******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5180.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:17269626-17269746 1.0000 120 chr2R:22667681-22667801 1.0000 120 chrX:3027796-3027916 1.0000 120 chrX:14871167-14871287 1.0000 120 chr3R:13374980-13375100 1.0000 120 chr3L:16545650-16545770 1.0000 120 chr3L:437746-437866 1.0000 120 chrX:10869184-10869304 1.0000 120 chr3R:10379529-10379649 1.0000 120 chr2R:13308334-13308454 1.0000 120 chrX:19096318-19096438 1.0000 120 chr3R:26553445-26553565 1.0000 120 chr2L:3265774-3265894 1.0000 120 chr3L:22638274-22638394 1.0000 120 chr3R:4724572-4724692 1.0000 120 chr2L:3199695-3199815 1.0000 120 chr2L:12114298-12114418 1.0000 120 chr3L:11678452-11678572 1.0000 120 chr2L:10474954-10475074 1.0000 120 chr2L:13154452-13154572 1.0000 120 chr3L:6610341-6610461 1.0000 120 chr3R:23009605-23009725 1.0000 120 chr3L:17255978-17256098 1.0000 120 chr2R:22563934-22564054 1.0000 120 chr4:590392-590512 1.0000 120 chr2R:6891557-6891677 1.0000 120 chr2L:5288860-5288980 1.0000 120 chrX:1686480-1686600 1.0000 120 chr3R:26871991-26872111 1.0000 120 chrX:3279297-3279417 1.0000 120 chr2L:11928585-11928705 1.0000 120 chr2R:21585689-21585809 1.0000 120 chr3R:27596148-27596268 1.0000 120 chr3L:17254351-17254471 1.0000 120 chr2L:20017941-20018061 1.0000 120 chr3L:2157671-2157791 1.0000 120 chrX:3884043-3884163 1.0000 120 chrX:1163154-1163274 1.0000 120 chr2L:11942433-11942553 1.0000 120 chr2R:19067097-19067217 1.0000 120 chr2L:7591063-7591183 1.0000 120 chr3L:7643674-7643794 1.0000 120 chr3R:15825611-15825731 1.0000 120 chr2R:16732086-16732206 1.0000 120 chr2L:18009837-18009957 1.0000 120 chr2L:6075998-6076118 1.0000 120 chr2L:9019561-9019681 1.0000 120 chr2R:16552855-16552975 1.0000 120 chr3L:17389521-17389641 1.0000 120 chr3R:15474265-15474385 1.0000 120 chr3L:4096717-4096837 1.0000 120 chr2L:13777426-13777546 1.0000 120 chrX:10839126-10839246 1.0000 120 chr3L:248498-248618 1.0000 120 chr3R:18547095-18547215 1.0000 120 chr2L:3441297-3441417 1.0000 120 chr2L:8466759-8466879 1.0000 120 chr2R:12236142-12236262 1.0000 120 chr2R:9493461-9493581 1.0000 120 chrX:19837431-19837551 1.0000 120 chrX:498573-498693 1.0000 120 chr2L:9124587-9124707 1.0000 120 chr2L:274384-274504 1.0000 120 chr2L:10711360-10711480 1.0000 120 chr2R:12236341-12236461 1.0000 120 chr3L:20388271-20388391 1.0000 120 chrX:909116-909236 1.0000 120 chr2R:7896590-7896710 1.0000 120 chr3R:20288353-20288473 1.0000 120 chr2L:18590226-18590346 1.0000 120 chr2L:3442597-3442717 1.0000 120 chr2L:3231378-3231498 1.0000 120 chrX:19420447-19420567 1.0000 120 chr2L:2923109-2923229 1.0000 120 chr2R:22693740-22693860 1.0000 120 chr3L:4383845-4383965 1.0000 120 chr2L:12119921-12120041 1.0000 120 chrX:3738966-3739086 1.0000 120 chrX:18666027-18666147 1.0000 120 chrX:6779943-6780063 1.0000 120 chr2R:11838354-11838474 1.0000 120 chr3L:16452004-16452124 1.0000 120 chr3R:5045556-5045676 1.0000 120 chr2R:18635005-18635125 1.0000 120 chr2R:12229245-12229365 1.0000 120 chr2R:15052558-15052678 1.0000 120 chr3L:12351560-12351680 1.0000 120 chrX:13258195-13258315 1.0000 120 chr2L:20017214-20017334 1.0000 120 chr2L:3441496-3441616 1.0000 120 chrX:6309059-6309179 1.0000 120 chr2R:8797512-8797632 1.0000 120 chrX:1685258-1685378 1.0000 120 chr3R:5502750-5502870 1.0000 120 chrX:1675909-1676029 1.0000 120 chr3R:8963333-8963453 1.0000 120 chr2L:531595-531715 1.0000 120 chr2L:7078960-7079080 1.0000 120 chr2L:10544561-10544681 1.0000 120 chr3L:18743206-18743326 1.0000 120 chr3L:2159961-2160081 1.0000 120 chr2R:9351765-9351885 1.0000 120 chrX:4927217-4927337 1.0000 120 chr2L:18012288-18012408 1.0000 120 chr3L:2879387-2879507 1.0000 120 chr3R:22577107-22577227 1.0000 120 chrX:16175182-16175302 1.0000 120 chr3L:10813428-10813548 1.0000 120 chrX:3887763-3887883 1.0000 120 chrX:15480301-15480421 1.0000 120 chr3R:17954431-17954551 1.0000 120 chr3R:26195072-26195192 1.0000 120 chr2R:11755807-11755927 1.0000 120 chr2R:20596895-20597015 1.0000 120 chr2L:8475653-8475773 1.0000 120 chr2R:9494120-9494240 1.0000 120 chr2R:24547637-24547757 1.0000 120 chr2L:21770349-21770469 1.0000 120 chr3R:24150229-24150349 1.0000 120 chr3R:14297659-14297779 1.0000 120 chr3L:18539971-18540091 1.0000 120 chrX:811563-811683 1.0000 120 chr3L:1370477-1370597 1.0000 120 chr3L:1370252-1370372 1.0000 120 chr2R:15242517-15242637 1.0000 120 chr2R:11493910-11494030 1.0000 120 chr2R:18635254-18635374 1.0000 120 chr2R:20597103-20597223 1.0000 120 chr3R:32026622-32026742 1.0000 120 chr2R:24551254-24551374 1.0000 120 chr2R:11325591-11325711 1.0000 120 chr2L:5406479-5406599 1.0000 120 chrX:5680157-5680277 1.0000 120 chrX:15125658-15125778 1.0000 120 chr2R:7187119-7187239 1.0000 120 chrX:18926069-18926189 1.0000 120 chr3L:16401980-16402100 1.0000 120 chr3R:12128446-12128566 1.0000 120 chr2R:9369298-9369418 1.0000 120 chrX:9501051-9501171 1.0000 120 chrX:5679954-5680074 1.0000 120 chr2R:24547839-24547959 1.0000 120 chr3R:10780316-10780436 1.0000 120 chrX:5118447-5118567 1.0000 120 chr3L:2879144-2879264 1.0000 120 chr2L:12120126-12120246 1.0000 120 chr3R:14821304-14821424 1.0000 120 chr2R:21572258-21572378 1.0000 120 chrX:3025956-3026076 1.0000 120 chr2L:10748213-10748333 1.0000 120 chr2R:10190545-10190665 1.0000 120 chrX:9119041-9119161 1.0000 120 chr3L:20193537-20193657 1.0000 120 chr2R:21255754-21255874 1.0000 120 chr3L:12868107-12868227 1.0000 120 chr2L:19917907-19918027 1.0000 120 chr3R:18795137-18795257 1.0000 120 chr3L:248281-248401 1.0000 120 chr2R:17127952-17128072 1.0000 120 chr2L:3294711-3294831 1.0000 120 chr2R:20164701-20164821 1.0000 120 chr2R:11494740-11494860 1.0000 120 chr3R:15150244-15150364 1.0000 120 chr3L:7848051-7848171 1.0000 120 chr2L:9071352-9071472 1.0000 120 chr2L:11027993-11028113 1.0000 120 chr2L:13266832-13266952 1.0000 120 chr3R:9249164-9249284 1.0000 120 chr3L:5523134-5523254 1.0000 120 chr2R:7451439-7451559 1.0000 120 chr3L:14064105-14064225 1.0000 120 chr3R:21719582-21719702 1.0000 120 chr3L:19331880-19332000 1.0000 120 chr3L:21706550-21706670 1.0000 120 chr3L:19331056-19331176 1.0000 120 chr3L:589731-589851 1.0000 120 chr3R:16495006-16495126 1.0000 120 chrX:12777919-12778039 1.0000 120 chr2L:5050077-5050197 1.0000 120 chr2L:20399362-20399482 1.0000 120 chr2R:10128239-10128359 1.0000 120 chr3L:18540186-18540306 1.0000 120 chrX:18668451-18668571 1.0000 120 chr2L:2888147-2888267 1.0000 120 chr3R:16502716-16502836 1.0000 120 chr2L:19438804-19438924 1.0000 120 chrX:18693152-18693272 1.0000 120 chr2L:2891339-2891459 1.0000 120 chr2L:5781271-5781391 1.0000 120 chr2R:11789987-11790107 1.0000 120 chr2L:3422950-3423070 1.0000 120 chr2L:11219032-11219152 1.0000 120 chr3L:14754817-14754937 1.0000 120 chr2L:12539239-12539359 1.0000 120 chr2R:24543938-24544058 1.0000 120 chr3L:33527-33647 1.0000 120 chrX:12731170-12731290 1.0000 120 chr3R:29829395-29829515 1.0000 120 chr2L:20400987-20401107 1.0000 120 chr3L:3079209-3079329 1.0000 120 chr3R:8529122-8529242 1.0000 120 chrX:12745284-12745404 1.0000 120 chr3R:18548589-18548709 1.0000 120 chr2R:19836022-19836142 1.0000 120 chr2R:21234796-21234916 1.0000 120 chr2R:5893814-5893934 1.0000 120 chr3R:12477720-12477840 1.0000 120 chrX:7549235-7549355 1.0000 120 chrX:12716932-12717052 1.0000 120 chr3R:16495205-16495325 1.0000 120 chrX:13249596-13249716 1.0000 120 chr2L:6705285-6705405 1.0000 120 chr2R:7186911-7187031 1.0000 120 chr3L:1869241-1869361 1.0000 120 chr3L:2163821-2163941 1.0000 120 chr3R:14843467-14843587 1.0000 120 chr2L:21886877-21886997 1.0000 120 chrX:2973797-2973917 1.0000 120 chr2L:8466959-8467079 1.0000 120 chr3L:12457082-12457202 1.0000 120 chr3L:12590798-12590918 1.0000 120 chr3R:30460338-30460458 1.0000 120 chrX:19399639-19399759 1.0000 120 chr3R:22869190-22869310 1.0000 120 chr3R:5782941-5783061 1.0000 120 chr2L:10544794-10544914 1.0000 120 chr3L:5523342-5523462 1.0000 120 chr3L:22642141-22642261 1.0000 120 chr3L:4384074-4384194 1.0000 120 chr2L:3293857-3293977 1.0000 120 chrX:9745000-9745120 1.0000 120 chr3L:21706318-21706438 1.0000 120 chrX:498773-498893 1.0000 120 chr3L:136750-136870 1.0000 120 chr2R:21579824-21579944 1.0000 120 chr3L:19521004-19521124 1.0000 120 chrX:9136908-9137028 1.0000 120 chr2R:7098434-7098554 1.0000 120 chr3R:19006675-19006795 1.0000 120 chr3L:20005172-20005292 1.0000 120 chr3R:14766560-14766680 1.0000 120 chrX:4517561-4517681 1.0000 120 chrX:13236961-13237081 1.0000 120 chr3L:20562522-20562642 1.0000 120 chrX:11917197-11917317 1.0000 120 chr3R:13789857-13789977 1.0000 120 chr2L:11940752-11940872 1.0000 120 chr3R:18987567-18987687 1.0000 120 chr3R:10375529-10375649 1.0000 120 chrX:7242411-7242531 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG5180/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5180.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.265 C 0.243 G 0.238 T 0.254 Background letter frequencies (from file dataset with add-one prior applied): A 0.265 C 0.243 G 0.238 T 0.254 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AACATGTT MEME-1 width = 8 sites = 106 llr = 929 E-value = 1.4e-092 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACATGTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A aa:81::: pos.