******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6276.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:5579929-5580049 1.0000 120 chrX:15313544-15313664 1.0000 120 chr3R:19833689-19833809 1.0000 120 chr2L:11032773-11032893 1.0000 120 chr2R:15245599-15245719 1.0000 120 chrX:351134-351254 1.0000 120 chr2L:20840180-20840300 1.0000 120 chrX:5977879-5977999 1.0000 120 chr2R:12733778-12733898 1.0000 120 chr3L:11052874-11052994 1.0000 120 chr2L:487870-487990 1.0000 120 chrX:18057365-18057485 1.0000 120 chr2L:6503573-6503693 1.0000 120 chr3L:10946253-10946373 1.0000 120 chr2R:18346821-18346941 1.0000 120 chr3R:14758501-14758621 1.0000 120 chr3R:26442905-26443025 1.0000 120 chr3L:14554918-14555038 1.0000 120 chr2L:6271550-6271670 1.0000 120 chr2L:13246411-13246531 1.0000 120 chrX:1966116-1966236 1.0000 120 chr2L:13925874-13925994 1.0000 120 chr3L:21237119-21237239 1.0000 120 chr2R:15808714-15808834 1.0000 120 chr3L:11701821-11701941 1.0000 120 chr3L:15708646-15708766 1.0000 120 chrX:14812393-14812513 1.0000 120 chrX:1979811-1979931 1.0000 120 chrX:20129656-20129776 1.0000 120 chr2R:20547707-20547827 1.0000 120 chr2L:9669510-9669630 1.0000 120 chr2L:18744004-18744124 1.0000 120 chr3L:4392967-4393087 1.0000 120 chr3R:13393843-13393963 1.0000 120 chr2R:24590918-24591038 1.0000 120 chr3L:10787790-10787910 1.0000 120 chrX:9586138-9586258 1.0000 120 chr3R:30343202-30343322 1.0000 120 chr3L:1900809-1900929 1.0000 120 chr3R:19264908-19265028 1.0000 120 chr2R:22727165-22727285 1.0000 120 chr2R:23972379-23972499 1.0000 120 chrX:11531386-11531506 1.0000 120 chr2L:11427766-11427886 1.0000 120 chr3L:8319220-8319340 1.0000 120 chrX:20244413-20244533 1.0000 120 chrX:7699698-7699818 1.0000 120 chr2L:3482171-3482291 1.0000 120 chrX:3189923-3190043 1.0000 120 chr2R:17396024-17396144 1.0000 120 chr3R:18624639-18624759 1.0000 120 chr3L:5385890-5386010 1.0000 120 chr3L:8693726-8693846 1.0000 120 chrX:20491002-20491122 1.0000 120 chrX:10106885-10107005 1.0000 120 chrX:10558225-10558345 1.0000 120 chr3L:7617711-7617831 1.0000 120 chr3L:14219573-14219693 1.0000 120 chr3R:31251473-31251593 1.0000 120 chr3R:14424950-14425070 1.0000 120 chrX:8714192-8714312 1.0000 120 chr2R:17845712-17845832 1.0000 120 chrX:1969906-1970026 1.0000 120 chr3L:20570258-20570378 1.0000 120 chr3L:10792757-10792877 1.0000 120 chr3L:21224400-21224520 1.0000 120 chr2L:664449-664569 1.0000 120 chrX:10577919-10578039 1.0000 120 chr3L:4336694-4336814 1.0000 120 chr3L:2582462-2582582 1.0000 120 chr2R:22558042-22558162 1.0000 120 chr3R:7522420-7522540 1.0000 120 chr3L:9872163-9872283 1.0000 120 chr2L:6193164-6193284 1.0000 120 chr3R:20765456-20765576 1.0000 120 chr2R:9032808-9032928 1.0000 120 chr3R:6429840-6429960 1.0000 120 chrX:3454854-3454974 1.0000 120 chr2R:18432748-18432868 1.0000 120 chr2R:16197424-16197544 1.0000 120 chr2L:15422643-15422763 1.0000 120 chrX:17524517-17524637 1.0000 120 chrX:17686209-17686329 1.0000 120 chr2L:604253-604373 1.0000 120 chr2R:8588578-8588698 1.0000 120 chr2L:7513827-7513947 1.0000 120 chr3L:10376784-10376904 1.0000 120 chr3R:10282203-10282323 1.0000 120 chr3L:13949832-13949952 1.0000 120 chr2L:1535333-1535453 1.0000 120 chr2R:18331272-18331392 1.0000 120 chr3L:7013756-7013876 1.0000 120 chr2L:16488003-16488123 1.0000 120 chrX:1979150-1979270 1.0000 120 chr2L:2478515-2478635 1.0000 120 chr3R:7992199-7992319 1.0000 120 chr3R:16041738-16041858 1.0000 120 chr3R:9222538-9222658 1.0000 120 chr2R:15247393-15247513 1.0000 120 chrX:4944342-4944462 1.0000 120 chr2R:8145523-8145643 1.0000 120 chr3R:23416700-23416820 1.0000 120 chr2R:17843485-17843605 1.0000 120 chr3L:6331846-6331966 1.0000 120 chr3L:8333717-8333837 1.0000 120 chrX:6052980-6053100 1.0000 120 chr2L:13928600-13928720 1.0000 120 chr3R:21954201-21954321 1.0000 120 chr3L:18626525-18626645 1.0000 120 chr2L:9949244-9949364 1.0000 120 chrX:5986951-5987071 1.0000 120 chrX:15620602-15620722 1.0000 120 chr2R:14326138-14326258 1.0000 120 chr3R:23527562-23527682 1.0000 120 chrX:15651686-15651806 1.0000 120 chr2L:9707218-9707338 1.0000 120 chr3L:7147928-7148048 1.0000 120 chr2L:18746836-18746956 1.0000 120 chr2R:13769533-13769653 1.0000 120 chr2L:19441977-19442097 1.0000 120 chrX:6354146-6354266 1.0000 120 chr3R:18796410-18796530 1.0000 120 chr3L:20445950-20446070 1.0000 120 chr3R:15923046-15923166 1.0000 120 chr3L:18628204-18628324 1.0000 120 chr3R:14280439-14280559 1.0000 120 chr3R:23504877-23504997 1.0000 120 chr3L:12496535-12496655 1.0000 120 chr2L:14259938-14260058 1.0000 120 chr2R:18243966-18244086 1.0000 120 chr3L:21229910-21230030 1.0000 120 