******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6254.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:2657395-2657515 1.0000 120 chr2R:11835021-11835141 1.0000 120 chr3R:10091065-10091185 1.0000 120 chr2R:9443363-9443483 1.0000 120 chr3R:16876779-16876899 1.0000 120 chrX:8398249-8398369 1.0000 120 chr2L:17267457-17267577 1.0000 120 chr2L:4979314-4979434 1.0000 120 chr2R:12169131-12169251 1.0000 120 chr3R:18924717-18924837 1.0000 120 chr3R:15589107-15589227 1.0000 120 chr2L:745871-745991 1.0000 120 chr4:458779-458899 1.0000 120 chrX:3843074-3843194 1.0000 120 chr2R:9439109-9439229 1.0000 120 chr2L:22153357-22153477 1.0000 120 chr2R:17803956-17804076 1.0000 120 chr3L:3552435-3552555 1.0000 120 chr3R:4768974-4769094 1.0000 120 chr2R:24229898-24230018 1.0000 120 chr3R:16933517-16933637 1.0000 120 chr3R:28593140-28593260 1.0000 120 chr2R:10049139-10049259 1.0000 120 chr2L:3171072-3171192 1.0000 120 chrX:768619-768739 1.0000 120 chr3L:14592335-14592455 1.0000 120 chr3R:15972398-15972518 1.0000 120 chr2R:23949287-23949407 1.0000 120 chr3R:30206064-30206184 1.0000 120 chr3R:13912259-13912379 1.0000 120 chr2L:14054500-14054620 1.0000 120 chr3R:20635769-20635889 1.0000 120 chr3R:21581594-21581714 1.0000 120 chr2L:16223918-16224038 1.0000 120 chr2L:12854743-12854863 1.0000 120 chr3L:13993797-13993917 1.0000 120 chr2L:19108738-19108858 1.0000 120 chr2R:15888642-15888762 1.0000 120 chr3R:26867516-26867636 1.0000 120 chrX:8888934-8889054 1.0000 120 chr3L:16221824-16221944 1.0000 120 chr3L:14607760-14607880 1.0000 120 chrX:8682339-8682459 1.0000 120 chr2L:19083435-19083555 1.0000 120 chr3L:18240655-18240775 1.0000 120 chrX:10815015-10815135 1.0000 120 chr3L:22847805-22847925 1.0000 120 chr2L:2999789-2999909 1.0000 120 chr3L:18200577-18200697 1.0000 120 chr2L:5100135-5100255 1.0000 120 chr3L:16712013-16712133 1.0000 120 chrX:19573833-19573953 1.0000 120 chr3L:13994015-13994135 1.0000 120 chr2R:16868077-16868197 1.0000 120 chr3R:30420096-30420216 1.0000 120 chr2L:9614010-9614130 1.0000 120 chr2L:22550292-22550412 1.0000 120 chr3R:30273941-30274061 1.0000 120 chr3R:19879603-19879723 1.0000 120 chr2L:559304-559424 1.0000 120 chr2L:21971125-21971245 1.0000 120 chr2R:6811360-6811480 1.0000 120 chrX:2037198-2037318 1.0000 120 chr3R:6351239-6351359 1.0000 120 chr2L:6048666-6048786 1.0000 120 chr3L:321641-321761 1.0000 120 chr3R:16899164-16899284 1.0000 120 chr2R:12648762-12648882 1.0000 120 chr3R:21414340-21414460 1.0000 120 chr3R:20027998-20028118 1.0000 120 chr2R:2262385-2262505 1.0000 120 chr2L:4463500-4463620 1.0000 120 chr2R:10899345-10899465 1.0000 120 chr2L:16224130-16224250 1.0000 120 chr2L:19791181-19791301 1.0000 120 chr2L:19185960-19186080 1.0000 120 chr2L:16623846-16623966 1.0000 120 chr2L:21886384-21886504 1.0000 120 chr2R:24891541-24891661 1.0000 120 chr2R:20931195-20931315 1.0000 120 chr3R:15291816-15291936 1.0000 120 chr4:1008563-1008683 1.0000 120 chr3L:19171555-19171675 1.0000 120 chr3R:22780257-22780377 1.0000 120 chr2L:3030439-3030559 1.0000 120 chr2R:15568798-15568918 1.0000 120 chrX:15379808-15379928 1.0000 120 chr3R:20634686-20634806 1.0000 120 chr2L:14743463-14743583 1.0000 120 chr3R:16934309-16934429 1.0000 120 chrX:3160608-3160728 1.0000 120 chr3L:4409686-4409806 1.0000 120 chr3L:9122618-9122738 1.0000 120 chr2R:14482579-14482699 1.0000 120 chr2L:5096341-5096461 1.0000 120 chr2L:3172784-3172904 1.0000 120 chr2L:20084274-20084394 1.0000 120 chr2R:20641631-20641751 1.0000 120 chrX:6555089-6555209 1.0000 120 chr2R:10897819-10897939 1.0000 120 chr3L:1568600-1568720 1.0000 120 chrX:3096487-3096607 1.0000 120 chr2R:16094154-16094274 1.0000 120 chr3R:20634887-20635007 1.0000 120 chr2L:3029174-3029294 1.0000 120 chr3L:8514968-8515088 1.0000 120 chr3R:14031565-14031685 1.0000 120 chr3L:7868931-7869051 1.0000 120 chr2L:10226785-10226905 1.0000 120 chr2R:21632917-21633037 1.0000 120 chr2L:11014897-11015017 1.0000 120 chr2R:24022220-24022340 1.0000 120 chrX:17094060-17094180 1.0000 120 chr2L:19181687-19181807 1.0000 120 chr3R:8009302-8009422 1.0000 120 chr3L:550442-550562 1.0000 120 chr3L:16713552-16713672 1.0000 120 chr2R:16271974-16272094 1.0000 120 chr2R:23953985-23954105 1.0000 120 chr3R:14288167-14288287 1.0000 120 chrX:696271-696391 1.0000 120 chr3L:12444211-12444331 1.0000 120 chr3R:16092394-16092514 1.0000 120 chr3L:12717630-12717750 1.0000 120 chrX:3845479-3845599 1.0000 120 chr3R:5575974-5576094 1.0000 120 chr2R:16264557-16264677 1.0000 120 chr3L:17033448-17033568 1.0000 120 chr2R:11232983-11233103 1.0000 120 chr3R:16730877-16730997 1.0000 120 chr3R:13078485-13078605 1.0000 120 chr3L:21202185-21202305 1.0000 120 chrX:2659615-2659735 1.0000 120 chr3L:3845929-3846049 1.0000 120 chr3L:908864-908984 1.0000 120 chr2R:6811561-6811681 1.0000 120 chr3L:1568815-1568935 1.0000 120 chr3R:30270303-30270423 1.0000 120 chr3L:21202406-21202526 1.0000 120 chr2L:20936619-20936739 1.0000 120 chr3L:13163729-13163849 1.0000 120 chr3R:10154374-10154494 1.0000 120 chr3R:31213342-31213462 1.0000 120 chr3R:21192276-21192396 1.0000 120 chr2R:22387245-22387365 1.0000 120 chr2L:18944887-18945007 1.0000 120 chr2L:6479003-6479123 1.0000 120 chr3L:8069993-8070113 1.0000 120 chr2R:18584410-18584530 1.0000 120 chr2L:16858773-16858893 1.0000 120 chr3R:20824193-20824313 1.0000 120 chr2R:18583388-18583508 1.0000 120 chr3L:22840982-22841102 1.0000 120 chr3L:10876554-10876674 1.0000 120 chr2L:10226984-10227104 1.0000 120 chr3R:20837460-20837580 1.0000 120 chr3L:19187723-19187843 1.0000 120 chrX:19640822-19640942 1.0000 120 chr3L:176022-176142 1.0000 120 chr3L:15171957-15172077 1.0000 120 chr2R:13939079-13939199 1.0000 120 chr3R:19628242-19628362 1.0000 120 chr3L:2530579-2530699 1.0000 120 chrX:16654793-16654913 1.0000 120 chr3L:11310930-11311050 1.0000 120 chr3R:11949588-11949708 