******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5245.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:21040492-21040612 1.0000 120 chr3L:9455811-9455931 1.0000 120 chr3R:5588002-5588122 1.0000 120 chrX:940719-940839 1.0000 120 chr2L:21715156-21715276 1.0000 120 chr2L:21730772-21730892 1.0000 120 chr3R:19648764-19648884 1.0000 120 chr2R:7585714-7585834 1.0000 120 chrX:19813732-19813852 1.0000 120 chr2L:1362370-1362490 1.0000 120 chr3R:6973519-6973639 1.0000 120 chrX:19596143-19596263 1.0000 120 chr2L:10986202-10986322 1.0000 120 chr2L:21648916-21649036 1.0000 120 chr3L:10666635-10666755 1.0000 120 chr2R:12274348-12274468 1.0000 120 chr3R:3846555-3846675 1.0000 120 chr2L:14508839-14508959 1.0000 120 chr3R:12643902-12644022 1.0000 120 chr3L:3288549-3288669 1.0000 120 chr3R:10681732-10681852 1.0000 120 chr2R:15771292-15771412 1.0000 120 chr3L:10766840-10766960 1.0000 120 chr3L:9614069-9614189 1.0000 120 chr3R:22054049-22054169 1.0000 120 chr2L:18287345-18287465 1.0000 120 chr3R:29690585-29690705 1.0000 120 chr2R:7604716-7604836 1.0000 120 chr3R:14077189-14077309 1.0000 120 chr2R:19445987-19446107 1.0000 120 chr3L:2393212-2393332 1.0000 120 chr2R:15818613-15818733 1.0000 120 chr2R:16551923-16552043 1.0000 120 chr3R:31134157-31134277 1.0000 120 chr3L:13411148-13411268 1.0000 120 chr2R:22407644-22407764 1.0000 120 chr2L:20701340-20701460 1.0000 120 chrX:5973519-5973639 1.0000 120 chr3L:14531924-14532044 1.0000 120 chr3L:20710647-20710767 1.0000 120 chrX:20147294-20147414 1.0000 120 chr2L:8746356-8746476 1.0000 120 chr3L:8748987-8749107 1.0000 120 chr3R:10656072-10656192 1.0000 120 chr2L:14701619-14701739 1.0000 120 chr2R:17477098-17477218 1.0000 120 chrX:15653643-15653763 1.0000 120 chr2R:20572566-20572686 1.0000 120 chr3R:24817155-24817275 1.0000 120 chr3L:11484635-11484755 1.0000 120 chr2L:3012872-3012992 1.0000 120 chr3R:16857143-16857263 1.0000 120 chr2R:12727597-12727717 1.0000 120 chr2R:18585118-18585238 1.0000 120 chr3L:1216597-1216717 1.0000 120 chr2R:20590638-20590758 1.0000 120 chr3L:12619177-12619297 1.0000 120 chr3L:12188110-12188230 1.0000 120 chr2L:7073180-7073300 1.0000 120 chr3R:13825493-13825613 1.0000 120 chrX:4498407-4498527 1.0000 120 chr2L:13876843-13876963 1.0000 120 chr3L:8029504-8029624 1.0000 120 chr2L:19285642-19285762 1.0000 120 chr3L:15494412-15494532 1.0000 120 chr2R:23003278-23003398 1.0000 120 chr2L:3675910-3676030 1.0000 120 chr2R:10265447-10265567 1.0000 120 chr2R:12705185-12705305 1.0000 120 chr3R:25077424-25077544 1.0000 120 chr2L:17784809-17784929 1.0000 120 chr2L:6357107-6357227 1.0000 120 chr3L:13845385-13845505 1.0000 120 chr2R:20906674-20906794 1.0000 120 chr3L:20630739-20630859 1.0000 120 chr3R:17056927-17057047 1.0000 120 chrX:5968216-5968336 1.0000 120 chr3L:9456016-9456136 1.0000 120 chr3R:22108464-22108584 1.0000 120 chr2L:18906748-18906868 1.0000 120 chr2R:11738654-11738774 1.0000 120 chr3L:641541-641661 1.0000 120 chr2L:19252528-19252648 1.0000 120 chr3L:9333856-9333976 1.0000 120 chrX:8273854-8273974 1.0000 120 chrX:19009037-19009157 1.0000 120 chr2R:18273489-18273609 1.0000 120 chr2L:19193865-19193985 1.0000 120 chr3L:10756191-10756311 1.0000 120 chr2R:22379282-22379402 1.0000 120 chr3R:22664395-22664515 1.0000 120 chr3R:21887620-21887740 1.0000 120 chrX:16244846-16244966 1.0000 120 chr2R:21535538-21535658 1.0000 120 chr3R:9494436-9494556 1.0000 120 chr2L:15643920-15644040 1.0000 120 chr2L:14212799-14212919 1.0000 120 chr3R:10641358-10641478 1.0000 120 chr3L:1880804-1880924 1.0000 120 chr3R:5300752-5300872 1.0000 120 chr2R:7879137-7879257 1.0000 120 chr3R:22133824-22133944 1.0000 120 chr2L:6179110-6179230 1.0000 120 chr2R:16219675-16219795 1.0000 120 chr2L:1655949-1656069 1.0000 120 chr3R:21594283-21594403 1.0000 120 chr3L:20471046-20471166 1.0000 120 chr3R:8197207-8197327 1.0000 120 chr2L:3598640-3598760 1.0000 120 chr3L:11285189-11285309 1.0000 120 chrX:17175903-17176023 1.0000 120 chr2R:22375039-22375159 1.0000 120 chrX:17820346-17820466 1.0000 120 chr2L:7155031-7155151 1.0000 120 chr2L:19141014-19141134 1.0000 120 chrX:19453300-19453420 1.0000 120 chrX:20506045-20506165 1.0000 120 chr2R:16091921-16092041 1.0000 120 chr3R:16748699-16748819 1.0000 120 chr2L:3852304-3852424 1.0000 120 chr2L:18921391-18921511 1.0000 120 chr2R:25085526-25085646 1.0000 120 chrX:7162649-7162769 1.0000 120 chr3R:9888990-9889110 1.0000 120 chr3R:16573943-16574063 1.0000 120 chr3L:12526937-12527057 1.0000 120 chrX:11153996-11154116 1.0000 120 chrX:6621662-6621782 1.0000 120 chr2L:3435251-3435371 1.0000 120 chr3L:11303978-11304098 1.0000 120 chrX:18635425-18635545 1.0000 120 chrX:14622356-14622476 1.0000 120 chrX:20631259-20631379 1.0000 120 chr2L:5771333-5771453 1.0000 120 chrX:3068390-3068510 1.0000 120 chr3R:28857430-28857550 1.0000 120 chr2L:16816081-16816201 1.0000 120 chr3L:10899334-10899454 1.0000 120 chr2L:3472386-3472506 1.0000 120 chr2L:7566757-7566877 1.0000 120 chr3L:15199364-15199484 1.0000 120 chr2L:9775357-9775477 1.0000 120 chr4:406940-407060 1.0000 120 chr3R:28904292-28904412 1.0000 120 chr2R:9165087-9165207 1.0000 120 chrX:7710942-7711062 1.0000 120 chrX:18517541-18517661 1.0000 120 chr3L:10694050-10694170 1.0000 120 chr2L:6797595-6797715 1.0000 120 chr2L:7258222-7258342 1.0000 120 chr3R:23722093-23722213 1.0000 120 chr3L:1578618-1578738 1.0000 120 chr3R:14357538-14357658 1.0000 120 chr2L:14562419-14562539 