chr3R:5019029-5019149 1.0000 120 chr3R:20318038-20318158 1.0000 120 chr2L:15321569-15321689 1.0000 120 chr3L:17905830-17905950 1.0000 120 chrX:8521661-8521781 1.0000 120 chr2L:18753011-18753131 1.0000 120 chr2R:18893760-18893880 1.0000 120 chr2R:13023084-13023204 1.0000 120 chrX:3453577-3453697 1.0000 120 chr3R:18633282-18633402 1.0000 120 chr3R:28913171-28913291 1.0000 120 chr3L:1844700-1844820 1.0000 120 chr3R:18493903-18494023 1.0000 120 chr3R:22594378-22594498 1.0000 120 chr3R:6270110-6270230 1.0000 120 chr3L:756533-756653 1.0000 120 chr3R:14455608-14455728 1.0000 120 chr2R:8646570-8646690 1.0000 120 chr3L:8673741-8673861 1.0000 120 chr3L:3657005-3657125 1.0000 120 chr2L:14318763-14318883 1.0000 120 chrX:1988803-1988923 1.0000 120 chr3L:8045005-8045125 1.0000 120 chr3L:8422280-8422400 1.0000 120 chr3L:16972286-16972406 1.0000 120 chr2R:10216549-10216669 1.0000 120 chr3R:24908143-24908263 1.0000 120 chr2L:131469-131589 1.0000 120 chr3L:19329668-19329788 1.0000 120 chr2R:13025462-13025582 1.0000 120 chr2R:17635138-17635258 1.0000 120 chr2L:3002095-3002215 1.0000 120 chr3R:15567084-15567204 1.0000 120 chr3R:25753922-25754042 1.0000 120 chr2R:13234980-13235100 1.0000 120 chr3R:10028466-10028586 1.0000 120 chr2R:11952291-11952411 1.0000 120 chr2R:7173192-7173312 1.0000 120 chr3L:11155497-11155617 1.0000 120 chrX:17914613-17914733 1.0000 120 chr2R:18899142-18899262 1.0000 120 chr2L:9945219-9945339 1.0000 120 chr3R:12297375-12297495 1.0000 120 chr2R:14111932-14112052 1.0000 120 chr2R:22571968-22572088 1.0000 120 chr2R:17243685-17243805 1.0000 120 chr2R:21206127-21206247 1.0000 120 chr2L:3731181-3731301 1.0000 120 chr3R:30344667-30344787 1.0000 120 chr3L:21896421-21896541 1.0000 120 chr3L:5802116-5802236 1.0000 120 chr3R:11969335-11969455 1.0000 120 chr3R:29211859-29211979 1.0000 120 chr3R:21703494-21703614 1.0000 120 chr3R:13857461-13857581 1.0000 120 chrX:10960009-10960129 1.0000 120 chr2R:8596676-8596796 1.0000 120 chr2R:23020490-23020610 1.0000 120 chr3R:25459339-25459459 1.0000 120 chr3L:11444263-11444383 1.0000 120 chr2R:13933422-13933542 1.0000 120 chr3L:41830-41950 1.0000 120 chr3L:9745525-9745645 1.0000 120 chr2R:19445705-19445825 1.0000 120 chr2L:2185516-2185636 1.0000 120 chr2R:7905124-7905244 1.0000 120 chr2R:10847430-10847550 1.0000 120 chr2R:14083102-14083222 1.0000 120 chr3R:8971954-8972074 1.0000 120 chrX:8163608-8163728 1.0000 120 chr3R:27706170-27706290 1.0000 120 chr3L:13487158-13487278 1.0000 120 chr2L:7938589-7938709 1.0000 120 chr3L:19234491-19234611 1.0000 120 chr3L:21223375-21223495 1.0000 120 chr2R:22596919-22597039 1.0000 120 chr2L:20328088-20328208 1.0000 120 chrX:17692880-17693000 1.0000 120 chr3L:18248634-18248754 1.0000 120 chr2R:11100872-11100992 1.0000 120 chr2L:21683752-21683872 1.0000 120 chr3R:13992285-13992405 1.0000 120 chr2L:15466090-15466210 1.0000 120 chr3R:26332369-26332489 1.0000 120 chr2L:17130854-17130974 1.0000 120 chr3R:11616456-11616576 1.0000 120 chr2L:4886091-4886211 1.0000 120 chr2R:11315606-11315726 1.0000 120 chr3R:8948152-8948272 1.0000 120 chrX:10953448-10953568 1.0000 120 chr2L:6276942-6277062 1.0000 120 chr3R:24910225-24910345 1.0000 120 chr2R:18355918-18356038 1.0000 120 chr2R:21000532-21000652 1.0000 120 chr3L:6308754-6308874 1.0000 120 chr3R:14486593-14486713 1.0000 120 chr3R:26019347-26019467 1.0000 120 chr2R:15233527-15233647 1.0000 120 chr3R:21704552-21704672 1.0000 120 chr3L:5626616-5626736 1.0000 120 chr2L:20340785-20340905 1.0000 120 chrX:18542100-18542220 1.0000 120 chrX:16873339-16873459 1.0000 120 chr2L:4347163-4347283 1.0000 120 chr3R:28850816-28850936 1.0000 120 chrX:9344293-9344413 1.0000 120 chr3L:14422282-14422402 1.0000 120 chr2R:12413266-12413386 1.0000 120 chr3R:27181247-27181367 1.0000 120 chr3R:6214347-6214467 1.0000 120 chr2L:21246806-21246926 1.0000 120 chrX:14922520-14922640 1.0000 120 chr2L:243904-244024 1.0000 120 chr3R:13524772-13524892 1.0000 120 chr2L:7949127-7949247 1.0000 120 chrX:15123595-15123715 1.0000 120 chrX:17679814-17679934 1.0000 120 chr3L:16002530-16002650 1.0000 120 chrX:20130621-20130741 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG6276/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6276.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.332 C 0.169 G 0.164 T 0.335 Background letter frequencies (from file dataset with add-one prior applied): A 0.332 C 0.169 G 0.164 T 0.335 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SBCGSCGC MEME-1 width = 8 sites = 22 llr = 209 E-value = 5.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SBCGSCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:::1 pos.