******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4854.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:15328244-15328364 1.0000 120 chrX:13722117-13722237 1.0000 120 chr3R:24876977-24877097 1.0000 120 chr2L:15771146-15771266 1.0000 120 chr3R:13710788-13710908 1.0000 120 chrX:8251676-8251796 1.0000 120 chrX:8757943-8758063 1.0000 120 chr2R:12519048-12519168 1.0000 120 chr2L:3711680-3711800 1.0000 120 chr3L:15014487-15014607 1.0000 120 chr2R:7785923-7786043 1.0000 120 chr3L:8411754-8411874 1.0000 120 chr2R:14871240-14871360 1.0000 120 chr3R:31743446-31743566 1.0000 120 chr2R:17536295-17536415 1.0000 120 chr2R:19129543-19129663 1.0000 120 chrX:11368141-11368261 1.0000 120 chr3L:21175527-21175647 1.0000 120 chr2L:6852055-6852175 1.0000 120 chrX:2170577-2170697 1.0000 120 chr3R:31669149-31669269 1.0000 120 chr3R:13780896-13781016 1.0000 120 chr3R:10863194-10863314 1.0000 120 chrX:16547573-16547693 1.0000 120 chr2L:8123968-8124088 1.0000 120 chr2L:3713122-3713242 1.0000 120 chr3L:17352927-17353047 1.0000 120 chr3L:22872121-22872241 1.0000 120 chr2L:6852266-6852386 1.0000 120 chr3L:21216833-21216953 1.0000 120 chr2R:21522192-21522312 1.0000 120 chrX:8265368-8265488 1.0000 120 chr3R:30466879-30466999 1.0000 120 chr3R:13782181-13782301 1.0000 120 chr3L:21196706-21196826 1.0000 120 chr2R:24743650-24743770 1.0000 120 chr3L:5662164-5662284 1.0000 120 chr2L:4459653-4459773 1.0000 120 chr2L:8544234-8544354 1.0000 120 chr2R:14981125-14981245 1.0000 120 chr3R:18199735-18199855 1.0000 120 chr2R:16202828-16202948 1.0000 120 chr3R:12090740-12090860 1.0000 120 chr3L:505902-506022 1.0000 120 chr3R:9986250-9986370 1.0000 120 chr2L:13878966-13879086 1.0000 120 chr3L:21175732-21175852 1.0000 120 chr2L:6527114-6527234 1.0000 120 chr3R:15287870-15287990 1.0000 120 chr3L:292233-292353 1.0000 120 chr2L:14011738-14011858 1.0000 120 chr2R:22403459-22403579 1.0000 120 chr2R:22062504-22062624 1.0000 120 chr3L:17532456-17532576 1.0000 120 chr2L:2037572-2037692 1.0000 120 chr2R:17272598-17272718 1.0000 120 chr2R:23894863-23894983 1.0000 120 chr3R:31669349-31669469 1.0000 120 chr3L:18837971-18838091 1.0000 120 chr3L:14549345-14549465 1.0000 120 chr3L:11107562-11107682 1.0000 120 chr3L:4521946-4522066 1.0000 120 chr2R:12729334-12729454 1.0000 120 chr2R:15676015-15676135 1.0000 120 chr3R:20908776-20908896 1.0000 120 chr3R:10688948-10689068 1.0000 120 chr3L:10691219-10691339 1.0000 120 chr3R:16309450-16309570 1.0000 120 chr3L:16045405-16045525 1.0000 120 chr3R:7492170-7492290 1.0000 120 chr3R:23927631-23927751 1.0000 120 chr2R:21662444-21662564 1.0000 120 chr2L:13512275-13512395 1.0000 120 chr3L:10694073-10694193 1.0000 120 chr2L:7566811-7566931 1.0000 120 chr3R:19879728-19879848 1.0000 120 chr3R:14741449-14741569 1.0000 120 chr2L:9509721-9509841 1.0000 120 chr2R:18605495-18605615 1.0000 120 chr3R:14657124-14657244 1.0000 120 chr3L:20276727-20276847 1.0000 120 chr2R:9103152-9103272 1.0000 120 chr3R:21140655-21140775 1.0000 120 chr3R:23348009-23348129 1.0000 120 chr2L:17203974-17204094 1.0000 120 chr3L:17427184-17427304 1.0000 120 chr2R:23656651-23656771 1.0000 120 chr3L:20710668-20710788 1.0000 120 chr2L:7515547-7515667 1.0000 120 chr3R:9039552-9039672 1.0000 120 chr2R:20330592-20330712 