-specific C ::a:1::: probability G ::::1a:: matrix T :::28:a9 bits 2.1 * 1.9 *** * 1.7 *** *** 1.4 *** *** Relative 1.2 *** *** Entropy 1.0 *** *** (12.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACATGTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACATGTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18987567-18987687 45 1.76e-05 GCCGGGCCAC AACATGTT GCAGGGGAAA chr2R:21579824-21579944 54 1.76e-05 ACAACGTTCC AACATGTT GCAACTGAAG chr3R:22869190-22869310 61 1.76e-05 TGTGGCAGAC AACATGTT GCATGCGTTA chrX:2973797-2973917 105 1.76e-05 AAAGCGACGC AACATGTT CGATGATG chrX:7549235-7549355 54 1.76e-05 CTGCGCTTAC AACATGTT TGAGACATAA chr2R:5893814-5893934 40 1.76e-05 CTTTCTTGGC AACATGTT TAAAAGTCTT chr3R:18548589-18548709 34 1.76e-05 CTCCTCTTGC AACATGTT GCAGCGTAAT chr3R:29829395-29829515 80 1.76e-05 CGGTGGCTCA AACATGTT TGGCCGTAGC chr2L:12539239-12539359 84 1.76e-05 CGTGCGATCG AACAtgtt gctgatgctg chr2L:20399362-20399482 79 1.76e-05 GGTCGCATCG AACATGTT GGTGTTGGCT chr2R:11494740-11494860 47 1.76e-05 ATCGTTATCG AACATGTT CATCTTGCAC chr2R:20164701-20164821 35 1.76e-05 AAATGCTCCA AACATGTT GCGGTTTTCG chr2L:3294711-3294831 54 1.76e-05 TTCATCTGCC AACATGTT TGAAGTGCAC chr2R:17127952-17128072 49 1.76e-05 AACTCACTCA AACATGTT GCATTGCCCC chr3L:12868107-12868227 18 1.76e-05 AACGTACTCA AACATGTT GGCTGCCTCC chrX:5679954-5680074 61 1.76e-05 AGCGCGATCG AACATGTT GGCTGCCTGG chr2L:5406479-5406599 77 1.76e-05 GACAACATGC AACATGTT GCAGCCCAGC chr3R:32026622-32026742 68 1.76e-05 AAAGTCAAGC AACATGTT TGACAAGTGA chr2R:15242517-15242637 75 1.76e-05 TTACGACCGC AACATGTT GCAAGTTGGA chr3L:1370252-1370372 73 1.76e-05 TCGAACCTCG AACATGTT TGCTGCACCT chr2L:8475653-8475773 71 1.76e-05 CCGCACTTGC AACATGTT GCATGGCTTG chr2R:11755807-11755927 47 1.76e-05 GCCACTTTGC AACATGTT GCTTGGATCA chr2R:9351765-9351885 99 1.76e-05 CTCGGGAAGC AACATGTT GGAGCCGCAG chr2L:7078960-7079080 21 1.76e-05 AACTCGCTGC AACATGTT GCAGTTGCAC chrX:6309059-6309179 9 1.76e-05 TGCGGTCC AACATGTT GTTGTTGCAT chr3L:12351560-12351680 54 1.76e-05 TCGATCAGCG AACATGTT GCAATCGGAT chr3L:16452004-16452124 80 1.76e-05 GTTTGAAGGC AACATGTT GCGAGCCGCG chr2L:12119921-12120041 34 1.76e-05 GGCTAGGTCG AACATGTT TGACGTCCGC chrX:19420447-19420567 67 1.76e-05 AAGGCCGTGC AACATGTT CCATGTTCGA chr2L:3231378-3231498 75 1.76e-05 CGCAGCCTCG AACATGTT GCATGTTGAG chr3L:20388271-20388391 65 1.76e-05 AAGCTTCCCG AACATGTT TGTCGCAGTT chr2R:12236142-12236262 70 1.76e-05 TTCGATTTCA AACATGTT GCAAAGAGCA chr3R:18547095-18547215 70 1.76e-05 CCTGCAATCG AACATGTT GCAACTATCC chr2R:16552855-16552975 50 1.76e-05 CCTCACGCCG AACATGTT GGCTTGTTTG chr2L:9019561-9019681 23 1.76e-05 TTTCACATGC AACATGTT GCAGTGTTCC chr2L:7591063-7591183 80 1.76e-05 ATCCTATTCA AACATGTT TGATATTCAT chr2L:11942433-11942553 44 1.76e-05 AAAAGTGTCC AACATGTT GGACAACCGA chr3L:2157671-2157791 82 1.76e-05 GGATGTTGGA AACATGTT TAGAGATCGG chr3R:27596148-27596268 103 1.76e-05 CGCTCGATCG AACATGTT GCGCCTGCGA chr3R:26871991-26872111 103 1.76e-05 GTTGGCTCCC AACATGTT CGCTTGGAAT chr2L:5288860-5288980 52 1.76e-05 tgcagcatgc aacatgTT CGACGGCCAC chr3L:6610341-6610461 101 1.76e-05 CCGAACATGG AACATGTT GCGTAGGGTT chr2L:13154452-13154572 42 1.76e-05 GTTCGCCTCG AACATGTT CGATCGCAAC chr3L:22638274-22638394 68 1.76e-05 ATCAGCTTCA AACATGTT GCCTTTTCGA chr2L:3265774-3265894 45 1.76e-05 CGTTCGCTGC AACATGTT GCATGGGGAC chrX:19096318-19096438 87 1.76e-05 TTGGCCGGCG AACATGTT GCATGCCGCG chr2R:13308334-13308454 37 1.76e-05 TGTGGCTTGC AACATGTT TGATCGAACA chr3R:10379529-10379649 74 1.76e-05 CAGCTGTTGC AACATGTT TCGTGTCTTT chr3R:13374980-13375100 14 1.76e-05 TGCTCGATGC AACATGTT GCATACACTT chrX:3027796-3027916 81 1.76e-05 AACTGCGGCC AACATGTT GCATGTTGCA chr2R:11493910-11494030 75 3.45e-05 GTTGCCTTCG AACTTGTT GCACTGCAAC chr3R:24150229-24150349 92 3.45e-05 CAGAACACTA AACTTGTT CGATTCAGTC chrX:3887763-3887883 62 3.45e-05 AACGAGCTCC AACTTGTT GGCTCTGCGG chrX:4927217-4927337 13 3.45e-05 GCCAGGAGCG AACTTGTT GGAGTCAAAC chr2R:9493461-9493581 72 3.45e-05 ATGCTGGACG AACTTGTT CGCATCGAAC chr2L:3441297-3441417 69 3.45e-05 GGTGTCAGCC AACTTGTT CGATGTTAAG chr3L:17254351-17254471 5 3.45e-05 GTCG AACTTGTT TGGCCTGAAG chr2L:11928585-11928705 60 3.45e-05 ATGTGCTCCG AACTTGTT CGATGCGGCA chr2L:12114298-12114418 43 3.45e-05 AAGCAACTCG AACTTGTT GCTGAGCCTC chr3L:437746-437866 3 3.45e-05 CG AACTTGTT GGCAGCCAAA chrX:12731170-12731290 45 5.14e-05 tgctggcaac aacacgtt gctgctgatg chr3L:18539971-18540091 88 5.14e-05 ATCCCTTTAC AACACGTT CGAGTCGTCT chr2L:21770349-21770469 69 5.14e-05 GGACTCGAAC AACACGTT CCAGTGCCAA chr2R:18635005-18635125 70 5.14e-05 GAACTTGAGA AACACGTT GATGATACGG chr2L:2923109-2923229 61 5.14e-05 CATTCCGTGC AACACGTT GGCAAGGGCA chr3R:15474265-15474385 19 5.14e-05 AAGTGCTTCG AACACGTT GCCATCTTCA chrX:3884043-3884163 26 5.14e-05 ACGAACCCCG AACACGTT CGATGCGAAA chrX:14871167-14871287 77 5.14e-05 TGGCACATCG AACACGTT GGATGGCCAA chr2R:11789987-11790107 9 6.79e-05 CCGCTGCC AACAGGTT CGAACGATAA chrX:9501051-9501171 111 6.79e-05 AAGCCCCTTC AACAGGTT GC chr3R:14297659-14297779 49 6.79e-05 GCTTTGTTCA AACAGGTT CGAACCGACT chr3L:17269626-17269746 46 6.79e-05 AAGCGAACCG AACAGGTT CGAGTTCGAG chrX:7242411-7242531 108 8.63e-05 CTCGCGGTCG AACAAGTT CGACG chr3R:14766560-14766680 28 8.63e-05 CGGACAAACC AACAAGTT CGACATCCAC chr2R:7186911-7187031 53 8.63e-05 GGAGCTATCA AACAAGTT CGATGTTGCA chr3L:5523134-5523254 102 8.63e-05 CTCAAAACAC AACAAGTT GCACTTCAAA chr3L:2879144-2879264 58 8.63e-05 AAATGTATCG AACAAGTT CGTGCTCGAA chr3L:20193537-20193657 43 1.02e-04 GTCGACAGCC AACGTGTT GTGATAAGAT chrX:9119041-9119161 18 1.02e-04 AGCCAACTCG AACGTGTT GCATGCAACC chr2R:16732086-16732206 80 1.02e-04 CTGCAAGTCT AACGTGTT GGCCACTGCA chr3R:10375529-10375649 51 1.35e-04 TGCCTAGTAC AACATGTG TTAAGCCAAC chr3L:20562522-20562642 108 1.35e-04 TTTTCATTCA AACATGTG TGTTG chr3L:20005172-20005292 54 1.35e-04 GACATGGCCC AACTCGTT AGGACCTCGA chr2R:24547839-24547959 24 1.35e-04 CTGGGCCGCA AACTCGTT TCAGCCATTT chr2R:9369298-9369418 37 1.35e-04 TGTGAGATGC AACATGTG ATACACTGTC chr2R:11325591-11325711 86 1.35e-04 CAGAAAAGAA AACTCGTT TAAGAGCGCA chr3L:2159961-2160081 29 1.35e-04 tgtctCACTT AACTCGTT TGCTTCGAGG chr2L:20017214-20017334 67 1.35e-04 AACGCGTTGA AACTCGTT TTTAGACTGA chrX:13236961-13237081 41 1.54e-04 ATGCGGCATG AACATTTT TGTATTACCC chr2L:13777426-13777546 50 1.54e-04 GTCATACAAA AACATTTT GCCGCCAAAC chr2R:22667681-22667801 113 1.54e-04 CACGAATGCG AACATTTT chr2L:9124587-9124707 60 1.70e-04 CGAAGGGAAC AACCTGTT TTCCCACCAC chr2R:21585689-21585809 31 1.70e-04 GCGAACATCG AACCTGTT CGAGGCACCG chr2R:19836022-19836142 37 2.03e-04 AACGACACCA AACATGTC CTGTGCTTAT chr3R:9249164-9249284 61 2.03e-04 TTGGCCATCG AGCATGTT CGATGCGGCT chrX:3025956-3026076 103 2.03e-04 GTTGGCTGCC AACATGTC GGATCAATCA chrX:909116-909236 103 2.03e-04 CACTGTTAGC AGCATGTT AAGCTGGGCA chr3L:14064105-14064225 52 2.18e-04 AATAGAATCA AACTGGTT TTTCTCTAGC chr3R:4724572-4724692 84 2.18e-04 TCCGCCGCTT AACTGGTT ACATTTTGTA chr2L:19438804-19438924 36 2.36e-04 acacgacCGA AACTAGTT TGGCCCAAAC chr3L:4383845-4383965 28 2.52e-04 AAAGGAAGCC AACTTGTG CCCCCATCGG chr2L:3442597-3442717 85 2.83e-04 TAAAGCCGGA CACATGTT TGGCTTGCCT chr2L:18590226-18590346 27 2.83e-04 ACAAATCCCC AACGCGTT TGAACACAAA chrX:9136908-9137028 67 3.40e-04 TGCAGTGCTC AACTTTTT GGTACAAACT chr2L:21886877-21886997 46 3.40e-04 TAATATTTTG AAAATGTT CGATGCAGGA chr3L:248281-248401 2 3.40e-04 A AACATATT CGACAGAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACATGTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18987567-18987687 1.8e-05 44_[+1]_68 chr2R:21579824-21579944 1.8e-05 53_[+1]_59 chr3R:22869190-22869310 1.8e-05 60_[+1]_52 chrX:2973797-2973917 1.8e-05 104_[+1]_8 chrX:7549235-7549355 1.8e-05 53_[+1]_59 chr2R:5893814-5893934 1.8e-05 39_[+1]_73 chr3R:18548589-18548709 1.8e-05 33_[+1]_79 chr3R:29829395-29829515 1.8e-05 79_[+1]_33 chr2L:12539239-12539359 1.8e-05 83_[+1]_29 chr2L:20399362-20399482 1.8e-05 78_[+1]_34 chr2R:11494740-11494860 1.8e-05 46_[+1]_66 chr2R:20164701-20164821 1.8e-05 34_[+1]_78 chr2L:3294711-3294831 1.8e-05 53_[+1]_59 chr2R:17127952-17128072 1.8e-05 48_[+1]_64 chr3L:12868107-12868227 1.8e-05 17_[+1]_95 chrX:5679954-5680074 1.8e-05 60_[+1]_52 chr2L:5406479-5406599 1.8e-05 76_[+1]_36 chr3R:32026622-32026742 1.8e-05 67_[+1]_45 chr2R:15242517-15242637 1.8e-05 74_[+1]_38 chr3L:1370252-1370372 1.8e-05 72_[+1]_40 chr2L:8475653-8475773 1.8e-05 70_[+1]_42 chr2R:11755807-11755927 1.8e-05 46_[+1]_66 chr2R:9351765-9351885 1.8e-05 98_[+1]_14 chr2L:7078960-7079080 1.8e-05 20_[+1]_92 chrX:6309059-6309179 1.8e-05 8_[+1]_104 chr3L:12351560-12351680 1.8e-05 53_[+1]_59 chr3L:16452004-16452124 1.8e-05 79_[+1]_33 chr2L:12119921-12120041 1.8e-05 33_[+1]_79 chrX:19420447-19420567 1.8e-05 66_[+1]_46 chr2L:3231378-3231498 1.8e-05 74_[+1]_38 chr3L:20388271-20388391 1.8e-05 64_[+1]_48 chr2R:12236142-12236262 1.8e-05 69_[+1]_43 