr3R:11243233-11243353 4.72e-01 120 chr2R:12679865-12679985 4.05e-01 120 chr3R:17049093-17049213 8.96e-01 120 chr3R:14709044-14709164 7.22e-02 120 chr2R:16770374-16770494 4.30e-01 120 chr3L:19845646-19845766 1.29e-03 10_[+5(2.48e-05)]_102 chr3L:17459005-17459125 9.79e-01 120 chr2L:1043715-1043835 1.44e-01 120 chr2L:18481240-18481360 5.46e-01 120 chr2L:4973893-4974013 2.47e-04 76_[+3(2.79e-06)]_36 chr2R:17272596-17272716 1.44e-02 24_[+3(6.42e-05)]_88 chr3R:15117833-15117953 8.25e-01 120 chr2L:13206403-13206523 9.88e-07 53_[+2(1.53e-05)]_42_[+5(1.44e-06)]_\ 9 chr3R:24474927-24475047 8.19e-01 120 chrX:14727635-14727755 2.52e-03 9_[+2(4.34e-05)]_103 chr3L:9424611-9424731 1.30e-01 120 chr3L:16870850-16870970 9.58e-03 80_[+5(3.84e-05)]_32 chr3L:4603625-4603745 9.97e-01 120 chr2R:22508165-22508285 8.41e-01 120 chr3R:28959273-28959393 6.51e-01 120 chr2R:12547696-12547816 7.09e-01 120 chr2R:17028053-17028173 6.71e-01 120 chr3R:21176734-21176854 4.63e-02 54_[+4(1.99e-05)]_58 chr2R:15073112-15073232 1.41e-01 93_[+4(5.01e-05)]_19 chr3L:11450654-11450774 7.89e-01 120 chrX:18125579-18125699 3.40e-01 120 chr3R:11590116-11590236 6.81e-04 62_[+3(7.51e-05)]_50 chr2R:13909038-13909158 4.77e-01 120 chr2L:1048519-1048639 2.99e-01 120 chr2L:14141364-14141484 9.79e-01 120 chr2L:19121056-19121176 6.25e-01 120 chrX:21045659-21045779 9.77e-01 120 chr3L:3078932-3079052 1.19e-02 103_[+2(3.44e-05)]_9 chr2L:18658244-18658364 8.91e-01 120 chr3L:12507790-12507910 3.94e-06 42_[+1(9.19e-06)]_47_[+2(7.74e-06)]_\ 15 chr2R:22387345-22387465 1.04e-03 5_[+1(8.22e-05)]_107 chr3R:17605131-17605251 1.89e-03 32_[+1(3.07e-05)]_80 chr3R:14014238-14014358 9.59e-01 120 chr2R:7984212-7984332 3.91e-05 73_[+3(2.39e-05)]_39 chr2L:19930243-19930363 8.50e-02 60_[+4(5.01e-05)]_52 chr2R:18605495-18605615 1.07e-01 66_[+4(8.77e-05)]_46 chrX:9202189-9202309 1.00e+00 120 chr2L:7628554-7628674 2.13e-02 81_[+3(4.64e-05)]_31 chr3L:5182374-5182494 9.88e-01 120 chr3L:2734468-2734588 8.31e-04 64_[+5(2.06e-05)]_11_[+4(8.77e-05)]_\ 29 chr2R:12951597-12951717 6.38e-01 120 chrX:16086249-16086369 1.77e-01 120 chrX:5664325-5664445 4.64e-06 13_[+2(7.74e-06)]_30_[+1(1.55e-05)]_\ 61 chr2L:12549099-12549219 8.22e-02 112_[+5(2.06e-05)] chr2L:5977467-5977587 3.36e-03 22_[+3(1.83e-05)]_90 chr3L:11528607-11528727 2.23e-04 40_[+3(7.10e-06)]_10_[+1(5.45e-05)]_\ [+3(8.90e-05)]_46 chr3L:15275586-15275706 9.99e-01 120 chrX:17694936-17695056 3.57e-01 120 chr2R:22312694-22312814 