1.0000 120 chr3R:22367238-22367358 1.0000 120 chr3R:11822460-11822580 1.0000 120 chr3R:19011090-19011210 1.0000 120 chr3R:10203715-10203835 1.0000 120 chr3L:7862715-7862835 1.0000 120 chr4:1053857-1053977 1.0000 120 chr2R:15922079-15922199 1.0000 120 chrX:17175875-17175995 1.0000 120 chr3L:745712-745832 1.0000 120 chr3R:6170872-6170992 1.0000 120 chr3R:24585460-24585580 1.0000 120 chr2L:102303-102423 1.0000 120 chr3L:1647442-1647562 1.0000 120 chr3R:15792557-15792677 1.0000 120 chrX:15591784-15591904 1.0000 120 chr3R:18923382-18923502 1.0000 120 chr2R:16344422-16344542 1.0000 120 chr2R:6464957-6465077 1.0000 120 chrX:11368349-11368469 1.0000 120 chr2L:19140951-19141071 1.0000 120 chr2R:14170465-14170585 1.0000 120 chr3R:25215195-25215315 1.0000 120 chr2L:9493455-9493575 1.0000 120 chr3R:27274619-27274739 1.0000 120 chr2R:22060840-22060960 1.0000 120 chr2L:10850796-10850916 1.0000 120 chrX:17582839-17582959 1.0000 120 chr3R:29480081-29480201 1.0000 120 chr2L:5771323-5771443 1.0000 120 chr2R:10196391-10196511 1.0000 120 chrX:20506033-20506153 1.0000 120 chr2R:7167967-7168087 1.0000 120 chr3R:26952324-26952444 1.0000 120 chr2L:7702466-7702586 1.0000 120 chr3R:7082019-7082139 1.0000 120 chr3L:19586090-19586210 1.0000 120 chr3R:18438871-18438991 1.0000 120 chr3L:16544354-16544474 1.0000 120 chr3R:30789526-30789646 1.0000 120 chr2L:17784754-17784874 1.0000 120 chr3L:8029459-8029579 1.0000 120 chrX:9120899-9121019 1.0000 120 chrX:12889117-12889237 1.0000 120 chr2R:16170801-16170921 1.0000 120 chr3L:6264600-6264720 1.0000 120 chr3R:26235204-26235324 1.0000 120 chrX:801661-801781 1.0000 120 chr2R:9388743-9388863 1.0000 120 chr3R:10024169-10024289 1.0000 120 chr3L:6609346-6609466 1.0000 120 chr3L:9505232-9505352 1.0000 120 chr2L:12372605-12372725 1.0000 120 chr3R:14077114-14077234 1.0000 120 chr3R:11967598-11967718 1.0000 120 chrX:16286215-16286335 1.0000 120 chr2L:6797582-6797702 1.0000 120 chr3L:11258582-11258702 1.0000 120 chr3L:11303987-11304107 1.0000 120 chr2R:20996197-20996317 1.0000 120 chr3R:5746727-5746847 1.0000 120 chr3L:20786115-20786235 1.0000 120 chr2R:18171963-18172083 1.0000 120 chr3L:3336839-3336959 1.0000 120 chr2L:16690130-16690250 1.0000 120 chr2R:9819985-9820105 1.0000 120 chrX:18899845-18899965 1.0000 120 chr3L:11336517-11336637 1.0000 120 chr3L:8290063-8290183 1.0000 120 chrX:12631507-12631627 1.0000 120 chr3L:12037859-12037979 1.0000 120 chr2R:14302778-14302898 1.0000 120 chr3R:24809758-24809878 1.0000 120 chr3R:11244113-11244233 1.0000 120 chr3R:23228727-23228847 1.0000 120 chr2R:23578534-23578654 1.0000 120 chr2L:3477380-3477500 1.0000 120 chr3R:21499619-21499739 1.0000 120 chr3R:6345956-6346076 1.0000 120 chr3L:3771000-3771120 1.0000 120 chr3R:22367439-22367559 1.0000 120 chr3L:17596984-17597104 1.0000 120 chr2R:11809505-11809625 1.0000 120 chrX:9047116-9047236 1.0000 120 chr3L:11285248-11285368 1.0000 120 chr2R:18125811-18125931 1.0000 120 chr3L:1352252-1352372 1.0000 120 chr2L:6461646-6461766 1.0000 120 chr3R:9637643-9637763 1.0000 120 chr2L:1980797-1980917 1.0000 120 chr2L:13219830-13219950 1.0000 120 chr3L:9509565-9509685 1.0000 120 chr2R:17461191-17461311 1.0000 120 chr4:59091-59211 1.0000 120 chrX:9156609-9156729 1.0000 120 