1.0000 120 chr2R:10049339-10049459 1.0000 120 chrX:17481955-17482075 1.0000 120 chr3R:28546302-28546422 1.0000 120 chr2L:1738240-1738360 1.0000 120 chr3L:18198284-18198404 1.0000 120 chr3L:22843169-22843289 1.0000 120 chr2R:22641180-22641300 1.0000 120 chr3L:20507677-20507797 1.0000 120 chr3L:3141510-3141630 1.0000 120 chr2R:10899133-10899253 1.0000 120 chr3R:21618899-21619019 1.0000 120 chr2L:9193876-9193996 1.0000 120 chr2L:11805991-11806111 1.0000 120 chr2L:4465106-4465226 1.0000 120 chr3L:9546864-9546984 1.0000 120 chr2L:14235064-14235184 1.0000 120 chr2L:20464489-20464609 1.0000 120 chr3L:17404884-17405004 1.0000 120 chr2L:3023149-3023269 1.0000 120 chr2R:21202892-21203012 1.0000 120 chr3L:19670633-19670753 1.0000 120 chr2L:3836495-3836615 1.0000 120 chr3L:3435113-3435233 1.0000 120 chr3L:14146510-14146630 1.0000 120 chr3R:10370571-10370691 1.0000 120 chrX:9048473-9048593 1.0000 120 chr2R:11403208-11403328 1.0000 120 chr3L:3878829-3878949 1.0000 120 chr3R:22220978-22221098 1.0000 120 chr3R:16151458-16151578 1.0000 120 chr2L:3624922-3625042 1.0000 120 chr2L:14405183-14405303 1.0000 120 chr2R:19794348-19794468 1.0000 120 chr2R:22529731-22529851 1.0000 120 chr3R:18053210-18053330 1.0000 120 chr3L:17937477-17937597 1.0000 120 chrX:16746952-16747072 1.0000 120 chr2L:14442720-14442840 1.0000 120 chrX:15866993-15867113 1.0000 120 chr3R:11777145-11777265 1.0000 120 chr3L:1169765-1169885 1.0000 120 chr3R:13018623-13018743 1.0000 120 chr3R:19877632-19877752 1.0000 120 chr3R:4979232-4979352 1.0000 120 chr2L:18790039-18790159 1.0000 120 chr2L:6047930-6048050 1.0000 120 chr3L:7952974-7953094 1.0000 120 chr3R:19108218-19108338 1.0000 120 chr2R:23798551-23798671 1.0000 120 chr3L:13226998-13227118 1.0000 120 chr3R:29782128-29782248 1.0000 120 chr3L:17226472-17226592 1.0000 120 chr3R:20276840-20276960 1.0000 120 chr2L:3841084-3841204 1.0000 120 chr3L:16969712-16969832 1.0000 120 chr2R:6532610-6532730 1.0000 120 chr3L:14028595-14028715 1.0000 120 chr2R:11426865-11426985 1.0000 120 chr3L:22588166-22588286 1.0000 120 chr3R:16254680-16254800 1.0000 120 chr2L:10276645-10276765 1.0000 120 chr2L:11039014-11039134 1.0000 120 chr3R:22886873-22886993 1.0000 120 chr3L:3846128-3846248 1.0000 120 chr3L:20004740-20004860 1.0000 120 chr2R:17737260-17737380 1.0000 120 chr3L:13403174-13403294 1.0000 120 chr3R:31218558-31218678 1.0000 120 chrX:7947017-7947137 1.0000 120 chr3L:1534071-1534191 1.0000 120 chr3L:8066057-8066177 1.0000 120 chr3L:13232906-13233026 1.0000 120 chr2L:18906739-18906859 1.0000 120 chrX:3163079-3163199 1.0000 120 chr2R:19874681-19874801 1.0000 120 chrX:17298087-17298207 1.0000 120 chrX:15618075-15618195 1.0000 120 chr3R:11312502-11312622 1.0000 120 chr3L:18102150-18102270 1.0000 120 chr3L:10271700-10271820 1.0000 120 chr2L:9585997-9586117 1.0000 120 chr2R:16212929-16213049 1.0000 120 chr3L:775074-775194 1.0000 120 chr3L:9547073-9547193 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG6254/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6254.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.214 G 0.215 T 0.288 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.214 G 0.215 T 0.288 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CACCCTGT MEME-1 width = 8 sites = 68 llr = 694 E-value = 1.7e-083 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCCTGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a::::1: pos.-specific C a:aaa::: probability G ::::::9: matrix T :::::a:a bits 2.2 * 2.0 * *** 1.8 ***** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACCCTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCTGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9547073-9547193 95 1.06e-05 GCCCGAAAAG CACCCTGT ATACGCCAGA chrX:7947017-7947137 64 1.06e-05 CGCCTGTAGA CACCCTGT TTCACACACA chr3L:14028595-14028715 70 1.06e-05 CGCTCCAACC CACCCTGT GAGacgcacg chr3L:16969712-16969832 43 1.06e-05 CGGCCCGGAT CACCCTGT GCCCGATCCG chr2L:6047930-6048050 90 1.06e-05 GTGCCGCAGG CACCCTGT AGCGGTAACT chr3R:19877632-19877752 79 1.06e-05 GGACAAGAGT CACCCTGT GATGAACCAC chr3L:3878829-3878949 74 1.06e-05 TAAACCGAAA CACCCTGT CTCTCAAAAG chr2L:11805991-11806111 11 1.06e-05 GTGGCAAAGT CACCCTGT AATTTGATGT chr3L:176022-176142 37 1.06e-05 TGGCTGTGTG CACCCTGT GCTCGTTGCT chr3L:10876554-10876674 87 1.06e-05 GAGGCGGAAG CACCCTGT GTTGATGATG chr3L:22840982-22841102 30 1.06e-05 GGTGGAGGGG CACCCTGT GCGGTTTAGG chr3R:16730877-16730997 97 1.06e-05 TTATACAAGA CACCCTGT ATGAAGGGTT chr3L:17033448-17033568 98 1.06e-05 CTCTTTCGCT CACCCTGT TGCAGCATCA chr3R:8009302-8009422 69 1.06e-05 ATGTAAGGGT CACCCTGT GTTCAAGGCG chrX:17094060-17094180 86 1.06e-05 TTGCGCGGAG CACCCTGT TGAATATCAC chr2R:21632917-21633037 62 1.06e-05 ACCTCGTGGA CACCCTGT GCGCAGATCA chr3L:1568600-1568720 89 1.06e-05 AGACCACGGG CACCCTGT GAGCAAAATA chrX:6555089-6555209 90 1.06e-05 GTGGAAGAGG CACCCTGT GTGCGGCGTC chr2R:20641631-20641751 66 1.06e-05 TTTATTGAAG CACCCTGT ATTTAGCATA chr2L:20084274-20084394 72 1.06e-05 AAACTTTGGA CACCCTGT GCTTGTGCGC chr2R:14482579-14482699 65 1.06e-05 CAAGCAGGAG CACCCTGT TCTGGTTCGG chr3L:4409686-4409806 63 1.06e-05 AACTAGGAGG CACCCTGT GCAAGCCCAA chr2L:3030439-3030559 73 1.06e-05 TTACACGGGG CACCCTGT AAGGGAGGGA chr2L:19185960-19186080 38 1.06e-05 TTGTACAGCA CACCCTGT GGCTGCGAGT chr2R:12648762-12648882 79 1.06e-05 GAAATCGAAT CACCCTGT ATTCTTCACA chr3L:321641-321761 66 1.06e-05 AGGGTAAACA CACCCTGT GGCACATCTC chrX:2037198-2037318 79 1.06e-05 TCAAAAGGGG CACCCTGT ATGGCGTATG chr2R:6811360-6811480 82 1.06e-05 TCCGCCGGAG CACCCTGT AGCGTCTACA chr3R:30273941-30274061 67 1.06e-05 CTTTGCGGAG CACCCTGT ATGTTTATTA chr2R:16868077-16868197 64 1.06e-05 AACTCCGGGT CACCCTGT GTTGCAACTA chr2L:5100135-5100255 52 1.06e-05 TGACACGAAA CACCCTGT AACTGTCAGG chr2L:19083435-19083555 52 1.06e-05 GATTCAGCTG CACCCTGT GCCAAATGTG chr3L:14607760-14607880 57 