5.53e-03 47_[+2(4.90e-05)]_65 chr3R:7892811-7892931 9.99e-01 120 chr2L:18966977-18967097 1.00e+00 120 chrX:966930-967050 8.28e-01 120 chr3R:15367005-15367125 9.89e-01 120 chr3L:19263582-19263702 8.97e-01 120 chr3R:30325593-30325713 5.45e-01 120 chr3R:9784472-9784592 2.82e-03 33_[+3(5.34e-05)]_79 chr2R:14136871-14136991 9.00e-01 120 chr2L:117896-118016 1.05e-01 120 chr2R:21895087-21895207 1.67e-01 120 chr2L:20808390-20808510 8.10e-01 120 chr3R:14875775-14875895 7.41e-01 120 chr2R:19414722-19414842 2.23e-01 120 chr2L:18548845-18548965 1.00e+00 120 chr2L:9509781-9509901 1.76e-02 120 chr3R:18296268-18296388 1.21e-02 105_[+2(5.67e-05)]_7 chr2R:19449817-19449937 8.66e-02 120 chr3L:19073313-19073433 3.87e-04 28_[+1(8.22e-05)]_84 chr2R:14275550-14275670 5.21e-01 120 chr2R:6153305-6153425 3.79e-01 120 chr3R:30198953-30199073 2.60e-02 24_[+4(1.99e-05)]_88 chr3L:4521966-4522086 2.05e-02 9_[+3(4.29e-05)]_103 chr3L:2845294-2845414 6.45e-01 120 chrX:10573663-10573783 8.58e-01 120 chr2L:4133128-4133248 7.29e-03 50_[+5(2.76e-05)]_62 chr2L:2872662-2872782 9.93e-01 120 chr2R:15480309-15480429 4.79e-04 10_[+4(5.01e-05)]_52_[+1(9.75e-05)]_\ 42 chr2R:18435201-18435321 5.19e-02 120 chr2L:1094803-1094923 1.36e-03 76_[+3(8.59e-06)]_36 chr3L:1151825-1151945 4.22e-01 120 chrX:17294293-17294413 2.88e-02 32_[+1(3.07e-05)]_80 chr2R:23740428-23740548 8.36e-04 101_[+1(3.56e-05)]_11 chrX:18094906-18095026 3.68e-02 120 chr2R:11178516-11178636 1.87e-03 22_[+5(5.20e-05)]_17_[+1(3.56e-05)]_\ 65 chr3R:25168328-25168448 8.24e-01 120 chr2R:15154965-15155085 9.86e-01 120 chr2R:18356384-18356504 3.41e-04 96_[+1(5.45e-05)]_16 chr2R:7879048-7879168 5.75e-03 36_[+3(4.29e-05)]_76 chrX:21322808-21322928 1.26e-01 110_[+4(3.04e-05)]_2 chr3R:12401749-12401869 6.95e-03 102_[+2(3.44e-05)]_10 chr3L:8509908-8510028 5.58e-03 67_[+3(3.33e-05)]_45 chr2L:1619304-1619424 6.90e-01 120 chrX:17293516-17293636 9.80e-01 120 chr2L:16647861-16647981 9.84e-01 120 chr3L:10893417-10893537 3.32e-01 120 chr2L:11203746-11203866 1.99e-02 120 chr3L:8347500-8347620 9.19e-08 14_[+5(5.60e-06)]_31_[+1(2.38e-05)]_\ 1_[+4(9.82e-05)]_4_[+2(3.58e-05)]_38 chr3R:16476594-16476714 9.98e-01 120 chrX:13570405-13570525 8.42e-02 120 chr3R:9550601-9550721 9.47e-02 120 chr3L:797076-797196 7.36e-01 120 chr3L:8689829-8689949 7.04e-06 [+1(3.07e-05)]_53_[+4(1.99e-05)]_8_\ [+2(7.74e-06)]_35 chr2R:16848469-16848589 1.90e-01 120 chr3L:11291589-11291709 1.49e-01 120 