chrX:13626029-13626149 1.0000 120 chr2R:18514026-18514146 1.0000 120 chr4:406947-407067 1.0000 120 chr3L:3543802-3543922 1.0000 120 chr3L:12414810-12414930 1.0000 120 chrX:11451139-11451259 1.0000 120 chr2R:17545031-17545151 1.0000 120 chr2R:9712340-9712460 1.0000 120 chr3R:21350147-21350267 1.0000 120 chr3L:16574548-16574668 1.0000 120 chr3R:28556494-28556614 1.0000 120 chr2L:11091281-11091401 1.0000 120 chr3R:30889139-30889259 1.0000 120 chr3R:16264010-16264130 1.0000 120 chr2L:10247012-10247132 1.0000 120 chr3L:1578629-1578749 1.0000 120 chr2L:14701644-14701764 1.0000 120 chr2R:22657070-22657190 1.0000 120 chr3L:15999757-15999877 1.0000 120 chr3L:1795463-1795583 1.0000 120 chr3L:18791627-18791747 1.0000 120 chr2R:14577783-14577903 1.0000 120 chr3L:3090783-3090903 1.0000 120 chr3R:22121329-22121449 1.0000 120 chr3L:10362816-10362936 1.0000 120 chr3R:22133793-22133913 1.0000 120 chrX:11660618-11660738 1.0000 120 chr2L:8740153-8740273 1.0000 120 chr2L:18136688-18136808 1.0000 120 chrX:13756990-13757110 1.0000 120 chr3R:9510286-9510406 1.0000 120 chr2L:10698131-10698251 1.0000 120 chr3L:21317987-21318107 1.0000 120 chr2R:17850792-17850912 1.0000 120 chr2L:15061544-15061664 1.0000 120 chr2R:18829736-18829856 1.0000 120 chr2L:13445598-13445718 1.0000 120 chr2R:11628149-11628269 1.0000 120 chr2R:17085663-17085783 1.0000 120 chr3R:10882221-10882341 1.0000 120 chr3L:11789924-11790044 1.0000 120 chr3R:6373894-6374014 1.0000 120 chrX:6621746-6621866 1.0000 120 chr2R:11640895-11641015 1.0000 120 chr2R:18660656-18660776 1.0000 120 chr3L:5789882-5790002 1.0000 120 chr2L:2494693-2494813 1.0000 120 chr2R:10303679-10303799 1.0000 120 chr3R:18298312-18298432 1.0000 120 chr3R:26937575-26937695 1.0000 120 chr3R:23345080-23345200 1.0000 120 chr3R:8744348-8744468 1.0000 120 chr2L:20890092-20890212 1.0000 120 chr2L:10767944-10768064 1.0000 120 chr2R:23574902-23575022 1.0000 120 chr2L:11199197-11199317 1.0000 120 chr3R:9052473-9052593 1.0000 120 chr3L:7978916-7979036 1.0000 120 chr2L:16275893-16276013 1.0000 120 chr3R:26130691-26130811 1.0000 120 chrX:7333318-7333438 1.0000 120 chr3L:603900-604020 1.0000 120 chr2R:9426438-9426558 1.0000 120 chr2L:7027151-7027271 1.0000 120 chr2L:5798143-5798263 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG4854/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4854.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.309 C 0.196 G 0.192 T 0.304 Background letter frequencies (from file dataset with add-one prior applied): A 0.309 C 0.196 G 0.192 T 0.304 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGSCAAC MEME-1 width = 8 sites = 71 llr = 635 E-value = 2.3e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGSCAAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::aa1 pos.-specific C :::5a::8 probability G ::95:::: matrix T 9a1::::1 bits 2.4 * 2.1 * 1.9 * * 1.7 ** ** Relative 1.4 ******* Entropy 1.2 ******** (12.