1.0000 120 chr3L:15977651-15977771 1.0000 120 chr2L:5278488-5278608 1.0000 120 chr3L:10350848-10350968 1.0000 120 chr3L:21047174-21047294 1.0000 120 chr3L:2879818-2879938 1.0000 120 chrX:6110045-6110165 1.0000 120 chr2L:19817246-19817366 1.0000 120 chr3L:8399200-8399320 1.0000 120 chrX:10600666-10600786 1.0000 120 chr3R:29522314-29522434 1.0000 120 chrX:13253278-13253398 1.0000 120 chr3L:295153-295273 1.0000 120 chrX:12015061-12015181 1.0000 120 chr2L:9576794-9576914 1.0000 120 chr3R:9935040-9935160 1.0000 120 chr2L:7635267-7635387 1.0000 120 chr2L:3444900-3445020 1.0000 120 chr3L:16452434-16452554 1.0000 120 chr3R:16834772-16834892 1.0000 120 chrX:9352830-9352950 1.0000 120 chr3R:14095518-14095638 1.0000 120 chr3R:17231602-17231722 1.0000 120 chrX:12242572-12242692 1.0000 120 chr2R:19128016-19128136 1.0000 120 chr3L:16544339-16544459 1.0000 120 chr2L:7616936-7617056 1.0000 120 chrX:3367410-3367530 1.0000 120 chr2R:11628156-11628276 1.0000 120 chrX:6615579-6615699 1.0000 120 chr2R:10196385-10196505 1.0000 120 chr3L:5988765-5988885 1.0000 120 chr3L:16770008-16770128 1.0000 120 chr3R:24206899-24207019 1.0000 120 chr3L:8445143-8445263 1.0000 120 chrX:5972199-5972319 1.0000 120 chr3R:9344955-9345075 1.0000 120 chr2L:1575687-1575807 1.0000 120 chr3L:6817076-6817196 1.0000 120 chr3L:8675920-8676040 1.0000 120 chr3L:14999644-14999764 1.0000 120 chrX:16967564-16967684 1.0000 120 chr3R:10628452-10628572 1.0000 120 chr3R:26436669-26436789 1.0000 120 chr2L:7632927-7633047 1.0000 120 chr2R:18514015-18514135 1.0000 120 chr3R:16919169-16919289 1.0000 120 chr2R:23574913-23575033 1.0000 120 chr3L:10745739-10745859 1.0000 120 chrX:6059255-6059375 1.0000 120 chr3R:26172220-26172340 1.0000 120 chr3R:25004867-25004987 1.0000 120 chrX:15319320-15319440 1.0000 120 chrX:18921147-18921267 1.0000 120 chr3R:20948092-20948212 1.0000 120 chrX:9652139-9652259 1.0000 120 chr3L:554754-554874 1.0000 120 chr2L:19376280-19376400 1.0000 120 chr3R:10648909-10649029 1.0000 120 chr3L:13197670-13197790 1.0000 120 chrX:11548819-11548939 1.0000 120 chr3R:10564384-10564504 1.0000 120 chrX:12221572-12221692 1.0000 120 chr2L:8834959-8835079 1.0000 120 chr2L:10468567-10468687 1.0000 120 chr3L:5789861-5789981 1.0000 120 chr2R:23652374-23652494 1.0000 120 chr3L:20194810-20194930 1.0000 120 chr2R:14913265-14913385 1.0000 120 chr3R:15652764-15652884 1.0000 120 chr2L:14245608-14245728 1.0000 120 chr3L:13450282-13450402 1.0000 120 chr3L:7360442-7360562 1.0000 120 chr3R:5588201-5588321 1.0000 120 chr3L:18840634-18840754 1.0000 120 chrX:1380514-1380634 1.0000 120 chr2L:5245744-5245864 1.0000 120 chr2L:3566681-3566801 1.0000 120 chrX:11629104-11629224 1.0000 120 chr2R:20154002-20154122 1.0000 120 chr3R:26444306-26444426 1.0000 120 chr3L:5554578-5554698 1.0000 120 chr3L:12501432-12501552 1.0000 120 chr3L:14545551-14545671 1.0000 120 chrX:13644167-13644287 1.0000 120 chr3R:10696530-10696650 1.0000 120 chr3L:7151988-7152108 1.0000 120 chr3R:30413878-30413998 1.0000 120 chr2L:13073916-13074036 1.0000 120 chr2R:24965167-24965287 1.0000 120 chrX:4010968-4011088 1.0000 120 chr2L:3775967-3776087 1.0000 120 chr3R:9605219-9605339 1.0000 120 chr3L:772386-772506 1.0000 120 chr3R:17584167-17584287 1.0000 120 chr3L:1029745-1029865 1.0000 120 chrX:7617045-7617165 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG5245/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5245.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.305 C 0.193 G 0.193 T 0.308 Background letter frequencies (from file dataset with add-one prior applied): A 0.305 C 0.193 G 0.193 T 0.308 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCCAYC MEME-1 width = 8 sites = 50 llr = 468 E-value = 8.6e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::8:1 pos.-specific C :a:aa268 probability G 9:9:::1: matrix T ::1:::41 bits 2.4 * * 2.1 * ** 1.9 **** 1.7 ***** Relative 1.4 ***** Entropy 1.2 ***** * (13.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCACC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23652374-23652494 52 3.04e-06 AATAGGAACA GCGCCACC TGCTTGCGAA chr3R:20948092-20948212 90 3.04e-06 TGCTTATACA GCGCCACC TATGTTTGGA chr3R:16919169-16919289 56 3.04e-06 CCGCCTTGCA GCGCCACC TGGCCTTGGT chr2L:3472386-3472506 82 3.04e-06 TGTGCAGATG GCGCCACC ATGACGCGCG chr2L:16816081-16816201 55 3.04e-06 TCAGTCGATT GCGCCACC TTGTGCGCGA chrX:17820346-17820466 23 3.04e-06 GTGTGCACTG GCGCCACC TAGGTATGCT chr2L:15643920-15644040 27 3.04e-06 CGATACACTG GCGCCACC TGCACGTCAA chr3L:641541-641661 19 3.04e-06 CGCGGGAGCA GCGCCACC GTTCCCTTCG chr2R:16551923-16552043 82 3.04e-06 ATACAAAAGA GCGCCACC TAGAAAATAT chr2R:15818613-15818733 81 3.04e-06 CACAAATGCA GCGCCACC TATGCGGGCA chr2R:12274348-12274468 88 3.04e-06 TAAGGTCAGC GCGCCACC TGGCGACGGC chr3R:16834772-16834892 96 7.90e-06 GAGCACATTG GCGCCATC TGTATTCCGT chr2L:19817246-19817366 12 7.90e-06 AAGTAATATA GCGCCATC TGTCGGTTTT chr2L:7258222-7258342 91 7.90e-06 AGCGCCCAGT GCGCCATC TAGCAGAACT chrX:11153996-11154116 43 7.90e-06 CTTTGCCACA GCGCCATC TGCTGGAAAT chr2R:25085526-25085646 47 7.90e-06 AAAGTTGAGT GCGCCATC TTTTGCTTGA chrX:16244846-16244966 50 7.90e-06 CCATCTCGTG GCGCCATC TATGGACAGA chr3R:31134157-31134277 33 7.90e-06 AGTCAGCCAG GCGCCATC TATTGGCAGG chr3L:3288549-3288669 38 7.90e-06 TTATTTTGTG GCGCCATC TACATAACAG chr2L:1362370-1362490 62 7.90e-06 ACTTCTGCCA GCGCCATC TGTTGAGCGC chrX:18517541-18517661 76 