chr2R:15155195-15155315 1.00e-03 65_[+5(2.06e-05)]_47 chr3L:17003649-17003769 7.30e-05 22_[+1(4.60e-05)]_90 chr3L:19091919-19092039 4.51e-06 7_[+3(4.29e-05)]_5_[+2(4.34e-05)]_\ 63_[+1(4.26e-06)]_21 chr2L:2165943-2166063 1.01e-03 82_[+3(8.59e-06)]_20_[+2(9.51e-05)]_\ 2 chr3L:13903371-13903491 1.23e-01 23_[+2(7.67e-05)]_89 chr2L:9493423-9493543 9.81e-01 120 chr2R:12454309-12454429 3.98e-04 91_[+3(7.10e-06)]_21 chr3L:11070519-11070639 7.88e-05 62_[+1(2.87e-06)]_50 chr2R:12140425-12140545 5.68e-03 108_[+4(8.77e-05)]_4 chr3L:13044449-13044569 4.30e-05 18_[+2(7.74e-06)]_94 chr3L:21412295-21412415 1.74e-01 120 chr2L:1837828-1837948 1.01e-01 120 chr3R:5300776-5300896 2.92e-04 40_[+1(2.52e-05)]_1_[+2(4.90e-05)]_\ 44_[+5(9.01e-05)]_11 chrX:13789027-13789147 5.47e-01 120 chr3R:21629809-21629929 8.00e-02 120 chr2L:5196833-5196953 5.66e-02 8_[+1(4.39e-05)]_104 chr3R:4821218-4821338 2.15e-03 18_[+1(4.26e-06)]_94 chr3R:14479719-14479839 5.75e-01 120 chr3R:5746806-5746926 3.41e-01 120 chr2L:4829173-4829293 1.41e-05 70_[+4(3.04e-05)]_33_[+3(8.90e-05)]_\ 1 chr3R:7821655-7821775 2.25e-01 120 chr3L:16045496-16045616 7.10e-01 120 chr2R:14109827-14109947 9.74e-02 120 chr2L:9564637-9564757 9.87e-01 120 chr3R:30802301-30802421 1.19e-05 5_[+4(9.82e-05)]_37_[+1(4.82e-05)]_\ 48_[+5(2.48e-05)]_6 chr2R:13429999-13430119 1.60e-05 19_[+1(1.46e-06)]_8_[+3(7.51e-05)]_\ 77 chr3R:26105962-26106082 5.60e-01 120 chr3L:708079-708199 4.11e-03 74_[+2(3.58e-05)]_38 chr2L:20715186-20715306 8.98e-01 120 chrX:2274950-2275070 5.28e-03 86_[+2(7.74e-06)]_26 chr2L:13205391-13205511 2.12e-06 66_[+3(7.10e-06)]_12_[+4(5.01e-05)]_\ 26 chr3R:28556520-28556640 1.30e-01 120 chr2R:19127963-19128083 9.64e-01 120 chr2L:5325073-5325193 6.65e-02 8_[+4(5.01e-05)]_104 chrX:6800974-6801094 5.50e-02 120 chrX:11885542-11885662 9.89e-01 120 chr2R:22657335-22657455 9.89e-01 120 chr3L:16052564-16052684 2.04e-03 57_[+2(2.09e-05)]_5_[+3(8.90e-05)]_\ 42 chr3L:10362880-10363000 9.86e-02 16_[+1(7.16e-05)]_96 chr2L:10760728-10760848 1.00e+00 120 chr2R:8002331-8002451 3.07e-01 120 chr3R:18311115-18311235 1.88e-03 17_[+5(1.25e-05)]_95 chr2L:20911531-20911651 2.85e-04 57_[+4(8.77e-05)]_38_[+3(7.51e-05)]_\ 9 chr3R:6760961-6761081 2.53e-02 96_[+5(2.06e-05)]_16 chr2L:21096551-21096671 4.58e-03 99_[+5(2.06e-05)]_13 chr3R:13644818-13644938 3.51e-03 1_[+4(1.99e-05)]_111 chrX:18524886-18525006 5.82e-01 120 chrX:8542118-8542238 1.34e-01 120 chr3L:11049547-11049667 1.20e-04 