-specific C 649169:9 probability G 431741a: matrix T :3:::::: bits 2.6 2.3 * 2.1 * *** 1.8 * *** Relative 1.6 * * **** Entropy 1.3 * ****** (13.7 bits) 1.0 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCGCCGC consensus GG G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCGSCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9344293-9344413 74 2.45e-06 TCGACCATGG GCCGCCGC CGTCGCCTCG chr3R:27706170-27706290 45 2.45e-06 TATTTATACT CCCGGCGC ACTGGTGAAA chr3R:6429840-6429960 76 3.63e-06 TTTTTGTTGA GGCGCCGC CTGGCGGTCT chr2R:15808714-15808834 78 3.63e-06 tatattttCT CGCGGCGC TTATCAAGCG chrX:15620602-15620722 74 5.46e-06 atACAAACCC CTCGCCGC ACCCCTCCTC chr3R:13393843-13393963 100 5.46e-06 TCAGATTGTT CTCGCCGC GATAAAGAGA chr3R:26332369-26332489 50 8.45e-06 TCAATGTCAG CTCGGCGC TTGAAAAACT chr2R:17843485-17843605 2 8.45e-06 C GTCGCCGC CGTGTTTTTC chr3R:5019029-5019149 6 1.15e-05 TTATA CGCGCGGC TGGCGCAGCA chr3L:13487158-13487278 71 1.51e-05 GGCCCCTCAC CGCCCCGC CACCGTGCAT chr2L:6193164-6193284 106 1.51e-05 GAAAACTTTG CCCACCGC TCAAGCG chr3L:11052874-11052994 78 1.70e-05 GATTCGTATC CCCCGCGC TTGCaacaaa chr2R:15245599-15245719 111 2.05e-05 CGACAACGTG CCGGGCGC AG chrX:5986951-5987071 61 2.60e-05 GCTATAGTCC CCCGCCGA TCTGGCACTG chr2R:21000532-21000652 17 3.26e-05 TACTTCACTT CCCGCCCC TTCTCTATCT chr3L:21896421-21896541 72 3.26e-05 CCAAGAGGAG GGCGGGGC CCTGCCGTTT chrX:1988803-1988923 68 3.26e-05 CAATGAATCC GGCACCGC AGGATCGAAT chr3L:10946253-10946373 85 3.74e-05 TTTATGACAC GCCAGCGC CAGACGCGCG chr2R:24590918-24591038 68 4.16e-05 TGCTCGCCAA GCCGCCGA GTGGATTCCA chr3L:14219573-14219693 87 4.83e-05 CCCAAAACAA GTCGCGGC TTCTGCCGAC chr2R:13025462-13025582 60 5.68e-05 GCATTCGGAA CGCTCCGC TCCACAAATG chr2R:15247393-15247513 104 6.15e-05 AAATCAATTA CTGGGCGC ACAAACAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCGSCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9344293-9344413 2.5e-06 73_[+1]_39 chr3R:27706170-27706290 2.5e-06 44_[+1]_68 chr3R:6429840-6429960 3.6e-06 75_[+1]_37 chr2R:15808714-15808834 3.6e-06 77_[+1]_35 chrX:15620602-15620722 5.5e-06 73_[+1]_39 chr3R:13393843-13393963 5.5e-06 99_[+1]_13 chr3R:26332369-26332489 8.4e-06 49_[+1]_63 chr2R:17843485-17843605 8.4e-06 1_[+1]_111 chr3R:5019029-5019149 1.1e-05 5_[+1]_107 chr3L:13487158-13487278 1.5e-05 70_[+1]_42 chr2L:6193164-6193284 1.5e-05 105_[+1]_7 chr3L:11052874-11052994 1.7e-05 77_[+1]_35 chr2R:15245599-15245719 2.1e-05 110_[+1]_2 chrX:5986951-5987071 2.6e-05 60_[+1]_52 chr2R:21000532-21000652 3.3e-05 16_[+1]_96 chr3L:21896421-21896541 3.3e-05 71_[+1]_41 chrX:1988803-1988923 3.3e-05 67_[+1]_45 chr3L:10946253-10946373 3.7e-05 84_[+1]_28 chr2R:24590918-24591038 4.2e-05 67_[+1]_45 chr3L:14219573-14219693 4.8e-05 86_[+1]_26 chr2R:13025462-13025582 5.7e-05 59_[+1]_53 chr2R:15247393-15247513 6.1e-05 103_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCGSCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SBCGSCGC width=8 seqs=22 chrX:9344293-9344413 ( 74) GCCGCCGC 1 chr3R:27706170-27706290 ( 45) CCCGGCGC 1 chr3R:6429840-6429960 ( 76) GGCGCCGC 1 chr2R:15808714-15808834 ( 78) CGCGGCGC 1 chrX:15620602-15620722 ( 74) CTCGCCGC 1 chr3R:13393843-13393963 ( 100) CTCGCCGC 1 chr3R:26332369-26332489 ( 50) CTCGGCGC 1 chr2R:17843485-17843605 ( 2) GTCGCCGC 1 chr3R:5019029-5019149 ( 6) CGCGCGGC 1 chr3L:13487158-13487278 ( 71) CGCCCCGC 1 chr2L:6193164-6193284 ( 106) CCCACCGC 1 chr3L:11052874-11052994 ( 78) CCCCGCGC 1 chr2R:15245599-15245719 ( 111) CCGGGCGC 1 chrX:5986951-5987071 ( 61) CCCGCCGA 1 chr2R:21000532-21000652 ( 17) CCCGCCCC 1 chr3L:21896421-21896541 ( 72) GGCGGGGC 1 chrX:1988803-1988923 ( 68) GGCACCGC 1 chr3L:10946253-10946373 ( 85) GCCAGCGC 1 chr2R:24590918-24591038 ( 68) GCCGCCGA 1 chr3L:14219573-14219693 ( 87) GTCGCGGC 1 chr2R:13025462-13025582 ( 60) CGCTCCGC 1 chr2R:15247393-15247513 ( 104) CTGGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCGSCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 5.0e-001 -1110 191 115 -1110 -1110 127 96 -30 -1110 242 -85 -1110 -128 -90 215 -288 -1110 191 115 -1110 -1110 235 -26 -1110 -1110 -190 254 -1110 -187 242 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCGSCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 5.0e-001 0.000000 0.636364 0.363636 0.000000 0.000000 0.409091 0.318182 0.272727 0.000000 0.909091 0.090909 0.000000 0.136364 0.090909 0.727273 0.045455 0.000000 0.636364 0.363636 0.000000 0.000000 0.863636 0.136364 0.000000 0.000000 0.045455 0.954545 0.000000 0.090909 0.909091 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SBCGSCGC MEME-1 regular expression -------------------------------------------------------------------------------- [CG][CGT]CG[CG]CGC -------------------------------------------------------------------------------- Time 7.51 secs. ******************************************************************************** ******************************************************************************** MOTIF KGCWGCWR MEME-2 width = 8 sites = 28 llr = 250 E-value = 1.