1.59e-05 GTTCCAGACG GCGCCCTC TGGCGGCGGA chr3L:10899334-10899454 48 1.59e-05 TGTTGTAGTG GCGCCCTC TTTTGTTTTT chr2L:5771333-5771453 12 1.59e-05 TTCTACAGCA GCGCCCTC TCACAGATTT chr3L:13845385-13845505 38 1.59e-05 TGACACCAAT GCGCCCTC TAGCGAGCTA chr3R:16857143-16857263 59 1.59e-05 AAACAACACA GCGCCCTC TTTTGCGCTA chrX:16967564-16967684 72 2.07e-05 TCGGCAGGGG GCGCCACA ACGACGTCCT chrX:6110045-6110165 61 2.07e-05 ACGCCAGGTG GCGCCACA CATGTAGTAA chr3L:9456016-9456136 56 2.07e-05 gCAGCGACAG GCGCCACA ATGCAACCCT chr2L:13876843-13876963 74 2.07e-05 ACATTAACTG GCGCCACA AATATTTTTC chr2L:10986202-10986322 30 2.56e-05 CTGCACACTA GCTCCACC TAGCGGCAGT chr3R:19648764-19648884 43 2.56e-05 GTGCACACAG GCTCCACC TAGCGAAGCT chrX:7162649-7162769 43 3.04e-05 TGACCACCAA ACGCCACC TGTTGGCCGG chr3L:9333856-9333976 15 3.04e-05 CGTAATTAAG ACGCCACC TGTTCGGCTA chr3R:6973519-6973639 36 3.04e-05 AAAATTTAAA ACGCCACC TATTGGCGCA chr2R:15771292-15771412 32 3.23e-05 GCTTCAATAT GCGCCCGC TCTCGGCAAG chr3R:16573943-16574063 97 3.72e-05 GCACCAGGTG GCGCCACT TCCGCGCGCG chr3L:9614069-9614189 109 3.72e-05 CACTTTTGGG GCGCCACT AAGG chrX:940719-940839 112 4.22e-05 TGTGCTCTTT GCGCCGCC T chr2R:7585714-7585834 42 5.29e-05 GCTTCGTTTG GCGCCCCA TGGAAAATGA chr2R:22407644-22407764 23 6.06e-05 AAGCACCCCG GCTCCATC TCTGCTTCCG chr2L:17784809-17784929 68 7.15e-05 TATACAGATG GCGCCACG AATTTGATGA chrX:15653643-15653763 55 7.15e-05 AACGGCAAGA GCGACACC TATCGTCAGT chr3L:16770008-16770128 33 7.92e-05 AATGGCCAAG ACGCCATC TGGCGATAGG chrX:5972199-5972319 62 1.01e-04 CACCTAAGGT GCGCCCCT TAAGAAAACC chr3R:16748699-16748819 54 1.01e-04 CAACTCAGTG CCGCCATC TGACGTAAGA chr3L:772386-772506 86 1.03e-04 GTATTTTATC CCGCCCCC TTTCGACCAA chrX:7710942-7711062 75 1.13e-04 TCCATAGATG GCGCCAGA TGTTTCGGTT chr3L:7360442-7360562 108 1.35e-04 AACCGGCTCC GCTCCAGC TACGC chrX:19009037-19009157 57 1.35e-04 AATTTTATGA GCTCCAGC TCGTGATTCA chr3L:13411148-13411268 56 1.35e-04 AACGTTTGCA GCGACATC TAGTGGTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23652374-23652494 3e-06 51_[+1]_61 chr3R:20948092-20948212 3e-06 89_[+1]_23 chr3R:16919169-16919289 3e-06 55_[+1]_57 chr2L:3472386-3472506 3e-06 81_[+1]_31 chr2L:16816081-16816201 3e-06 54_[+1]_58 chrX:17820346-17820466 3e-06 22_[+1]_90 chr2L:15643920-15644040 3e-06 26_[+1]_86 chr3L:641541-641661 3e-06 18_[+1]_94 chr2R:16551923-16552043 3e-06 81_[+1]_31 chr2R:15818613-15818733 3e-06 80_[+1]_32 chr2R:12274348-12274468 3e-06 87_[+1]_25 chr3R:16834772-16834892 7.9e-06 95_[+1]_17 chr2L:19817246-19817366 7.9e-06 11_[+1]_101 chr2L:7258222-7258342 7.9e-06 90_[+1]_22 chrX:11153996-11154116 7.9e-06 42_[+1]_70 chr2R:25085526-25085646 7.9e-06 46_[+1]_66 chrX:16244846-16244966 7.9e-06 49_[+1]_63 chr3R:31134157-31134277 7.9e-06 32_[+1]_80 chr3L:3288549-3288669 7.9e-06 37_[+1]_75 chr2L:1362370-1362490 7.9e-06 61_[+1]_51 chrX:18517541-18517661 1.6e-05 75_[+1]_37 chr3L:10899334-10899454 1.6e-05 47_[+1]_65 chr2L:5771333-5771453 1.6e-05 11_[+1]_101 chr3L:13845385-13845505 1.6e-05 37_[+1]_75 chr3R:16857143-16857263 1.6e-05 58_[+1]_54 chrX:16967564-16967684 2.1e-05 71_[+1]_41 chrX:6110045-6110165 2.1e-05 60_[+1]_52 chr3L:9456016-9456136 2.1e-05 55_[+1]_57 chr2L:13876843-13876963 2.1e-05 73_[+1]_39 chr2L:10986202-10986322 2.6e-05 29_[+1]_83 chr3R:19648764-19648884 2.6e-05 42_[+1]_70 chrX:7162649-7162769 3e-05 42_[+1]_70 chr3L:9333856-9333976 3e-05 14_[+1]_98 chr3R:6973519-6973639 3e-05 35_[+1]_77 chr2R:15771292-15771412 3.2e-05 31_[+1]_81 chr3R:16573943-16574063 3.7e-05 96_[+1]_16 chr3L:9614069-9614189 3.7e-05 108_[+1]_4 chrX:940719-940839 4.2e-05 111_[+1]_1 chr2R:7585714-7585834 5.3e-05 41_[+1]_71 chr2R:22407644-22407764 6.1e-05 22_[+1]_90 chr2L:17784809-17784929 7.2e-05 67_[+1]_45 chrX:15653643-15653763 7.2e-05 54_[+1]_58 chr3L:16770008-16770128 7.9e-05 32_[+1]_80 chrX:5972199-5972319 0.0001 61_[+1]_51 chr3R:16748699-16748819 0.0001 53_[+1]_59 chr3L:772386-772506 0.0001 85_[+1]_27 chrX:7710942-7711062 0.00011 74_[+1]_38 chr3L:7360442-7360562 0.00013 107_[+1]_5 chrX:19009037-19009157 0.00013 56_[+1]_56 chr3L:13411148-13411268 0.00013 55_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAYC width=8 seqs=50 chr2R:23652374-23652494 ( 52) GCGCCACC 1 chr3R:20948092-20948212 ( 90) GCGCCACC 1 chr3R:16919169-16919289 ( 56) GCGCCACC 1 chr2L:3472386-3472506 ( 82) GCGCCACC 1 chr2L:16816081-16816201 ( 55) GCGCCACC 1 chrX:17820346-17820466 ( 23) GCGCCACC 1 chr2L:15643920-15644040 ( 27) GCGCCACC 1 chr3L:641541-641661 ( 19) GCGCCACC 1 chr2R:16551923-16552043 ( 82) GCGCCACC 1 chr2R:15818613-15818733 ( 81) GCGCCACC 1 chr2R:12274348-12274468 ( 88) GCGCCACC 1 chr3R:16834772-16834892 ( 96) GCGCCATC 1 chr2L:19817246-19817366 ( 12) GCGCCATC 1 chr2L:7258222-7258342 ( 91) GCGCCATC 1 chrX:11153996-11154116 ( 43) GCGCCATC 1 chr2R:25085526-25085646 ( 47) GCGCCATC 1 chrX:16244846-16244966 ( 50) GCGCCATC 1 chr3R:31134157-31134277 ( 33) GCGCCATC 1 chr3L:3288549-3288669 ( 38) GCGCCATC 1 chr2L:1362370-1362490 ( 62) GCGCCATC 1 chrX:18517541-18517661 ( 76) GCGCCCTC 1 chr3L:10899334-10899454 ( 48) GCGCCCTC 1 chr2L:5771333-5771453 ( 12) GCGCCCTC 1 chr3L:13845385-13845505 ( 38) GCGCCCTC 1 chr3R:16857143-16857263 ( 59) GCGCCCTC 1 chrX:16967564-16967684 ( 72) GCGCCACA 1 chrX:6110045-6110165 ( 61) GCGCCACA 1 chr3L:9456016-9456136 ( 56) GCGCCACA 1 chr2L:13876843-13876963 ( 74) GCGCCACA 1 chr2L:10986202-10986322 ( 30) GCTCCACC 1 chr3R:19648764-19648884 ( 43) GCTCCACC 