******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5204.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:10615308-10615428 1.0000 120 chr3R:8596294-8596414 1.0000 120 chr3R:30108196-30108316 1.0000 120 chr3R:15110279-15110399 1.0000 120 chr2R:7730965-7731085 1.0000 120 chr2L:3246225-3246345 1.0000 120 chr3L:20193127-20193247 1.0000 120 chr2R:17844743-17844863 1.0000 120 chr3L:12184156-12184276 1.0000 120 chr3R:30084230-30084350 1.0000 120 chr3R:25573315-25573435 1.0000 120 chr3L:4044694-4044814 1.0000 120 chrX:21042157-21042277 1.0000 120 chr3L:15743311-15743431 1.0000 120 chr3L:19631332-19631452 1.0000 120 chr2R:18530232-18530352 1.0000 120 chr3L:7754156-7754276 1.0000 120 chr3R:25697311-25697431 1.0000 120 chr3R:14052881-14053001 1.0000 120 chr2L:4942428-4942548 1.0000 120 chr3L:18569828-18569948 1.0000 120 chr3R:16617710-16617830 1.0000 120 chr3R:10075528-10075648 1.0000 120 chr3L:19182127-19182247 1.0000 120 chr2R:21593168-21593288 1.0000 120 chr3R:11170436-11170556 1.0000 120 chr2R:10286645-10286765 1.0000 120 chrX:17349745-17349865 1.0000 120 chr3R:30101754-30101874 1.0000 120 chr3R:23069801-23069921 1.0000 120 chr2R:17705502-17705622 1.0000 120 chr3L:10504796-10504916 1.0000 120 chr2R:9632615-9632735 1.0000 120 chr2R:15654517-15654637 1.0000 120 chr3R:7804571-7804691 1.0000 120 chr3R:5772292-5772412 1.0000 120 chr2R:16834747-16834867 1.0000 120 chr2L:19441460-19441580 1.0000 120 chr2R:9742663-9742783 1.0000 120 chr2R:10333107-10333227 1.0000 120 chr2R:19604637-19604757 1.0000 120 chr3L:16885875-16885995 1.0000 120 chr2R:6920664-6920784 1.0000 120 chr3R:19628531-19628651 1.0000 120 chr3L:4059450-4059570 1.0000 120 chrX:9223436-9223556 1.0000 120 chr3L:8607598-8607718 1.0000 120 chr3L:10291137-10291257 1.0000 120 chrX:4325590-4325710 1.0000 120 chr2R:12493524-12493644 1.0000 120 chr3R:30905648-30905768 1.0000 120 chr3R:26124826-26124946 1.0000 120 chr2L:17427273-17427393 1.0000 120 chr2R:7883074-7883194 1.0000 120 chr2L:20779606-20779726 1.0000 120 chrX:11730122-11730242 1.0000 120 chr3L:13954449-13954569 1.0000 120 chr2L:11735821-11735941 1.0000 120 chr3L:8761028-8761148 1.0000 120 chr2L:6872514-6872634 1.0000 120 chr2L:9754993-9755113 1.0000 120 chrX:6194215-6194335 1.0000 120 chrX:5921013-5921133 1.0000 120 chrX:15042727-15042847 1.0000 120 chr3L:19583165-19583285 1.0000 120 chr4:922753-922873 1.0000 120 chr2R:8062106-8062226 1.0000 120 chr3L:8626149-8626269 1.0000 120 chr3L:21193462-21193582 1.0000 120 chr2L:16522830-16522950 1.0000 120 chr3L:16634716-16634836 1.0000 120 chr2L:11628477-11628597 1.0000 120 chr2L:4930701-4930821 1.0000 120 chr3L:17902812-17902932 1.0000 120 chr2R:16620771-16620891 1.0000 120 chr3R:26275142-26275262 1.0000 120 chr2R:13673869-13673989 1.0000 120 chr3L:10110547-10110667 1.0000 120 chr3R:27608816-27608936 1.0000 120 chr2L:6774839-6774959 1.0000 120 chr2L:11841536-11841656 1.0000 120 chrX:10841809-10841929 1.0000 120 chr2L:22108832-22108952 1.0000 120 chr3R:23867935-23868055 1.0000 120 chr2R:9554735-9554855 1.0000 120 chr3R:17774736-17774856 1.0000 120 chr2L:11731672-11731792 1.0000 120 chr2R:20254712-20254832 1.0000 120 chr3R:27662119-27662239 1.0000 120 chr3R:8354143-8354263 1.0000 120 chr3R:14070847-14070967 1.0000 120 chr3R:11126587-11126707 1.0000 120 chr3R:21949829-21949949 1.0000 120 chrX:11142139-11142259 1.0000 120 chr3R:31038157-31038277 1.0000 120 chr3R:23667525-23667645 1.0000 120 chrX:6333448-6333568 1.0000 120 chr2R:10275788-10275908 1.0000 120 chr3R:31250539-31250659 1.0000 120 chr3R:17019035-17019155 1.0000 120 chrX:21010585-21010705 1.0000 120 chr3L:12078676-12078796 1.0000 120 chr2R:10871729-10871849 1.0000 120 chr2R:11439086-11439206 1.0000 120 chr3R:24521115-24521235 1.0000 120 chr2R:5109394-5109514 1.0000 120 chr2L:6307005-6307125 1.0000 120 chr3L:11276351-11276471 1.0000 120 chr2L:13099311-13099431 1.0000 120 chr3R:9075022-9075142 1.0000 120 chr3R:26325083-26325203 1.0000 120 chr3L:1449492-1449612 1.0000 120 chrX:10736147-10736267 1.0000 120 chr3R:10759506-10759626 1.0000 120 chr2R:24287252-24287372 1.0000 120 chr3R:15410346-15410466 1.0000 120 chr3R:18578281-18578401 1.0000 120 chr3L:9339133-9339253 1.0000 120 chr2R:12534677-12534797 1.0000 120 chr3L:4663904-4664024 1.0000 120 chrX:10345854-10345974 