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGCWGCWR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::5::44 pos.-specific C ::a1:a1: probability G 5a:1a:26 matrix T 5::3::3: bits 2.6 ** ** 2.3 ** ** 2.1 ** ** 1.8 ** ** Relative 1.6 ** ** Entropy 1.3 ** ** * (12.9 bits) 1.0 *** ** * 0.8 *** ** * 0.5 *** ** * 0.3 *** ** * 0.0 -------- Multilevel GGCAGCAG consensus T T TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18331272-18331392 28 2.28e-06 GCAGACGACG GGCAGCAG CCACTTGAAA chr2R:11100872-11100992 98 3.40e-06 TGCGGCATTC GGCAGCGG TTTCCCTCTC chr2R:22571968-22572088 37 3.40e-06 CGTCGACGGC GGCAGCGG CAGCGACCGA chr3L:19329668-19329788 111 5.70e-06 TTCCTTGTTT GGCAGCTG TT chr3L:9872163-9872283 3 8.00e-06 AC GGCTGCAG GTTTGCTAGC chr3R:13524772-13524892 2 1.43e-05 A GGCAGCCG ACAAACCAAT chrX:11531386-11531506 45 2.01e-05 TTCAATGCTT GGCGGCTG TAAGCTAAAA chr3R:28850816-28850936 105 2.24e-05 CGAGTGTACT TGCAGCGG GTTTTTCC chrX:3189923-3190043 56 2.24e-05 CAACAACAAA TGCAGCGG AACAAGAAAA chr3R:6429840-6429960 93 2.71e-05 CCTGGCGGTC TGCAGCTG TAGCTTTTAT chr2L:13928600-13928720 23 3.35e-05 AAGCGAGGGG TGCTGCAG TAGTTCTTGG chrX:20129656-20129776 97 3.35e-05 CGCCCGTATC TGCTGCAG TGTGTGCGCA chr3L:17905830-17905950 109 3.93e-05 GAAGTGCTGG TGCGGCAG TTGG chr3R:13992285-13992405 91 5.27e-05 TTACGTTTGT TGCTGCTG CTTTTTTGCT chr3R:20765456-20765576 106 5.27e-05 CAAGGCAAGC GGCAGCAA CACCGCA chr3R:30343202-30343322 101 5.27e-05 GCTGTGCAGT TGCTGCTG CCACCAAAAG chr3L:10787790-10787910 12 5.27e-05 CGACCAAAAA GGCAGCAA AAAATATTTA chr2L:15422643-15422763 31 5.85e-05 TCTAGCTGCG TGCGGCTG CACCAAAAGC chr3R:23527562-23527682 76 6.31e-05 TTATAAAGCT GGCAGCTA TACTTATCCT chr2R:16197424-16197544 50 7.02e-05 CCAGCTCCGT GGCTGCAA ACACATCCCG chr2R:18432748-18432868 26 7.02e-05 GGAACTTGTA GGCTGCAA GGGGAGAAGG chr3R:5019029-5019149 99 8.70e-05 CTGGCTAATT TGCCGCAG CAGGCAATGG chrX:3454854-3454974 36 9.99e-05 GCAACTTTTG TGCAGCAA ACAAAAAAGA chr2L:6193164-6193284 17 1.07e-04 TTATCTGCGA TGCCGCTG CCCTGCTTGT chr3L:8422280-8422400 6 1.16e-04 GTTGT TGCAGCTA CACTCGAAAC chr2L:9707218-9707338 81 1.19e-04 ACTATTGAAT GGCTGCCA AGTAGTTTTC chrX:1966116-1966236 77 1.29e-04 aaacaacaaA GGCGGCCA GCAGAAATCG chr3L:20445950-20446070 15 1.42e-04 CCGATCCGAT TGCTGCGA CCGCAACGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18331272-18331392 2.3e-06 27_[+2]_85 chr2R:11100872-11100992 3.4e-06 97_[+2]_15 chr2R:22571968-22572088 3.4e-06 36_[+2]_76 chr3L:19329668-19329788 5.7e-06 110_[+2]_2 chr3L:9872163-9872283 8e-06 2_[+2]_110 chr3R:13524772-13524892 1.4e-05 1_[+2]_111 chrX:11531386-11531506 2e-05 44_[+2]_68 chr3R:28850816-28850936 2.2e-05 104_[+2]_8 chrX:3189923-3190043 2.2e-05 55_[+2]_57 chr3R:6429840-6429960 2.7e-05 92_[+2]_20 chr2L:13928600-13928720 3.4e-05 22_[+2]_90 chrX:20129656-20129776 3.4e-05 96_[+2]_16 chr3L:17905830-17905950 3.9e-05 108_[+2]_4 chr3R:13992285-13992405 5.3e-05 90_[+2]_22 chr3R:20765456-20765576 5.3e-05 105_[+2]_7 chr3R:30343202-30343322 5.3e-05 100_[+2]_12 chr3L:10787790-10787910 5.3e-05 11_[+2]_101 chr2L:15422643-15422763 5.8e-05 30_[+2]_82 chr3R:23527562-23527682 6.3e-05 75_[+2]_37 chr2R:16197424-16197544 7e-05 49_[+2]_63 chr2R:18432748-18432868 7e-05 25_[+2]_87 chr3R:5019029-5019149 8.7e-05 98_[+2]_14 chrX:3454854-3454974 0.0001 35_[+2]_77 chr2L:6193164-6193284 0.00011 16_[+2]_96 chr3L:8422280-8422400 0.00012 5_[+2]_107 chr2L:9707218-9707338 0.00012 80_[+2]_32 chrX:1966116-1966236 0.00013 76_[+2]_36 chr3L:20445950-20446070 0.00014 14_[+2]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGCWGCWR width=8 seqs=28 chr2R:18331272-18331392 ( 28) GGCAGCAG 1 chr2R:11100872-11100992 ( 98) GGCAGCGG 1 chr2R:22571968-22572088 ( 37) GGCAGCGG 1 chr3L:19329668-19329788 ( 111) GGCAGCTG 1 chr3L:9872163-9872283 ( 3) GGCTGCAG 1 chr3R:13524772-13524892 ( 2) GGCAGCCG 1 chrX:11531386-11531506 ( 45) GGCGGCTG 1 chr3R:28850816-28850936 ( 105) TGCAGCGG 1 chrX:3189923-3190043 ( 56) TGCAGCGG 1 chr3R:6429840-6429960 ( 93) TGCAGCTG 1 chr2L:13928600-13928720 ( 23) TGCTGCAG 1 chrX:20129656-20129776 ( 97) TGCTGCAG 1 chr3L:17905830-17905950 ( 109) TGCGGCAG 1 chr3R:13992285-13992405 ( 91) TGCTGCTG 1 