chr3R:18547095-18547215 1.8e-05 69_[+1]_43 chr2R:16552855-16552975 1.8e-05 49_[+1]_63 chr2L:9019561-9019681 1.8e-05 22_[+1]_90 chr2L:7591063-7591183 1.8e-05 79_[+1]_33 chr2L:11942433-11942553 1.8e-05 43_[+1]_69 chr3L:2157671-2157791 1.8e-05 81_[+1]_31 chr3R:27596148-27596268 1.8e-05 102_[+1]_10 chr3R:26871991-26872111 1.8e-05 102_[+1]_10 chr2L:5288860-5288980 1.8e-05 51_[+1]_61 chr3L:6610341-6610461 1.8e-05 100_[+1]_12 chr2L:13154452-13154572 1.8e-05 41_[+1]_71 chr3L:22638274-22638394 1.8e-05 67_[+1]_45 chr2L:3265774-3265894 1.8e-05 44_[+1]_68 chrX:19096318-19096438 1.8e-05 86_[+1]_26 chr2R:13308334-13308454 1.8e-05 36_[+1]_76 chr3R:10379529-10379649 1.8e-05 73_[+1]_39 chr3R:13374980-13375100 1.8e-05 13_[+1]_99 chrX:3027796-3027916 1.8e-05 80_[+1]_32 chr2R:11493910-11494030 3.5e-05 74_[+1]_38 chr3R:24150229-24150349 3.5e-05 91_[+1]_21 chrX:3887763-3887883 3.5e-05 61_[+1]_51 chrX:4927217-4927337 3.5e-05 12_[+1]_100 chr2R:9493461-9493581 3.5e-05 71_[+1]_41 chr2L:3441297-3441417 3.5e-05 68_[+1]_44 chr3L:17254351-17254471 3.5e-05 4_[+1]_108 chr2L:11928585-11928705 3.5e-05 59_[+1]_53 chr2L:12114298-12114418 3.5e-05 42_[+1]_70 chr3L:437746-437866 3.5e-05 2_[+1]_110 chrX:12731170-12731290 5.1e-05 44_[+1]_68 chr3L:18539971-18540091 5.1e-05 87_[+1]_25 chr2L:21770349-21770469 5.1e-05 68_[+1]_44 chr2R:18635005-18635125 5.1e-05 69_[+1]_43 chr2L:2923109-2923229 5.1e-05 60_[+1]_52 chr3R:15474265-15474385 5.1e-05 18_[+1]_94 chrX:3884043-3884163 5.1e-05 25_[+1]_87 chrX:14871167-14871287 5.1e-05 76_[+1]_36 chr2R:11789987-11790107 6.8e-05 8_[+1]_104 chrX:9501051-9501171 6.8e-05 110_[+1]_2 chr3R:14297659-14297779 6.8e-05 48_[+1]_64 chr3L:17269626-17269746 6.8e-05 45_[+1]_67 chrX:7242411-7242531 8.6e-05 107_[+1]_5 chr3R:14766560-14766680 8.6e-05 27_[+1]_85 chr2R:7186911-7187031 8.6e-05 52_[+1]_60 chr3L:5523134-5523254 8.6e-05 101_[+1]_11 chr3L:2879144-2879264 8.6e-05 57_[+1]_55 chr3L:20193537-20193657 0.0001 42_[+1]_70 chrX:9119041-9119161 0.0001 17_[+1]_95 chr2R:16732086-16732206 0.0001 79_[+1]_33 chr3R:10375529-10375649 0.00013 50_[+1]_62 chr3L:20562522-20562642 0.00013 107_[+1]_5 chr3L:20005172-20005292 0.00013 53_[+1]_59 chr2R:24547839-24547959 0.00013 23_[+1]_89 chr2R:9369298-9369418 0.00013 36_[+1]_76 chr2R:11325591-11325711 0.00013 85_[+1]_27 chr3L:2159961-2160081 0.00013 28_[+1]_84 chr2L:20017214-20017334 0.00013 66_[+1]_46 chrX:13236961-13237081 0.00015 40_[+1]_72 chr2L:13777426-13777546 0.00015 49_[+1]_63 chr2R:22667681-22667801 0.00015 112_[+1] chr2L:9124587-9124707 0.00017 59_[+1]_53 chr2R:21585689-21585809 0.00017 30_[+1]_82 chr2R:19836022-19836142 0.0002 36_[+1]_76 chr3R:9249164-9249284 0.0002 60_[+1]_52 chrX:3025956-3026076 0.0002 102_[+1]_10 chrX:909116-909236 0.0002 102_[+1]_10 chr3L:14064105-14064225 0.00022 51_[+1]_61 chr3R:4724572-4724692 0.00022 83_[+1]_29 chr2L:19438804-19438924 0.00024 35_[+1]_77 chr3L:4383845-4383965 0.00025 27_[+1]_85 chr2L:3442597-3442717 0.00028 84_[+1]_28 chr2L:18590226-18590346 0.00028 26_[+1]_86 chrX:9136908-9137028 0.00034 66_[+1]_46 chr2L:21886877-21886997 0.00034 45_[+1]_67 chr3L:248281-248401 0.00034 1_[+1]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACATGTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACATGTT width=8 seqs=106 chr3R:18987567-18987687 ( 45) AACATGTT 1 chr2R:21579824-21579944 ( 54) AACATGTT 1 chr3R:22869190-22869310 ( 61) AACATGTT 1 chrX:2973797-2973917 ( 105) AACATGTT 1 chrX:7549235-7549355 ( 54) AACATGTT 1 chr2R:5893814-5893934 ( 40) AACATGTT 1 chr3R:18548589-18548709 ( 34) AACATGTT 1 chr3R:29829395-29829515 ( 80) AACATGTT 1 chr2L:12539239-12539359 ( 84) AACATGTT 1 chr2L:20399362-20399482 ( 79) AACATGTT 1 chr2R:11494740-11494860 ( 47) AACATGTT 1 chr2R:20164701-20164821 ( 35) AACATGTT 1 chr2L:3294711-3294831 ( 54) AACATGTT 1 chr2R:17127952-17128072 ( 49) AACATGTT 1 chr3L:12868107-12868227 ( 18) AACATGTT 1 chrX:5679954-5680074 ( 61) AACATGTT 1 chr2L:5406479-5406599 ( 77) AACATGTT 1 chr3R:32026622-32026742 ( 68) AACATGTT 1 chr2R:15242517-15242637 ( 75) AACATGTT 1 chr3L:1370252-1370372 ( 73) AACATGTT 1 chr2L:8475653-8475773 ( 71) AACATGTT 1 chr2R:11755807-11755927 ( 47) AACATGTT 1 chr2R:9351765-9351885 ( 99) AACATGTT 1 chr2L:7078960-7079080 ( 21) AACATGTT 1 chrX:6309059-6309179 ( 9) AACATGTT 1 chr3L:12351560-12351680 ( 54) AACATGTT 1 chr3L:16452004-16452124 ( 80) AACATGTT 1 chr2L:12119921-12120041 ( 34) AACATGTT 1 chrX:19420447-19420567 ( 67) AACATGTT 1 chr2L:3231378-3231498 ( 75) AACATGTT 1 chr3L:20388271-20388391 ( 65) AACATGTT 1 chr2R:12236142-12236262 ( 70) AACATGTT 1 chr3R:18547095-18547215 ( 70) AACATGTT 1 chr2R:16552855-16552975 ( 50) AACATGTT 1 chr2L:9019561-9019681 ( 23) AACATGTT 1 chr2L:7591063-7591183 ( 80) AACATGTT 1 chr2L:11942433-11942553 ( 44) AACATGTT 1 chr3L:2157671-2157791 ( 82) AACATGTT 1 chr3R:27596148-27596268 ( 103) AACATGTT 1 chr3R:26871991-26872111 ( 103) AACATGTT 1 chr2L:5288860-5288980 ( 52) AACATGTT 1 chr3L:6610341-6610461 ( 101) AACATGTT 1 chr2L:13154452-13154572 ( 42) AACATGTT 1 chr3L:22638274-22638394 ( 68) AACATGTT 1 chr2L:3265774-3265894 ( 45) AACATGTT 1 chrX:19096318-19096438 ( 87) AACATGTT 1 chr2R:13308334-13308454 ( 37) AACATGTT 1 chr3R:10379529-10379649 ( 74) AACATGTT 1 chr3R:13374980-13375100 ( 14) AACATGTT 1 chrX:3027796-3027916 ( 81) AACATGTT 1 chr2R:11493910-11494030 ( 75) AACTTGTT 1 chr3R:24150229-24150349 ( 92) AACTTGTT 1 chrX:3887763-3887883 ( 62) AACTTGTT 1 chrX:4927217-4927337 ( 13) AACTTGTT 1 chr2R:9493461-9493581 ( 72) AACTTGTT 1 chr2L:3441297-3441417 ( 69) AACTTGTT 1 chr3L:17254351-17254471 ( 5) AACTTGTT 1 chr2L:11928585-11928705 ( 60) AACTTGTT 1 chr2L:12114298-12114418 ( 43) AACTTGTT 1 chr3L:437746-437866 ( 3) AACTTGTT 1 chrX:12731170-12731290 ( 45) AACACGTT 1 chr3L:18539971-18540091 ( 88) AACACGTT 1 chr2L:21770349-21770469 ( 69) AACACGTT 1 chr2R:18635005-18635125 ( 70) AACACGTT 1 chr2L:2923109-2923229 ( 61) AACACGTT 1 chr3R:15474265-15474385 ( 19) AACACGTT 1 chrX:3884043-3884163 ( 26) AACACGTT 1 chrX:14871167-14871287 ( 77) AACACGTT 1 chr2R:11789987-11790107 ( 9) AACAGGTT 1 chrX:9501051-9501171 ( 111) AACAGGTT 1 chr3R:14297659-14297779 ( 49) AACAGGTT 1 chr3L:17269626-17269746 ( 46) AACAGGTT 1 chrX:7242411-7242531 ( 108) AACAAGTT 1 chr3R:14766560-14766680 ( 28) AACAAGTT 1 chr2R:7186911-7187031 ( 53) AACAAGTT 1 chr3L:5523134-5523254 ( 102) AACAAGTT 1 chr3L:2879144-2879264 ( 58) AACAAGTT 1 chr3L:20193537-20193657 ( 43) AACGTGTT 1 chrX:9119041-9119161 ( 18) AACGTGTT 1 chr2R:16732086-16732206 ( 80) AACGTGTT 1 chr3R:10375529-10375649 ( 51) AACATGTG 1 chr3L:20562522-20562642 ( 108) AACATGTG 1 chr3L:20005172-20005292 ( 54) AACTCGTT 1 chr2R:24547839-24547959 ( 24) AACTCGTT 1 chr2R:9369298-9369418 ( 37) AACATGTG 1 chr2R:11325591-11325711 ( 86) AACTCGTT 1 chr3L:2159961-2160081 ( 29) AACTCGTT 1 chr2L:20017214-20017334 ( 67) AACTCGTT 1 chrX:13236961-13237081 ( 41) AACATTTT 1 chr2L:13777426-13777546 ( 50) AACATTTT 1 chr2R:22667681-22667801 ( 113) AACATTTT 1 chr2L:9124587-9124707 ( 60) AACCTGTT 1 chr2R:21585689-21585809 ( 31) AACCTGTT 1 chr2R:19836022-19836142 ( 37) AACATGTC 1 chr3R:9249164-9249284 ( 61) AGCATGTT 1 chrX:3025956-3026076 ( 103) AACATGTC 1 chrX:909116-909236 ( 103) AGCATGTT 1 chr3L:14064105-14064225 ( 52) AACTGGTT 1 chr3R:4724572-4724692 ( 84) AACTGGTT 1 chr2L:19438804-19438924 ( 36) AACTAGTT 1 chr3L:4383845-4383965 ( 28) AACTTGTG 1 chr2L:3442597-3442717 ( 85) CACATGTT 1 chr2L:18590226-18590346 ( 27) AACGCGTT 1 chrX:9136908-9137028 ( 67) AACTTTTT 1 chr2L:21886877-21886997 ( 46) AAAATGTT 1 chr3L:248281-248401 ( 2) AACATATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACATGTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.60434 E= 1.4e-092 190 -468 -1337 -1337 189 -1337 -366 -1337 -481 203 -1337 -1337 151 -368 -266 -43 -223 -88 -207 157 -481 -1337 200 -275 -1337 -1337 -1337 198 -1337 -368 -266 189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACATGTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 1.4e-092 0.990566 0.009434 0.000000 0.000000 0.981132 0.000000 0.018868 0.000000 0.009434 0.990566 0.000000 0.000000 0.754717 0.018868 0.037736 0.188679 0.056604 0.132075 0.056604 0.754717 0.009434 0.000000 0.952830 0.037736 0.000000 0.000000 0.000000 1.000000 0.000000 0.018868 0.037736 0.943396 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACATGTT MEME-1 regular expression -------------------------------------------------------------------------------- AACATGTT -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF MATCGAAC MEME-2 width = 8 sites = 73 llr = 572 E-value = 7.4e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif MATCGAAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 48:::aa: pos.