1.06e-05 gactttGGAT CACCCTGT AAAAAATAGC chr3L:16221824-16221944 66 1.06e-05 TTGCATAAAG CACCCTGT GCCTAATCTA chr2R:15888642-15888762 74 1.06e-05 GTCGTTGAGG CACCCTGT GCataataca chr3L:13993797-13993917 85 1.06e-05 TAATCATGTG CACCCTGT GCACGCAATA chr2L:14054500-14054620 77 1.06e-05 GAAACCGAAG CACCCTGT ATACGCTCTT chr3R:13912259-13912379 51 1.06e-05 TCACCATAAA CACCCTGT TCCGTGTTTG chr2R:23949287-23949407 66 1.06e-05 CGATATGAAT CACCCTGT TTGCCGACTA chr3R:15972398-15972518 38 1.06e-05 CAACACGGGG CACCCTGT CCCCCTCACC chr3L:14592335-14592455 59 1.06e-05 TCGCATAAGT CACCCTGT TGGCATCGCT chr2L:3171072-3171192 52 1.06e-05 GTGGAATGAT CACCCTGT TCCCACAACA chr3L:3552435-3552555 77 1.06e-05 TCTCTGGGGT CACCCTGT TTATTATGTG chr2R:17803956-17804076 54 1.06e-05 TCACAGTGGA CACCCTGT ATGTTGTGCA chr2R:9439109-9439229 52 1.06e-05 AGACTCAAAG CACCCTGT AGCCCGGCAA chrX:8398249-8398369 42 1.06e-05 TTGCATTAAT CACCCTGT TCAACCGCAT chr3R:16876779-16876899 63 1.06e-05 GCACACTAGT CACCCTGT GAATTCCCCT chr3R:10091065-10091185 81 1.06e-05 CATTGGGATA CACCCTGT GCTCGCTTTG chrX:2657395-2657515 73 1.06e-05 AACTACATAT CACCCTGT AGGTAGCTTT chr2R:10899133-10899253 51 2.47e-05 AAGTACGGAG CACCCTAT ACGATCTGTA chr3R:28546302-28546422 66 2.47e-05 CATCCCAACC CACCCTAT GTTTACTTTG chr2L:16858773-16858893 72 2.47e-05 tgttttttga caccctat tcgcggcaat chr2L:16623846-16623966 18 2.47e-05 TCACAATGAA CACCCTAT ACGCATAGCT chr2L:16223918-16224038 81 2.47e-05 TTTCATTGGT CACCCTAT TTCTATTTTA chrX:768619-768739 34 2.47e-05 CAACAAAGAG CACCCTAT TACCACCACT chr2R:16271974-16272094 86 3.25e-05 ATGTATGAGA CACCCTGC AGATCTTGAA chr2R:15568798-15568918 25 3.25e-05 CATGTAGCAG CACCCTGC GCAGAAAACA chr3L:18240655-18240775 69 3.25e-05 GTGCAGTGTA CACCCTGC AGCGTTGCAG chr3L:21202406-21202526 86 4.68e-05 CTCGATGGGG CACCTTGT GAGGAAAAGC chr2R:24229898-24230018 63 4.68e-05 AAACACGAAT CACCTTGT GTGCATGAAT chr2R:6532610-6532730 73 6.28e-05 CGACATCCGC CGCCCTGT CATATTTGTT chr3L:550442-550562 77 6.28e-05 AAACCAGATG CACCCGGT TCTCGAAGTT chr2R:22387245-22387365 42 7.33e-05 GAAAACCTAC CACCCAGT ATCCAAAACC chr2L:10226785-10226905 39 9.46e-05 ATACAGGGTG CACCGTGT ACACTTCCAC chr2L:22153357-22153477 13 9.46e-05 ACTCTGGTGA CAGCCTGT TGCTGCCATA chr3R:30206064-30206184 82 1.09e-04 AAGAAACCCA CACCCTTT CATGTTGCTA chr3L:9546864-9546984 12 1.37e-04 TGACCATGTT TACCCTGT GGCTGTCTTC chrX:3843074-3843194 68 1.37e-04 AAACAGGGTG CACACTGT GCTCACAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCTGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9547073-9547193 1.1e-05 94_[+1]_18 chrX:7947017-7947137 1.1e-05 63_[+1]_49 chr3L:14028595-14028715 1.1e-05 69_[+1]_43 chr3L:16969712-16969832 1.1e-05 42_[+1]_70 chr2L:6047930-6048050 1.1e-05 89_[+1]_23 chr3R:19877632-19877752 1.1e-05 78_[+1]_34 chr3L:3878829-3878949 1.1e-05 73_[+1]_39 chr2L:11805991-11806111 1.1e-05 10_[+1]_102 chr3L:176022-176142 1.1e-05 36_[+1]_76 chr3L:10876554-10876674 1.1e-05 86_[+1]_26 chr3L:22840982-22841102 1.1e-05 29_[+1]_83 chr3R:16730877-16730997 1.1e-05 96_[+1]_16 chr3L:17033448-17033568 1.1e-05 97_[+1]_15 chr3R:8009302-8009422 1.1e-05 68_[+1]_44 chrX:17094060-17094180 1.1e-05 85_[+1]_27 chr2R:21632917-21633037 1.1e-05 61_[+1]_51 chr3L:1568600-1568720 1.1e-05 88_[+1]_24 chrX:6555089-6555209 1.1e-05 89_[+1]_23 chr2R:20641631-20641751 1.1e-05 65_[+1]_47 chr2L:20084274-20084394 1.1e-05 71_[+1]_41 chr2R:14482579-14482699 1.1e-05 64_[+1]_48 chr3L:4409686-4409806 1.1e-05 62_[+1]_50 chr2L:3030439-3030559 1.1e-05 72_[+1]_40 chr2L:19185960-19186080 1.1e-05 37_[+1]_75 chr2R:12648762-12648882 1.1e-05 78_[+1]_34 chr3L:321641-321761 1.1e-05 65_[+1]_47 chrX:2037198-2037318 1.1e-05 78_[+1]_34 chr2R:6811360-6811480 1.1e-05 81_[+1]_31 chr3R:30273941-30274061 1.1e-05 66_[+1]_46 chr2R:16868077-16868197 1.1e-05 63_[+1]_49 chr2L:5100135-5100255 1.1e-05 51_[+1]_61 chr2L:19083435-19083555 1.1e-05 51_[+1]_61 chr3L:14607760-14607880 1.1e-05 56_[+1]_56 chr3L:16221824-16221944 1.1e-05 65_[+1]_47 chr2R:15888642-15888762 1.1e-05 73_[+1]_39 chr3L:13993797-13993917 1.1e-05 84_[+1]_28 chr2L:14054500-14054620 1.1e-05 76_[+1]_36 chr3R:13912259-13912379 1.1e-05 50_[+1]_62 chr2R:23949287-23949407 1.1e-05 65_[+1]_47 chr3R:15972398-15972518 1.1e-05 37_[+1]_75 chr3L:14592335-14592455 1.1e-05 58_[+1]_54 chr2L:3171072-3171192 1.1e-05 51_[+1]_61 chr3L:3552435-3552555 1.1e-05 76_[+1]_36 chr2R:17803956-17804076 1.1e-05 53_[+1]_59 chr2R:9439109-9439229 1.1e-05 51_[+1]_61 chrX:8398249-8398369 1.1e-05 41_[+1]_71 chr3R:16876779-16876899 1.1e-05 62_[+1]_50 chr3R:10091065-10091185 1.1e-05 80_[+1]_32 chrX:2657395-2657515 1.1e-05 72_[+1]_40 chr2R:10899133-10899253 2.5e-05 50_[+1]_62 chr3R:28546302-28546422 2.5e-05 65_[+1]_47 chr2L:16858773-16858893 2.5e-05 71_[+1]_41 chr2L:16623846-16623966 2.5e-05 17_[+1]_95 chr2L:16223918-16224038 2.5e-05 80_[+1]_32 chrX:768619-768739 2.5e-05 33_[+1]_79 chr2R:16271974-16272094 3.3e-05 85_[+1]_27 chr2R:15568798-15568918 3.3e-05 24_[+1]_88 chr3L:18240655-18240775 3.3e-05 68_[+1]_44 chr3L:21202406-21202526 4.7e-05 85_[+1]_27 chr2R:24229898-24230018 4.7e-05 62_[+1]_50 chr2R:6532610-6532730 6.3e-05 72_[+1]_40 chr3L:550442-550562 6.3e-05 76_[+1]_36 chr2R:22387245-22387365 7.3e-05 41_[+1]_71 chr2L:10226785-10226905 9.5e-05 38_[+1]_74 chr2L:22153357-22153477 9.5e-05 12_[+1]_100 chr3R:30206064-30206184 0.00011 81_[+1]_31 chr3L:9546864-9546984 0.00014 11_[+1]_101 chrX:3843074-3843194 0.00014 67_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCTGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCCTGT width=8 seqs=68 chr3L:9547073-9547193 ( 95) CACCCTGT 1 chrX:7947017-7947137 ( 64) CACCCTGT 1 chr3L:14028595-14028715 ( 70) CACCCTGT 1 chr3L:16969712-16969832 ( 43) CACCCTGT 1 chr2L:6047930-6048050 ( 90) CACCCTGT 1 chr3R:19877632-19877752 ( 79) CACCCTGT 1 chr3L:3878829-3878949 ( 74) CACCCTGT 1 chr2L:11805991-11806111 ( 11) CACCCTGT 1 