chr3R:20765456-20765576 ( 106) GGCAGCAA 1 chr3R:30343202-30343322 ( 101) TGCTGCTG 1 chr3L:10787790-10787910 ( 12) GGCAGCAA 1 chr2L:15422643-15422763 ( 31) TGCGGCTG 1 chr3R:23527562-23527682 ( 76) GGCAGCTA 1 chr2R:16197424-16197544 ( 50) GGCTGCAA 1 chr2R:18432748-18432868 ( 26) GGCTGCAA 1 chr3R:5019029-5019149 ( 99) TGCCGCAG 1 chrX:3454854-3454974 ( 36) TGCAGCAA 1 chr2L:6193164-6193284 ( 17) TGCCGCTG 1 chr3L:8422280-8422400 ( 6) TGCAGCTA 1 chr2L:9707218-9707338 ( 81) GGCTGCCA 1 chrX:1966116-1966236 ( 77) GGCGGCCA 1 chr3L:20445950-20446070 ( 15) TGCTGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 1.5e+001 -1145 -1145 161 58 -1145 -1145 261 -1145 -1145 256 -1145 -1145 48 -125 -20 -6 -1145 -1145 261 -1145 -1145 256 -1145 -1145 24 -66 13 -6 11 -1145 197 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.5e+001 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.464286 0.071429 0.142857 0.321429 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.392857 0.107143 0.178571 0.321429 0.357143 0.000000 0.642857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWGCWR MEME-2 regular expression -------------------------------------------------------------------------------- [GT]GC[AT]GC[AT][GA] -------------------------------------------------------------------------------- Time 13.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGTGCA MEME-3 width = 8 sites = 16 llr = 162 E-value = 7.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::8::::a pos.-specific C :a::::9: probability G 9::9:81: matrix T 1:31a2:: bits 2.6 * 2.3 * * 2.1 ** * 1.8 ** * ** Relative 1.6 ** ***** Entropy 1.3 ** ***** (14.6 bits) 1.0 ** ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGTGCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15233527-15233647 107 4.65e-06 GGATTTTCTT GCAGTGCA CTGGAT chr2R:22571968-22572088 9 4.65e-06 TTTCTGTA GCAGTGCA GTTGCAGCTA chrX:3453577-3453697 96 4.65e-06 TTGATTTCTC GCAGTGCA GTCAGCCTTC chr3R:9222538-9222658 103 4.65e-06 AATAAACAGT GCAGTGCA ACGCTAAATG chr2L:487870-487990 74 4.65e-06 TTGATCGAAT GCAGTGCA TTTTGTGATT chr3R:13857461-13857581 5 9.35e-06 TCAG GCTGTGCA CACTGCGAGA chr2R:14111932-14112052 108 9.35e-06 CGATTTTCCC GCTGTGCA CAAAT chr3R:18493903-18494023 28 9.35e-06 AAAAATGTAA GCTGTGCA CTGCTCAAGA chr3R:30343202-30343322 91 9.35e-06 GCACGTTGCC GCTGTGCA GTTGCTGCTG chr2L:4886091-4886211 34 1.88e-05 CCAGTTGCGA GCAGTTCA GTGCGTATAC chr3L:17905830-17905950 53 1.88e-05 GATATGAATT GCAGTTCA TCGGTTGGAC chrX:1979811-1979931 13 1.88e-05 ATATATAAGA GCAGTTCA TTCCCAAAAA chr3L:19329668-19329788 43 3.29e-05 AGGAACAACA GCATTGCA GAAAGACAAT chr3R:20318038-20318158 71 3.29e-05 CAAAGCAGAG GCAGTGGA CGGCGTCTCT chr3L:8319220-8319340 104 3.29e-05 TAGGAAGTCA GCATTGCA AATATTTAA chr2L:18746836-18746956 1 5.20e-05 . TCAGTGCA TATATCAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15233527-15233647 4.7e-06 106_[+3]_6 chr2R:22571968-22572088 4.7e-06 8_[+3]_104 chrX:3453577-3453697 4.7e-06 95_[+3]_17 chr3R:9222538-9222658 4.7e-06 102_[+3]_10 chr2L:487870-487990 4.7e-06 73_[+3]_39 chr3R:13857461-13857581 9.3e-06 4_[+3]_108 chr2R:14111932-14112052 9.3e-06 107_[+3]_5 chr3R:18493903-18494023 9.3e-06 27_[+3]_85 chr3R:30343202-30343322 9.3e-06 90_[+3]_22 chr2L:4886091-4886211 1.9e-05 33_[+3]_79 chr3L:17905830-17905950 1.9e-05 52_[+3]_60 chrX:1979811-1979931 1.9e-05 12_[+3]_100 chr3L:19329668-19329788 3.3e-05 42_[+3]_70 chr3R:20318038-20318158 3.3e-05 70_[+3]_42 chr3L:8319220-8319340 3.3e-05 103_[+3]_9 chr2L:18746836-18746956 5.2e-05 [+3]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGTGCA width=8 seqs=16 chr2R:15233527-15233647 ( 107) GCAGTGCA 1 chr2R:22571968-22572088 ( 9) GCAGTGCA 1 chrX:3453577-3453697 ( 96) GCAGTGCA 1 chr3R:9222538-9222658 ( 103) GCAGTGCA 1 chr2L:487870-487990 ( 74) GCAGTGCA 1 chr3R:13857461-13857581 ( 5) GCTGTGCA 1 chr2R:14111932-14112052 ( 108) GCTGTGCA 1 chr3R:18493903-18494023 ( 28) GCTGTGCA 1 chr3R:30343202-30343322 ( 91) GCTGTGCA 1 chr2L:4886091-4886211 ( 34) GCAGTTCA 1 chr3L:17905830-17905950 ( 53) GCAGTTCA 1 chrX:1979811-1979931 ( 13) GCAGTTCA 1 chr3L:19329668-19329788 ( 43) GCATTGCA 1 chr3R:20318038-20318158 ( 71) GCAGTGGA 1 chr3L:8319220-8319340 ( 104) GCATTGCA 1 chr2L:18746836-18746956 ( 1) TCAGTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 7.8e+000 -1064 -1064 252 -242 -1064 256 -1064 -1064 118 -1064 -1064 -42 -1064 -1064 242 -142 -1064 -1064 -1064 158 -1064 -1064 231 -84 -1064 247 -139 -1064 159 -1064 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.8e+000 0.000000 0.000000 0.937500 0.062500 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.812500 0.187500 0.000000 0.937500 0.062500 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGTGCA MEME-3 regular expression -------------------------------------------------------------------------------- GC[AT]GTGCA -------------------------------------------------------------------------------- Time 20.06 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGGGCG MEME-4 width = 8 sites = 2 llr = 27 E-value = 4.