-specific C 5:1a2::a probability G 112:8::: matrix T :27::::: bits 2.1 * * 1.9 * *** 1.7 * *** 1.4 * *** Relative 1.2 ***** Entropy 1.0 ***** (11.3 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATCGAAC consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATCGAAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8529122-8529242 3 1.61e-05 TC CATCGAAC CTCTGCGACA chr2L:20399362-20399482 111 1.61e-05 TGACGAATCT CATCGAAC AT chr3L:19331056-19331176 42 1.61e-05 GACCATCGAG CATCGAAC ATCAAGCACT chr2R:17127952-17128072 34 1.61e-05 AAAACCCTAC CATCGAAC TCACTCAAAC chr3L:2879144-2879264 95 1.61e-05 TTCATGTTCG CATCGAAC CAATGCGGGC chr2R:7187119-7187239 49 1.61e-05 ACCTTACCTT CATCGAAC ACGATCCACA chrX:16175182-16175302 28 1.61e-05 TTGGCTAcaa catcgaac cgaccaacca chr2R:8797512-8797632 60 1.61e-05 AGAGATGTTC CATCGAAC TTCTACTGCG chrX:13258195-13258315 24 1.61e-05 GATCTTATTG CATCGAAC TTTTGACATC chr3L:4383845-4383965 10 1.61e-05 CCACAGTTG CATCGAAC AAAGGAAGCC chr2R:9493461-9493581 82 1.61e-05 AACTTGTTCG CATCGAAC TTGATTTGGT chrX:10839126-10839246 94 1.61e-05 GTGAACACCA CATCGAAC ACCGGCATTC chr3L:4096717-4096837 58 1.61e-05 GAACCTCGAA CATCGAAC CTCGAAAATA chr2R:16732086-16732206 17 1.61e-05 ACTGTTGCAA CATCGAAC AAGCTCGTTC chrX:3027796-3027916 66 1.61e-05 GAACTGGAAG CATCGAAC TGCGGCCAAC chrX:9745000-9745120 70 3.37e-05 tccatcGATA AATCGaac taaccgacta chr2R:24543938-24544058 97 3.37e-05 CAGCACTGAA AATCGAAC GCAACGCAAA chr3L:16401980-16402100 90 3.37e-05 GAAGCGTTCG AATCGAAC ATCAAATTAA chr2R:20596895-20597015 15 3.37e-05 ttatcgatcg aatcgaac cTCCAACTAC chr2L:10544561-10544681 57 3.37e-05 CTCATGTTCG AATCGAAC TTCAGTCaac chr2L:20017941-20018061 106 3.37e-05 GCCAGCCCAG AATCGAAC ATGCTGG chr4:590392-590512 11 3.37e-05 AGGAGGTTGC AATCGAAC ATATGAAAGC chrX:19096318-19096438 111 3.37e-05 CGCGAGCTAA AATCGAAC AT chr3L:16545650-16545770 55 3.37e-05 AATCGAACGC AATCGAAC CGCATTAACA chr2R:22667681-22667801 51 3.37e-05 aacccaacca aatcgaac cGATCAACGC chr3L:14754817-14754937 4 6.60e-05 CTT CATCCAAC ATTTCTCTTG chr3R:26195072-26195192 21 6.60e-05 GCGGAAGGAG CATCCAAC TCGAACGTGT chr3R:17954431-17954551 50 6.60e-05 AGCCATCGAA GATCGAAC GTAAAGAAAG chr3L:17255978-17256098 66 6.60e-05 cagctaccaa catccaac GTTCGACAGT chr2R:13308334-13308454 46 6.60e-05 CAACATGTTT GATCGAAC ATTAAAATAC chr3L:1869241-1869361 92 1.15e-04 ATTTTTGTAG CTTCGAAC TTATTTGAAT chr2R:21234796-21234916 49 1.15e-04 ATCGCGTTAG CTTCGAAC ATTCGCGACC chr2L:3422950-3423070 92 1.15e-04 CGCGTTCGAA CTTCGAAC GCAACGTGCT chr2L:5781271-5781391 55 1.15e-04 TGCGCCCATG AATCCAAC ATAAATCtcg chrX:9501051-9501171 79 1.15e-04 TCGATGCTGG CAGCGAAC GCGGTTCGAG chrX:15125658-15125778 10 1.15e-04 ccacccaac cagcgaac caccgaccca chr2L:3231378-3231498 29 1.15e-04 AGTTTTAGCA AATCCAAC TGAAGTATCG chr3L:248498-248618 22 1.15e-04 GGCTCTTAAG CTTCGAAC CGACTATAAT chr2R:21585689-21585809 19 1.15e-04 AACCGCAAGG CAGCGAAC ATCGAACCTG chrX:2973797-2973917 5 1.48e-04 TACG AAGCGAAC GGTACGAGCG chr2L:18009837-18009957 25 1.48e-04 CGCAGTCGCG ATTCGAAC GCGCAACTCG chr3R:23009605-23009725 3 1.48e-04 GG AAGCGAAC TTGGCTCAAA chr3L:17269626-17269746 36 1.48e-04 CCTTGTCTGC AAGCGAAC CGAACAGGTT chr3L:12457082-12457202 60 1.95e-04 aaccaaaccg aaccgaac caaccgatcc chr2L:13266832-13266952 21 1.95e-04 ACCTCCGGCG AACCGAAC CCGACTTCAA chrX:5118447-5118567 16 1.95e-04 aaccaaacca aaccgaac cgaaccgaac chr2L:21770349-21770469 102 1.95e-04 TCCGACCGCA AACCGAAC AATGTCCGAC chr2R:18635005-18635125 56 1.95e-04 ttgggACAGT CGTCGAAC TTGAGAAACA chr2L:11942433-11942553 56 1.95e-04 CATGTTGGAC AACCGAAC TGGCGGCGCC chr3L:21706318-21706438 109 2.11e-04 ACGGCAGCCA AGTCGAAC TAAC chr2L:10544794-10544914 29 2.11e-04 TGGTTCGCTC AGTCGAAC GCATTCGAGT chr3R:29829395-29829515 1 2.11e-04 . AGTCGAAC GGTCAATGTA chrX:15480301-15480421 4 2.27e-04 aga gatccaac agcgacagca chr3R:15474265-15474385 85 2.27e-04 TCCTATCGTG GATCCAAC TTGGGATCCA chr2L:7591063-7591183 11 2.27e-04 ATCTCATCCT GATCCAAC GTGTTGCAGC chr3L:14064105-14064225 74 2.88e-04 TCTAGCTGCA GTTCGaac ccgaacccaa chr2L:11027993-11028113 71 2.88e-04 CCGCATTGTC CTTCCAAC CATTCCGACC chrX:9119041-9119161 7 2.88e-04 CCCTTG CAGCCAAC TCGAACGTGT chr2R:24551254-24551374 11 2.88e-04 TCAGCCCCAA CAGCCAAC AGATCGCGCG chr3L:1370252-1370372 61 2.88e-04 TTGGCAACGC GTTCGAAC CTCGAACATG chr3R:5502750-5502870 54 2.88e-04 GGCTGCTTCA GTTCGAAC CAACTTGGCG chr3R:10375529-10375649 61 3.36e-04 AACATGTGTT AAGCCAAC ATATACAGTC chrX:3279297-3279417 99 3.36e-04 TTCGAGTTCG AAGCCAAC TTTGGCCATT chr2L:10474954-10475074 110 3.36e-04 CTTGCAACAC ATTCCAAC ATG chrX:14871167-14871287 38 3.36e-04 AAATTCCGAA AAGCCAAC GCCACAGATG chr2L:7078960-7079080 53 3.52e-04 AATGCCGGAA ATGCGAAC TGATGCATCA chr3R:5045556-5045676 21 3.52e-04 gttgcttttT ATGCGAAC GTGCGTTACG chrX:7549235-7549355 13 3.67e-04 AAACAATTAA CCTCGAAC TTGGTGTTGC chrX:3025956-3026076 77 3.83e-04 tccaactgca actcgaac tTAGATCAGT chrX:13249596-13249716 36 4.00e-04 GGTTTTACAG CAACGAAC Taaaaaaaaa chrX:18668451-18668571 45 4.00e-04 TGCGTTAAGT CAACGAAC GCAGTCGCGC chr3L:7643674-7643794 44 4.36e-04 TTAGAAAGGA CATCAAAC AAGGTTTGGT chr2R:10128239-10128359 12 4.56e-04 TATTTTGTGG AATCAAAC CGAGTCCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATCGAAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8529122-8529242 1.6e-05 2_[+2]_110 chr2L:20399362-20399482 1.6e-05 110_[+2]_2 chr3L:19331056-19331176 1.6e-05 41_[+2]_71 chr2R:17127952-17128072 1.6e-05 33_[+2]_79 chr3L:2879144-2879264 1.6e-05 94_[+2]_18 chr2R:7187119-7187239 1.6e-05 48_[+2]_64 chrX:16175182-16175302 1.6e-05 27_[+2]_85 chr2R:8797512-8797632 1.6e-05 59_[+2]_53 chrX:13258195-13258315 1.6e-05 23_[+2]_89 chr3L:4383845-4383965 1.6e-05 9_[+2]_103 chr2R:9493461-9493581 1.6e-05 81_[+2]_31 chrX:10839126-10839246 1.6e-05 93_[+2]_19 chr3L:4096717-4096837 1.6e-05 57_[+2]_55 chr2R:16732086-16732206 1.6e-05 16_[+2]_96 chrX:3027796-3027916 1.6e-05 65_[+2]_47 chrX:9745000-9745120 3.4e-05 69_[+2]_43 chr2R:24543938-24544058 3.4e-05 96_[+2]_16 chr3L:16401980-16402100 3.4e-05 89_[+2]_23 chr2R:20596895-20597015 3.4e-05 14_[+2]_98 chr2L:10544561-10544681 3.4e-05 56_[+2]_56 chr2L:20017941-20018061 3.4e-05 105_[+2]_7 chr4:590392-590512 3.4e-05 10_[+2]_102 chrX:19096318-19096438 3.4e-05 110_[+2]_2 chr3L:16545650-16545770 3.4e-05 54_[+2]_58 chr2R:22667681-22667801 3.4e-05 50_[+2]_62 chr3L:14754817-14754937 6.6e-05 3_[+2]_109 chr3R:26195072-26195192 6.6e-05 20_[+2]_92 chr3R:17954431-17954551 6.6e-05 49_[+2]_63 chr3L:17255978-17256098 6.6e-05 65_[+2]_47 chr2R:13308334-13308454 6.6e-05 45_[+2]_67 chr3L:1869241-1869361 0.00011 91_[+2]_21 chr2R:21234796-21234916 0.00011 48_[+2]_64 chr2L:3422950-3423070 0.00011 91_[+2]_21 chr2L:5781271-5781391 0.00011 54_[+2]_58 chrX:9501051-9501171 0.00011 78_[+2]_34 chrX:15125658-15125778 0.00011 9_[+2]_103 chr2L:3231378-3231498 0.00011 28_[+2]_84 chr3L:248498-248618 0.00011 21_[+2]_91 chr2R:21585689-21585809 0.00011 18_[+2]_94 chrX:2973797-2973917 0.00015 4_[+2]_108 chr2L:18009837-18009957 0.00015 24_[+2]_88 chr3R:23009605-23009725 0.00015 2_[+2]_110 chr3L:17269626-17269746 0.00015 35_[+2]_77 chr3L:12457082-12457202 0.00019 59_[+2]_53 chr2L:13266832-13266952 0.00019 20_[+2]_92 chrX:5118447-5118567 0.00019 15_[+2]_97 chr2L:21770349-21770469 0.00019 101_[+2]_11 chr2R:18635005-18635125 0.00019 55_[+2]_57 chr2L:11942433-11942553 0.00019 55_[+2]_57 chr3L:21706318-21706438 0.00021 108_[+2]_4 chr2L:10544794-10544914 0.00021 28_[+2]_84 chr3R:29829395-29829515 0.00021 [+2]_112 chrX:15480301-15480421 0.00023 3_[+2]_109 chr3R:15474265-15474385 0.00023 84_[+2]_28 chr2L:7591063-7591183 0.00023 10_[+2]_102 chr3L:14064105-14064225 0.00029 73_[+2]_39 chr2L:11027993-11028113 0.00029 70_[+2]_42 chrX:9119041-9119161 0.00029 6_[+2]_106 chr2R:24551254-24551374 0.00029 10_[+2]_102 chr3L:1370252-1370372 0.00029 60_[+2]_52 chr3R:5502750-5502870 0.00029 53_[+2]_59 chr3R:10375529-10375649 0.00034 60_[+2]_52 chrX:3279297-3279417 0.00034 98_[+2]_14 chr2L:10474954-10475074 0.00034 109_[+2]_3 chrX:14871167-14871287 0.00034 37_[+2]_75 chr2L:7078960-7079080 0.00035 52_[+2]_60 chr3R:5045556-5045676 0.00035 20_[+2]_92 chrX:7549235-7549355 0.00037 12_[+2]_100 chrX:3025956-3026076 0.00038 76_[+2]_36 chrX:13249596-13249716 0.0004 35_[+2]_77 chrX:18668451-18668571 0.0004 44_[+2]_68 chr3L:7643674-7643794 0.00044 43_[+2]_69 chr2R:10128239-10128359 0.00046 11_[+2]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATCGAAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MATCGAAC width=8 seqs=73 chr3R:8529122-8529242 ( 3) CATCGAAC 1 chr2L:20399362-20399482 ( 111) CATCGAAC 1 chr3L:19331056-19331176 ( 42) CATCGAAC 1 chr2R:17127952-17128072 ( 34) CATCGAAC 1 chr3L:2879144-2879264 ( 95) CATCGAAC 1 chr2R:7187119-7187239 ( 49) CATCGAAC 1 chrX:16175182-16175302 ( 28) CATCGAAC 1 chr2R:8797512-8797632 ( 60) CATCGAAC 1 chrX:13258195-13258315 ( 24) CATCGAAC 1 chr3L:4383845-4383965 ( 10) CATCGAAC 1 chr2R:9493461-9493581 ( 82) CATCGAAC 1 chrX:10839126-10839246 ( 94) CATCGAAC 1 chr3L:4096717-4096837 ( 58) CATCGAAC 1 chr2R:16732086-16732206 ( 17) CATCGAAC 1 chrX:3027796-3027916 ( 66) CATCGAAC 1 chrX:9745000-9745120 ( 70) AATCGAAC 1 chr2R:24543938-24544058 ( 97) AATCGAAC 1 chr3L:16401980-16402100 ( 90) AATCGAAC 1 chr2R:20596895-20597015 ( 15) AATCGAAC 1 chr2L:10544561-10544681 ( 57) AATCGAAC 1 chr2L:20017941-20018061 ( 106) AATCGAAC 1 chr4:590392-590512 ( 11) AATCGAAC 1 chrX:19096318-19096438 ( 