chr3L:176022-176142 ( 37) CACCCTGT 1 chr3L:10876554-10876674 ( 87) CACCCTGT 1 chr3L:22840982-22841102 ( 30) CACCCTGT 1 chr3R:16730877-16730997 ( 97) CACCCTGT 1 chr3L:17033448-17033568 ( 98) CACCCTGT 1 chr3R:8009302-8009422 ( 69) CACCCTGT 1 chrX:17094060-17094180 ( 86) CACCCTGT 1 chr2R:21632917-21633037 ( 62) CACCCTGT 1 chr3L:1568600-1568720 ( 89) CACCCTGT 1 chrX:6555089-6555209 ( 90) CACCCTGT 1 chr2R:20641631-20641751 ( 66) CACCCTGT 1 chr2L:20084274-20084394 ( 72) CACCCTGT 1 chr2R:14482579-14482699 ( 65) CACCCTGT 1 chr3L:4409686-4409806 ( 63) CACCCTGT 1 chr2L:3030439-3030559 ( 73) CACCCTGT 1 chr2L:19185960-19186080 ( 38) CACCCTGT 1 chr2R:12648762-12648882 ( 79) CACCCTGT 1 chr3L:321641-321761 ( 66) CACCCTGT 1 chrX:2037198-2037318 ( 79) CACCCTGT 1 chr2R:6811360-6811480 ( 82) CACCCTGT 1 chr3R:30273941-30274061 ( 67) CACCCTGT 1 chr2R:16868077-16868197 ( 64) CACCCTGT 1 chr2L:5100135-5100255 ( 52) CACCCTGT 1 chr2L:19083435-19083555 ( 52) CACCCTGT 1 chr3L:14607760-14607880 ( 57) CACCCTGT 1 chr3L:16221824-16221944 ( 66) CACCCTGT 1 chr2R:15888642-15888762 ( 74) CACCCTGT 1 chr3L:13993797-13993917 ( 85) CACCCTGT 1 chr2L:14054500-14054620 ( 77) CACCCTGT 1 chr3R:13912259-13912379 ( 51) CACCCTGT 1 chr2R:23949287-23949407 ( 66) CACCCTGT 1 chr3R:15972398-15972518 ( 38) CACCCTGT 1 chr3L:14592335-14592455 ( 59) CACCCTGT 1 chr2L:3171072-3171192 ( 52) CACCCTGT 1 chr3L:3552435-3552555 ( 77) CACCCTGT 1 chr2R:17803956-17804076 ( 54) CACCCTGT 1 chr2R:9439109-9439229 ( 52) CACCCTGT 1 chrX:8398249-8398369 ( 42) CACCCTGT 1 chr3R:16876779-16876899 ( 63) CACCCTGT 1 chr3R:10091065-10091185 ( 81) CACCCTGT 1 chrX:2657395-2657515 ( 73) CACCCTGT 1 chr2R:10899133-10899253 ( 51) CACCCTAT 1 chr3R:28546302-28546422 ( 66) CACCCTAT 1 chr2L:16858773-16858893 ( 72) CACCCTAT 1 chr2L:16623846-16623966 ( 18) CACCCTAT 1 chr2L:16223918-16224038 ( 81) CACCCTAT 1 chrX:768619-768739 ( 34) CACCCTAT 1 chr2R:16271974-16272094 ( 86) CACCCTGC 1 chr2R:15568798-15568918 ( 25) CACCCTGC 1 chr3L:18240655-18240775 ( 69) CACCCTGC 1 chr3L:21202406-21202526 ( 86) CACCTTGT 1 chr2R:24229898-24230018 ( 63) CACCTTGT 1 chr2R:6532610-6532730 ( 73) CGCCCTGT 1 chr3L:550442-550562 ( 77) CACCCGGT 1 chr2R:22387245-22387365 ( 42) CACCCAGT 1 chr2L:10226785-10226905 ( 39) CACCGTGT 1 chr2L:22153357-22153477 ( 13) CAGCCTGT 1 chr3R:30206064-30206184 ( 82) CACCCTTT 1 chr3L:9546864-9546984 ( 12) TACCCTGT 1 chrX:3843074-3843194 ( 68) CACACTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCTGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.49118 E= 1.7e-083 -1273 220 -1273 -429 180 -1273 -386 -1273 -1273 220 -386 -1273 -427 220 -1273 -1273 -1273 216 -386 -329 -427 -1273 -386 175 -168 -1273 206 -429 -1273 -228 -1273 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCTGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 1.7e-083 0.000000 0.985294 0.000000 0.014706 0.985294 0.000000 0.014706 0.000000 0.000000 0.985294 0.014706 0.000000 0.014706 0.985294 0.000000 0.000000 0.000000 0.955882 0.014706 0.029412 0.014706 0.000000 0.014706 0.970588 0.088235 0.000000 0.897059 0.014706 0.000000 0.044118 0.000000 0.955882 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCCTGT MEME-1 regular expression -------------------------------------------------------------------------------- CACCCTGT -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF ACAGGGTG MEME-2 width = 8 sites = 68 llr = 665 E-value = 2.0e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAGGGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:9::::1 pos.-specific C :91:::1: probability G :::aaa:9 matrix T ::::::9: bits 2.2 * 2.0 *** 1.8 *** * 1.6 ****** * Relative 1.3 ******** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAGGGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGGGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:22588166-22588286 56 1.06e-05 TGGGACGCAC ACAGGGTG TGCGGCTTCT chr3R:16151458-16151578 33 1.06e-05 CTTGCCAAGT ACAGGGTG TTTGCCCCTG chr3R:19628242-19628362 23 1.06e-05 TCCTGGTTTT ACAGGGTG CATCCCCTAT chr2R:13939079-13939199 86 1.06e-05 TGGTAAAGTC ACAGGGTG TGTCGCAACA chr3R:20837460-20837580 46 1.06e-05 AAACAGCTCG ACAGGGTG ACACGCTTGT chr2R:18584410-18584530 82 1.06e-05 CGCCATATAA ACAGGGTG ACTTCGCGCA chr3L:8069993-8070113 77 1.06e-05 ATAACTTTTT ACAGGGTG ATGTATGTAG chr2L:6479003-6479123 17 1.06e-05 AGGAAGATGA ACAGGGTG ATCGCAGTCC chr3R:21192276-21192396 79 1.06e-05 CACTTAGCAT ACAGGGTG CTCCAGAATT chr3L:13163729-13163849 56 1.06e-05 CGTTTCCACC ACAGGGTG TCTAGCGTAC chr2R:11232983-11233103 73 1.06e-05 CGGAAGAAAT ACAGGGTG TTCAGGAGCA chrX:3845479-3845599 36 1.06e-05 GTGGAGGCTT ACAGGGTG CTTCGTCTGT chr2L:10226785-10226905 31 1.06e-05 CCGCGATTAT ACAGGGTG CACCGTGTAC chr3L:9122618-9122738 94 1.06e-05 AGATTTATGT ACAGGGTG TCCCAGACAG chr2L:14743463-14743583 74 1.06e-05 AAGGATTCGG ACAGGGTG GACACGGCCA chr3R:20634686-20634806 28 1.06e-05 GTTAACGAAC ACAGGGTG ACTCCTGTTG chrX:15379808-15379928 65 1.06e-05 CAAATCAGCT ACAGGGTG TCCCGATCGC chr3R:22780257-22780377 25 1.06e-05 ATATGCATTT ACAGGGTG CTTGTGCTGT chr3L:19171555-19171675 49 1.06e-05 TGGTGGGAAT ACAGGGTG CCCTACTCCC chr3R:15291816-15291936 62 1.06e-05 GGGCTCAGAT ACAGGGTG GTTCCGGCCC chr2R:20931195-20931315 53 1.06e-05 CTAATTAAAT ACAGGGTG CCACGTGGCG chr2L:19791181-19791301 32 1.06e-05 TGTGGCTGCC ACAGGGTG ACAAAGTCTA chr3R:6351239-6351359 63 1.06e-05 CAAGCGGCGT ACAGGGTG CACCGTGCAA chr2L:9614010-9614130 48 1.06e-05 TTGCTATAGC ACAGGGTG TGCTCTCCAC chr3R:30420096-30420216 74 1.06e-05 ATTTATGGCC ACAGGGTG TAGCGATTTC chrX:19573833-19573953 59 1.06e-05 ATCGCCGTCA ACAGGGTG ACCCTTACCA chr3L:16712013-16712133 83 1.06e-05 CGGCTGGCGT ACAGGGTG CCCGCGGCAC chr3L:18200577-18200697 86 1.06e-05 AGTGGCAGCT ACAGGGTG ATGGTGGTGC chr3L:22847805-22847925 61 1.06e-05 AAATTCAACT ACAGGGTG ACTCGTGCGC chr3R:26867516-26867636 50 1.06e-05 CACCACACTA ACAGGGTG