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C ::::::a: probability G :aaaaa:a matrix T :::::::: bits 2.6 ******* 2.3 ******* 2.1 ******* 1.8 ******* Relative 1.6 ******** Entropy 1.3 ******** (19.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGGGGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8145523-8145643 74 1.09e-06 GAGCGCAGAA AGGGGGCG AACAAACAAA chr2L:487870-487990 39 1.09e-06 ATCCAAGGAA AGGGGGCG GGTCAGCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8145523-8145643 1.1e-06 73_[+4]_39 chr2L:487870-487990 1.1e-06 38_[+4]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGGGCG width=8 seqs=2 chr2R:8145523-8145643 ( 74) AGGGGGCG 1 chr2L:487870-487990 ( 39) AGGGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.3e+003 159 -765 -765 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 256 -765 -765 -765 -765 260 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.3e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGGCG MEME-4 regular expression -------------------------------------------------------------------------------- AGGGGGCG -------------------------------------------------------------------------------- Time 26.28 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGGCGGA MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGGCGGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::::a pos.-specific C ::::a::: probability G a:aa:aa: matrix T :::::::: bits 2.6 * ***** 2.3 * ***** 2.1 * ***** 1.8 * ***** Relative 1.6 ******** Entropy 1.3 ******** (18.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GAGGCGGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGCGGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9945219-9945339 71 2.21e-06 TGCTCAGACG GAGGCGGA GGCAAACAAT chrX:3189923-3190043 26 2.21e-06 AATGAGCAAA GAGGCGGA AAAGAGACGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGCGGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9945219-9945339 2.2e-06 70_[+5]_42 chrX:3189923-3190043 2.2e-06 25_[+5]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGCGGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGGCGGA width=8 seqs=2 chr2L:9945219-9945339 ( 71) GAGGCGGA 1 chrX:3189923-3190043 ( 26) GAGGCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGCGGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.0e+004 -765 -765 260 -765 159 -765 -765 -765 -765 -765 260 -765 -765 -765 260 -765 -765 256 -765 -765 -765 -765 260 -765 -765 -765 260 -765 159 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGCGGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGCGGA MEME-5 regular expression -------------------------------------------------------------------------------- GAGGCGGA -------------------------------------------------------------------------------- Time 32.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5579929-5580049 1.80e-01 120 chrX:15313544-15313664 1.10e-01 120 chr3R:19833689-19833809 8.27e-01 120 chr2L:11032773-11032893 6.11e-01 120 chr2R:15245599-15245719 1.86e-03 110_[+1(2.05e-05)]_2 chrX:351134-351254 9.22e-01 120 chr2L:20840180-20840300 9.07e-02 120 chrX:5977879-5977999 1.57e-01 120 chr2R:12733778-12733898 2.10e-01 120 chr3L:11052874-11052994 3.67e-02 77_[+1(1.70e-05)]_35 chr2L:487870-487990 1.43e-08 38_[+4(1.09e-06)]_1_[+1(8.98e-05)]_\ 18_[+3(4.65e-06)]_39 chrX:18057365-18057485 3.69e-01 120 chr2L:6503573-6503693 5.44e-01 120 chr3L:10946253-10946373 6.16e-02 84_[+1(3.74e-05)]_28 chr2R:18346821-18346941 3.00e-01 120 chr3R:14758501-14758621 5.71e-01 120 chr3R:26442905-26443025 4.40e-01 120 chr3L:14554918-14555038 4.45e-01 120 chr2L:6271550-6271670 2.08e-01 120 chr2L:13246411-13246531 4.43e-01 120 chrX:1966116-1966236 2.55e-03 120 chr2L:13925874-13925994 5.79e-01 120 chr3L:21237119-21237239 3.32e-01 120 chr2R:15808714-15808834 2.65e-03 77_[+1(3.63e-06)]_35 chr3L:11701821-11701941 6.79e-01 120 chr3L:15708646-15708766 5.82e-01 120 chrX:14812393-14812513 6.47e-01 120 chrX:1979811-1979931 1.80e-01 12_[+3(1.88e-05)]_100 chrX:20129656-20129776 1.93e-03 96_[+2(3.35e-05)]_16 chr2R:20547707-20547827 9.10e-01 120 chr2L:9669510-9669630 9.33e-01 120 chr2L:18744004-18744124 4.51e-01 120 