111) AATCGAAC 1 chr3L:16545650-16545770 ( 55) AATCGAAC 1 chr2R:22667681-22667801 ( 51) AATCGAAC 1 chr3L:14754817-14754937 ( 4) CATCCAAC 1 chr3R:26195072-26195192 ( 21) CATCCAAC 1 chr3R:17954431-17954551 ( 50) GATCGAAC 1 chr3L:17255978-17256098 ( 66) CATCCAAC 1 chr2R:13308334-13308454 ( 46) GATCGAAC 1 chr3L:1869241-1869361 ( 92) CTTCGAAC 1 chr2R:21234796-21234916 ( 49) CTTCGAAC 1 chr2L:3422950-3423070 ( 92) CTTCGAAC 1 chr2L:5781271-5781391 ( 55) AATCCAAC 1 chrX:9501051-9501171 ( 79) CAGCGAAC 1 chrX:15125658-15125778 ( 10) CAGCGAAC 1 chr2L:3231378-3231498 ( 29) AATCCAAC 1 chr3L:248498-248618 ( 22) CTTCGAAC 1 chr2R:21585689-21585809 ( 19) CAGCGAAC 1 chrX:2973797-2973917 ( 5) AAGCGAAC 1 chr2L:18009837-18009957 ( 25) ATTCGAAC 1 chr3R:23009605-23009725 ( 3) AAGCGAAC 1 chr3L:17269626-17269746 ( 36) AAGCGAAC 1 chr3L:12457082-12457202 ( 60) AACCGAAC 1 chr2L:13266832-13266952 ( 21) AACCGAAC 1 chrX:5118447-5118567 ( 16) AACCGAAC 1 chr2L:21770349-21770469 ( 102) AACCGAAC 1 chr2R:18635005-18635125 ( 56) CGTCGAAC 1 chr2L:11942433-11942553 ( 56) AACCGAAC 1 chr3L:21706318-21706438 ( 109) AGTCGAAC 1 chr2L:10544794-10544914 ( 29) AGTCGAAC 1 chr3R:29829395-29829515 ( 1) AGTCGAAC 1 chrX:15480301-15480421 ( 4) GATCCAAC 1 chr3R:15474265-15474385 ( 85) GATCCAAC 1 chr2L:7591063-7591183 ( 11) GATCCAAC 1 chr3L:14064105-14064225 ( 74) GTTCGAAC 1 chr2L:11027993-11028113 ( 71) CTTCCAAC 1 chrX:9119041-9119161 ( 7) CAGCCAAC 1 chr2R:24551254-24551374 ( 11) CAGCCAAC 1 chr3L:1370252-1370372 ( 61) GTTCGAAC 1 chr3R:5502750-5502870 ( 54) GTTCGAAC 1 chr3R:10375529-10375649 ( 61) AAGCCAAC 1 chrX:3279297-3279417 ( 99) AAGCCAAC 1 chr2L:10474954-10475074 ( 110) ATTCCAAC 1 chrX:14871167-14871287 ( 38) AAGCCAAC 1 chr2L:7078960-7079080 ( 53) ATGCGAAC 1 chr3R:5045556-5045676 ( 21) ATGCGAAC 1 chrX:7549235-7549355 ( 13) CCTCGAAC 1 chrX:3025956-3026076 ( 77) ACTCGAAC 1 chrX:13249596-13249716 ( 36) CAACGAAC 1 chrX:18668451-18668571 ( 45) CAACGAAC 1 chr3L:7643674-7643794 ( 44) CATCAAAC 1 chr2R:10128239-10128359 ( 12) AATCAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATCGAAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0085 E= 7.4e-015 72 90 -112 -1283 151 -314 -212 -63 -327 -182 -42 152 -1283 204 -1283 -1283 -327 -24 169 -1283 191 -1283 -1283 -1283 191 -1283 -1283 -1283 -1283 204 -1283 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATCGAAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 7.4e-015 0.438356 0.452055 0.109589 0.000000 0.753425 0.027397 0.054795 0.164384 0.027397 0.068493 0.178082 0.726027 0.000000 1.000000 0.000000 0.000000 0.027397 0.205479 0.767123 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATCGAAC MEME-2 regular expression -------------------------------------------------------------------------------- [CA]ATC[GC]AAC -------------------------------------------------------------------------------- Time 13.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CRWGTTCG MEME-3 width = 8 sites = 55 llr = 444 E-value = 2.3e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRWGTTCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :55::::: pos.-specific C 9:1:::7: probability G :41a::1a matrix T 1:3:aa1: bits 2.1 *** * 1.9 *** * 1.7 *** * 1.4 * *** * Relative 1.2 * *** * Entropy 1.0 * *** * (11.6 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGTTCG consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWGTTCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13789857-13789977 62 1.52e-05 AGGTTTGAGC CAAGTTCG GCTCGGGCCC chrX:5679954-5680074 82 1.52e-05 TGCCTGGCAA CAAGTTCG ATGCGAACTT chr2R:22693740-22693860 41 1.52e-05 CAACTCCCCA CAAGTTCG AGTCGGAGAC chr2L:3231378-3231498 49 1.52e-05 AAGTATCGAA CAAGTTCG CTTGTGGCCG chr2L:274384-274504 96 1.52e-05 TGACAAAGGA CAAGTTCG AATTAGAACG chr2R:12236142-12236262 56 1.52e-05 CTTCATCGGG CAAGTTCG ATTTCAAACA chr3L:2157671-2157791 47 1.52e-05 CCTTCACGCA CAAGTTCG CGCTCGACGT chr2L:10544794-10544914 42 2.88e-05 CGAACGCATT CGAGTTCG AATTGAAACC chr2L:2888147-2888267 42 2.88e-05 TCTCTCAGTA CGAGTTCG AGTTGCATGC chrX:1675909-1676029 59 2.88e-05 aattcgagtt cgagttcg agttggagtG chr2R:7896590-7896710 53 2.88e-05 AGTTCGAGTT CGAGTTCG ATCCGAAACT chrX:3279297-3279417 91 2.88e-05 ATGTTGCGTT CGAGTTCG AAGCCAACTT chr3R:26553445-26553565 35 2.88e-05 CCTGTCGCGG CGAGTTCG CGTTGCGGGT chrX:10869184-10869304 35 2.88e-05 CTTCGCGGCT CGAGTTCG CTGGGATTGG chr3L:17269626-17269746 54 2.88e-05 CGAACAGGTT CGAGTTCG AGCTGAACAG chr3L:2879144-2879264 87 4.33e-05 CGAACAGGTT CATGTTCG CATCGAACCA chr2L:10544561-10544681 49 4.33e-05 CGAGCCAGCT CATGTTCG AATCGAACTT chrX:19420447-19420567 76 4.33e-05 CAACATGTTC CATGTTCG AGACAGAACG chr2L:5288860-5288980 23 4.33e-05 gcaactgcaa catgttcg atcgccaaca chr3R:10379529-10379649 28 4.33e-05 ATGCCCAATA CATGTTCG CACACAACAA chr2R:9351765-9351885 66 5.63e-05 TTGTTCGGGC CGTGTTCG CGGTCGTGTC chr2R:11838354-11838474 45 5.63e-05 tgtgagcgag cgtgtTCG CTTGGCGCGC chr3L:21706318-21706438 56 7.12e-05 GGCGGCTCTG CAAGTTGG GCTTTGGACC chr2R:15242517-15242637 84 7.12e-05 CAACATGTTG CAAGTTGG AATTGAAGAT chr3L:7643674-7643794 19 7.12e-05 GTTTGAGTTG CAAGTTGG AGGGGCCTTA chr2L:3294711-3294831 83 8.70e-05 TAGTTGCAAT CAAGTTTG ATCGCAATTC chr3R:4724572-4724692 106 8.70e-05 TTTGTACACA CAAGTTTG AAAAGTC chrX:14871167-14871287 95 8.70e-05 GGATGGCCAA CAAGTTTG AAGCTCTGAT chr2L:6705285-6705405 52 1.30e-04 AACTTCGCTG CGAGTTTG TGGGGCTGTG chr3R:14821304-14821424 17 1.30e-04 GGAACATACG TAAGTTCG GAGACAACCA chrX:1685258-1685378 96 1.30e-04 gATTGGTGTT CGAGTTTG AGTGTGTTAA chr3R:13374980-13375100 43 1.30e-04 AGGGAATTTA CGAGTTTG AGAGAAATTT chr3L:12868107-12868227 81 1.59e-04 TGGCTTCAAA CACGTTCG CAGCAAGTGC chr3L:10813428-10813548 78 1.59e-04 AAGTGGGCGG CATGTTGG CAAAGGCATT chr2L:2923109-2923229 95 1.59e-04 GCACAACACA CATGTTGG CTACCATACG chr2L:3265774-3265894 33 1.59e-04 AACCGTGCAA CACGTTCG CTGCAACATG chrX:19096318-19096438 73 1.59e-04 GATATTGGAA CATGTTGG CCGGCGAACA chr2R:10128239-10128359 32 1.88e-04 AGTCCGAGTC TGAGTTCG AGTCCTCATA chr2L:8466759-8466879 59 1.88e-04 GATTCTTTCT TGAGTTCG CCCCGTACGG chr3R:14843467-14843587 7 2.13e-04 GCCAGA CGCGTTCG ATTCGAATTG chr2L:3422950-3423070 82 2.13e-04 GTATAAGAGT CGCGTTCG AACTTCGAAC chr3R:18795137-18795257 87 2.13e-04 TTCTCCTCAG CGTGTTGG CTCGATCTTG chr3R:26871991-26872111 90 2.13e-04 TCGCCTCCAA CGTGTTGG CTCCCAACAT chr3R:30460338-30460458 68 2.56e-04 GTCCCCGATT CAGGTTCG GCTTGGAATC chrX:12777919-12778039 96 2.56e-04 TTCGAAGGTG CAGGTTCG ACCGCAACAC chr2L:9071352-9071472 65 2.56e-04 GTATCCTTGT TATGTTCG GAGGCTTGTT chr3R:10780316-10780436 55 2.56e-04 TGTGTGCGGT TATGTTCG CTCTACGGAG chr2R:7187119-7187239 103 2.56e-04 CACATCTGGG CAGGTTCG ATCAGTCTGA chr2L:20017214-20017334 96 2.56e-04 TGGTGAGCTT TATGTTCG CAGTTAGTTA chrX:13258195-13258315 110 2.56e-04 CTGCAATGGC CGTGTTTG TTA chrX:498573-498693 47 2.56e-04 CTTTGAGGTT CGTGTTTG ATTTACACCC chr3L:16401980-16402100 7 2.81e-04 CATCGA TGTGTTCG CCTTGATTAG chr2R:12229245-12229365 36 2.81e-04 GCAACCGCGT TGTGTTCG CTTCTTCGAC chrX:7242411-7242531 84 2.95e-04 CGCCCACTGA CCAGTTCG AGCCAGCTCG chr2L:13154452-13154572 29 2.95e-04 TGGCTAGCTC CCAGTTCG CCTCGAACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWGTTCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13789857-13789977 1.5e-05 61_[+3]_51 chrX:5679954-5680074 1.5e-05 81_[+3]_31 chr2R:22693740-22693860 1.5e-05 40_[+3]_72 chr2L:3231378-3231498 1.5e-05 48_[+3]_64 chr2L:274384-274504 1.5e-05 95_[+3]_17 chr2R:12236142-12236262 1.5e-05 55_[+3]_57 chr3L:2157671-2157791 1.5e-05 46_[+3]_66 chr2L:10544794-10544914 2.9e-05 41_[+3]_71 chr2L:2888147-2888267 2.9e-05 41_[+3]_71 chrX:1675909-1676029 2.9e-05 58_[+3]_54 chr2R:7896590-7896710 2.9e-05 52_[+3]_60 chrX:3279297-3279417 2.9e-05 90_[+3]_22 chr3R:26553445-26553565 2.9e-05 34_[+3]_78 chrX:10869184-10869304 2.9e-05 34_[+3]_78 chr3L:17269626-17269746 2.9e-05 53_[+3]_59 chr3L:2879144-2879264 4.3e-05 86_[+3]_26 chr2L:10544561-10544681 4.3e-05 48_[+3]_64 chrX:19420447-19420567 4.3e-05 75_[+3]_37 chr2L:5288860-5288980 4.3e-05 22_[+3]_90 chr3R:10379529-10379649 4.3e-05 27_[+3]_85 chr2R:9351765-9351885 5.6e-05 65_[+3]_47 chr2R:11838354-11838474 5.6e-05 44_[+3]_68 chr3L:21706318-21706438 7.1e-05 55_[+3]_57 chr2R:15242517-15242637 7.1e-05 83_[+3]_29 chr3L:7643674-7643794 7.1e-05 18_[+3]_94 chr2L:3294711-3294831 8.7e-05 82_[+3]_30 chr3R:4724572-4724692 8.7e-05 105_[+3]_7 chrX:14871167-14871287 8.7e-05 94_[+3]_18 chr2L:6705285-6705405 0.00013 51_[+3]_61 chr3R:14821304-14821424 0.00013 16_[+3]_96 chrX:1685258-1685378 0.00013 95_[+3]_17 chr3R:13374980-13375100 0.00013 42_[+3]_70 chr3L:12868107-12868227 0.00016 80_[+3]_32 chr3L:10813428-10813548 0.00016 77_[+3]_35 chr2L:2923109-2923229 0.00016 94_[+3]_18 chr2L:3265774-3265894 0.00016 32_[+3]_80 chrX:19096318-19096438 0.00016 72_[+3]_40 chr2R:10128239-10128359 0.00019 31_[+3]_81 chr2L:8466759-8466879 0.00019 58_[+3]_54 chr3R:14843467-14843587 0.00021 6_[+3]_106 chr2L:3422950-3423070 0.00021 81_[+3]_31 chr3R:18795137-18795257 0.00021 86_[+3]_26 chr3R:26871991-26872111 0.00021 89_[+3]_23 