1.0000 120 chr2L:14095078-14095198 1.0000 120 chr2L:4335537-4335657 1.0000 120 chrX:19664280-19664400 1.0000 120 chrX:15128339-15128459 1.0000 120 chr2R:16617545-16617665 1.0000 120 chr2L:9735483-9735603 1.0000 120 chr3R:21852068-21852188 1.0000 120 chr3R:7945104-7945224 1.0000 120 chr3R:20605733-20605853 1.0000 120 chrX:8110448-8110568 1.0000 120 chr2L:9550999-9551119 1.0000 120 chr2L:2612523-2612643 1.0000 120 chrX:5428902-5429022 1.0000 120 chr2R:14973053-14973173 1.0000 120 chr3R:19890435-19890555 1.0000 120 chr2L:21071658-21071778 1.0000 120 chr2L:9737865-9737985 1.0000 120 chr2R:18331466-18331586 1.0000 120 chr2L:870147-870267 1.0000 120 chr3R:15518811-15518931 1.0000 120 chr3L:22053211-22053331 1.0000 120 chr3R:14218019-14218139 1.0000 120 chr3R:21757973-21758093 1.0000 120 chr2L:23372851-23372971 1.0000 120 chr3R:21298888-21299008 1.0000 120 chr3L:9092769-9092889 1.0000 120 chr3R:14285700-14285820 1.0000 120 chr3R:30083395-30083515 1.0000 120 chr2L:5302391-5302511 1.0000 120 chr3L:25121163-25121283 1.0000 120 chr3R:13828104-13828224 1.0000 120 chr3L:19696689-19696809 1.0000 120 chr3R:28025416-28025536 1.0000 120 chrX:9399903-9400023 1.0000 120 chr3L:20884137-20884257 1.0000 120 chr3R:22780210-22780330 1.0000 120 chr3L:20537856-20537976 1.0000 120 chr2L:16672428-16672548 1.0000 120 chr3R:27655066-27655186 1.0000 120 chr3L:5821563-5821683 1.0000 120 chr3L:8453962-8454082 1.0000 120 chr2L:4417045-4417165 1.0000 120 chr3L:1612304-1612424 1.0000 120 chr3L:16746219-16746339 1.0000 120 chr3R:10081580-10081700 1.0000 120 chr2R:8086964-8087084 1.0000 120 chr3L:17401038-17401158 1.0000 120 chr2L:18878279-18878399 1.0000 120 chr2R:10553789-10553909 1.0000 120 chr2R:6648302-6648422 1.0000 120 chrX:13935684-13935804 1.0000 120 chr3L:8878579-8878699 1.0000 120 chr2L:3646139-3646259 1.0000 120 chr3R:23902247-23902367 1.0000 120 chrX:19069458-19069578 1.0000 120 chr2R:7730144-7730264 1.0000 120 chrX:1508191-1508311 1.0000 120 chrX:19292714-19292834 1.0000 120 chr3L:4414671-4414791 1.0000 120 chr2R:21409726-21409846 1.0000 120 chr3R:13782999-13783119 1.0000 120 chr3L:14381705-14381825 1.0000 120 chr2L:8099378-8099498 1.0000 120 chr2L:1118185-1118305 1.0000 120 chr3R:5804745-5804865 1.0000 120 chr2R:5340588-5340708 1.0000 120 chrX:11378529-11378649 1.0000 120 chr2R:1513651-1513771 1.0000 120 chr3R:10228152-10228272 1.0000 120 chr3L:7719543-7719663 1.0000 120 chr2L:21369974-21370094 1.0000 120 chrX:14909137-14909257 1.0000 120 chr3R:24116317-24116437 1.0000 120 chr3R:5011182-5011302 1.0000 120 chr3L:6296719-6296839 1.0000 120 chr2R:9685741-9685861 1.0000 120 chr2L:5210198-5210318 1.0000 120 chrX:18369654-18369774 1.0000 120 chr3R:24149084-24149204 1.0000 120 chr3R:28025617-28025737 1.0000 120 chrX:17694037-17694157 1.0000 120 chrX:17021526-17021646 1.0000 120 chr3R:4694913-4695033 1.0000 120 chrX:10756253-10756373 1.0000 120 chrX:2685161-2685281 1.0000 120 chr3R:13818979-13819099 1.0000 120 chr3R:21195659-21195779 1.0000 120 chrX:11341240-11341360 1.0000 120 chr3R:5839081-5839201 1.0000 120 chr3L:13918830-13918950 1.0000 120 chr3R:26671788-26671908 1.0000 120 chr2L:19416005-19416125 1.0000 120 chr3R:30915159-30915279 1.0000 120 chr3R:26248192-26248312 1.0000 120 chr2L:5303051-5303171 1.0000 120 chr2L:4896903-4897023 1.0000 120 chr2L:5434486-5434606 1.0000 120 chr2L:5209990-5210110 1.0000 120 chr2L:13399815-13399935 1.0000 120 chrX:15530545-15530665 1.0000 120 chr3L:11599447-11599567 1.0000 120 chr3R:17214932-17215052 1.0000 120 chr3L:11292597-11292717 1.0000 120 chr3R:31712732-31712852 1.0000 120 chrX:9061416-9061536 1.0000 120 chr2L:3308114-3308234 1.0000 120 chr3R:10380124-10380244 1.0000 120 chr3R:18546277-18546397 1.0000 120 chr2R:10252660-10252780 1.0000 120 chr2R:21702519-21702639 1.0000 120 chr3L:8580854-8580974 1.0000 120 chr2R:9078651-9078771 1.0000 120 chr2R:6769957-6770077 1.0000 120 chr3L:1741327-1741447 1.0000 120 chr2L:3584202-3584322 1.0000 120 chr3R:10679293-10679413 1.0000 120 chrX:20433491-20433611 1.0000 120 chr2R:11068874-11068994 1.0000 120 chr2R:9745210-9745330 1.0000 120 chr3L:20000398-20000518 1.0000 120 chr3L:16166970-16167090 1.0000 120 chr3L:9466768-9466888 1.0000 120 chr3L:2800482-2800602 1.0000 120 chr2R:16818807-16818927 1.0000 120 chr3R:16356656-16356776 1.0000 120 chr3L:6084546-6084666 1.0000 120 chr3R:14071049-14071169 1.0000 120 chrX:12672383-12672503 1.0000 120 chrX:16581861-16581981 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG5204/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5204.