1 chrX:7162649-7162769 ( 43) ACGCCACC 1 chr3L:9333856-9333976 ( 15) ACGCCACC 1 chr3R:6973519-6973639 ( 36) ACGCCACC 1 chr2R:15771292-15771412 ( 32) GCGCCCGC 1 chr3R:16573943-16574063 ( 97) GCGCCACT 1 chr3L:9614069-9614189 ( 109) GCGCCACT 1 chrX:940719-940839 ( 112) GCGCCGCC 1 chr2R:7585714-7585834 ( 42) GCGCCCCA 1 chr2R:22407644-22407764 ( 23) GCTCCATC 1 chr2L:17784809-17784929 ( 68) GCGCCACG 1 chrX:15653643-15653763 ( 55) GCGACACC 1 chr3L:16770008-16770128 ( 33) ACGCCATC 1 chrX:5972199-5972319 ( 62) GCGCCCCT 1 chr3R:16748699-16748819 ( 54) CCGCCATC 1 chr3L:772386-772506 ( 86) CCGCCCCC 1 chrX:7710942-7711062 ( 75) GCGCCAGA 1 chr3L:7360442-7360562 ( 108) GCTCCAGC 1 chrX:19009037-19009157 ( 57) GCTCCAGC 1 chr3L:13411148-13411268 ( 56) GCGACATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.63034 E= 8.6e-030 -193 -227 219 -1229 -1229 237 -1229 -1229 -1229 -1229 222 -162 -293 231 -1229 -1229 -1229 237 -1229 -1229 139 -10 -327 -1229 -1229 153 -127 22 -135 205 -327 -236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 8.6e-030 0.080000 0.040000 0.880000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.040000 0.960000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.180000 0.020000 0.000000 0.000000 0.560000 0.080000 0.360000 0.120000 0.800000 0.020000 0.060000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 regular expression -------------------------------------------------------------------------------- GCGCCA[CT]C -------------------------------------------------------------------------------- Time 7.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GRTGGCGC MEME-2 width = 8 sites = 29 llr = 288 E-value = 9.9e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :61::::: pos.-specific C :1:::a:9 probability G a3:a7:a: matrix T ::9:3::1 bits 2.4 * * * 2.1 * * ** 1.9 * * *** 1.7 * * *** Relative 1.4 * ***** Entropy 1.2 * ***** (14.4 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GATGGCGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23722093-23722213 75 4.86e-06 ATAGTCAACA GATGGCGC TCTAAAATCT chrX:7710942-7711062 25 4.86e-06 TTAAGTCATA GATGGCGC TCGCTGTAAC chr2L:3472386-3472506 30 4.86e-06 TTCAGATACA GATGGCGC TCACGCCAAT chr3L:12526937-12527057 81 4.86e-06 CTGACCGCCA GATGGCGC GTTTCAATTC chr3R:16748699-16748819 33 4.86e-06 CGAATCCATA GATGGCGC ATGCAACTCA chr2R:20906674-20906794 80 4.86e-06 ACCAACGGTA GATGGCGC CAGTGCAACA chr3L:3288549-3288669 91 4.86e-06 AAGCTGTGTA GATGGCGC TGCTGAGTTC chr2R:12274348-12274468 59 4.86e-06 ATTGCCGAAA GATGGCGC CCATGGCGCA chr2L:9576794-9576914 82 7.93e-06 TTTTTAACTA GGTGGCGC AGGAGATCAT chr2L:5278488-5278608 38 7.93e-06 TAGCGAGCAC GGTGGCGC GCTCTGGAGG chrX:18635425-18635545 70 7.93e-06 TTCTCTCCTA GGTGGCGC TTTATTACTA chr2L:15643920-15644040 100 7.93e-06 TTATCCGGCA GGTGGCGC TGGCCAAATT chr2R:21535538-21535658 65 7.93e-06 ATTTACGCTA GGTGGCGC TTGGCAGGAC chr3L:8748987-8749107 38 7.93e-06 CTCACACATA GGTGGCGC ATTCTGCACA chr3R:16919169-16919289 107 1.57e-05 ACCAACACAA GATGTCGC TCTCCG chr4:406940-407060 38 1.57e-05 ACAAATCACA GATGTCGC TTTGATACTG chrX:17175903-17176023 84 1.57e-05 TAGGTGTCTA GATGTCGC TGTTAACTTG chr2L:6797595-6797715 66 2.06e-05 TACGCCGCTA GGTGTCGC TTAGTTAAAA chr3R:5300752-5300872 59 2.06e-05 CCTACCGCCA GGTGTCGC CCGTGGAGCG chrX:15653643-15653763 112 2.06e-05 AACAGCCACA GGTGTCGC T chr2R:23652374-23652494 9 2.37e-05 TTCAGAGT GCTGGCGC CATCCAGCTT chr2R:11628156-11628276 23 2.85e-05 AACAAATTTT GAAGGCGC GCCAAGCGGA chrX:940719-940839 52 3.15e-05 AACAAAAACA GGAGGCGC AAAAACAAGC chr3L:10899334-10899454 105 3.45e-05 ATAGCCGCTG GAGGGCGC TCATGTAT chr2L:5771333-5771453 52 4.42e-05 CTTTACGGTA GATGGCGT TATTCAAAGG chr2L:3012872-3012992 86 4.42e-05 GAATTTCTAT GATGGCGT GTCCTAAAAA chr2L:6179110-6179230 75 5.40e-05 agtcgcagtc gctgtcgc agtccgccgt chr2R:7604716-7604836 28 5.89e-05 AATTATTTAA GATGGCCC AGTGATGTAA chrX:13253278-13253398 95 6.96e-05 TTGGCTGCCA GAAGTCGC ACCCCCATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23722093-23722213 4.9e-06 74_[+2]_38 chrX:7710942-7711062 4.9e-06 24_[+2]_88 chr2L:3472386-3472506 4.9e-06 29_[+2]_83 chr3L:12526937-12527057 4.9e-06 80_[+2]_32 chr3R:16748699-16748819 4.9e-06 32_[+2]_80 chr2R:20906674-20906794 4.9e-06 79_[+2]_33 chr3L:3288549-3288669 4.9e-06 90_[+2]_22 chr2R:12274348-12274468 4.9e-06 58_[+2]_54 chr2L:9576794-9576914 7.9e-06 81_[+2]_31 chr2L:5278488-5278608 7.9e-06 37_[+2]_75 chrX:18635425-18635545 7.9e-06 69_[+2]_43 chr2L:15643920-15644040 7.9e-06 99_[+2]_13 chr2R:21535538-21535658 7.9e-06 64_[+2]_48 chr3L:8748987-8749107 7.9e-06 37_[+2]_75 chr3R:16919169-16919289 1.6e-05 106_[+2]_6 chr4:406940-407060 1.6e-05 37_[+2]_75 chrX:17175903-17176023 1.6e-05 83_[+2]_29 chr2L:6797595-6797715 2.1e-05 65_[+2]_47 chr3R:5300752-5300872 2.1e-05 58_[+2]_54 chrX:15653643-15653763 2.1e-05 111_[+2]_1 chr2R:23652374-23652494 2.4e-05 8_[+2]_104 chr2R:11628156-11628276 2.8e-05 22_[+2]_90 chrX:940719-940839 3.2e-05 51_[+2]_61 chr3L:10899334-10899454 3.5e-05 104_[+2]_8 chr2L:5771333-5771453 4.4e-05 51_[+2]_61 chr2L:3012872-3012992 4.4e-05 85_[+2]_27 chr2L:6179110-6179230 5.4e-05 74_[+2]_38 chr2R:7604716-7604836 5.9e-05 27_[+2]_85 chrX:13253278-13253398 7e-05 94_[+2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTGGCGC width=8 seqs=29 chr3R:23722093-23722213 ( 75) GATGGCGC 1 chrX:7710942-7711062 ( 25) GATGGCGC 1 chr2L:3472386-3472506 ( 30) GATGGCGC 1 chr3L:12526937-12527057 ( 