CCCGCCTTCG chr2L:12854743-12854863 53 1.06e-05 CAGGCCAAGT ACAGGGTG CTCTGTGCAA chr3R:20635769-20635889 54 1.06e-05 CAGCAAGGGC ACAGGGTG ACATTGGTGC chr3R:16933517-16933637 69 1.06e-05 CTTGAATTTC ACAGGGTG CTTGCGGTCG chr3R:4768974-4769094 78 1.06e-05 AGCTTTGGCT ACAGGGTG CCACAGGCCA chrX:3843074-3843194 60 1.06e-05 AAACAAAAAA ACAGGGTG CACACTGTGC chr3R:15589107-15589227 58 1.06e-05 GCGCCTAATT ACAGGGTG CCTGTGGTTC chr3R:18924717-18924837 55 1.06e-05 TTTGCACAAT ACAGGGTG TTCTATGTAT chr2R:12169131-12169251 60 1.06e-05 TTCTGCGCGC ACAGGGTG AGTTGGGCAC chr2L:4979314-4979434 80 1.06e-05 GAAATAAAAG ACAGGGTG GTTATTACTC chr2L:17267457-17267577 61 1.06e-05 TGACGTGCCG ACAGGGTG TGTTATGTCT chr2R:9443363-9443483 48 1.06e-05 CCGTGGAGCA ACAGGGTG ACCTATGCAA chr2R:11835021-11835141 52 1.06e-05 GCGCAGCAGC ACAGGGTG CCTCACGTTA chr2L:3029174-3029294 70 1.85e-05 AACGCAAAGG ACAGGGCG ATCTTAGTAC chrX:3160608-3160728 34 1.85e-05 CGTGATGTCC ACAGGGCG Attcgtgtcg chr2L:22153357-22153477 51 1.85e-05 TCCTCCTGAT ACAGGGCG CTCCGTGCAC chr2L:3023149-3023269 27 2.65e-05 CAGAAAATCT ACCGGGTG GACAGTTCTC chr2R:22387245-22387365 57 2.65e-05 AGTATCCAAA ACCGGGTG CCATGTGTTC chr2R:10049139-10049259 26 2.65e-05 TATGTAGTGC ACCGGGTG CCCAAGTGGT chrX:9048473-9048593 53 4.05e-05 GTTACTTGCT ACAGGGTA TTACGGGTAT chr3L:2530579-2530699 56 4.05e-05 CAGCCAAGTT ACAGGGTA TTCCGAGTGA chrX:8682339-8682459 106 4.05e-05 CCCTATAATT ACAGGGTA CATAGAG chr3L:7868931-7869051 53 4.86e-05 AATAACCCAA GCAGGGTG ACCCAAGCAC chr2L:19108738-19108858 39 4.86e-05 CCCAAAGCTG GCAGGGTG ATGGGAGAGG chr2L:3836495-3836615 24 7.70e-05 ACAATCCGGA AAAGGGTG ACCCACTACA chr3L:908864-908984 50 7.70e-05 tgtgtgGAAA AAAGGGTG ACTAATGTGT chr2L:3172784-3172904 56 7.70e-05 TGTAAGGGGA ATAGGGTG TTCTGTGTAC chr2L:21886384-21886504 72 7.70e-05 CTGTGCGTCT ATAGGGTG TTTCGACACC chr2L:22550292-22550412 65 7.70e-05 TGCGCTAGGA ATAGGGTG GGCTGTGTAG chr2L:745871-745991 58 7.70e-05 AAACGCACAT AAAGGGTG CCACATGCAA chr2R:18583388-18583508 71 8.77e-05 GGTCCCGCTT AGAGGGTG ACTACTGTCA chr2L:18944887-18945007 58 8.77e-05 AGTCGCTTTG AGAGGGTG TACTATGTAT chr2R:21632917-21633037 1 1.10e-04 . ACAAGGTG TTTGTTTCAG chr3R:21414340-21414460 100 1.10e-04 ATTGTTTGCC ACAAGGTG CCTGCTGTTC chr4:458779-458899 56 1.10e-04 ccgccctacc acaggggg tttctggcgc chr3L:3846128-3846248 16 1.16e-04 GCATATGGAA ACCGGGCG TGAGCCGAGC chr3R:29782128-29782248 33 1.16e-04 GGTGGGGTTT ACCGGGCG CTTTAAATTT chr2R:10897819-10897939 30 1.30e-04 TCCAAGCAGA ACAGTGTG ACCGCAGTTC chr2L:11014897-11015017 80 1.40e-04 AGTCGTGGGC ACAGGGCA TCCTGTATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGGGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22588166-22588286 1.1e-05 55_[+2]_57 chr3R:16151458-16151578 1.1e-05 32_[+2]_80 chr3R:19628242-19628362 1.1e-05 22_[+2]_90 chr2R:13939079-13939199 1.1e-05 85_[+2]_27 chr3R:20837460-20837580 1.1e-05 45_[+2]_67 chr2R:18584410-18584530 1.1e-05 81_[+2]_31 chr3L:8069993-8070113 1.1e-05 76_[+2]_36 chr2L:6479003-6479123 1.1e-05 16_[+2]_96 chr3R:21192276-21192396 1.1e-05 78_[+2]_34 chr3L:13163729-13163849 1.1e-05 55_[+2]_57 chr2R:11232983-11233103 1.1e-05 72_[+2]_40 chrX:3845479-3845599 1.1e-05 35_[+2]_77 chr2L:10226785-10226905 1.1e-05 30_[+2]_82 chr3L:9122618-9122738 1.1e-05 93_[+2]_19 chr2L:14743463-14743583 1.1e-05 73_[+2]_39 chr3R:20634686-20634806 1.1e-05 27_[+2]_85 chrX:15379808-15379928 1.1e-05 64_[+2]_48 chr3R:22780257-22780377 1.1e-05 24_[+2]_88 chr3L:19171555-19171675 1.1e-05 48_[+2]_64 chr3R:15291816-15291936 1.1e-05 61_[+2]_51 chr2R:20931195-20931315 1.1e-05 52_[+2]_60 chr2L:19791181-19791301 1.1e-05 31_[+2]_81 chr3R:6351239-6351359 1.1e-05 62_[+2]_50 chr2L:9614010-9614130 1.1e-05 47_[+2]_65 chr3R:30420096-30420216 1.1e-05 73_[+2]_39 chrX:19573833-19573953 1.1e-05 58_[+2]_54 chr3L:16712013-16712133 1.1e-05 82_[+2]_30 chr3L:18200577-18200697 1.1e-05 85_[+2]_27 chr3L:22847805-22847925 1.1e-05 60_[+2]_52 chr3R:26867516-26867636 1.1e-05 49_[+2]_63 chr2L:12854743-12854863 1.1e-05 52_[+2]_60 chr3R:20635769-20635889 1.1e-05 53_[+2]_59 chr3R:16933517-16933637 1.1e-05 68_[+2]_44 chr3R:4768974-4769094 1.1e-05 77_[+2]_35 chrX:3843074-3843194 1.1e-05 59_[+2]_53 chr3R:15589107-15589227 1.1e-05 57_[+2]_55 chr3R:18924717-18924837 1.1e-05 54_[+2]_58 chr2R:12169131-12169251 1.1e-05 59_[+2]_53 chr2L:4979314-4979434 1.1e-05 79_[+2]_33 chr2L:17267457-17267577 1.1e-05 60_[+2]_52 chr2R:9443363-9443483 1.1e-05 47_[+2]_65 chr2R:11835021-11835141 1.1e-05 51_[+2]_61 chr2L:3029174-3029294 1.9e-05 69_[+2]_43 chrX:3160608-3160728 1.9e-05 33_[+2]_79 chr2L:22153357-22153477 1.9e-05 50_[+2]_62 chr2L:3023149-3023269 2.7e-05 26_[+2]_86 chr2R:22387245-22387365 2.7e-05 56_[+2]_56 chr2R:10049139-10049259 2.7e-05 25_[+2]_87 chrX:9048473-9048593 4.1e-05 52_[+2]_60 chr3L:2530579-2530699 4.1e-05 55_[+2]_57 chrX:8682339-8682459 4.1e-05 105_[+2]_7 chr3L:7868931-7869051 4.9e-05 52_[+2]_60 chr2L:19108738-19108858 4.9e-05 38_[+2]_74 chr2L:3836495-3836615 7.7e-05 23_[+2]_89 chr3L:908864-908984 7.7e-05 49_[+2]_63 chr2L:3172784-3172904 7.7e-05 55_[+2]_57 chr2L:21886384-21886504 7.7e-05 71_[+2]_41 chr2L:22550292-22550412 7.7e-05 64_[+2]_48 chr2L:745871-745991 7.7e-05 57_[+2]_55 chr2R:18583388-18583508 8.8e-05 70_[+2]_42 chr2L:18944887-18945007 8.8e-05 57_[+2]_55 chr2R:21632917-21633037 0.00011 [+2]_112 chr3R:21414340-21414460 0.00011 99_[+2]_13 chr4:458779-458899 0.00011 55_[+2]_57 chr3L:3846128-3846248 0.00012 15_[+2]_97 chr3R:29782128-29782248 0.00012 32_[+2]_80 chr2R:10897819-10897939 0.00013 29_[+2]_83 chr2L:11014897-11015017 0.00014 79_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGGGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAGGGTG width=8 seqs=68 chr3L:22588166-22588286 ( 56) ACAGGGTG 1 chr3R:16151458-16151578 ( 33) ACAGGGTG 1 chr3R:19628242-19628362 ( 23) ACAGGGTG 1 chr2R:13939079-13939199 ( 86) ACAGGGTG 1 chr3R:20837460-20837580 ( 46) ACAGGGTG 1 chr2R:18584410-18584530 ( 82) ACAGGGTG 1 chr3L:8069993-8070113 ( 77) ACAGGGTG 1 chr2L:6479003-6479123 ( 17) ACAGGGTG 1 chr3R:21192276-21192396 ( 79) ACAGGGTG 1 chr3L:13163729-13163849 ( 56) ACAGGGTG 1 chr2R:11232983-11233103 ( 73) ACAGGGTG 1 chrX:3845479-3845599 ( 36) ACAGGGTG 1 chr2L:10226785-10226905 ( 31) ACAGGGTG 1 chr3L:9122618-9122738 ( 94) ACAGGGTG 1 chr2L:14743463-14743583 ( 74) ACAGGGTG 1 chr3R:20634686-20634806 ( 28) ACAGGGTG 1 chrX:15379808-15379928 ( 65) ACAGGGTG 1 chr3R:22780257-22780377 ( 25) ACAGGGTG 1 chr3L:19171555-19171675 ( 49) ACAGGGTG 1 chr3R:15291816-15291936 ( 62) ACAGGGTG 1 chr2R:20931195-20931315 ( 53) ACAGGGTG 1 chr2L:19791181-19791301 ( 32) ACAGGGTG 1 chr3R:6351239-6351359 ( 63) ACAGGGTG 1 chr2L:9614010-9614130 ( 48) ACAGGGTG 1 chr3R:30420096-30420216 ( 74) ACAGGGTG 1 chrX:19573833-19573953 ( 59) ACAGGGTG 1 chr3L:16712013-16712133 ( 83) ACAGGGTG 1 chr3L:18200577-18200697 ( 86) ACAGGGTG 1 chr3L:22847805-22847925 ( 61) ACAGGGTG 1 chr3R:26867516-26867636 ( 50) ACAGGGTG 1 chr2L:12854743-12854863 ( 53) ACAGGGTG 1 chr3R:20635769-20635889 ( 54) ACAGGGTG 1 chr3R:16933517-16933637 ( 69) ACAGGGTG 1 chr3R:4768974-4769094 ( 78) ACAGGGTG 1 chrX:3843074-3843194 ( 60) ACAGGGTG 1 chr3R:15589107-15589227 ( 58) ACAGGGTG 1 chr3R:18924717-18924837 ( 55) ACAGGGTG 1 chr2R:12169131-12169251 ( 60) ACAGGGTG 1 chr2L:4979314-4979434 ( 80) ACAGGGTG 1 chr2L:17267457-17267577 ( 61) ACAGGGTG 1 chr2R:9443363-9443483 ( 48) ACAGGGTG 1 chr2R:11835021-11835141 ( 52) ACAGGGTG 1 chr2L:3029174-3029294 ( 70) ACAGGGCG 1 chrX:3160608-3160728 ( 34) ACAGGGCG 1 chr2L:22153357-22153477 ( 51) ACAGGGCG 1 chr2L:3023149-3023269 ( 27) ACCGGGTG 1 chr2R:22387245-22387365 ( 57) ACCGGGTG 1 chr2R:10049139-10049259 ( 26) ACCGGGTG 1 chrX:9048473-9048593 ( 53) ACAGGGTA 1 chr3L:2530579-2530699 ( 56) ACAGGGTA 1 chrX:8682339-8682459 ( 106) ACAGGGTA 1 chr3L:7868931-7869051 ( 53) GCAGGGTG 1 chr2L:19108738-19108858 ( 39) GCAGGGTG 1 chr2L:3836495-3836615 ( 24) AAAGGGTG 1 chr3L:908864-908984 ( 50) AAAGGGTG 1 chr2L:3172784-3172904 ( 56) ATAGGGTG 1 chr2L:21886384-21886504 ( 72) ATAGGGTG 1 chr2L:22550292-22550412 ( 65) ATAGGGTG 1 chr2L:745871-745991 ( 58) AAAGGGTG 1 chr2R:18583388-18583508 ( 71) AGAGGGTG 1 chr2L:18944887-18945007 ( 58) AGAGGGTG 1 chr2R:21632917-21633037 ( 1) ACAAGGTG 1 chr3R:21414340-21414460 ( 100) ACAAGGTG 1 chr4:458779-458899 ( 56) ACAGGGGG 1 chr3L:3846128-3846248 ( 16) ACCGGGCG 1 chr3R:29782128-29782248 ( 33) ACCGGGCG 1 chr2R:10897819-10897939 ( 30) ACAGTGTG 1 chr2L:11014897-11015017 ( 80) ACAGGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGGGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.49118 E= 2.0e-069 177 -1273 -287 -1273 -268 205 -287 -270 171 -154 -1273 -1273 -327 -1273 218 -1273 -1273 -1273 220 -429 -1273 -1273 222 -1273 -1273 -128 -386 164 -227 -1273 213 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGGGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.0e-069 0.970588 0.000000 0.029412 0.000000 0.044118 0.882353 0.029412 0.044118 0.926471 0.073529 0.000000 0.000000 0.029412 0.000000 0.970588 0.000000 0.000000 0.000000 0.985294 0.014706 0.000000 0.000000 1.000000 0.000000 0.000000 0.088235 0.014706 0.897059 0.058824 0.000000 0.941176 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGGGTG MEME-2 regular expression -------------------------------------------------------------------------------- ACAGGGTG -------------------------------------------------------------------------------- Time 13.71 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTT MEME-3 width = 8 sites = 12 llr = 127 E-value = 3.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8:::::: pos.-specific C a::a:::: probability G ::a::a:: matrix T :3::a:aa bits 2.2 * ** * 2.0 * ** * 1.8 * ****** 1.6 * ****** Relative 1.3 * ****** Entropy 1.1 * ****** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3878829-3878949 25 1.44e-05 CTGCAGCCAA CAGCTGTT TTTGCGGCCA chr2L:4465106-4465226 62 1.44e-05 AGATGATGAT CAGCTGTT TGTTGTTTAT chr2L:20936619-20936739 8 1.44e-05 TTCAATT CAGCTGTT ATCACCATTA chr2L:5096341-5096461 28 1.44e-05 GTGCTAACAT CAGCTGTT GGGGGCGCGT chr2L:4463500-4463620 11 1.44e-05 GCGTTTATCT CAGCTGTT AAATATGGTA chr2L:6048666-6048786 81 1.44e-05 CACTGGCCAT CAGCTGTT CGCGCAGCGT chr3L:16221824-16221944 48 1.44e-05 TTGCAACAGG CAGCTGTT TTGCATAAAG chr3R:4768974-4769094 107 1.44e-05 TTTAGCCGAG CAGCTGTT GCTCCA chr2L:4979314-4979434 43 1.44e-05 GCGGCCAAAT CAGCTGTT TTCTGCTTAG chr3L:10876554-10876674 59 2.89e-05 ATCCTGGTTG CTGCTGTT GTTGGCCGAT chr3R:21414340-21414460 109 2.89e-05 CACAAGGTGC CTGCTGTT CACA chr2L:19083435-19083555 72 2.89e-05 CAAATGTGTG CTGCTGTT GTTGTTGCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3878829-3878949 1.4e-05 24_[+3]_88 chr2L:4465106-4465226 1.4e-05 61_[+3]_51 chr2L:20936619-20936739 1.4e-05 7_[+3]_105 chr2L:5096341-5096461 1.4e-05 27_[+3]_85 chr2L:4463500-4463620 1.4e-05 10_[+3]_102 chr2L:6048666-6048786 1.4e-05 80_[+3]_32 chr3L:16221824-16221944 1.4e-05 47_[+3]_65 chr3R:4768974-4769094 1.4e-05 106_[+3]_6 chr2L:4979314-4979434 1.4e-05 42_[+3]_70 chr3L:10876554-10876674 2.9e-05 58_[+3]_54 chr3R:21414340-21414460 2.9e-05 108_[+3]_4 chr2L:19083435-19083555 2.9e-05 71_[+3]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTT width=8 seqs=12 chr3L:3878829-3878949 ( 25) CAGCTGTT 1 chr2L:4465106-4465226 ( 62) CAGCTGTT 1 chr2L:20936619-20936739 ( 8) CAGCTGTT 1 chr2L:5096341-5096461 ( 28) CAGCTGTT 1 chr2L:4463500-4463620 ( 11) CAGCTGTT 1 chr2L:6048666-6048786 ( 81) CAGCTGTT 1 chr3L:16221824-16221944 ( 48) CAGCTGTT 1 chr3R:4768974-4769094 ( 107) CAGCTGTT 1 chr2L:4979314-4979434 ( 43) CAGCTGTT 1 chr3L:10876554-10876674 ( 59) CTGCTGTT 1 chr3R:21414340-21414460 ( 109) CTGCTGTT 1 chr2L:19083435-19083555 ( 72) CTGCTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 3.8e+002 -1023 222 -1023 -1023 140 -1023 -1023 -20 -1023 -1023 222 -1023 -1023 222 -1023 -1023 -1023 -1023 -1023 180 -1023 -1023 222 -1023 -1023 -1023 -1023 180 -1023 -1023 -1023 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.8e+002 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 regular expression -------------------------------------------------------------------------------- C[AT]GCTGTT -------------------------------------------------------------------------------- Time 19.