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.328 C 0.174 G 0.177 T 0.321 Background letter frequencies (from file dataset with add-one prior applied): A 0.328 C 0.174 G 0.177 T 0.321 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCMGCYGC MEME-1 width = 8 sites = 27 llr = 249 E-value = 3.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMGCYGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::41:11: pos.-specific C :a4:a529 probability G a::8::71 matrix T ::11:4:: bits 2.5 ** 2.3 ** * 2.0 ** * * 1.8 ** * * Relative 1.5 ** * ** Entropy 1.3 ** ** ** (13.3 bits) 1.0 ** ** ** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel GCAGCCGC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCYGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6307005-6307125 9 8.84e-07 TTTGGTAA GCCGCCGC ACAGTGGAGC chr3R:14071049-14071169 80 2.55e-06 CGACACGGAA GCAGCCGC GCCCTCGATT chr2L:18878279-18878399 108 2.55e-06 CAATTTTATG GCAGCCGC CAACA chr3L:4044694-4044814 16 2.55e-06 TATTAGATAA GCAGCCGC CAATTAAATA chr3L:8626149-8626269 15 4.18e-06 GTACTctgct gccgctgc tgttgctgcA chr2R:10553789-10553909 87 7.26e-06 GTTAGTAGTT GCAGCTGC AAGGTGCTAT chr3L:19583165-19583285 8 7.26e-06 ATGGACT GCAGCTGC ACTGGGCAAA chr2L:22108832-22108952 18 8.13e-06 GGTTCTCTTT GCCGCCCC CCTTGAGCAC chr3R:19890435-19890555 76 1.30e-05 GTCCAGTATT GCCGCTCC CTTCGAAATG chr3R:5011182-5011302 89 1.76e-05 CCTGGTGAAT GCCTCCGC TGGCTGTAAT chr3L:1612304-1612424 45 1.76e-05 CGCCGGTGTT GCTGCTGC AACTACAACT chr3L:21193462-21193582 50 1.76e-05 ACACACAGAA GCTGCTGC ACTGGGAACT chr3L:8761028-8761148 62 1.76e-05 TTCGGCAACC GCCTCCGC ATCGGACAGT chr3L:4414671-4414791 38 2.71e-05 GTCTGCAGTG GCATCCGC atccatatcc chr3L:16166970-16167090 6 4.15e-05 TTTTG GCGGCTGC TTTGTGCCAC chr3L:1449492-1449612 92 4.15e-05 AACCATCGGA GCAGCAGC GATATAAAGT chr3L:7754156-7754276 78 4.15e-05 TATTTAAGAT GCAGCAGC TTGCCGTATT chr3L:6296719-6296839 80 4.31e-05 AACGACGTCA GCCGCTGG GCATTCAAAT chr2R:6648302-6648422 1 4.31e-05 . GCCGCTGG TCCAATAGTT chr3R:5839081-5839201 15 4.40e-05 GCGTTCGATT GCCGGCGC TTCTATGCAA chr2R:18331466-18331586 8 5.58e-05 ATTGGAA GCAGCCAC TCAAGACTTA chr3R:26275142-26275262 35 5.58e-05 GAGCAGCTGG GCAACCGC AGTTGCTGCA chr2R:19604637-19604757 43 5.58e-05 AATTAAAACA GCAGCCAC AACAACCACA chr3R:28025617-28025737 3 6.03e-05 GT GCTGCTCC TCGGTGGTGG chr3L:17401038-17401158 74 6.03e-05 TGTTTATTTA GCTGCTCC TGTGCTCCTG chr3R:28025416-28025536 52 6.03e-05 GTTCGATGGC GCCTCCCC TTTGGATACA chr3L:12078676-12078796 111 9.83e-05 TCTATATGGA GCAACTGC CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCYGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6307005-6307125 8.8e-07 8_[+1]_104 chr3R:14071049-14071169 2.6e-06 79_[+1]_33 chr2L:18878279-18878399 2.6e-06 107_[+1]_5 chr3L:4044694-4044814 2.6e-06 15_[+1]_97 chr3L:8626149-8626269 4.2e-06 14_[+1]_98 chr2R:10553789-10553909 7.3e-06 86_[+1]_26 chr3L:19583165-19583285 7.3e-06 7_[+1]_105 chr2L:22108832-22108952 8.1e-06 17_[+1]_95 chr3R:19890435-19890555 1.3e-05 75_[+1]_37 chr3R:5011182-5011302 1.8e-05 88_[+1]_24 chr3L:1612304-1612424 1.8e-05 44_[+1]_68 chr3L:21193462-21193582 1.8e-05 49_[+1]_63 chr3L:8761028-8761148 1.8e-05 61_[+1]_51 chr3L:4414671-4414791 2.7e-05 37_[+1]_75 chr3L:16166970-16167090 4.1e-05 5_[+1]_107 chr3L:1449492-1449612 4.1e-05 91_[+1]_21 chr3L:7754156-7754276 4.1e-05 77_[+1]_35 chr3L:6296719-6296839 4.3e-05 79_[+1]_33 chr2R:6648302-6648422 4.3e-05 [+1]_112 chr3R:5839081-5839201 4.4e-05 14_[+1]_98 chr2R:18331466-18331586 5.6e-05 7_[+1]_105 chr3R:26275142-26275262 5.6e-05 34_[+1]_78 chr2R:19604637-19604757 5.6e-05 42_[+1]_70 chr3R:28025617-28025737 6e-05 2_[+1]_110 chr3L:17401038-17401158 6e-05 73_[+1]_39 chr3R:28025416-28025536 6e-05 51_[+1]_61 chr3L:12078676-12078796 9.8e-05 110_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCYGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMGCYGC width=8 seqs=27 chr2L:6307005-6307125 ( 9) GCCGCCGC 1 chr3R:14071049-14071169 ( 80) GCAGCCGC 1 chr2L:18878279-18878399 ( 