81) GATGGCGC 1 chr3R:16748699-16748819 ( 33) GATGGCGC 1 chr2R:20906674-20906794 ( 80) GATGGCGC 1 chr3L:3288549-3288669 ( 91) GATGGCGC 1 chr2R:12274348-12274468 ( 59) GATGGCGC 1 chr2L:9576794-9576914 ( 82) GGTGGCGC 1 chr2L:5278488-5278608 ( 38) GGTGGCGC 1 chrX:18635425-18635545 ( 70) GGTGGCGC 1 chr2L:15643920-15644040 ( 100) GGTGGCGC 1 chr2R:21535538-21535658 ( 65) GGTGGCGC 1 chr3L:8748987-8749107 ( 38) GGTGGCGC 1 chr3R:16919169-16919289 ( 107) GATGTCGC 1 chr4:406940-407060 ( 38) GATGTCGC 1 chrX:17175903-17176023 ( 84) GATGTCGC 1 chr2L:6797595-6797715 ( 66) GGTGTCGC 1 chr3R:5300752-5300872 ( 59) GGTGTCGC 1 chrX:15653643-15653763 ( 112) GGTGTCGC 1 chr2R:23652374-23652494 ( 9) GCTGGCGC 1 chr2R:11628156-11628276 ( 23) GAAGGCGC 1 chrX:940719-940839 ( 52) GGAGGCGC 1 chr3L:10899334-10899454 ( 105) GAGGGCGC 1 chr2L:5771333-5771453 ( 52) GATGGCGT 1 chr2L:3012872-3012992 ( 86) GATGGCGT 1 chr2L:6179110-6179230 ( 75) GCTGTCGC 1 chr2R:7604716-7604836 ( 28) GATGGCCC 1 chrX:13253278-13253398 ( 95) GAAGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 9.9e-013 -1150 -1150 238 -1150 94 -149 84 -1150 -156 -1150 -248 148 -1150 -1150 238 -1150 -1150 -1150 191 -16 -1150 237 -1150 -1150 -1150 -249 233 -1150 -1150 227 -1150 -216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 9.9e-013 0.000000 0.000000 1.000000 0.000000 0.586207 0.068966 0.344828 0.000000 0.103448 0.000000 0.034483 0.862069 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.724138 0.275862 0.000000 1.000000 0.000000 0.000000 0.000000 0.034483 0.965517 0.000000 0.000000 0.931034 0.000000 0.068966 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGGCGC MEME-2 regular expression -------------------------------------------------------------------------------- G[AG]TG[GT]CGC -------------------------------------------------------------------------------- Time 14.22 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGTGCAC MEME-3 width = 8 sites = 26 llr = 243 E-value = 7.3e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGTGCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1:::a: pos.-specific C 13:::a:8 probability G 8591a::2 matrix T :2:9:::: bits 2.4 ** 2.1 ** 1.9 * ** 1.7 * * ** * Relative 1.4 * * **** Entropy 1.2 * ****** (13.5 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGTGCAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:6817076-6817196 8 4.86e-06 CCCAAAT GGGTGCAC AGAGAGAAAT chr3L:5988765-5988885 57 4.86e-06 GATACAGATG GGGTGCAC AGAAAAAAAA chr3R:10641358-10641478 3 4.86e-06 GT GGGTGCAC TGAGAGAAAT chrX:19596143-19596263 51 4.86e-06 ctgtacttgc gggtgcac gctttaaagt chr2L:21730772-21730892 44 4.86e-06 ctgttctggc gggtgcac gctttagaat chr3L:12188110-12188230 74 9.71e-06 ggattcaaaa gcgtgcac ccgcaagtgc chr3R:3846555-3846675 9 9.71e-06 attttaaa gcgtgcac ccgccaatac chr2L:21715156-21715276 73 9.71e-06 ggattctaaa gcgtgcac ccgcaagtac chrX:17820346-17820466 13 2.23e-05 TTTCAGAATC GTGTGCAC TGGCGCCACC chr2L:21648916-21649036 63 2.23e-05 ctgttctggt gtgtgcac gctttagaat chr3R:19648764-19648884 79 2.23e-05 GACAACTGAT GTgtgcac gcaagcggac chr3R:5588002-5588122 76 2.23e-05 GAAAAGTGCA GGGTGCAG GGTGCCGAGT chr2R:21040492-21040612 72 2.23e-05 TGCCGTGGGT GGGTGCAG TGCCTCCGAT chrX:940719-940839 68 3.02e-05 GCAAAAACAA GCGTGCAG AGGCAGTGTG chr3L:15977651-15977771 18 3.51e-05 ACAGGTTTAT CGGTGCAC AGCAAAAAAA chr2R:25085526-25085646 86 3.51e-05 GAGTACGACA CGGTGCAC CATCTATTGG chrX:1380514-1380634 16 3.81e-05 TTGCCACCTC GCGGGCAC TGAAACCACT chr2R:22407644-22407764 47 3.81e-05 TCCGGCACCG GCGGGCAC ATCTGCTTCC chr2R:15818613-15818733 92 3.81e-05 CGCCACCTAT GCGGGCAC AGCTATAAGC chr2L:3435251-3435371 96 4.30e-05 TTTTTTCTCA CCGTGCAC CACTAGAAAC chr3R:22054049-22054169 48 4.60e-05 GTAGATCAAA GGGTGCCC ACAGCCAGCC chrX:7710942-7711062 3 5.38e-05 TC GTGTGCAG TATCTTAAGT chr3L:9456016-9456136 42 5.38e-05 tgtgtgtgta gtgtgCAG CGACAGGCGC chr3R:14095518-14095638 7 6.15e-05 TGTCAC GGATGCAC TCAGAAAAAT chrX:19813732-19813852 34 6.15e-05 ctgtactggc ggatgcac gcttcagaat chr3L:1880804-1880924 16 1.03e-04 GTCTACAGGC AGGTGCAC TGAGAGAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6817076-6817196 4.9e-06 7_[+3]_105 chr3L:5988765-5988885 4.9e-06 56_[+3]_56 chr3R:10641358-10641478 4.9e-06 2_[+3]_110 chrX:19596143-19596263 4.9e-06 50_[+3]_62 chr2L:21730772-21730892 4.9e-06 43_[+3]_69 chr3L:12188110-12188230 9.7e-06 73_[+3]_39 chr3R:3846555-3846675 9.7e-06 8_[+3]_104 chr2L:21715156-21715276 9.7e-06 72_[+3]_40 chrX:17820346-17820466 2.2e-05 12_[+3]_100 chr2L:21648916-21649036 2.2e-05 62_[+3]_50 chr3R:19648764-19648884 2.2e-05 78_[+3]_34 chr3R:5588002-5588122 2.2e-05 75_[+3]_37 chr2R:21040492-21040612 2.2e-05 71_[+3]_41 chrX:940719-940839 3e-05 67_[+3]_45 chr3L:15977651-15977771 3.5e-05 17_[+3]_95 chr2R:25085526-25085646 3.5e-05 85_[+3]_27 chrX:1380514-1380634 3.8e-05 15_[+3]_97 chr2R:22407644-22407764 3.8e-05 46_[+3]_66 chr2R:15818613-15818733 3.8e-05 91_[+3]_21 chr2L:3435251-3435371 4.3e-05 95_[+3]_17 chr3R:22054049-22054169 4.6e-05 47_[+3]_65 chrX:7710942-7711062 5.4e-05 2_[+3]_110 chr3L:9456016-9456136 5.4e-05 41_[+3]_71 chr3R:14095518-14095638 6.1e-05 6_[+3]_106 chrX:19813732-19813852 6.1e-05 33_[+3]_79 chr3L:1880804-1880924 0.0001 15_[+3]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGTGCAC width=8 seqs=26 chr3L:6817076-6817196 ( 8) GGGTGCAC 1 chr3L:5988765-5988885 ( 57) GGGTGCAC 1 chr3R:10641358-10641478 ( 3) GGGTGCAC 1 