chr3R:30460338-30460458 0.00026 67_[+3]_45 chrX:12777919-12778039 0.00026 95_[+3]_17 chr2L:9071352-9071472 0.00026 64_[+3]_48 chr3R:10780316-10780436 0.00026 54_[+3]_58 chr2R:7187119-7187239 0.00026 102_[+3]_10 chr2L:20017214-20017334 0.00026 95_[+3]_17 chrX:13258195-13258315 0.00026 109_[+3]_3 chrX:498573-498693 0.00026 46_[+3]_66 chr3L:16401980-16402100 0.00028 6_[+3]_106 chr2R:12229245-12229365 0.00028 35_[+3]_77 chrX:7242411-7242531 0.0003 83_[+3]_29 chr2L:13154452-13154572 0.0003 28_[+3]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWGTTCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRWGTTCG width=8 seqs=55 chr3R:13789857-13789977 ( 62) CAAGTTCG 1 chrX:5679954-5680074 ( 82) CAAGTTCG 1 chr2R:22693740-22693860 ( 41) CAAGTTCG 1 chr2L:3231378-3231498 ( 49) CAAGTTCG 1 chr2L:274384-274504 ( 96) CAAGTTCG 1 chr2R:12236142-12236262 ( 56) CAAGTTCG 1 chr3L:2157671-2157791 ( 47) CAAGTTCG 1 chr2L:10544794-10544914 ( 42) CGAGTTCG 1 chr2L:2888147-2888267 ( 42) CGAGTTCG 1 chrX:1675909-1676029 ( 59) CGAGTTCG 1 chr2R:7896590-7896710 ( 53) CGAGTTCG 1 chrX:3279297-3279417 ( 91) CGAGTTCG 1 chr3R:26553445-26553565 ( 35) CGAGTTCG 1 chrX:10869184-10869304 ( 35) CGAGTTCG 1 chr3L:17269626-17269746 ( 54) CGAGTTCG 1 chr3L:2879144-2879264 ( 87) CATGTTCG 1 chr2L:10544561-10544681 ( 49) CATGTTCG 1 chrX:19420447-19420567 ( 76) CATGTTCG 1 chr2L:5288860-5288980 ( 23) CATGTTCG 1 chr3R:10379529-10379649 ( 28) CATGTTCG 1 chr2R:9351765-9351885 ( 66) CGTGTTCG 1 chr2R:11838354-11838474 ( 45) CGTGTTCG 1 chr3L:21706318-21706438 ( 56) CAAGTTGG 1 chr2R:15242517-15242637 ( 84) CAAGTTGG 1 chr3L:7643674-7643794 ( 19) CAAGTTGG 1 chr2L:3294711-3294831 ( 83) CAAGTTTG 1 chr3R:4724572-4724692 ( 106) CAAGTTTG 1 chrX:14871167-14871287 ( 95) CAAGTTTG 1 chr2L:6705285-6705405 ( 52) CGAGTTTG 1 chr3R:14821304-14821424 ( 17) TAAGTTCG 1 chrX:1685258-1685378 ( 96) CGAGTTTG 1 chr3R:13374980-13375100 ( 43) CGAGTTTG 1 chr3L:12868107-12868227 ( 81) CACGTTCG 1 chr3L:10813428-10813548 ( 78) CATGTTGG 1 chr2L:2923109-2923229 ( 95) CATGTTGG 1 chr2L:3265774-3265894 ( 33) CACGTTCG 1 chrX:19096318-19096438 ( 73) CATGTTGG 1 chr2R:10128239-10128359 ( 32) TGAGTTCG 1 chr2L:8466759-8466879 ( 59) TGAGTTCG 1 chr3R:14843467-14843587 ( 7) CGCGTTCG 1 chr2L:3422950-3423070 ( 82) CGCGTTCG 1 chr3R:18795137-18795257 ( 87) CGTGTTGG 1 chr3R:26871991-26872111 ( 90) CGTGTTGG 1 chr3R:30460338-30460458 ( 68) CAGGTTCG 1 chrX:12777919-12778039 ( 96) CAGGTTCG 1 chr2L:9071352-9071472 ( 65) TATGTTCG 1 chr3R:10780316-10780436 ( 55) TATGTTCG 1 chr2R:7187119-7187239 ( 103) CAGGTTCG 1 chr2L:20017214-20017334 ( 96) TATGTTCG 1 chrX:13258195-13258315 ( 110) CGTGTTTG 1 chrX:498573-498693 ( 47) CGTGTTTG 1 chr3L:16401980-16402100 ( 7) TGTGTTCG 1 chr2R:12229245-12229365 ( 36) TGTGTTCG 1 chrX:7242411-7242531 ( 84) CCAGTTCG 1 chr2L:13154452-13154572 ( 29) CCAGTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWGTTCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6641 E= 2.3e-006 -1243 182 -1243 -80 104 -274 81 -1243 99 -174 -213 44 -1243 -1243 207 -1243 -1243 -1243 -1243 198 -1243 -1243 -1243 198 -1243 155 -71 -80 -1243 -1243 207 -1243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWGTTCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 2.3e-006 0.000000 0.854545 0.000000 0.145455 0.545455 0.036364 0.418182 0.000000 0.527273 0.072727 0.054545 0.345455 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.709091 0.145455 0.145455 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRWGTTCG MEME-3 regular expression -------------------------------------------------------------------------------- C[AG][AT]GTTCG -------------------------------------------------------------------------------- Time 19.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCTGTTG MEME-4 width = 8 sites = 38 llr = 333 E-value = 9.8e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGTTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C ::6::2:: probability G :a2:a:2a matrix T a:28:88: bits 2.1 ** * * 1.9 ** * * 1.7 ** * * 1.4 ** * ** Relative 1.2 ** ***** Entropy 1.0 ** ***** (12.7 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCTGTTG consensus GA C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGTTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20005172-20005292 7 1.36e-05 CGAAGT TGCTGTTG GAGGTTGCAG chr2L:21886877-21886997 20 1.36e-05 TGAATCTTGT TGCTGTTG CACGTTGTTA chrX:12731170-12731290 19 1.36e-05 ttgttgttgt tgctgttg ctggttgctg chr2L:12539239-12539359 97 1.36e-05 Atgttgctga tgctgttg cgatgctgtt chr2R:9369298-9369418 3 1.36e-05 GG TGCTGTTG TTTGTTACTG chr2L:5406479-5406599 47 1.36e-05 TCGTTGGCAT TGCTGTTG CGACTCGTCA chr2L:531595-531715 79 1.36e-05 cagtcgctgt tgctgttg ctgttgctAC chr3R:5045556-5045676 7 1.36e-05 ttttgt tgctgttg cttttTATGC chr2L:9019561-9019681 89 1.36e-05 CCTCGGCAAA TGCTGTTG GAACTGCCGG chrX:3884043-3884163 51 1.36e-05 AAAAGAAAGC TGCTGTTG TTGGCTCGAT chr3L:1869241-1869361 54 2.70e-05 TTAATTATAT TGGTGTTG TGCGCCTCTT chrX:7549235-7549355 22 2.70e-05 ACCTCGAACT TGGTGTTG CCGCCGTTGC chrX:1675909-1676029 21 2.70e-05 TGTGGCGGTC TGGTGTTG Ggagttcaaa chr3L:17254351-17254471 37 2.70e-05 TGAGCTTTAT TGGTGTTG TCTGTAAAGG chr2R:11493910-11494030 61 4.12e-05 GATGTGTTCT TGTTGTTG CCTTCGAACT chr2R:11755807-11755927 90 4.12e-05 AACTCAAACC TGTTGTTG TTTCTTTAAT chr2R:18635005-18635125 41 4.12e-05 ttggtttggt tgttgttg ggACAGTCGT chr3R:26553445-26553565 7 4.12e-05 CCGTCA TGTTGTTG CGCTGGCTGG chr3L:7848051-7848171 106 5.43e-05 cttcggcttc tgctgctg ctTCCTG chr2R:10190545-10190665 51 5.43e-05 tttctgtttc tgctgctg ctactggttG chr2L:13777426-13777546 112 5.43e-05 CGGCTCctgc tgctgctg c chr2R:19067097-19067217 31 5.43e-05 GCAGGACGCT TGCTGCTG ATAAAAAGTT chr2R:7186911-7187031 67 6.85e-05 AGTTCGATGT TGCAGTTG CGGATTGAGT chr2L:5050077-5050197 85 6.85e-05 TGTGTCTGGT TGCAGTTG GAACCCATTG chr3L:17389521-17389641 109 6.85e-05 CAGGCCTAAA tgcagttg gagt chrX:4517561-4517681 27 8.13e-05 CGAGGGGCGG TGCTGTGG CAACCGTGGC chr3R:5502750-5502870 26 8.13e-05 GCTTCCGCTG TGCTGTGG ATTTGGCAGC chr2L:13154452-13154572 77 8.13e-05 TGATCTTCGC TGCTGTGG AGCAGAGCAA chr3R:9249164-9249284 105 9.41e-05 TTTTCGGTGC TGGTGCTG CTTTTAGA chr2R:19836022-19836142 99 1.22e-04 GTGGTGGAAG TGGAGTTG CAGCGAGGAA chr2L:9071352-9071472 27 1.22e-04 CATTGGTAGT TGTTGCTG CCGGTTGCTG chrX:6309059-6309179 89 1.37e-04 AACTTGCGAC TGTAGTTG TTGGCCGGGT chrX:498573-498693 109 1.37e-04 AGTTTGTCGT TGTAGTTG ATGG chrX:13249596-13249716 18 1.63e-04 GCTCTAAAGT TGCAGCTG GGTTTTACAG chr3R:15150244-15150364 45 1.63e-04 ATATGTGTAT TGGTGTGG CTGTGTTTGG chr2L:8475653-8475773 87 1.63e-04 TTGCATGGCT TGGTGTGG CGTCCCTGGA chr3L:437746-437866 46 1.63e-04 TGAACTTCAG TGCAGCTG CAACAGAGCT chr3R:5782941-5783061 50 1.76e-04 GTGGTCGGTT TGTTGTGG ACGCGTCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGTTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20005172-20005292 1.4e-05 6_[+4]_106 chr2L:21886877-21886997 1.4e-05 19_[+4]_93 chrX:12731170-12731290 1.4e-05 18_[+4]_94 chr2L:12539239-12539359 1.4e-05 96_[+4]_16 chr2R:9369298-9369418 1.4e-05 2_[+4]_110 chr2L:5406479-5406599 1.4e-05 46_[+4]_66 chr2L:531595-531715 1.4e-05 78_[+4]_34 chr3R:5045556-5045676 1.4e-05 6_[+4]_106 chr2L:9019561-9019681 1.4e-05 88_[+4]_24 chrX:3884043-3884163 1.4e-05 50_[+4]_62 chr3L:1869241-1869361 2.7e-05 53_[+4]_59 chrX:7549235-7549355 2.7e-05 21_[+4]_91 chrX:1675909-1676029 2.7e-05 20_[+4]_92 chr3L:17254351-17254471 2.7e-05 36_[+4]_76 chr2R:11493910-11494030 4.1e-05 60_[+4]_52 chr2R:11755807-11755927 4.1e-05 89_[+4]_23 chr2R:18635005-18635125 4.1e-05 40_[+4]_72 chr3R:26553445-26553565 4.1e-05 6_[+4]_106 chr3L:7848051-7848171 5.4e-05 105_[+4]_7 chr2R:10190545-10190665 5.4e-05 50_[+4]_62 chr2L:13777426-13777546 5.4e-05 111_[+4]_1 chr2R:19067097-19067217 5.4e-05 30_[+4]_82 chr2R:7186911-7187031 6.9e-05 66_[+4]_46 chr2L:5050077-5050197 6.9e-05 84_[+4]_28 chr3L:17389521-17389641 6.9e-05 108_[+4]_4 chrX:4517561-4517681 8.1e-05 26_[+4]_86 chr3R:5502750-5502870 8.1e-05 25_[+4]_87 chr2L:13154452-13154572 8.1e-05 76_[+4]_36 chr3R:9249164-9249284 9.4e-05 104_[+4]_8 chr2R:19836022-19836142 0.00012 98_[+4]_14 chr2L:9071352-9071472 0.00012 26_[+4]_86 chrX:6309059-6309179 0.00014 88_[+4]_24 chrX:498573-498693 0.00014 108_[+4]_4 chrX:13249596-13249716 0.00016 17_[+4]_95 chr3R:15150244-15150364 0.00016 44_[+4]_68 chr2L:8475653-8475773 0.00016 86_[+4]_26 chr3L:437746-437866 0.00016 45_[+4]_67 chr3R:5782941-5783061 0.00018 49_[+4]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGTTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGTTG width=8 seqs=38 chr3L:20005172-20005292 ( 7) TGCTGTTG 1 chr2L:21886877-21886997 ( 20) TGCTGTTG 1 chrX:12731170-12731290 ( 19) TGCTGTTG 1 chr2L:12539239-12539359 ( 97) TGCTGTTG 1 chr2R:9369298-9369418 ( 3) TGCTGTTG 1 chr2L:5406479-5406599 ( 47) TGCTGTTG 1 chr2L:531595-531715 ( 79) TGCTGTTG 1 chr3R:5045556-5045676 ( 7) TGCTGTTG 1 chr2L:9019561-9019681 ( 89) TGCTGTTG 1 chrX:3884043-3884163 ( 51) TGCTGTTG 1 chr3L:1869241-1869361 ( 54) TGGTGTTG 1 