108) GCAGCCGC 1 chr3L:4044694-4044814 ( 16) GCAGCCGC 1 chr3L:8626149-8626269 ( 15) GCCGCTGC 1 chr2R:10553789-10553909 ( 87) GCAGCTGC 1 chr3L:19583165-19583285 ( 8) GCAGCTGC 1 chr2L:22108832-22108952 ( 18) GCCGCCCC 1 chr3R:19890435-19890555 ( 76) GCCGCTCC 1 chr3R:5011182-5011302 ( 89) GCCTCCGC 1 chr3L:1612304-1612424 ( 45) GCTGCTGC 1 chr3L:21193462-21193582 ( 50) GCTGCTGC 1 chr3L:8761028-8761148 ( 62) GCCTCCGC 1 chr3L:4414671-4414791 ( 38) GCATCCGC 1 chr3L:16166970-16167090 ( 6) GCGGCTGC 1 chr3L:1449492-1449612 ( 92) GCAGCAGC 1 chr3L:7754156-7754276 ( 78) GCAGCAGC 1 chr3L:6296719-6296839 ( 80) GCCGCTGG 1 chr2R:6648302-6648422 ( 1) GCCGCTGG 1 chr3R:5839081-5839201 ( 15) GCCGGCGC 1 chr2R:18331466-18331586 ( 8) GCAGCCAC 1 chr3R:26275142-26275262 ( 35) GCAACCGC 1 chr2R:19604637-19604757 ( 43) GCAGCCAC 1 chr3R:28025617-28025737 ( 3) GCTGCTCC 1 chr3L:17401038-17401158 ( 74) GCTGCTCC 1 chr3R:28025416-28025536 ( 52) GCCTCCCC 1 chr3L:12078676-12078796 ( 111) GCAACTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCYGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 3.8e-002 -1140 -1140 250 -1140 -1140 252 -1140 -1140 44 109 -225 -111 -215 -1140 214 -111 -1140 247 -225 -1140 -215 147 -1140 47 -215 9 207 -1140 -1140 241 -125 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCYGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 3.8e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.370370 0.037037 0.148148 0.074074 0.000000 0.777778 0.148148 0.000000 0.962963 0.037037 0.000000 0.074074 0.481481 0.000000 0.444444 0.074074 0.185185 0.740741 0.000000 0.000000 0.925926 0.074074 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMGCYGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[AC]GC[CT]GC -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTTGCG MEME-2 width = 8 sites = 5 llr = 61 E-value = 3.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTTGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::::a2 probability G a:a::a:8 matrix T :::aa::: bits 2.5 *** ** 2.3 *** ** 2.0 *** ** 1.8 ******** Relative 1.5 ******** Entropy 1.3 ******** (17.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGTTGCG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13399815-13399935 93 3.06e-06 TCTAGAATGT GCGTTGCG CTTCACTGGC chr2R:11439086-11439206 32 3.06e-06 GTTCGTGACC GCGTTGCG CCAAATAAGA chr2R:19604637-19604757 19 3.06e-06 TTTAACGTTT GCGTTGCG AAATTTAATT chr2R:9742663-9742783 37 3.06e-06 GGACGAATTC GCGTTGCG GGACGAGTAA chr2L:5434486-5434606 72 6.07e-06 AACTGTTGAA GCGTTGCC ATCAACGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13399815-13399935 3.1e-06 92_[+2]_20 chr2R:11439086-11439206 3.1e-06 31_[+2]_81 chr2R:19604637-19604757 3.1e-06 18_[+2]_94 chr2R:9742663-9742783 3.1e-06 36_[+2]_76 chr2L:5434486-5434606 6.1e-06 71_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTTGCG width=8 seqs=5 chr2L:13399815-13399935 ( 93) GCGTTGCG 1 chr2R:11439086-11439206 ( 32) GCGTTGCG 1 chr2R:19604637-19604757 ( 19) GCGTTGCG 1 chr2R:9742663-9742783 ( 37) GCGTTGCG 1 chr2L:5434486-5434606 ( 72) GCGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 3.4e+003 -897 -897 250 -897 -897 252 -897 -897 -897 -897 250 -897 -897 -897 -897 164 -897 -897 -897 164 -897 -897 250 -897 -897 252 -897 -897 -897 20 218 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTTGCG MEME-2 regular expression -------------------------------------------------------------------------------- GCGTTGC[GC] -------------------------------------------------------------------------------- Time 13.77 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTGGCCG MEME-3 width = 8 sites = 6 llr = 69 E-value = 9.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTGGCCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 882::aa2 probability G :::aa::8 matrix T 228::::: bits 2.5 **** 2.3 **** 2.0 **** 1.8 ** ***** Relative 1.5 ** ***** Entropy 1.3 ******** (16.