70_[+2(2.51e-05)]_42 chrX:7935997-7936117 8.70e-05 31_[+2(5.67e-05)]_5_[+3(3.33e-05)]_\ 26_[+1(5.45e-05)]_34 chr3L:9505614-9505734 2.22e-01 120 chr2R:23578564-23578684 8.86e-01 120 chr3L:3932857-3932977 4.83e-02 120 chrX:13764560-13764680 4.27e-01 120 chrX:12937932-12938052 1.00e+00 120 chr3L:629498-629618 2.97e-03 120 chr3L:8604429-8604549 4.16e-02 120 chrX:2591744-2591864 2.54e-02 120 chr3L:9505410-9505530 9.44e-01 120 chr2L:5096892-5097012 5.38e-03 21_[+1(2.10e-05)]_91 chr2R:6133384-6133504 3.27e-02 120 chr2R:23964849-23964969 6.44e-03 94_[+2(6.09e-05)]_18 chr2R:10196349-10196469 7.50e-01 120 chr2R:24028443-24028563 5.94e-01 120 chr2L:10250003-10250123 8.64e-03 120 chr3R:12720076-12720196 4.04e-01 120 chr2L:19141031-19141151 4.95e-01 120 chr3R:5636880-5637000 9.98e-01 120 chr2R:7735159-7735279 9.17e-04 10_[+1(8.22e-05)]_102 chrX:6614425-6614545 1.69e-03 91_[+4(1.99e-05)]_21 chr3L:12269989-12270109 3.95e-01 120 chr3R:20833134-20833254 2.60e-02 48_[+2(4.90e-05)]_64 chr2R:10854239-10854359 8.32e-03 65_[+1(3.56e-05)]_47 chr3L:11540380-11540500 8.75e-03 120 chr2R:24657156-24657276 9.63e-03 95_[+3(2.39e-05)]_17 chr2L:2374168-2374288 1.00e+00 120 chrX:16655890-16656010 2.13e-03 79_[+3(2.68e-05)]_9_[+3(7.51e-05)]_\ 16 chr3L:21130954-21131074 2.00e-02 30_[+4(8.77e-05)]_82 chr3R:23919513-23919633 1.68e-02 15_[+4(5.01e-05)]_97 chr3R:15250607-15250727 9.65e-01 120 chr3L:17655984-17656104 2.66e-03 65_[+1(3.07e-05)]_47 chr3R:22494642-22494762 7.46e-01 120 chr2L:12372551-12372671 1.29e-01 120 chrX:3811368-3811488 2.42e-01 120 chr2L:12721116-12721236 2.17e-01 120 chr3L:15814158-15814278 1.89e-01 120 chr2R:7748207-7748327 6.30e-01 120 chr2L:21037863-21037983 1.93e-06 [+3(8.90e-05)]_[+2(3.44e-05)]_27_\ [+4(8.77e-05)]_69 chrX:21375704-21375824 3.01e-02 120 chr2L:6357068-6357188 4.04e-02 78_[+2(5.67e-05)]_34 chr2L:12463147-12463267 4.05e-01 120 chr3L:10866771-10866891 1.42e-04 109_[+5(1.44e-06)]_3 chr2R:13008208-13008328 3.79e-04 52_[+4(8.77e-05)]_60 chr3L:13905626-13905746 9.76e-01 120 chr3R:16213107-16213227 8.07e-01 120 chr2L:9763409-9763529 2.97e-02 100_[+5(3.55e-05)]_12 chr2L:16727670-16727790 1.85e-02 120 chr2L:1142817-1142937 2.58e-02 50_[+3(6.42e-05)]_62 chr3L:554785-554905 2.79e-01 120 chr2R:16832859-16832979 4.11e-04 86_[+4(1.99e-05)]_26 chr2L:22144319-22144439 5.95e-01 120 chr3R:4714113-4714233 6.97e-04 79_[+1(7.76e-06)]_33 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************