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCAGC MEME-4 width = 8 sites = 2 llr = 24 E-value = 1.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C a:aaa::a probability G :a::::a: matrix T :::::::: bits 2.2 ***** ** 2.0 ***** ** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22387245-22387365 100 5.89e-06 AAATGAATAT CGCCCAGC GAGTTGAATA chr2R:16271974-16272094 7 5.89e-06 TCTGCT CGCCCAGC TAAATACCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22387245-22387365 5.9e-06 99_[+4]_13 chr2R:16271974-16272094 5.9e-06 6_[+4]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCAGC width=8 seqs=2 chr2R:22387245-22387365 ( 100) CGCCCAGC 1 chr2R:16271974-16272094 ( 7) CGCCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.4e+005 -765 222 -765 -765 -765 -765 221 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 181 -765 -765 -765 -765 -765 221 -765 -765 222 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 regular expression -------------------------------------------------------------------------------- CGCCCAGC -------------------------------------------------------------------------------- Time 26.08 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCCGG MEME-5 width = 8 sites = 2 llr = 25 E-value = 8.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aaaa:: probability G :a::::aa matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20931195-20931315 82 4.46e-06 CGAGCAAACA CGCCCCGG CAAACAAAcc chr3R:20027998-20028118 68 4.46e-06 GATTGCCATT CGCCCCGG AGCCGCACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20931195-20931315 4.5e-06 81_[+5]_31 chr3R:20027998-20028118 4.5e-06 67_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCCGG width=8 seqs=2 chr2R:20931195-20931315 ( 82) CGCCCCGG 1 chr3R:20027998-20028118 ( 68) CGCCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.1e+004 -765 222 -765 -765 -765 -765 221 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 -765 221 -765 -765 -765 221 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCCGG MEME-5 regular expression -------------------------------------------------------------------------------- CGCCCCGG -------------------------------------------------------------------------------- Time 32.35 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2657395-2657515 1.97e-02 51_[+1(1.06e-05)]_13_[+1(1.06e-05)]_\ 40 chr2R:11835021-11835141 4.54e-03 51_[+2(1.06e-05)]_61 chr3R:10091065-10091185 5.45e-02 80_[+1(1.06e-05)]_32 chr2R:9443363-9443483 2.66e-02 47_[+2(1.06e-05)]_65 chr3R:16876779-16876899 7.78e-02 62_[+1(1.06e-05)]_50 chrX:8398249-8398369 7.79e-02 41_[+1(1.06e-05)]_71 chr2L:17267457-17267577 9.32e-03 2_[+2(8.77e-05)]_50_[+2(1.06e-05)]_\ 52 chr2L:4979314-4979434 1.83e-03 42_[+3(1.44e-05)]_29_[+2(1.06e-05)]_\ 33 chr2R:12169131-12169251 9.01e-03 59_[+2(1.06e-05)]_53 chr3R:18924717-18924837 4.75e-02 54_[+2(1.06e-05)]_58 chr3R:15589107-15589227 1.37e-02 57_[+2(1.06e-05)]_55 chr2L:745871-745991 1.65e-03 57_[+2(7.70e-05)]_55 chr4:458779-458899 2.02e-02 120 chrX:3843074-3843194 1.26e-03 59_[+2(1.06e-05)]_53 chr2R:9439109-9439229 2.40e-02 51_[+1(1.06e-05)]_61 chr2L:22153357-22153477 1.15e-03 12_[+1(9.46e-05)]_30_[+2(1.85e-05)]_\ 62 chr2R:17803956-17804076 1.45e-02 53_[+1(1.06e-05)]_59 chr3L:3552435-3552555 3.73e-02 76_[+1(1.06e-05)]_36 chr3R:4768974-4769094 1.84e-04 77_[+2(1.06e-05)]_21_[+3(1.44e-05)]_\ 6 chr2R:24229898-24230018 1.18e-01 62_[+1(4.68e-05)]_50 chr3R:16933517-16933637 5.02e-02 68_[+2(1.06e-05)]_44 chr3R:28593140-28593260 4.26e-02 120 chr2R:10049139-10049259 1.70e-02 25_[+2(2.65e-05)]_87 chr2L:3171072-3171192 6.27e-03 51_[+1(1.06e-05)]_61 chrX:768619-768739 3.00e-02 33_[+1(2.47e-05)]_79 chr3L:14592335-14592455 5.36e-03 58_[+1(1.06e-05)]_54 chr3R:15972398-15972518 5.19e-02 37_[+1(1.06e-05)]_75 chr2R:23949287-23949407 6.20e-02 65_[+1(1.06e-05)]_47 chr3R:30206064-30206184 1.98e-01 120 chr3R:13912259-13912379 6.20e-02 50_[+1(1.06e-05)]_62 chr2L:14054500-14054620 5.23e-02 76_[+1(1.06e-05)]_36 chr3R:20635769-20635889 6.33e-03 53_[+2(1.06e-05)]_59 chr3R:21581594-21581714 1.31e-01 120 chr2L:16223918-16224038 1.67e-01 80_[+1(2.47e-05)]_32 chr2L:12854743-12854863 6.56e-02 52_[+2(1.06e-05)]_60 chr3L:13993797-13993917 3.23e-02 84_[+1(1.06e-05)]_28 chr2L:19108738-19108858 9.63e-03 38_[+2(4.86e-05)]_74 chr2R:15888642-15888762 9.75e-02 73_[+1(1.06e-05)]_39 chr3R:26867516-26867636 5.39e-03 49_[+2(1.06e-05)]_63 chrX:8888934-8889054 2.87e-01 120 chr3L:16221824-16221944 6.60e-04 47_[+3(1.44e-05)]_10_[+1(1.06e-05)]_\ 47 chr3L:14607760-14607880 6.50e-02 56_[+1(1.06e-05)]_56 chrX:8682339-8682459 4.34e-03 105_[+2(4.05e-05)]_7 chr2L:19083435-19083555 2.16e-03 51_[+1(1.06e-05)]_12_[+3(2.89e-05)]_\ 41 chr3L:18240655-18240775 2.09e-03 68_[+1(3.25e-05)]_44 chrX:10815015-10815135 7.09e-01 120 chr3L:22847805-22847925 8.23e-03 60_[+2(1.06e-05)]_52 chr2L:2999789-2999909 8.01e-01 120 chr3L:18200577-18200697 1.13e-01 85_[+2(1.06e-05)]_27 chr2L:5100135-5100255 9.46e-03 51_[+1(1.06e-05)]_61 chr3L:16712013-16712133 3.01e-02 82_[+2(1.06e-05)]_30 chrX:19573833-19573953 1.37e-01 58_[+2(1.06e-05)]_54 chr3L:13994015-13994135 1.00e+00 120 chr2R:16868077-16868197 8.21e-02 63_[+1(1.06e-05)]_49 chr3R:30420096-30420216 1.30e-02 73_[+2(1.06e-05)]_39 chr2L:9614010-9614130 8.82e-03 47_[+2(1.06e-05)]_65 