chrX:19596143-19596263 ( 51) GGGTGCAC 1 chr2L:21730772-21730892 ( 44) GGGTGCAC 1 chr3L:12188110-12188230 ( 74) GCGTGCAC 1 chr3R:3846555-3846675 ( 9) GCGTGCAC 1 chr2L:21715156-21715276 ( 73) GCGTGCAC 1 chrX:17820346-17820466 ( 13) GTGTGCAC 1 chr2L:21648916-21649036 ( 63) GTGTGCAC 1 chr3R:19648764-19648884 ( 79) GTGTGCAC 1 chr3R:5588002-5588122 ( 76) GGGTGCAG 1 chr2R:21040492-21040612 ( 72) GGGTGCAG 1 chrX:940719-940839 ( 68) GCGTGCAG 1 chr3L:15977651-15977771 ( 18) CGGTGCAC 1 chr2R:25085526-25085646 ( 86) CGGTGCAC 1 chrX:1380514-1380634 ( 16) GCGGGCAC 1 chr2R:22407644-22407764 ( 47) GCGGGCAC 1 chr2R:15818613-15818733 ( 92) GCGGGCAC 1 chr2L:3435251-3435371 ( 96) CCGTGCAC 1 chr3R:22054049-22054169 ( 48) GGGTGCCC 1 chrX:7710942-7711062 ( 3) GTGTGCAG 1 chr3L:9456016-9456136 ( 42) GTGTGCAG 1 chr3R:14095518-14095638 ( 7) GGATGCAC 1 chrX:19813732-19813852 ( 34) GGATGCAC 1 chr3L:1880804-1880924 ( 16) AGGTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 7.3e-002 -299 -75 213 -1134 -1134 67 138 -68 -199 -1134 226 -1134 -1134 -1134 -74 152 -1134 -1134 238 -1134 -1134 237 -1134 -1134 165 -233 -1134 -1134 -1134 206 0 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 7.3e-002 0.038462 0.115385 0.846154 0.000000 0.000000 0.307692 0.500000 0.192308 0.076923 0.000000 0.923077 0.000000 0.000000 0.000000 0.115385 0.884615 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.961538 0.038462 0.000000 0.000000 0.000000 0.807692 0.192308 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGCAC MEME-3 regular expression -------------------------------------------------------------------------------- G[GC]GTGCAC -------------------------------------------------------------------------------- Time 20.61 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGGGCG MEME-4 width = 8 sites = 5 llr = 61 E-value = 7.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGGGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:a::::: pos.-specific C ::::::a: probability G :a:aaa:a matrix T :::::::: bits 2.4 * ***** 2.1 * ***** 1.9 * ***** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23722093-23722213 35 4.81e-06 TCCCACACAT AGAGGGCG AGTTTCAAGA chr4:406940-407060 94 4.81e-06 CATTTCCCAC AGAGGGCG CCTGTAGTGG chr3R:5300752-5300872 8 4.81e-06 CCCTAAT AGAGGGCG TGGGCATTGT chr3L:9333856-9333976 86 4.81e-06 AACATCCCCA AGAGGGCG ACACTTGGAG chr3L:8748987-8749107 78 4.81e-06 CTCAACATAT AGAGGGCG TATGTGAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23722093-23722213 4.8e-06 34_[+4]_78 chr4:406940-407060 4.8e-06 93_[+4]_19 chr3R:5300752-5300872 4.8e-06 7_[+4]_105 chr3L:9333856-9333976 4.8e-06 85_[+4]_27 chr3L:8748987-8749107 4.8e-06 77_[+4]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGGGCG width=8 seqs=5 chr3R:23722093-23722213 ( 35) AGAGGGCG 1 chr4:406940-407060 ( 94) AGAGGGCG 1 chr3R:5300752-5300872 ( 8) AGAGGGCG 1 chr3L:9333856-9333976 ( 86) AGAGGGCG 1 chr3L:8748987-8749107 ( 78) AGAGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 7.6e+002 171 -897 -897 -897 -897 -897 237 -897 171 -897 -897 -897 -897 -897 237 -897 -897 -897 237 -897 -897 -897 237 -897 -897 237 -897 -897 -897 -897 237 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.6e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGGGCG MEME-4 regular expression -------------------------------------------------------------------------------- AGAGGGCG -------------------------------------------------------------------------------- Time 26.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCGCG MEME-5 width = 8 sites = 3 llr = 39 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa:a:a: probability G a::a:a:a matrix T :::::::: bits 2.4 ******** 2.1 ******** 1.9 ******** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (19.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6179110-6179230 50 1.93e-06 CGACCTTCGT GCCGCGCG TTACAAGagt chr3R:22133824-22133944 4 1.93e-06 ATC GCCGCGCG GTCAGTCGTC chr2R:12705185-12705305 7 1.93e-06 AACTTC GCCGCGCG CGGTTCACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6179110-6179230 1.9e-06 49_[+5]_63 chr3R:22133824-22133944 1.9e-06 3_[+5]_109 chr2R:12705185-12705305 1.9e-06 6_[+5]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCGCG width=8 seqs=3 chr2L:6179110-6179230 ( 50) GCCGCGCG 1 chr3R:22133824-22133944 ( 4) GCCGCGCG 1 chr2R:12705185-12705305 ( 7) GCCGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 1.6e+004 -823 -823 237 -823 -823 237 -823 -823 -823 237 -823 -823 -823 -823 237 -823 -823 237 -823 -823 -823 -823 237 -823 -823 237 -823 -823 -823 -823 237 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCGCG MEME-5 regular expression -------------------------------------------------------------------------------- GCCGCGCG -------------------------------------------------------------------------------- Time 33.