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCTGGCCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGCCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16166970-16167090 23 1.63e-06 CTTTGTGCCA CCTGGCCG ttcgattcat chr2R:21702519-21702639 66 1.63e-06 AAGATTAATG CCTGGCCG ACTAATTTGA chr2L:17427273-17427393 81 2.52e-06 GTCTAGTGAA CCCGGCCG TATTCCCGTT chr2R:9745210-9745330 71 4.12e-06 ACTGTTTTGG CCTGGCCC CACATTATTT chr3L:1612304-1612424 61 1.01e-05 GCAACTACAA CTTGGCCG CTCTTGGCAC chr3L:12078676-12078796 65 1.01e-05 CACTTGCCTA TCTGGCCG CCTACTTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGCCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16166970-16167090 1.6e-06 22_[+3]_90 chr2R:21702519-21702639 1.6e-06 65_[+3]_47 chr2L:17427273-17427393 2.5e-06 80_[+3]_32 chr2R:9745210-9745330 4.1e-06 70_[+3]_42 chr3L:1612304-1612424 1e-05 60_[+3]_52 chr3L:12078676-12078796 1e-05 64_[+3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGCCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTGGCCG width=8 seqs=6 chr3L:16166970-16167090 ( 23) CCTGGCCG 1 chr2R:21702519-21702639 ( 66) CCTGGCCG 1 chr2L:17427273-17427393 ( 81) CCCGGCCG 1 chr2R:9745210-9745330 ( 71) CCTGGCCC 1 chr3L:1612304-1612424 ( 61) CTTGGCCG 1 chr3L:12078676-12078796 ( 65) TCTGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGCCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 9.9e+003 -923 226 -923 -94 -923 226 -923 -94 -923 -6 -923 138 -923 -923 250 -923 -923 -923 250 -923 -923 252 -923 -923 -923 252 -923 -923 -923 -6 224 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGCCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.9e+003 0.000000 0.833333 0.000000 0.166667 0.000000 0.833333 0.000000 0.166667 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTGGCCG MEME-3 regular expression -------------------------------------------------------------------------------- CCTGGCCG -------------------------------------------------------------------------------- Time 20.07 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTKGGC MEME-4 width = 8 sites = 14 llr = 139 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTKGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :7:::::: pos.-specific C a:7:::1a probability G :13:4a9: matrix T :1:a6::: bits 2.5 * * * 2.3 * * * 2.0 * *** 1.8 * ** *** Relative 1.5 * ** *** Entropy 1.3 * ** *** (14.3 bits) 1.0 * ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CACTTGGC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTKGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4896903-4897023 15 8.65e-06 AAATAATTGA CACTTGGC GACGAGCCCC chr3R:13818979-13819099 24 8.65e-06 GTCACCCACT CACTTGGC CACTTTCACG chrX:2685161-2685281 55 8.65e-06 CTTGGATTGA CACTTGGC ATCGGCAGTG chr3L:1612304-1612424 76 8.65e-06 CCGCTCTTGG CACTGGGC AACTTGGCTG chrX:11142139-11142259 102 8.65e-06 CGAACCGTGT CACTTGGC TGTCGGGGAT chr3R:30915159-30915279 53 1.75e-05 GTGCTACTGT CAGTGGGC TGTTTTTATT chrX:13935684-13935804 12 1.75e-05 ATGAAAAGTA CAGTGGGC ACTCGCGAAA chr3R:10081580-10081700 103 1.75e-05 TGGGCGCTAA CAGTTGGC GGTAACTGTG chr2L:18878279-18878399 36 2.21e-05 AAATAAAAAT CGCTTGGC TTTTATGGCC chr2R:21702519-21702639 101 3.06e-05 TGTAAATGCG CTCTTGGC CAGCAAAGTG chrX:15128339-15128459 102 3.06e-05 TAATTTTATG CTCTTGGC ATCCATTTAG chr3L:12078676-12078796 55 3.91e-05 TAATAAAGCC CACTTGCC TATCTGGCCG chr2R:7883074-7883194 3 3.91e-05 TA CACTGGCC AGCAGGATTT chr3R:26124826-26124946 37 4.39e-05 CAATAGCTTG CGGTGGGC GCACGCGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTKGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4896903-4897023 8.7e-06 14_[+4]_98 chr3R:13818979-13819099 8.7e-06 23_[+4]_89 chrX:2685161-2685281 8.7e-06 54_[+4]_58 chr3L:1612304-1612424 8.7e-06 75_[+4]_37 chrX:11142139-11142259 8.7e-06 101_[+4]_11 chr3R:30915159-30915279 1.7e-05 52_[+4]_60 chrX:13935684-13935804 1.7e-05 11_[+4]_101 chr3R:10081580-10081700 1.7e-05 102_[+4]_10 chr2L:18878279-18878399 2.2e-05 35_[+4]_77 chr2R:21702519-21702639 3.1e-05 100_[+4]_12 chrX:15128339-15128459 3.1e-05 101_[+4]_11 chr3L:12078676-12078796 3.9e-05 54_[+4]_58 chr2R:7883074-7883194 3.9e-05 2_[+4]_110 chr3R:26124826-26124946 4.4e-05 36_[+4]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTKGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTKGGC width=8 seqs=14 chr2L:4896903-4897023 ( 15) CACTTGGC 1 chr3R:13818979-13819099 ( 24) CACTTGGC 1 chrX:2685161-2685281 ( 55) CACTTGGC 1 chr3L:1612304-1612424 ( 76) CACTGGGC 1 chrX:11142139-11142259 ( 102) CACTTGGC 1 chr3R:30915159-30915279 ( 53) CAGTGGGC 1 chrX:13935684-13935804 ( 12) CAGTGGGC 1 chr3R:10081580-10081700 ( 103) CAGTTGGC 