chrX:7549235-7549355 ( 22) TGGTGTTG 1 chrX:1675909-1676029 ( 21) TGGTGTTG 1 chr3L:17254351-17254471 ( 37) TGGTGTTG 1 chr2R:11493910-11494030 ( 61) TGTTGTTG 1 chr2R:11755807-11755927 ( 90) TGTTGTTG 1 chr2R:18635005-18635125 ( 41) TGTTGTTG 1 chr3R:26553445-26553565 ( 7) TGTTGTTG 1 chr3L:7848051-7848171 ( 106) TGCTGCTG 1 chr2R:10190545-10190665 ( 51) TGCTGCTG 1 chr2L:13777426-13777546 ( 112) TGCTGCTG 1 chr2R:19067097-19067217 ( 31) TGCTGCTG 1 chr2R:7186911-7187031 ( 67) TGCAGTTG 1 chr2L:5050077-5050197 ( 85) TGCAGTTG 1 chr3L:17389521-17389641 ( 109) TGCAGTTG 1 chrX:4517561-4517681 ( 27) TGCTGTGG 1 chr3R:5502750-5502870 ( 26) TGCTGTGG 1 chr2L:13154452-13154572 ( 77) TGCTGTGG 1 chr3R:9249164-9249284 ( 105) TGGTGCTG 1 chr2R:19836022-19836142 ( 99) TGGAGTTG 1 chr2L:9071352-9071472 ( 27) TGTTGCTG 1 chrX:6309059-6309179 ( 89) TGTAGTTG 1 chrX:498573-498693 ( 109) TGTAGTTG 1 chrX:13249596-13249716 ( 18) TGCAGCTG 1 chr3R:15150244-15150364 ( 45) TGGTGTGG 1 chr2L:8475653-8475773 ( 87) TGGTGTGG 1 chr3L:437746-437866 ( 46) TGCAGCTG 1 chr3R:5782941-5783061 ( 50) TGTTGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGTTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 9.8e-006 -1189 -1189 -1189 198 -1189 -1189 207 -1189 -1189 125 -18 -27 -33 -1189 -1189 164 -1189 -1189 207 -1189 -1189 -20 -1189 164 -1189 -1189 -59 173 -1189 -1189 207 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGTTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 9.8e-006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.578947 0.210526 0.210526 0.210526 0.000000 0.000000 0.789474 0.000000 0.000000 1.000000 0.000000 0.000000 0.210526 0.000000 0.789474 0.000000 0.000000 0.157895 0.842105 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGTTG MEME-4 regular expression -------------------------------------------------------------------------------- TG[CGT][TA]G[TC]TG -------------------------------------------------------------------------------- Time 25.42 secs. ******************************************************************************** ******************************************************************************** MOTIF KTTGGCCA MEME-5 width = 8 sites = 13 llr = 136 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTGGCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :::::aa: probability G 5::aa::: matrix T 5aa::::: bits 2.1 ****** 1.9 ******* 1.7 ******* 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTGGCCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3079209-3079329 92 1.36e-05 AAACTTGTCT GTTGGCCA ACGAAAAAAA chr3R:26195072-26195192 48 1.36e-05 TGTGCAGGAA GTTGGCCA GGCCAAGAGG chrX:6779943-6780063 1 1.36e-05 . GTTGGCCA TAGTTTATTT chr2L:3442597-3442717 30 1.36e-05 ATATCATGAT GTTGGCCA CCAGTCCGTA chr2R:16732086-16732206 104 1.36e-05 TGCACTTGTC GTTGGCCA TCTTCAAAT chr3R:27596148-27596268 71 1.36e-05 TAGCTCCCCA GTTGGCCA AGACGGCTCC chr3L:16545650-16545770 91 1.36e-05 ACGAAACGCC GTTGGCCA AGTTAAGACG chr3L:20562522-20562642 90 2.81e-05 ATCCATCGTT TTTGGCCA TTTTCATTCA chr3R:9249164-9249284 50 2.81e-05 CGACAACCCG TTTGGCCA TCGAGCATGT chr3L:1370477-1370597 72 2.81e-05 CCTTTCGGTT TTTGGCCA GGCCGGCACT chr2L:8475653-8475773 35 2.81e-05 CAGCGTCTCA TTTGGCCA AGCAACTCAT chr2R:12229245-12229365 68 2.81e-05 GCTCAACTGT TTTGGCCA ACGGTTTGAG chrX:3279297-3279417 107 2.81e-05 CGAAGCCAAC TTTGGCCA TTCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3079209-3079329 1.4e-05 91_[+5]_21 chr3R:26195072-26195192 1.4e-05 47_[+5]_65 chrX:6779943-6780063 1.4e-05 [+5]_112 chr2L:3442597-3442717 1.4e-05 29_[+5]_83 chr2R:16732086-16732206 1.4e-05 103_[+5]_9 chr3R:27596148-27596268 1.4e-05 70_[+5]_42 chr3L:16545650-16545770 1.4e-05 90_[+5]_22 chr3L:20562522-20562642 2.8e-05 89_[+5]_23 chr3R:9249164-9249284 2.8e-05 49_[+5]_63 chr3L:1370477-1370597 2.8e-05 71_[+5]_41 chr2L:8475653-8475773 2.8e-05 34_[+5]_78 chr2R:12229245-12229365 2.8e-05 67_[+5]_45 chrX:3279297-3279417 2.8e-05 106_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTGGCCA width=8 seqs=13 chr3L:3079209-3079329 ( 92) GTTGGCCA 1 chr3R:26195072-26195192 ( 48) GTTGGCCA 1 chrX:6779943-6780063 ( 1) GTTGGCCA 1 chr2L:3442597-3442717 ( 30) GTTGGCCA 1 chr2R:16732086-16732206 ( 104) GTTGGCCA 1 chr3R:27596148-27596268 ( 71) GTTGGCCA 1 chr3L:16545650-16545770 ( 91) GTTGGCCA 1 chr3L:20562522-20562642 ( 90) TTTGGCCA 1 chr3R:9249164-9249284 ( 50) TTTGGCCA 1 chr3L:1370477-1370597 ( 72) TTTGGCCA 1 chr2L:8475653-8475773 ( 35) TTTGGCCA 1 chr2R:12229245-12229365 ( 68) TTTGGCCA 1 chrX:3279297-3279417 ( 107) TTTGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 1.3e+002 -1035 -1035 118 86 -1035 -1035 -1035 198 -1035 -1035 -1035 198 -1035 -1035 207 -1035 -1035 -1035 207 -1035 -1035 204 -1035 -1035 -1035 204 -1035 -1035 191 -1035 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.3e+002 0.000000 0.000000 0.538462 0.461538 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGGCCA MEME-5 regular expression -------------------------------------------------------------------------------- [GT]TTGGCCA -------------------------------------------------------------------------------- Time 31.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17269626-17269746 3.35e-04 45_[+1(6.79e-05)]_[+3(2.88e-05)]_59 chr2R:22667681-22667801 3.41e-02 50_[+2(3.37e-05)]_62 chrX:3027796-3027916 9.75e-04 65_[+2(1.61e-05)]_7_[+1(1.76e-05)]_\ 32 chrX:14871167-14871287 8.94e-06 71_[+2(1.61e-05)]_13_[+1(8.63e-05)]_\ 20 chr3R:13374980-13375100 1.20e-02 13_[+1(1.76e-05)]_99 chr3L:16545650-16545770 2.95e-04 44_[+2(3.37e-05)]_2_[+2(3.37e-05)]_\ 28_[+5(1.36e-05)]_22 chr3L:437746-437866 1.86e-03 2_[+1(3.45e-05)]_110 chrX:10869184-10869304 1.67e-02 34_[+3(2.88e-05)]_78 chr3R:10379529-10379649 4.02e-04 27_[+3(4.33e-05)]_38_[+1(1.76e-05)]_\ 39 chr2R:13308334-13308454 5.73e-05 36_[+1(1.76e-05)]_1_[+2(6.60e-05)]_\ 67 chrX:19096318-19096438 1.13e-05 70_[+1(1.76e-05)]_8_[+1(1.76e-05)]_\ 16_[+2(3.37e-05)]_2 chr3R:26553445-26553565 1.53e-03 6_[+4(4.12e-05)]_20_[+3(2.88e-05)]_\ 78 chr2L:3265774-3265894 2.24e-03 30_[+1(5.14e-05)]_6_[+1(1.76e-05)]_\ 68 chr3L:22638274-22638394 1.42e-02 67_[+1(1.76e-05)]_45 chr3R:4724572-4724692 2.87e-03 105_[+3(8.70e-05)]_7 chr2L:3199695-3199815 6.60e-02 120 chr2L:12114298-12114418 6.05e-04 42_[+1(3.45e-05)]_70 chr3L:11678452-11678572 6.27e-01 120 chr2L:10474954-10475074 3.65e-02 120 chr2L:13154452-13154572 3.09e-06 41_[+1(1.76e-05)]_27_[+4(8.13e-05)]_\ 36 chr3L:6610341-6610461 2.32e-03 100_[+1(1.76e-05)]_12 chr3R:23009605-23009725 6.99e-03 120 chr3L:17255978-17256098 1.03e-01 65_[+2(6.60e-05)]_47 chr2R:22563934-22564054 3.92e-01 120 chr4:590392-590512 2.80e-02 10_[+2(3.37e-05)]_102 chr2R:6891557-6891677 2.21e-01 120 chr2L:5288860-5288980 6.29e-04 20_[+1(1.76e-05)]_23_[+1(1.76e-05)]_\ 19_[+1(3.45e-05)]_34 chrX:1686480-1686600 1.43e-01 120 chr3R:26871991-26872111 9.65e-05 102_[+1(1.76e-05)]_10 chrX:3279297-3279417 2.21e-04 90_[+3(2.88e-05)]_8_[+5(2.81e-05)]_\ 6 chr2L:11928585-11928705 6.33e-03 59_[+1(3.45e-05)]_53 chr2R:21585689-21585809 8.58e-04 25_[+2(1.61e-05)]_87 chr3R:27596148-27596268 6.29e-06 70_[+5(1.36e-05)]_24_[+1(1.76e-05)]_\ 10 chr3L:17254351-17254471 1.85e-04 4_[+1(3.45e-05)]_24_[+4(2.70e-05)]_\ 76 chr2L:20017941-20018061 5.84e-03 79_[+2(3.37e-05)]_18_[+2(3.37e-05)]_\ 7 chr3L:2157671-2157791 5.09e-04 46_[+3(1.52e-05)]_27_[+1(1.76e-05)]_\ 31 chrX:3884043-3884163 3.76e-05 25_[+1(5.14e-05)]_17_[+4(1.36e-05)]_\ 62 chrX:1163154-1163274 2.28e-01 120 chr2L:11942433-11942553 1.30e-05 43_[+1(1.76e-05)]_69 chr2R:19067097-19067217 9.34e-03 30_[+4(5.43e-05)]_82 chr2L:7591063-7591183 6.37e-04 43_[+1(1.76e-05)]_28_[+1(1.76e-05)]_\ 33 chr3L:7643674-7643794 3.27e-02 18_[+3(7.12e-05)]_94 chr3R:15825611-15825731 5.29e-01 120 chr2R:16732086-16732206 9.43e-07 16_[+2(1.61e-05)]_60_[+5(1.36e-05)]_\ 11_[+5(1.36e-05)]_9 chr2L:18009837-18009957 1.05e-01 120 chr2L:6075998-6076118 5.35e-01 120 chr2L:9019561-9019681 4.58e-05 22_[+1(1.76e-05)]_58_[+4(1.36e-05)]_\ 24 chr2R:16552855-16552975 2.95e-04 49_[+1(1.76e-05)]_63 chr3L:17389521-17389641 1.51e-02 108_[+4(6.85e-05)]_4 chr3R:15474265-15474385 1.27e-03 18_[+1(5.14e-05)]_94 chr3L:4096717-4096837 4.08e-02 57_[+2(1.61e-05)]_55 chr2L:13777426-13777546 5.13e-03 108_[+4(5.43e-05)]_4 chrX:10839126-10839246 1.07e-03 93_[+2(1.61e-05)]_19 chr3L:248498-248618 4.89e-02 120 chr3R:18547095-18547215 1.74e-03 69_[+1(1.76e-05)]_43 chr2L:3441297-3441417 4.39e-03 68_[+1(3.45e-05)]_44 chr2L:8466759-8466879 2.53e-01 120 chr2R:12236142-12236262 6.45e-04 55_[+3(1.52e-05)]_6_[+1(1.76e-05)]_\ 43 chr2R:9493461-9493581 1.00e-03 42_[+2(1.61e-05)]_21_[+1(3.45e-05)]_\ 2_[+2(1.61e-05)]_31 chrX:19837431-19837551 7.36e-01 120 chrX:498573-498693 1.05e-02 120 chr2L:9124587-9124707 2.70e-01 120 chr2L:274384-274504 6.49e-02 95_[+3(1.52e-05)]_17 chr2L:10711360-10711480 9.02e-02 120 chr2R:12236341-12236461 8.82e-01 120 chr3L:20388271-20388391 7.96e-04 22_[+1(3.45e-05)]_34_[+1(1.76e-05)]_\ 48 chrX:909116-909236 1.17e-01 120 chr2R:7896590-7896710 7.41e-02 46_[+3(2.88e-05)]_66 