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21040492-21040612 1.94e-02 71_[+3(2.23e-05)]_41 chr3L:9455811-9455931 6.55e-03 120 chr3R:5588002-5588122 1.49e-02 75_[+3(2.23e-05)]_37 chrX:940719-940839 2.20e-05 51_[+2(3.15e-05)]_8_[+3(3.02e-05)]_\ 36_[+1(4.22e-05)]_1 chr2L:21715156-21715276 4.36e-02 72_[+3(9.71e-06)]_40 chr2L:21730772-21730892 7.03e-03 43_[+3(4.86e-06)]_69 chr3R:19648764-19648884 1.86e-04 42_[+1(2.56e-05)]_28_[+3(2.23e-05)]_\ 34 chr2R:7585714-7585834 1.90e-02 41_[+1(5.29e-05)]_71 chrX:19813732-19813852 1.14e-01 33_[+3(6.15e-05)]_79 chr2L:1362370-1362490 6.34e-03 36_[+1(7.90e-06)]_17_[+1(7.90e-06)]_\ 51 chr3R:6973519-6973639 1.38e-01 35_[+1(3.04e-05)]_77 chrX:19596143-19596263 4.97e-03 50_[+3(4.86e-06)]_62 chr2L:10986202-10986322 4.34e-02 29_[+1(2.56e-05)]_83 chr2L:21648916-21649036 4.68e-02 62_[+3(2.23e-05)]_50 chr3L:10666635-10666755 1.76e-01 120 chr2R:12274348-12274468 1.24e-06 58_[+2(4.86e-06)]_21_[+1(3.04e-06)]_\ 25 chr3R:3846555-3846675 8.32e-03 8_[+3(9.71e-06)]_104 chr2L:14508839-14508959 2.53e-01 120 chr3R:12643902-12644022 4.71e-02 120 chr3L:3288549-3288669 1.63e-05 37_[+1(7.90e-06)]_45_[+2(4.86e-06)]_\ 22 chr3R:10681732-10681852 1.99e-01 120 chr2R:15771292-15771412 2.30e-02 31_[+1(3.23e-05)]_81 chr3L:10766840-10766960 4.17e-01 120 chr3L:9614069-9614189 3.42e-03 108_[+1(3.72e-05)]_4 chr3R:22054049-22054169 1.62e-02 47_[+3(4.60e-05)]_65 chr2L:18287345-18287465 1.00e+00 120 chr3R:29690585-29690705 9.99e-01 120 chr2R:7604716-7604836 7.82e-02 27_[+2(5.89e-05)]_85 chr3R:14077189-14077309 1.00e+00 120 chr2R:19445987-19446107 1.30e-02 120 chr3L:2393212-2393332 3.46e-01 120 chr2R:15818613-15818733 5.85e-05 80_[+1(3.04e-06)]_3_[+3(3.81e-05)]_\ 21 chr2R:16551923-16552043 1.02e-02 81_[+1(3.04e-06)]_31 chr3R:31134157-31134277 1.78e-03 32_[+1(7.90e-06)]_80 chr3L:13411148-13411268 1.11e-01 120 chr2R:22407644-22407764 2.26e-03 22_[+1(6.06e-05)]_16_[+3(3.81e-05)]_\ 66 chr2L:20701340-20701460 6.66e-02 120 chrX:5973519-5973639 6.80e-01 120 chr3L:14531924-14532044 9.16e-01 120 chr3L:20710647-20710767 1.00e+00 120 chrX:20147294-20147414 5.63e-02 120 chr2L:8746356-8746476 4.71e-01 120 chr3L:8748987-8749107 4.65e-04 37_[+2(7.93e-06)]_32_[+4(4.81e-06)]_\ 35 chr3R:10656072-10656192 6.01e-01 120 chr2L:14701619-14701739 9.88e-01 120 chr2R:17477098-17477218 1.64e-01 120 chrX:15653643-15653763 1.80e-03 54_[+1(7.15e-05)]_49_[+2(2.06e-05)]_\ 1 chr2R:20572566-20572686 7.24e-01 120 chr3R:24817155-24817275 9.96e-01 120 chr3L:11484635-11484755 1.00e+00 120 chr2L:3012872-3012992 1.68e-02 85_[+2(4.42e-05)]_27 chr3R:16857143-16857263 1.66e-02 58_[+1(1.59e-05)]_54 chr2R:12727597-12727717 1.71e-01 120 chr2R:18585118-18585238 1.00e+00 120 chr3L:1216597-1216717 7.63e-01 120 chr2R:20590638-20590758 4.68e-01 120 chr3L:12619177-12619297 2.80e-02 120 chr3L:12188110-12188230 1.77e-02 73_[+3(9.71e-06)]_39 chr2L:7073180-7073300 9.99e-01 120 chr3R:13825493-13825613 4.06e-01 120 chrX:4498407-4498527 9.93e-01 120 chr2L:13876843-13876963 5.21e-02 73_[+1(2.07e-05)]_39 chr3L:8029504-8029624 6.64e-01 120 chr2L:19285642-19285762 9.95e-01 120 chr3L:15494412-15494532 9.20e-01 120 chr2R:23003278-23003398 2.23e-01 120 chr2L:3675910-3676030 6.16e-01 120 chr2R:10265447-10265567 9.93e-01 120 chr2R:12705185-12705305 1.92e-03 6_[+5(1.93e-06)]_106 chr3R:25077424-25077544 2.61e-02 120 chr2L:17784809-17784929 1.01e-04 63_[+2(4.86e-06)]_49 chr2L:6357107-6357227 1.01e-01 120 chr3L:13845385-13845505 1.75e-02 37_[+1(1.59e-05)]_75 chr2R:20906674-20906794 2.88e-05 79_[+2(4.86e-06)]_33 chr3L:20630739-20630859 7.81e-01 120 chr3R:17056927-17057047 4.16e-01 120 chrX:5968216-5968336 2.90e-01 120 chr3L:9456016-9456136 3.01e-04 41_[+3(5.38e-05)]_6_[+1(2.07e-05)]_\ 57 chr3R:22108464-22108584 1.00e+00 120 chr2L:18906748-18906868 9.93e-01 120 chr2R:11738654-11738774 9.99e-01 120 chr3L:641541-641661 6.92e-04 18_[+1(3.04e-06)]_94 chr2L:19252528-19252648 9.85e-01 120 chr3L:9333856-9333976 3.79e-04 14_[+1(3.04e-05)]_63_[+4(4.81e-06)]_\ 27 chrX:8273854-8273974 1.12e-01 120 chrX:19009037-19009157 2.19e-01 120 chr2R:18273489-18273609 9.67e-01 120 chr2L:19193865-19193985 3.70e-01 120 chr3L:10756191-10756311 1.00e+00 120 chr2R:22379282-22379402 9.93e-01 120 chr3R:22664395-22664515 4.76e-01 120 chr3R:21887620-21887740 9.37e-02 120 chrX:16244846-16244966 1.00e-02 49_[+1(7.90e-06)]_63 chr2R:21535538-21535658 1.66e-02 64_[+2(7.93e-06)]_48 chr3R:9494436-9494556 9.98e-01 120 chr2L:15643920-15644040 3.11e-05 26_[+1(3.04e-06)]_65_[+2(7.93e-06)]_\ 13 chr2L:14212799-14212919 5.39e-02 120 chr3R:10641358-10641478 6.33e-02 2_[+3(4.86e-06)]_110 chr3L:1880804-1880924 1.79e-01 120 chr3R:5300752-5300872 2.11e-05 7_[+4(4.81e-06)]_43_[+2(2.06e-05)]_\ 54 chr2R:7879137-7879257 9.86e-01 120 chr3R:22133824-22133944 7.92e-03 3_[+5(1.93e-06)]_109 chr2L:6179110-6179230 6.36e-05 49_[+5(1.93e-06)]_17_[+2(5.40e-05)]_\ 38 chr2R:16219675-16219795 1.87e-01 120 chr2L:1655949-1656069 9.92e-01 120 chr3R:21594283-21594403 3.70e-01 120 chr3L:20471046-20471166 2.45e-02 120 chr3R:8197207-8197327 4.03e-01 120 chr2L:3598640-3598760 4.53e-01 120 chr3L:11285189-11285309 9.89e-01 120 chrX:17175903-17176023 3.79e-02 83_[+2(1.57e-05)]_29 chr2R:22375039-22375159 6.97e-01 120 chrX:17820346-17820466 2.67e-04 12_[+3(2.23e-05)]_2_[+1(3.04e-06)]_\ 90 chr2L:7155031-7155151 9.99e-01 120 chr2L:19141014-19141134 9.99e-01 120 chrX:19453300-19453420 9.95e-01 120 chrX:20506045-20506165 2.88e-01 120 chr2R:16091921-16092041 9.36e-01 120 chr3R:16748699-16748819 8.35e-05 32_[+2(4.86e-06)]_80 chr2L:3852304-3852424 9.99e-01 120 chr2L:18921391-18921511 8.48e-01 120 chr2R:25085526-25085646 1.59e-04 46_[+1(7.90e-06)]_31_[+3(3.51e-05)]_\ 27 chrX:7162649-7162769 4.15e-05 42_[+1(3.04e-05)]_70 chr3R:9888990-9889110 2.28e-01 96_[+3(9.27e-05)]_16 chr3R:16573943-16574063 3.45e-06 92_[+2(7.93e-06)]_4_[+5(6.62e-05)]_\ 8 chr3L:12526937-12527057 6.12e-04 80_[+2(4.86e-06)]_32 chrX:11153996-11154116 7.72e-02 42_[+1(7.90e-06)]_70 