chr3L:4392967-4393087 8.07e-01 120 chr3R:13393843-13393963 3.17e-04 99_[+1(5.46e-06)]_13 chr2R:24590918-24591038 4.42e-03 67_[+1(4.16e-05)]_45 chr3L:10787790-10787910 1.82e-03 11_[+2(5.27e-05)]_101 chrX:9586138-9586258 1.44e-03 96_[+4(4.20e-05)]_16 chr3R:30343202-30343322 9.28e-04 90_[+3(9.35e-06)]_2_[+2(5.27e-05)]_\ 12 chr3L:1900809-1900929 9.96e-01 120 chr3R:19264908-19265028 1.59e-01 120 chr2R:22727165-22727285 8.91e-01 120 chr2R:23972379-23972499 8.89e-01 120 chrX:11531386-11531506 5.77e-05 7_[+5(8.72e-05)]_29_[+2(2.01e-05)]_\ 68 chr2L:11427766-11427886 1.00e+00 120 chr3L:8319220-8319340 3.27e-03 103_[+3(3.29e-05)]_9 chrX:20244413-20244533 4.97e-01 120 chrX:7699698-7699818 1.02e-01 120 chr2L:3482171-3482291 7.73e-01 120 chrX:3189923-3190043 1.36e-05 25_[+5(2.21e-06)]_22_[+2(2.24e-05)]_\ 57 chr2R:17396024-17396144 9.58e-01 120 chr3R:18624639-18624759 7.23e-01 120 chr3L:5385890-5386010 4.60e-01 120 chr3L:8693726-8693846 9.10e-01 120 chrX:20491002-20491122 2.12e-01 120 chrX:10106885-10107005 4.30e-02 120 chrX:10558225-10558345 2.19e-01 120 chr3L:7617711-7617831 9.05e-01 120 chr3L:14219573-14219693 9.77e-04 86_[+1(4.83e-05)]_26 chr3R:31251473-31251593 9.88e-01 120 chr3R:14424950-14425070 9.42e-01 120 chrX:8714192-8714312 1.55e-01 120 chr2R:17845712-17845832 9.59e-01 120 chrX:1969906-1970026 2.91e-01 120 chr3L:20570258-20570378 7.25e-01 120 chr3L:10792757-10792877 5.71e-01 120 chr3L:21224400-21224520 6.82e-01 120 chr2L:664449-664569 7.42e-01 120 chrX:10577919-10578039 7.65e-01 120 chr3L:4336694-4336814 7.91e-01 120 chr3L:2582462-2582582 9.92e-01 120 chr2R:22558042-22558162 9.97e-01 120 chr3R:7522420-7522540 9.90e-01 120 chr3L:9872163-9872283 5.81e-02 2_[+2(8.00e-06)]_23_[+2(7.02e-05)]_\ 79 chr2L:6193164-6193284 2.37e-03 105_[+1(1.51e-05)]_7 chr3R:20765456-20765576 2.83e-02 105_[+2(5.27e-05)]_7 chr2R:9032808-9032928 5.99e-01 120 chr3R:6429840-6429960 1.87e-05 75_[+1(3.63e-06)]_9_[+2(2.71e-05)]_\ 20 chrX:3454854-3454974 1.01e-01 21_[+2(9.99e-05)]_6_[+2(9.99e-05)]_\ 77 chr2R:18432748-18432868 4.05e-03 25_[+2(7.02e-05)]_87 chr2R:16197424-16197544 1.26e-02 49_[+2(7.02e-05)]_63 chr2L:15422643-15422763 7.69e-03 30_[+2(5.85e-05)]_82 chrX:17524517-17524637 9.16e-01 120 chrX:17686209-17686329 9.94e-01 120 chr2L:604253-604373 8.68e-01 120 chr2R:8588578-8588698 2.40e-01 101_[+5(7.83e-05)]_11 chr2L:7513827-7513947 8.06e-01 120 chr3L:10376784-10376904 9.78e-01 120 chr3R:10282203-10282323 4.00e-01 120 chr3L:13949832-13949952 8.09e-01 120 chr2L:1535333-1535453 8.22e-01 120 chr2R:18331272-18331392 2.60e-03 27_[+2(2.28e-06)]_85 chr3L:7013756-7013876 1.96e-02 120 chr2L:16488003-16488123 4.71e-01 120 chrX:1979150-1979270 4.47e-01 120 chr2L:2478515-2478635 6.09e-01 120 chr3R:7992199-7992319 7.91e-01 120 chr3R:16041738-16041858 6.81e-01 120 chr3R:9222538-9222658 8.84e-04 102_[+3(4.65e-06)]_10 chr2R:15247393-15247513 3.42e-03 103_[+1(6.15e-05)]_9 chrX:4944342-4944462 8.48e-01 120 chr2R:8145523-8145643 7.50e-05 73_[+4(1.09e-06)]_39 chr3R:23416700-23416820 9.84e-01 120 chr2R:17843485-17843605 6.36e-03 1_[+1(8.45e-06)]_111 chr3L:6331846-6331966 9.58e-01 120 chr3L:8333717-8333837 1.00e+00 120 chrX:6052980-6053100 8.91e-01 120 chr2L:13928600-13928720 7.59e-03 22_[+2(3.35e-05)]_90 chr3R:21954201-21954321 5.40e-01 120 chr3L:18626525-18626645 6.46e-01 120 chr2L:9949244-9949364 8.73e-01 120 chrX:5986951-5987071 9.51e-03 60_[+1(2.60e-05)]_52 chrX:15620602-15620722 3.41e-02 73_[+1(5.46e-06)]_39 chr2R:14326138-14326258 7.99e-01 120 chr3R:23527562-23527682 1.01e-01 75_[+2(6.31e-05)]_37 chrX:15651686-15651806 6.36e-01 120 chr2L:9707218-9707338 1.04e-02 120 chr3L:7147928-7148048 9.97e-01 120 chr2L:18746836-18746956 3.93e-01 [+3(5.20e-05)]_112 chr2R:13769533-13769653 7.57e-01 120 chr2L:19441977-19442097 2.88e-01 120 chrX:6354146-6354266 2.07e-01 120 chr3R:18796410-18796530 1.28e-01 120 chr3L:20445950-20446070 6.41e-03 120 chr3R:15923046-15923166 1.64e-01 120 chr3L:18628204-18628324 4.62e-01 120 chr3R:14280439-14280559 8.48e-01 120 chr3R:23504877-23504997 3.75e-01 120 chr3L:12496535-12496655 1.00e+00 120 chr2L:14259938-14260058 9.99e-01 120 chr2R:18243966-18244086 1.00e+00 120 chr3L:21229910-21230030 9.37e-01 120 chr3R:5019029-5019149 1.88e-04 5_[+1(1.15e-05)]_85_[+2(8.70e-05)]_\ 14 chr3R:20318038-20318158 1.72e-04 70_[+3(3.29e-05)]_42 chr2L:15321569-15321689 6.46e-01 120 chr3L:17905830-17905950 2.03e-04 52_[+3(1.88e-05)]_48_[+2(3.93e-05)]_\ 4 chrX:8521661-8521781 2.66e-01 120 chr2L:18753011-18753131 9.42e-01 120 chr2R:18893760-18893880 5.29e-01 120 chr2R:13023084-13023204 5.19e-01 120 chrX:3453577-3453697 1.69e-02 95_[+3(4.65e-06)]_17 