1 chr2L:18878279-18878399 ( 36) CGCTTGGC 1 chr2R:21702519-21702639 ( 101) CTCTTGGC 1 chrX:15128339-15128459 ( 102) CTCTTGGC 1 chr3L:12078676-12078796 ( 55) CACTTGCC 1 chr2R:7883074-7883194 ( 3) CACTGGCC 1 chr3R:26124826-26124946 ( 37) CGGTGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTKGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8217 E= 1.7e+004 -1045 252 -1045 -1045 112 -1045 -31 -117 -1045 203 69 -1045 -1045 -1045 -1045 164 -1045 -1045 101 100 -1045 -1045 250 -1045 -1045 -29 228 -1045 -1045 252 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTKGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.7e+004 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.142857 0.142857 0.000000 0.714286 0.285714 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.357143 0.642857 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTKGGC MEME-4 regular expression -------------------------------------------------------------------------------- CA[CG]T[TG]GGC -------------------------------------------------------------------------------- Time 26.31 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGAGCG MEME-5 width = 8 sites = 2 llr = 27 E-value = 3.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGAGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C a:a:::a: probability G :a:a:a:a matrix T :::::::: bits 2.5 **** *** 2.3 **** *** 2.0 **** *** 1.8 **** *** Relative 1.5 ******** Entropy 1.3 ******** (19.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCGAGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9745210-9745330 38 1.70e-06 ATTGTGTCAT CGCGAGCG AGCGTTTTGC chr3L:21193462-21193582 103 1.70e-06 TGCCCACATG CGCGAGCG AGCTTTTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9745210-9745330 1.7e-06 37_[+5]_75 chr3L:21193462-21193582 1.7e-06 102_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGAGCG width=8 seqs=2 chr2R:9745210-9745330 ( 38) CGCGAGCG 1 chr3L:21193462-21193582 ( 103) CGCGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.8e+004 -765 251 -765 -765 -765 -765 249 -765 -765 251 -765 -765 -765 -765 249 -765 160 -765 -765 -765 -765 -765 249 -765 -765 251 -765 -765 -765 -765 249 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGAGCG MEME-5 regular expression -------------------------------------------------------------------------------- CGCGAGCG -------------------------------------------------------------------------------- Time 32.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10615308-10615428 9.08e-01 120 chr3R:8596294-8596414 9.99e-01 120 chr3R:30108196-30108316 9.87e-01 120 chr3R:15110279-15110399 9.18e-01 120 chr2R:7730965-7731085 9.42e-01 120 chr2L:3246225-3246345 3.91e-01 120 chr3L:20193127-20193247 9.51e-01 120 chr2R:17844743-17844863 1.21e-01 120 chr3L:12184156-12184276 1.00e+00 120 chr3R:30084230-30084350 9.23e-01 120 chr3R:25573315-25573435 9.36e-01 120 chr3L:4044694-4044814 7.38e-04 15_[+1(2.55e-06)]_97 chrX:21042157-21042277 2.95e-01 120 chr3L:15743311-15743431 1.66e-01 120 chr3L:19631332-19631452 4.18e-01 120 chr2R:18530232-18530352 7.16e-01 120 chr3L:7754156-7754276 1.63e-02 77_[+1(4.15e-05)]_35 chr3R:25697311-25697431 4.27e-01 120 chr3R:14052881-14053001 9.90e-01 120 chr2L:4942428-4942548 9.48e-01 120 chr3L:18569828-18569948 1.88e-02 120 chr3R:16617710-16617830 8.87e-02 120 chr3R:10075528-10075648 8.38e-01 120 chr3L:19182127-19182247 6.30e-01 120 chr2R:21593168-21593288 9.78e-01 120 chr3R:11170436-11170556 1.00e+00 120 chr2R:10286645-10286765 2.17e-01 120 chrX:17349745-17349865 4.17e-01 120 chr3R:30101754-30101874 8.85e-01 120 chr3R:23069801-23069921 1.00e+00 120 chr2R:17705502-17705622 1.16e-01 120 chr3L:10504796-10504916 9.99e-01 120 chr2R:9632615-9632735 5.53e-01 120 chr2R:15654517-15654637 1.00e+00 120 chr3R:7804571-7804691 9.97e-01 120 chr3R:5772292-5772412 1.28e-01 120 chr2R:16834747-16834867 8.76e-01 120 chr2L:19441460-19441580 5.35e-02 120 chr2R:9742663-9742783 4.73e-04 36_[+2(3.06e-06)]_76 chr2R:10333107-10333227 1.29e-01 120 chr2R:19604637-19604757 7.86e-05 18_[+2(3.06e-06)]_16_[+1(5.58e-05)]_\ 70 chr3L:16885875-16885995 9.99e-01 120 chr2R:6920664-6920784 9.98e-01 120 chr3R:19628531-19628651 5.72e-02 120 chr3L:4059450-4059570 6.63e-02 120 chrX:9223436-9223556 5.75e-01 120 