chrX:6621662-6621782 9.99e-01 120 chr2L:3435251-3435371 6.54e-02 95_[+3(4.30e-05)]_17 chr3L:11303978-11304098 3.26e-01 120 chrX:18635425-18635545 1.57e-03 29_[+2(4.86e-06)]_32_[+2(7.93e-06)]_\ 43 chrX:14622356-14622476 9.97e-01 120 chrX:20631259-20631379 9.83e-01 120 chr2L:5771333-5771453 7.39e-05 11_[+1(1.59e-05)]_32_[+2(4.42e-05)]_\ 61 chrX:3068390-3068510 3.37e-01 120 chr3R:28857430-28857550 9.52e-01 120 chr2L:16816081-16816201 1.77e-03 54_[+1(3.04e-06)]_58 chr3L:10899334-10899454 1.33e-05 47_[+1(1.59e-05)]_48_[+4(2.67e-05)]_\ 9 chr2L:3472386-3472506 1.50e-08 29_[+2(4.86e-06)]_44_[+1(3.04e-06)]_\ 2_[+5(6.62e-05)]_21 chr2L:7566757-7566877 6.61e-01 120 chr3L:15199364-15199484 1.00e+00 120 chr2L:9775357-9775477 8.82e-01 120 chr4:406940-407060 6.01e-04 37_[+2(1.57e-05)]_48_[+4(4.81e-06)]_\ 19 chr3R:28904292-28904412 1.00e+00 120 chr2R:9165087-9165207 9.00e-01 120 chrX:7710942-7711062 1.10e-06 2_[+3(5.38e-05)]_14_[+2(4.86e-06)]_\ 38_[+2(4.86e-06)]_42 chrX:18517541-18517661 7.49e-05 75_[+1(1.59e-05)]_37 chr3L:10694050-10694170 2.95e-01 120 chr2L:6797595-6797715 1.07e-02 65_[+2(2.06e-05)]_47 chr2L:7258222-7258342 2.70e-02 36_[+1(7.15e-05)]_46_[+1(7.90e-06)]_\ 22 chr3R:23722093-23722213 2.53e-04 34_[+4(4.81e-06)]_32_[+2(4.86e-06)]_\ 38 chr3L:1578618-1578738 7.29e-01 120 chr3R:14357538-14357658 6.21e-01 120 chr2L:14562419-14562539 9.80e-01 120 chr3L:15977651-15977771 3.01e-01 17_[+3(3.51e-05)]_95 chr2L:5278488-5278608 4.86e-04 37_[+2(7.93e-06)]_75 chr3L:10350848-10350968 9.71e-01 120 chr3L:21047174-21047294 7.62e-01 120 chr3L:2879818-2879938 8.20e-01 120 chrX:6110045-6110165 2.39e-04 56_[+2(7.93e-06)]_56 chr2L:19817246-19817366 8.62e-02 11_[+1(7.90e-06)]_101 chr3L:8399200-8399320 4.84e-01 120 chrX:10600666-10600786 8.56e-02 120 chr3R:29522314-29522434 9.98e-01 120 chrX:13253278-13253398 2.05e-02 94_[+2(6.96e-05)]_18 chr3L:295153-295273 7.58e-01 120 chrX:12015061-12015181 8.68e-01 120 chr2L:9576794-9576914 1.40e-02 50_[+2(2.06e-05)]_23_[+2(7.93e-06)]_\ 31 chr3R:9935040-9935160 9.97e-01 120 chr2L:7635267-7635387 9.99e-01 120 chr2L:3444900-3445020 9.51e-01 120 chr3L:16452434-16452554 9.45e-01 120 chr3R:16834772-16834892 2.78e-02 95_[+1(7.90e-06)]_17 chrX:9352830-9352950 1.00e+00 120 chr3R:14095518-14095638 3.92e-01 6_[+3(6.15e-05)]_106 chr3R:17231602-17231722 1.75e-01 120 chrX:12242572-12242692 2.26e-01 120 chr2R:19128016-19128136 4.01e-01 120 chr3L:16544339-16544459 9.67e-01 120 chr2L:7616936-7617056 7.63e-01 120 chrX:3367410-3367530 9.53e-01 120 chr2R:11628156-11628276 9.30e-04 22_[+2(2.85e-05)]_90 chrX:6615579-6615699 1.00e+00 120 chr2R:10196385-10196505 5.98e-01 120 chr3L:5988765-5988885 1.39e-02 56_[+3(4.86e-06)]_56 chr3L:16770008-16770128 3.34e-03 32_[+1(7.92e-05)]_80 chr3R:24206899-24207019 9.79e-01 120 chr3L:8445143-8445263 1.00e+00 120 chrX:5972199-5972319 1.15e-01 120 chr3R:9344955-9345075 9.95e-01 120 chr2L:1575687-1575807 6.67e-01 120 chr3L:6817076-6817196 5.59e-02 7_[+3(4.86e-06)]_105 chr3L:8675920-8676040 1.32e-01 120 chr3L:14999644-14999764 9.50e-01 120 chrX:16967564-16967684 7.26e-07 33_[+1(3.72e-05)]_30_[+1(2.07e-05)]_\ 41 chr3R:10628452-10628572 3.22e-01 120 chr3R:26436669-26436789 9.06e-01 120 chr2L:7632927-7633047 9.82e-01 120 chr2R:18514015-18514135 9.33e-02 120 chr3R:16919169-16919289 2.68e-05 55_[+1(3.04e-06)]_43_[+2(1.57e-05)]_\ 6 chr2R:23574913-23575033 6.51e-01 120 chr3L:10745739-10745859 9.40e-01 120 chrX:6059255-6059375 9.68e-01 120 chr3R:26172220-26172340 1.95e-01 120 chr3R:25004867-25004987 9.72e-01 120 chrX:15319320-15319440 2.31e-01 120 chrX:18921147-18921267 1.66e-02 120 chr3R:20948092-20948212 2.43e-02 37_[+1(7.92e-05)]_44_[+1(3.04e-06)]_\ 23 chrX:9652139-9652259 9.98e-01 120 chr3L:554754-554874 5.69e-01 120 chr2L:19376280-19376400 9.98e-01 120 chr3R:10648909-10649029 6.41e-01 120 chr3L:13197670-13197790 8.96e-01 120 chrX:11548819-11548939 9.46e-01 120 chr3R:10564384-10564504 5.87e-01 120 chrX:12221572-12221692 8.63e-01 120 chr2L:8834959-8835079 7.25e-01 120 chr2L:10468567-10468687 9.82e-01 120 chr3L:5789861-5789981 1.00e+00 120 chr2R:23652374-23652494 1.96e-04 12_[+1(7.90e-06)]_31_[+1(3.04e-06)]_\ 61 chr3L:20194810-20194930 9.53e-01 120 chr2R:14913265-14913385 9.34e-01 120 chr3R:15652764-15652884 1.00e+00 120 chr2L:14245608-14245728 9.98e-01 120 chr3L:13450282-13450402 9.34e-01 120 chr3L:7360442-7360562 4.61e-02 120 chr3R:5588201-5588321 4.99e-01 120 chr3L:18840634-18840754 3.46e-02 120 chrX:1380514-1380634 1.57e-03 15_[+3(3.81e-05)]_97 chr2L:5245744-5245864 4.43e-01 120 chr2L:3566681-3566801 9.77e-01 120 chrX:11629104-11629224 8.96e-01 120 chr2R:20154002-20154122 9.23e-01 120 chr3R:26444306-26444426 1.00e+00 120 chr3L:5554578-5554698 5.53e-01 120 chr3L:12501432-12501552 8.28e-01 120 chr3L:14545551-14545671 8.20e-01 120 chrX:13644167-13644287 8.48e-01 120 chr3R:10696530-10696650 6.43e-01 120 chr3L:7151988-7152108 7.45e-02 120 chr3R:30413878-30413998 5.12e-01 120 chr2L:13073916-13074036 4.84e-01 120 chr2R:24965167-24965287 6.42e-01 120 chrX:4010968-4011088 1.00e+00 120 chr2L:3775967-3776087 1.03e-01 120 chr3R:9605219-9605339 3.51e-01 120 chr3L:772386-772506 2.15e-02 120 chr3R:17584167-17584287 9.95e-01 120 chr3L:1029745-1029865 9.61e-01 120 chrX:7617045-7617165 3.91e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n11.farnam.hpc.yale.internal ********************************************************************************