chr3R:20288353-20288473 7.44e-01 120 chr2L:18590226-18590346 7.45e-03 120 chr2L:3442597-3442717 2.60e-05 29_[+5(1.36e-05)]_83 chr2L:3231378-3231498 4.55e-05 48_[+3(1.52e-05)]_18_[+1(1.76e-05)]_\ 38 chrX:19420447-19420567 2.42e-03 66_[+1(1.76e-05)]_1_[+3(4.33e-05)]_\ 37 chr2L:2923109-2923229 4.02e-04 60_[+1(5.14e-05)]_52 chr2R:22693740-22693860 1.44e-02 40_[+3(1.52e-05)]_72 chr3L:4383845-4383965 6.56e-03 9_[+2(1.61e-05)]_103 chr2L:12119921-12120041 2.72e-04 33_[+1(1.76e-05)]_79 chrX:3738966-3739086 3.56e-02 120 chrX:18666027-18666147 7.21e-02 120 chrX:6779943-6780063 2.66e-02 [+5(1.36e-05)]_112 chr2R:11838354-11838474 5.92e-02 44_[+3(5.63e-05)]_68 chr3L:16452004-16452124 1.71e-03 79_[+1(1.76e-05)]_33 chr3R:5045556-5045676 3.26e-03 6_[+4(1.36e-05)]_106 chr2R:18635005-18635125 9.71e-05 40_[+4(4.12e-05)]_21_[+1(5.14e-05)]_\ 43 chr2R:12229245-12229365 2.40e-03 67_[+5(2.81e-05)]_45 chr2R:15052558-15052678 7.39e-01 120 chr3L:12351560-12351680 5.04e-03 53_[+1(1.76e-05)]_59 chrX:13258195-13258315 1.89e-03 23_[+2(1.61e-05)]_6_[+2(1.61e-05)]_\ 75 chr2L:20017214-20017334 2.70e-03 120 chr2L:3441496-3441616 9.41e-01 120 chrX:6309059-6309179 2.30e-05 8_[+1(1.76e-05)]_104 chr2R:8797512-8797632 1.68e-02 59_[+2(1.61e-05)]_53 chrX:1685258-1685378 2.11e-01 120 chr3R:5502750-5502870 1.34e-03 25_[+4(8.13e-05)]_87 chrX:1675909-1676029 8.09e-03 20_[+4(2.70e-05)]_24_[+3(2.88e-05)]_\ 60 chr3R:8963333-8963453 4.53e-01 120 chr2L:531595-531715 1.23e-02 30_[+4(2.70e-05)]_4_[+4(6.85e-05)]_\ 4_[+4(6.85e-05)]_16_[+4(1.36e-05)]_24_[+4(5.43e-05)]_2 chr2L:7078960-7079080 5.71e-04 20_[+1(1.76e-05)]_92 chr2L:10544561-10544681 4.49e-03 48_[+3(4.33e-05)]_[+2(3.37e-05)]_56 chr3L:18743206-18743326 5.60e-02 120 chr3L:2159961-2160081 2.02e-01 120 chr2R:9351765-9351885 5.27e-03 65_[+3(5.63e-05)]_25_[+1(1.76e-05)]_\ 14 chrX:4927217-4927337 1.33e-02 12_[+1(3.45e-05)]_100 chr2L:18012288-18012408 4.94e-01 120 chr3L:2879387-2879507 1.38e-01 120 chr3R:22577107-22577227 1.89e-01 120 chrX:16175182-16175302 2.41e-02 27_[+2(1.61e-05)]_85 chr3L:10813428-10813548 7.19e-02 120 chrX:3887763-3887883 6.29e-04 61_[+1(3.45e-05)]_51 chrX:15480301-15480421 5.52e-01 120 chr3R:17954431-17954551 7.50e-02 49_[+2(6.60e-05)]_63 chr3R:26195072-26195192 3.55e-04 20_[+2(6.60e-05)]_19_[+5(1.36e-05)]_\ 65 chr2R:11755807-11755927 4.66e-04 46_[+1(1.76e-05)]_35_[+4(4.12e-05)]_\ 23 chr2R:20596895-20597015 2.28e-01 14_[+2(3.37e-05)]_98 chr2L:8475653-8475773 1.07e-04 34_[+5(2.81e-05)]_28_[+1(1.76e-05)]_\ 30_[+5(5.72e-05)]_4 chr2R:9494120-9494240 8.59e-01 120 chr2R:24547637-24547757 5.91e-01 120 chr2L:21770349-21770469 2.50e-02 68_[+1(5.14e-05)]_8_[+1(5.14e-05)]_\ 28 chr3R:24150229-24150349 5.53e-02 91_[+1(3.45e-05)]_21 chr3R:14297659-14297779 4.77e-03 48_[+1(6.79e-05)]_64 chr3L:18539971-18540091 2.52e-03 87_[+1(5.14e-05)]_25 chrX:811563-811683 4.94e-02 120 chr3L:1370477-1370597 1.12e-01 71_[+5(2.81e-05)]_41 chr3L:1370252-1370372 5.10e-05 72_[+1(1.76e-05)]_40 chr2R:15242517-15242637 5.19e-03 74_[+1(1.76e-05)]_1_[+3(7.12e-05)]_\ 29 chr2R:11493910-11494030 2.17e-04 60_[+4(4.12e-05)]_6_[+1(3.45e-05)]_\ 38 chr2R:18635254-18635374 6.28e-01 120 chr2R:20597103-20597223 4.54e-01 120 chr3R:32026622-32026742 1.07e-02 67_[+1(1.76e-05)]_45 chr2R:24551254-24551374 3.24e-02 120 chr2R:11325591-11325711 3.85e-02 120 chr2L:5406479-5406599 3.78e-04 46_[+4(1.36e-05)]_22_[+1(1.76e-05)]_\ 36 chrX:5680157-5680277 8.65e-01 120 chrX:15125658-15125778 6.26e-02 120 chr2R:7187119-7187239 1.23e-02 48_[+2(1.61e-05)]_64 chrX:18926069-18926189 1.72e-01 120 chr3L:16401980-16402100 1.23e-02 89_[+2(3.37e-05)]_23 chr3R:12128446-12128566 2.25e-01 120 chr2R:9369298-9369418 1.53e-03 2_[+4(1.36e-05)]_110 chrX:9501051-9501171 1.78e-03 110_[+1(6.79e-05)]_2 chrX:5679954-5680074 3.09e-05 60_[+1(1.76e-05)]_13_[+3(1.52e-05)]_\ 31 chr2R:24547839-24547959 3.08e-02 120 chr3R:10780316-10780436 4.85e-02 120 chrX:5118447-5118567 2.23e-01 120 chr3L:2879144-2879264 1.06e-04 59_[+3(1.52e-05)]_11_[+1(6.79e-05)]_\ [+3(4.33e-05)]_[+2(1.61e-05)]_18 chr2L:12120126-12120246 9.47e-01 120 chr3R:14821304-14821424 3.05e-03 120 chr2R:21572258-21572378 9.57e-01 120 chrX:3025956-3026076 1.74e-02 120 chr2L:10748213-10748333 3.30e-01 120 chr2R:10190545-10190665 4.95e-02 50_[+4(5.43e-05)]_62 chrX:9119041-9119161 1.37e-02 120 chr3L:20193537-20193657 5.29e-03 120 chr2R:21255754-21255874 2.90e-01 120 chr3L:12868107-12868227 2.05e-03 17_[+1(1.76e-05)]_21_[+1(8.63e-05)]_\ 24_[+1(5.14e-05)]_34 chr2L:19917907-19918027 2.07e-02 120 chr3R:18795137-18795257 5.03e-02 120 chr3L:248281-248401 6.11e-02 120 chr2R:17127952-17128072 1.29e-03 33_[+2(1.61e-05)]_7_[+1(1.76e-05)]_\ 64 chr2L:3294711-3294831 1.37e-03 53_[+1(1.76e-05)]_21_[+3(8.70e-05)]_\ 30 chr2R:20164701-20164821 8.73e-04 34_[+1(1.76e-05)]_78 chr2R:11494740-11494860 1.92e-02 46_[+1(1.76e-05)]_66 chr3R:15150244-15150364 4.03e-02 120 chr3L:7848051-7848171 3.79e-02 105_[+4(5.43e-05)]_7 chr2L:9071352-9071472 7.24e-02 120 chr2L:11027993-11028113 2.16e-02 120 chr2L:13266832-13266952 2.99e-01 120 chr3R:9249164-9249284 8.49e-06 49_[+5(2.81e-05)]_5_[+3(4.33e-05)]_\ 34_[+4(9.41e-05)]_8 chr3L:5523134-5523254 2.19e-02 101_[+1(8.63e-05)]_11 chr2R:7451439-7451559 6.70e-01 120 chr3L:14064105-14064225 2.31e-02 120 chr3R:21719582-21719702 2.84e-01 120 chr3L:19331880-19332000 4.76e-01 120 chr3L:21706550-21706670 8.88e-01 120 chr3L:19331056-19331176 2.58e-02 41_[+2(1.61e-05)]_71 chr3L:589731-589851 4.84e-01 120 chr3R:16495006-16495126 3.01e-01 120 chrX:12777919-12778039 1.48e-02 120 chr2L:5050077-5050197 1.11e-02 84_[+4(6.85e-05)]_28 chr2L:20399362-20399482 8.91e-07 73_[+2(1.61e-05)]_4_[+4(2.70e-05)]_\ 17_[+2(1.61e-05)]_2 chr2R:10128239-10128359 6.49e-02 120 chr3L:18540186-18540306 4.11e-01 120 chrX:18668451-18668571 4.39e-01 120 chr2L:2888147-2888267 2.67e-02 41_[+3(2.88e-05)]_71 chr3R:16502716-16502836 1.29e-01 120 chr2L:19438804-19438924 3.77e-02 120 chrX:18693152-18693272 5.96e-01 120 chr2L:2891339-2891459 9.34e-01 120 chr2L:5781271-5781391 9.33e-02 120 chr2R:11789987-11790107 2.23e-03 8_[+1(6.79e-05)]_104 chr2L:3422950-3423070 8.29e-03 120 chr2L:11219032-11219152 5.80e-01 120 chr3L:14754817-14754937 9.74e-03 3_[+2(6.60e-05)]_109 chr2L:12539239-12539359 1.49e-05 83_[+1(1.76e-05)]_5_[+4(1.36e-05)]_\ 3_[+4(1.36e-05)]_5 chr2R:24543938-24544058 4.25e-02 96_[+2(3.37e-05)]_16 chr3L:33527-33647 9.30e-01 120 chrX:12731170-12731290 2.07e-03 9_[+4(4.12e-05)]_1_[+4(1.36e-05)]_5_\ [+4(5.43e-05)]_5_[+1(5.14e-05)]_14_[+4(5.43e-05)]_7_[+4(2.70e-05)]_7_\ [+4(1.36e-05)]_16 chr3R:29829395-29829515 1.12e-04 79_[+1(1.76e-05)]_33 chr2L:20400987-20401107 8.92e-01 120 chr3L:3079209-3079329 1.01e-04 91_[+5(1.36e-05)]_21 chr3R:8529122-8529242 7.01e-03 2_[+2(1.61e-05)]_110 chrX:12745284-12745404 9.28e-01 120 chr3R:18548589-18548709 2.58e-03 33_[+1(1.76e-05)]_79 chr2R:19836022-19836142 3.82e-03 120 chr2R:21234796-21234916 2.17e-02 120 chr2R:5893814-5893934 7.49e-03 39_[+1(1.76e-05)]_73 chr3R:12477720-12477840 1.15e-01 120 chrX:7549235-7549355 2.68e-05 21_[+4(2.70e-05)]_24_[+1(1.76e-05)]_\ 59 chrX:12716932-12717052 1.24e-01 120 chr3R:16495205-16495325 6.82e-02 120 chrX:13249596-13249716 7.34e-02 120 chr2L:6705285-6705405 2.33e-02 120 chr2R:7186911-7187031 1.43e-04 54_[+3(1.52e-05)]_4_[+4(6.85e-05)]_\ 46 chr3L:1869241-1869361 2.01e-03 53_[+4(2.70e-05)]_59 chr3L:2163821-2163941 8.92e-02 120 chr3R:14843467-14843587 9.40e-02 120 chr2L:21886877-21886997 4.47e-04 19_[+4(1.36e-05)]_93 chrX:2973797-2973917 2.46e-04 104_[+1(1.76e-05)]_8 chr2L:8466959-8467079 1.69e-01 120 chr3L:12457082-12457202 2.67e-01 120 chr3L:12590798-12590918 4.95e-01 120 chr3R:30460338-30460458 2.49e-01 120 chrX:19399639-19399759 3.76e-01 120 chr3R:22869190-22869310 3.57e-02 60_[+1(1.76e-05)]_52 chr3R:5782941-5783061 1.06e-01 120 chr2L:10544794-10544914 5.79e-03 41_[+3(2.88e-05)]_71 chr3L:5523342-5523462 5.95e-01 120 chr3L:22642141-22642261 5.99e-01 120 chr3L:4384074-4384194 3.95e-01 120 chr2L:3293857-3293977 6.46e-02 120 chrX:9745000-9745120 1.46e-01 5_[+2(6.60e-05)]_8_[+2(6.60e-05)]_\ [+2(6.60e-05)]_12_[+2(6.60e-05)]_12_[+2(3.37e-05)]_43 chr3L:21706318-21706438 6.75e-03 55_[+3(7.12e-05)]_57 chrX:498773-498893 6.48e-01 120 chr3L:136750-136870 4.56e-01 120 chr2R:21579824-21579944 5.69e-03 53_[+1(1.76e-05)]_59 chr3L:19521004-19521124 1.63e-01 120 chrX:9136908-9137028 1.16e-01 120 chr2R:7098434-7098554 6.34e-01 120 chr3R:19006675-19006795 5.27e-01 120 chr3L:20005172-20005292 3.04e-03 6_[+4(1.36e-05)]_106 chr3R:14766560-14766680 1.96e-04 29_[+3(1.52e-05)]_83 chrX:4517561-4517681 2.25e-01 26_[+4(8.13e-05)]_86 chrX:13236961-13237081 9.69e-03 120 chr3L:20562522-20562642 1.55e-03 89_[+5(2.81e-05)]_23 chrX:11917197-11917317 5.40e-02 120 chr3R:13789857-13789977 2.84e-03 61_[+3(1.52e-05)]_51 chr2L:11940752-11940872 5.52e-01 120 chr3R:18987567-18987687 9.46e-03 44_[+1(1.76e-05)]_68 chr3R:10375529-10375649 2.56e-02 120 chrX:7242411-7242531 9.82e-04 109_[+3(1.52e-05)]_3 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************