chr3L:8607598-8607718 1.00e+00 120 chr3L:10291137-10291257 4.68e-01 120 chrX:4325590-4325710 6.84e-01 120 chr2R:12493524-12493644 1.00e+00 120 chr3R:30905648-30905768 1.41e-01 120 chr3R:26124826-26124946 9.13e-04 36_[+4(4.39e-05)]_76 chr2L:17427273-17427393 1.28e-02 80_[+3(2.52e-06)]_32 chr2R:7883074-7883194 2.88e-02 2_[+4(3.91e-05)]_110 chr2L:20779606-20779726 1.62e-01 120 chrX:11730122-11730242 4.94e-01 120 chr3L:13954449-13954569 8.58e-01 120 chr2L:11735821-11735941 1.13e-02 120 chr3L:8761028-8761148 6.27e-03 61_[+1(1.76e-05)]_51 chr2L:6872514-6872634 1.37e-01 120 chr2L:9754993-9755113 6.61e-01 120 chrX:6194215-6194335 3.24e-01 120 chrX:5921013-5921133 1.43e-02 120 chrX:15042727-15042847 9.98e-01 120 chr3L:19583165-19583285 8.92e-04 7_[+1(7.26e-06)]_105 chr4:922753-922873 9.95e-01 120 chr2R:8062106-8062226 9.79e-01 120 chr3L:8626149-8626269 5.22e-05 14_[+1(4.18e-06)]_98 chr3L:21193462-21193582 5.24e-06 49_[+1(1.76e-05)]_45_[+5(1.70e-06)]_\ 10 chr2L:16522830-16522950 2.16e-01 120 chr3L:16634716-16634836 9.86e-01 120 chr2L:11628477-11628597 8.11e-01 120 chr2L:4930701-4930821 8.32e-01 120 chr3L:17902812-17902932 5.99e-01 120 chr2R:16620771-16620891 7.95e-01 120 chr3R:26275142-26275262 4.02e-02 26_[+1(7.04e-05)]_[+1(5.58e-05)]_78 chr2R:13673869-13673989 9.94e-01 120 chr3L:10110547-10110667 9.99e-01 120 chr3R:27608816-27608936 3.63e-01 120 chr2L:6774839-6774959 2.97e-02 120 chr2L:11841536-11841656 9.99e-01 120 chrX:10841809-10841929 5.35e-01 120 chr2L:22108832-22108952 1.93e-06 17_[+1(8.13e-06)]_78_[+2(6.07e-06)]_\ 9 chr3R:23867935-23868055 4.51e-01 120 chr2R:9554735-9554855 3.23e-01 120 chr3R:17774736-17774856 1.00e+00 120 chr2L:11731672-11731792 6.87e-01 120 chr2R:20254712-20254832 5.29e-02 120 chr3R:27662119-27662239 4.54e-01 120 chr3R:8354143-8354263 2.47e-02 120 chr3R:14070847-14070967 9.85e-02 120 chr3R:11126587-11126707 3.49e-01 120 chr3R:21949829-21949949 9.04e-02 120 chrX:11142139-11142259 4.91e-05 101_[+4(8.65e-06)]_11 chr3R:31038157-31038277 1.57e-02 120 chr3R:23667525-23667645 9.26e-01 120 chrX:6333448-6333568 9.29e-01 120 chr2R:10275788-10275908 7.77e-02 120 chr3R:31250539-31250659 9.97e-01 120 chr3R:17019035-17019155 2.48e-01 120 chrX:21010585-21010705 6.77e-01 120 chr3L:12078676-12078796 1.96e-04 54_[+4(3.91e-05)]_2_[+3(1.01e-05)]_\ 38_[+1(9.83e-05)]_2 chr2R:10871729-10871849 9.75e-01 120 chr2R:11439086-11439206 3.51e-04 31_[+2(3.06e-06)]_81 chr3R:24521115-24521235 8.08e-01 120 chr2R:5109394-5109514 3.17e-02 120 chr2L:6307005-6307125 7.61e-03 8_[+1(8.84e-07)]_104 chr3L:11276351-11276471 9.74e-01 120 chr2L:13099311-13099431 1.04e-01 120 chr3R:9075022-9075142 3.25e-01 120 chr3R:26325083-26325203 1.31e-01 120 chr3L:1449492-1449612 6.62e-03 91_[+1(4.15e-05)]_21 chrX:10736147-10736267 5.52e-02 120 chr3R:10759506-10759626 9.93e-01 120 chr2R:24287252-24287372 1.00e+00 120 chr3R:15410346-15410466 1.00e+00 120 chr3R:18578281-18578401 5.10e-02 120 chr3L:9339133-9339253 7.40e-02 120 chr2R:12534677-12534797 1.39e-01 120 chr3L:4663904-4664024 5.34e-01 120 chrX:10345854-10345974 1.13e-01 120 chr2L:14095078-14095198 3.31e-01 120 chr2L:4335537-4335657 2.38e-01 120 chrX:19664280-19664400 4.82e-01 120 chrX:15128339-15128459 7.21e-02 101_[+4(3.06e-05)]_11 chr2R:16617545-16617665 3.51e-01 120 chr2L:9735483-9735603 8.62e-01 120 chr3R:21852068-21852188 1.23e-02 120 chr3R:7945104-7945224 7.80e-01 120 chr3R:20605733-20605853 7.34e-02 120 chrX:8110448-8110568 9.85e-01 120 chr2L:9550999-9551119 1.56e-03 87_[+5(6.09e-05)]_25 chr2L:2612523-2612643 9.92e-01 120 chrX:5428902-5429022 7.88e-02 120 chr2R:14973053-14973173 9.87e-01 120 chr3R:19890435-19890555 9.28e-03 75_[+1(1.30e-05)]_37 chr2L:21071658-21071778 1.44e-01 120 chr2L:9737865-9737985 5.94e-01 120 chr2R:18331466-18331586 1.35e-01 7_[+1(5.58e-05)]_105 chr2L:870147-870267 9.50e-01 120 chr3R:15518811-15518931 2.53e-03 37_[+5(6.09e-05)]_75 chr3L:22053211-22053331 5.44e-01 120 chr3R:14218019-14218139 9.90e-01 120 chr3R:21757973-21758093 3.04e-01 120 chr2L:23372851-23372971 1.53e-01 120 chr3R:21298888-21299008 1.00e+00 120 chr3L:9092769-9092889 9.86e-01 120 chr3R:14285700-14285820 9.95e-01 120 chr3R:30083395-30083515 8.31e-01 120 chr2L:5302391-5302511 4.12e-01 120 chr3L:25121163-25121283 2.84e-01 120 chr3R:13828104-13828224 