chr2L:22550292-22550412 3.19e-01 64_[+2(7.70e-05)]_48 chr3R:30273941-30274061 7.66e-02 66_[+1(1.06e-05)]_46 chr3R:19879603-19879723 2.64e-01 120 chr2L:559304-559424 3.53e-01 120 chr2L:21971125-21971245 6.42e-01 120 chr2R:6811360-6811480 3.57e-02 81_[+1(1.06e-05)]_31 chrX:2037198-2037318 2.82e-02 78_[+1(1.06e-05)]_34 chr3R:6351239-6351359 1.48e-02 62_[+2(1.06e-05)]_50 chr2L:6048666-6048786 9.99e-04 80_[+3(1.44e-05)]_32 chr3L:321641-321761 4.71e-03 65_[+1(1.06e-05)]_47 chr3R:16899164-16899284 8.20e-01 120 chr2R:12648762-12648882 5.56e-02 78_[+1(1.06e-05)]_34 chr3R:21414340-21414460 2.50e-03 108_[+3(2.89e-05)]_4 chr3R:20027998-20028118 2.97e-03 67_[+5(4.46e-06)]_45 chr2R:2262385-2262505 5.87e-01 120 chr2L:4463500-4463620 4.41e-02 10_[+3(1.44e-05)]_102 chr2R:10899345-10899465 9.96e-01 120 chr2L:16224130-16224250 6.30e-01 120 chr2L:19791181-19791301 8.95e-03 31_[+2(1.06e-05)]_81 chr2L:19185960-19186080 2.01e-02 37_[+1(1.06e-05)]_75 chr2L:16623846-16623966 1.31e-01 17_[+1(2.47e-05)]_95 chr2L:21886384-21886504 3.37e-01 71_[+2(7.70e-05)]_41 chr2R:24891541-24891661 4.57e-03 24_[+4(2.08e-05)]_88 chr2R:20931195-20931315 1.20e-05 52_[+2(1.06e-05)]_21_[+5(4.46e-06)]_\ 31 chr3R:15291816-15291936 6.88e-03 61_[+2(1.06e-05)]_51 chr4:1008563-1008683 4.24e-01 120 chr3L:19171555-19171675 4.43e-02 48_[+2(1.06e-05)]_64 chr3R:22780257-22780377 6.12e-03 24_[+2(1.06e-05)]_88 chr2L:3030439-3030559 5.04e-03 72_[+1(1.06e-05)]_40 chr2R:15568798-15568918 2.76e-02 24_[+1(3.25e-05)]_88 chrX:15379808-15379928 2.73e-03 64_[+2(1.06e-05)]_22_[+2(1.06e-05)]_\ 18 chr3R:20634686-20634806 1.51e-02 27_[+2(1.06e-05)]_13_[+2(1.85e-05)]_\ 64 chr2L:14743463-14743583 9.20e-03 43_[+2(1.06e-05)]_22_[+2(1.06e-05)]_\ 39 chr3R:16934309-16934429 4.50e-01 120 chrX:3160608-3160728 4.75e-02 33_[+2(1.85e-05)]_79 chr3L:4409686-4409806 2.42e-02 62_[+1(1.06e-05)]_50 chr3L:9122618-9122738 1.01e-01 93_[+2(1.06e-05)]_19 chr2R:14482579-14482699 5.50e-03 64_[+1(1.06e-05)]_48 chr2L:5096341-5096461 5.41e-02 27_[+3(1.44e-05)]_85 chr2L:3172784-3172904 1.88e-01 55_[+2(7.70e-05)]_57 chr2L:20084274-20084394 7.35e-03 71_[+1(1.06e-05)]_41 chr2R:20641631-20641751 1.11e-01 65_[+1(1.06e-05)]_47 chrX:6555089-6555209 4.33e-04 89_[+1(1.06e-05)]_23 chr2R:10897819-10897939 8.22e-02 120 chr3L:1568600-1568720 1.03e-02 88_[+1(1.06e-05)]_24 chrX:3096487-3096607 9.70e-01 120 chr2R:16094154-16094274 6.46e-01 120 chr3R:20634887-20635007 1.00e+00 120 chr2L:3029174-3029294 1.04e-02 69_[+2(1.85e-05)]_43 chr3L:8514968-8515088 8.51e-01 120 chr3R:14031565-14031685 2.34e-01 120 chr3L:7868931-7869051 1.33e-01 52_[+2(4.86e-05)]_60 chr2L:10226785-10226905 5.42e-03 30_[+2(1.06e-05)]_[+1(9.46e-05)]_74 chr2R:21632917-21633037 3.78e-03 61_[+1(1.06e-05)]_51 chr2L:11014897-11015017 1.62e-01 120 chr2R:24022220-24022340 3.32e-01 120 chrX:17094060-17094180 2.90e-02 85_[+1(1.06e-05)]_27 chr2L:19181687-19181807 1.53e-01 120 chr3R:8009302-8009422 2.67e-02 68_[+1(1.06e-05)]_44 chr3L:550442-550562 2.13e-01 76_[+1(6.28e-05)]_36 chr3L:16713552-16713672 8.08e-02 120 chr2R:16271974-16272094 3.66e-04 6_[+4(5.89e-06)]_71_[+1(3.25e-05)]_\ 27 chr2R:23953985-23954105 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4.68e-01 120 chr3L:19670633-19670753 9.97e-01 120 chr2L:3836495-3836615 3.63e-01 23_[+2(7.70e-05)]_89 chr3L:3435113-3435233 9.14e-01 120 chr3L:14146510-14146630 9.04e-01 120 chr3R:10370571-10370691 9.15e-01 120 chrX:9048473-9048593 1.33e-01 52_[+2(4.05e-05)]_60 chr2R:11403208-11403328 5.11e-01 120 chr3L:3878829-3878949 1.25e-04 24_[+3(1.44e-05)]_41_[+1(1.06e-05)]_\ 39 chr3R:22220978-22221098 8.53e-01 120 chr3R:16151458-16151578 1.08e-02 32_[+2(1.06e-05)]_80 chr2L:3624922-3625042 6.62e-01 120 chr2L:14405183-14405303 9.98e-01 120 chr2R:19794348-19794468 1.00e+00 120 chr2R:22529731-22529851 9.99e-01 120 chr3R:18053210-18053330 5.93e-01 120 chr3L:17937477-17937597 7.21e-01 120 chrX:16746952-16747072 6.07e-03 120 chr2L:14442720-14442840 1.60e-01 120 chrX:15866993-15867113 1.00e+00 120 chr3R:11777145-11777265 4.80e-01 120 chr3L:1169765-1169885 8.45e-01 120 chr3R:13018623-13018743 3.48e-01 120 chr3R:19877632-19877752 2.68e-02 78_[+1(1.06e-05)]_34 chr3R:4979232-4979352 9.99e-01 120 chr2L:18790039-18790159 7.83e-01 120 chr2L:6047930-6048050 5.55e-02 89_[+1(1.06e-05)]_23 chr3L:7952974-7953094 2.40e-01 120 chr3R:19108218-19108338 2.29e-01 120 chr2R:23798551-23798671 9.31e-01 120 chr3L:13226998-13227118 5.38e-01 120 chr3R:29782128-29782248 3.51e-01 120 chr3L:17226472-17226592 9.91e-01 120 chr3R:20276840-20276960 5.63e-01 120 chr2L:3841084-3841204 7.65e-01 120 chr3L:16969712-16969832 7.59e-03 42_[+1(1.06e-05)]_70 chr2R:6532610-6532730 4.82e-03 72_[+1(6.28e-05)]_40 chr3L:14028595-14028715 8.11e-03 69_[+1(1.06e-05)]_43 chr2R:11426865-11426985 9.70e-01 120 chr3L:22588166-22588286 1.60e-02 55_[+2(1.06e-05)]_57 chr3R:16254680-16254800 1.20e-01 120 chr2L:10276645-10276765 9.91e-01 120 chr2L:11039014-11039134 5.99e-01 120 chr3R:22886873-22886993 3.24e-01 120 chr3L:3846128-3846248 2.15e-02 120 chr3L:20004740-20004860 9.42e-01 120 chr2R:17737260-17737380 9.97e-01 120 chr3L:13403174-13403294 9.98e-01 120 chr3R:31218558-31218678 1.63e-01 120 chrX:7947017-7947137 5.73e-02 63_[+1(1.06e-05)]_49 chr3L:1534071-1534191 9.46e-01 120 chr3L:8066057-8066177 2.77e-01 120 chr3L:13232906-13233026 7.40e-01 120 chr2L:18906739-18906859 1.00e+00 120 chrX:3163079-3163199 8.44e-01 120 chr2R:19874681-19874801 6.20e-01 120 chrX:17298087-17298207 9.76e-01 120 chrX:15618075-15618195 9.90e-01 120 chr3R:11312502-11312622 1.07e-01 120 chr3L:18102150-18102270 9.99e-01 120 chr3L:10271700-10271820 2.27e-01 120 chr2L:9585997-9586117 9.97e-01 120 chr2R:16212929-16213049 8.80e-01 120 chr3L:775074-775194 6.99e-01 120 chr3L:9547073-9547193 3.47e-02 94_[+1(1.06e-05)]_18 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************