chr3R:18633282-18633402 9.84e-01 120 chr3R:28913171-28913291 8.11e-01 120 chr3L:1844700-1844820 6.82e-01 120 chr3R:18493903-18494023 9.56e-02 27_[+3(9.35e-06)]_85 chr3R:22594378-22594498 6.40e-01 120 chr3R:6270110-6270230 2.08e-01 120 chr3L:756533-756653 3.68e-01 120 chr3R:14455608-14455728 6.04e-01 120 chr2R:8646570-8646690 9.36e-01 120 chr3L:8673741-8673861 3.31e-01 120 chr3L:3657005-3657125 9.13e-01 120 chr2L:14318763-14318883 7.58e-01 120 chrX:1988803-1988923 4.72e-04 49_[+5(7.83e-05)]_10_[+1(3.26e-05)]_\ 45 chr3L:8045005-8045125 1.15e-01 120 chr3L:8422280-8422400 7.51e-02 120 chr3L:16972286-16972406 1.00e+00 120 chr2R:10216549-10216669 9.96e-01 120 chr3R:24908143-24908263 9.82e-01 120 chr2L:131469-131589 2.43e-01 120 chr3L:19329668-19329788 1.70e-03 42_[+3(3.29e-05)]_60_[+2(5.70e-06)]_\ 2 chr2R:13025462-13025582 3.43e-02 59_[+1(5.68e-05)]_53 chr2R:17635138-17635258 9.69e-01 120 chr2L:3002095-3002215 1.00e+00 120 chr3R:15567084-15567204 1.00e+00 120 chr3R:25753922-25754042 1.06e-01 120 chr2R:13234980-13235100 8.75e-02 120 chr3R:10028466-10028586 9.92e-01 120 chr2R:11952291-11952411 2.59e-01 120 chr2R:7173192-7173312 8.29e-01 120 chr3L:11155497-11155617 9.95e-01 120 chrX:17914613-17914733 7.71e-01 120 chr2R:18899142-18899262 7.18e-01 120 chr2L:9945219-9945339 1.13e-04 70_[+5(2.21e-06)]_42 chr3R:12297375-12297495 5.84e-01 120 chr2R:14111932-14112052 4.10e-02 107_[+3(9.35e-06)]_5 chr2R:22571968-22572088 2.42e-06 8_[+3(4.65e-06)]_20_[+2(3.40e-06)]_\ 76 chr2R:17243685-17243805 8.05e-01 120 chr2R:21206127-21206247 3.22e-02 120 chr2L:3731181-3731301 9.25e-01 120 chr3R:30344667-30344787 6.99e-01 120 chr3L:21896421-21896541 1.82e-04 71_[+1(3.26e-05)]_41 chr3L:5802116-5802236 4.09e-02 120 chr3R:11969335-11969455 1.34e-01 120 chr3R:29211859-29211979 9.58e-01 120 chr3R:21703494-21703614 5.13e-01 120 chr3R:13857461-13857581 1.51e-02 4_[+3(9.35e-06)]_108 chrX:10960009-10960129 9.24e-01 120 chr2R:8596676-8596796 9.47e-01 120 chr2R:23020490-23020610 9.93e-01 120 chr3R:25459339-25459459 8.91e-01 120 chr3L:11444263-11444383 9.98e-01 120 chr2R:13933422-13933542 2.02e-01 120 chr3L:41830-41950 7.91e-02 120 chr3L:9745525-9745645 7.31e-01 120 chr2R:19445705-19445825 3.72e-02 97_[+3(7.57e-05)]_15 chr2L:2185516-2185636 9.78e-01 120 chr2R:7905124-7905244 2.21e-01 120 chr2R:10847430-10847550 8.48e-01 120 chr2R:14083102-14083222 2.32e-01 120 chr3R:8971954-8972074 6.97e-01 120 chrX:8163608-8163728 1.00e+00 120 chr3R:27706170-27706290 3.29e-03 44_[+1(2.45e-06)]_68 chr3L:13487158-13487278 2.07e-02 70_[+1(1.51e-05)]_42 chr2L:7938589-7938709 9.49e-01 120 chr3L:19234491-19234611 1.15e-01 120 chr3L:21223375-21223495 7.82e-01 120 chr2R:22596919-22597039 7.79e-03 120 chr2L:20328088-20328208 1.63e-01 120 chrX:17692880-17693000 9.99e-01 120 chr3L:18248634-18248754 8.03e-01 120 chr2R:11100872-11100992 1.94e-03 97_[+2(3.40e-06)]_15 chr2L:21683752-21683872 2.54e-01 120 chr3R:13992285-13992405 1.67e-03 90_[+2(5.27e-05)]_22 chr2L:15466090-15466210 8.49e-01 120 chr3R:26332369-26332489 1.08e-03 49_[+1(8.45e-06)]_63 chr2L:17130854-17130974 3.02e-01 120 chr3R:11616456-11616576 5.54e-01 120 chr2L:4886091-4886211 1.26e-01 33_[+3(1.88e-05)]_79 chr2R:11315606-11315726 6.22e-01 120 chr3R:8948152-8948272 9.98e-01 120 chrX:10953448-10953568 9.46e-01 120 chr2L:6276942-6277062 9.15e-01 120 chr3R:24910225-24910345 9.21e-01 120 chr2R:18355918-18356038 7.39e-01 120 chr2R:21000532-21000652 9.78e-02 16_[+1(3.26e-05)]_96 chr3L:6308754-6308874 9.96e-01 120 chr3R:14486593-14486713 9.92e-01 120 chr3R:26019347-26019467 7.66e-01 120 chr2R:15233527-15233647 5.13e-02 106_[+3(4.65e-06)]_6 chr3R:21704552-21704672 7.32e-01 120 chr3L:5626616-5626736 4.77e-01 120 chr2L:20340785-20340905 4.97e-01 120 chrX:18542100-18542220 6.42e-01 120 chrX:16873339-16873459 7.32e-01 120 chr2L:4347163-4347283 5.72e-01 120 chr3R:28850816-28850936 2.10e-02 104_[+2(2.24e-05)]_8 chrX:9344293-9344413 6.23e-05 73_[+1(2.45e-06)]_39 chr3L:14422282-14422402 9.45e-01 120 chr2R:12413266-12413386 6.28e-01 120 chr3R:27181247-27181367 9.92e-01 120 chr3R:6214347-6214467 7.81e-01 120 chr2L:21246806-21246926 9.89e-01 120 chrX:14922520-14922640 8.24e-01 120 chr2L:243904-244024 7.74e-01 120 chr3R:13524772-13524892 2.91e-02 1_[+2(1.43e-05)]_111 chr2L:7949127-7949247 7.23e-01 120 chrX:15123595-15123715 9.99e-01 120 chrX:17679814-17679934 6.33e-01 120 chr3L:16002530-16002650 9.58e-01 120 chrX:20130621-20130741 9.80e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c26n02.farnam.hpc.yale.internal ********************************************************************************