1.03e-01 120 chr3L:19696689-19696809 3.20e-01 120 chr3R:28025416-28025536 2.11e-02 51_[+1(6.03e-05)]_61 chrX:9399903-9400023 1.73e-01 120 chr3L:20884137-20884257 9.96e-01 120 chr3R:22780210-22780330 5.70e-01 120 chr3L:20537856-20537976 1.26e-01 120 chr2L:16672428-16672548 8.41e-01 120 chr3R:27655066-27655186 7.32e-03 120 chr3L:5821563-5821683 5.18e-02 120 chr3L:8453962-8454082 6.15e-01 120 chr2L:4417045-4417165 9.20e-01 120 chr3L:1612304-1612424 1.53e-07 10_[+3(2.57e-05)]_26_[+1(1.76e-05)]_\ 8_[+3(1.01e-05)]_7_[+4(8.65e-06)]_37 chr3L:16746219-16746339 1.00e+00 120 chr3R:10081580-10081700 1.58e-02 102_[+4(1.75e-05)]_10 chr2R:8086964-8087084 1.42e-02 120 chr3L:17401038-17401158 1.23e-01 73_[+1(6.03e-05)]_39 chr2L:18878279-18878399 2.73e-05 35_[+4(2.21e-05)]_64_[+1(2.55e-06)]_\ 5 chr2R:10553789-10553909 1.20e-02 86_[+1(7.26e-06)]_26 chr2R:6648302-6648422 1.89e-02 [+1(4.31e-05)]_67_[+1(9.83e-05)]_37 chrX:13935684-13935804 5.31e-02 11_[+4(1.75e-05)]_101 chr3L:8878579-8878699 2.64e-01 120 chr2L:3646139-3646259 6.77e-03 8_[+5(6.09e-05)]_104 chr3R:23902247-23902367 9.98e-01 120 chrX:19069458-19069578 2.09e-01 120 chr2R:7730144-7730264 8.63e-01 120 chrX:1508191-1508311 6.94e-01 120 chrX:19292714-19292834 6.06e-01 120 chr3L:4414671-4414791 2.51e-02 37_[+1(2.71e-05)]_75 chr2R:21409726-21409846 4.40e-01 120 chr3R:13782999-13783119 3.02e-01 120 chr3L:14381705-14381825 9.99e-01 120 chr2L:8099378-8099498 2.08e-01 120 chr2L:1118185-1118305 4.05e-02 120 chr3R:5804745-5804865 2.76e-01 120 chr2R:5340588-5340708 5.89e-01 120 chrX:11378529-11378649 3.40e-01 120 chr2R:1513651-1513771 7.99e-01 120 chr3R:10228152-10228272 8.33e-01 120 chr3L:7719543-7719663 2.18e-01 120 chr2L:21369974-21370094 1.05e-02 120 chrX:14909137-14909257 1.53e-02 46_[+5(6.09e-05)]_66 chr3R:24116317-24116437 8.42e-01 120 chr3R:5011182-5011302 1.23e-04 57_[+4(7.87e-05)]_23_[+1(1.76e-05)]_\ 24 chr3L:6296719-6296839 7.74e-04 81_[+4(2.21e-05)]_31 chr2R:9685741-9685861 3.89e-02 120 chr2L:5210198-5210318 5.42e-01 120 chrX:18369654-18369774 3.73e-01 120 chr3R:24149084-24149204 7.09e-01 120 chr3R:28025617-28025737 1.11e-01 2_[+1(6.03e-05)]_110 chrX:17694037-17694157 9.48e-01 120 chrX:17021526-17021646 5.81e-01 120 chr3R:4694913-4695033 3.17e-01 120 chrX:10756253-10756373 7.87e-01 120 chrX:2685161-2685281 1.77e-03 54_[+4(8.65e-06)]_58 chr3R:13818979-13819099 2.89e-03 23_[+4(8.65e-06)]_89 chr3R:21195659-21195779 9.47e-01 120 chrX:11341240-11341360 9.77e-01 120 chr3R:5839081-5839201 1.97e-02 14_[+1(4.40e-05)]_98 chr3L:13918830-13918950 6.24e-01 120 chr3R:26671788-26671908 1.89e-02 26_[+4(5.25e-05)]_86 chr2L:19416005-19416125 9.99e-01 120 chr3R:30915159-30915279 4.63e-02 52_[+4(1.75e-05)]_60 chr3R:26248192-26248312 9.99e-01 120 chr2L:5303051-5303171 6.72e-01 120 chr2L:4896903-4897023 2.41e-02 14_[+4(8.65e-06)]_98 chr2L:5434486-5434606 2.94e-02 71_[+2(6.07e-06)]_41 chr2L:5209990-5210110 8.03e-01 120 chr2L:13399815-13399935 1.19e-03 92_[+2(3.06e-06)]_20 chrX:15530545-15530665 1.00e+00 120 chr3L:11599447-11599567 9.98e-01 120 chr3R:17214932-17215052 4.76e-01 120 chr3L:11292597-11292717 1.00e+00 120 chr3R:31712732-31712852 1.11e-01 120 chrX:9061416-9061536 9.50e-01 120 chr2L:3308114-3308234 4.70e-01 120 chr3R:10380124-10380244 9.95e-01 120 chr3R:18546277-18546397 9.73e-01 120 chr2R:10252660-10252780 1.22e-02 94_[+4(8.72e-05)]_18 chr2R:21702519-21702639 8.84e-05 65_[+3(1.63e-06)]_27_[+4(3.06e-05)]_\ 12 chr3L:8580854-8580974 2.70e-01 120 chr2R:9078651-9078771 3.53e-02 120 chr2R:6769957-6770077 6.47e-01 120 chr3L:1741327-1741447 9.78e-01 120 chr2L:3584202-3584322 8.77e-01 120 chr3R:10679293-10679413 9.56e-01 120 chrX:20433491-20433611 9.72e-01 120 chr2R:11068874-11068994 6.53e-01 120 chr2R:9745210-9745330 5.75e-06 6_[+5(6.09e-05)]_23_[+5(1.70e-06)]_\ 25_[+3(4.12e-06)]_42 chr3L:20000398-20000518 3.55e-01 120 chr3L:16166970-16167090 4.75e-06 5_[+1(4.15e-05)]_9_[+3(1.63e-06)]_\ 90 chr3L:9466768-9466888 8.47e-01 120 chr3L:2800482-2800602 2.93e-01 120 chr2R:16818807-16818927 7.29e-01 120 chr3R:16356656-16356776 1.16e-01 120 chr3L:6084546-6084666 4.68e-01 120 chr3R:14071049-14071169 4.42e-03 79_[+1(2.55e-06)]_33 chrX:12672383-12672503 1.19e-02 120 chrX:16581861-16581981 9.44e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************