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGCCAAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCAAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:12090740-12090860 48 1.28e-05 CCAGCCCGCG TTGCCAAC TACTGGGGGT chr2L:8544234-8544354 47 1.28e-05 CCGCAGCGCG TTGCCAAC CAAAAAAAGA chr2R:24743650-24743770 31 1.28e-05 ACTTGTCGCG TTGCCAAC CATTGCCAAA chr3R:30466879-30466999 37 1.28e-05 AAACACTGCG TTGCCAAC TGTGCGAAAA chr3L:22872121-22872241 63 1.28e-05 TCGGCTAGAG TTGCCAAC GATTTGGATT chr2L:3713122-3713242 33 1.28e-05 GCTGTTCGCG TTGCCAAC CTGTGAGAAT chrX:16547573-16547693 96 1.28e-05 AAGGCCATTG TTGCCAAC TGAAATTTTA chr3R:31669149-31669269 28 1.28e-05 TCGACCAATA TTGCCAAC TAGTTCGCTT chr2R:19129543-19129663 65 1.28e-05 CTGCATCGCG TTGCCAAC GAAACGGACT chr3R:31743446-31743566 49 1.28e-05 CTGCACTACA TTGCCAAC TACTCCGAAT chr2R:7785923-7786043 37 1.28e-05 TGTCAACGCG TTGCCAAC GCTAAGCTTT chr3L:15014487-15014607 45 1.28e-05 TATTTTCGCA TTGCCAAC TGATTCGAAC chr2L:3711680-3711800 59 1.28e-05 GATGGCAGAG TTGCCAAC TATCGTTATC chrX:8757943-8758063 63 1.28e-05 AGCAGCCGCG TTGCCAAC TGTTTCGTAT chrX:8251676-8251796 6 1.28e-05 CCGCG TTGCCAAC TGCCGCGTTG chr2L:15771146-15771266 63 1.28e-05 TAGCACCGCG TTGCCAAC TTACTTGCTA chrX:13722117-13722237 111 1.28e-05 CAAGCCAGCG TTGCCAAC GG chr3L:11789924-11790044 109 2.53e-05 TCGATATTGT TTGGCAAC TATC chr3L:1647442-1647562 52 2.53e-05 GCTGCCATGG TTGGCAAC TCCCTTTGCT chr3R:21140655-21140775 42 2.53e-05 GACGAATCAA TTGGCAAC AATCGATAGG chr2R:22403459-22403579 16 2.53e-05 AATCCCTGCG TTGGCAAC TTAAGAGCAA chr3R:9986250-9986370 97 2.53e-05 GGTCGGCTAG TTGGCAAC GCTAGTACAA chr2R:14981125-14981245 25 2.53e-05 TTGAAAATAG TTGGCAAC AATGCCAGCG chr3R:13782181-13782301 66 2.53e-05 TTTATGACAA TTGGCAAC GCGGGCAAAC chrX:8265368-8265488 110 2.53e-05 CTTCATTAAG TTGGCAAC GCC chr2R:21522192-21522312 67 2.53e-05 TGCAAAGTAA TTGGCAAC TTGATTTCCA chr3L:21216833-21216953 57 2.53e-05 TTTGCAGCAG TTGGCAAC GCGAGCAGTG chr3L:17352927-17353047 7 2.53e-05 TTTAAG TTGGCAAC AATGGCCCTA chr2L:8123968-8124088 54 2.53e-05 TTGCTAGTGA TTGGCAAC GCGAGCTGGC chr3R:10863194-10863314 55 2.53e-05 ACTGACGTAG TTGGCAAC GCGGCTCAGC chr3R:13780896-13781016 59 2.53e-05 TCCGTAATAG TTGGCAAC TCAATGCAAC chrX:2170577-2170697 63 2.53e-05 TAATGAATCG TTGGCAAC GCGATCAACT chr3L:21175527-21175647 7 2.53e-05 TTTTAG TTGGCAAC GCGGTATGGC chrX:11368141-11368261 27 2.53e-05 GAACCAGTGG TTGGCAAC GCGAGGTTCT chr2R:17536295-17536415 43 2.53e-05 CAGTGAGTAG TTGGCAAC ACTAACCATT chr3L:8411754-8411874 64 2.53e-05 TGCAAAGTAG TTGGCAAC GCGGTAATTG chr2R:12519048-12519168 88 2.53e-05 TTGCCTATAG TTGGCAAC GCGAGTTCAC chr3R:13710788-13710908 73 2.53e-05 CAACAGTTAG TTGGCAAC GCGTGTTATC chr3R:24876977-24877097 72 2.53e-05 AACAGAGTAG TTGGCAAC GCGGTGCTTG chr3R:15328244-15328364 75 2.53e-05 ACTGTGTTGT TTGGCAAC GCGACCGCTG chr2R:14302778-14302898 49 4.50e-05 GACATAAAAA TTGCCAAT CGGAAATTTC chr2R:15676015-15676135 94 4.50e-05 AGGTATGAGT TTGCCAAT AGGCCTTGCG chr2R:16202828-16202948 98 4.50e-05 GCGATCAGTG TTGCCAAT TTAGCTTTCT chr2L:4459653-4459773 5 4.50e-05 ACTG TTGCCAAT TGGTGTTAAT chr3L:21196706-21196826 48 4.50e-05 TGCTTCAGTG TTGCCAAT CGTTGTTTAC chr2R:14871240-14871360 66 4.50e-05 TTTATAGGCG TTGCCAAT TGAATTAATA chr2L:2037572-2037692 42 6.44e-05 AACATGTAAG TTGGCAAT ATAGCGAGTA chr3R:15287870-15287990 59 6.44e-05 GCGCATGTAG TTGGCAAT GCAAATTCCA chr3R:22367439-22367559 81 8.06e-05 AGGCTCATTG GTGCCAAC TGTTTTTTCG chrX:12889117-12889237 82 8.06e-05 AGATCACCTG TTGCCACC TCCcacacac chr2L:10767944-10768064 109 9.64e-05 TTCTAGCACT GTGGCAAC TCGG chr3R:11967598-11967718 70 9.64e-05 TGTGACCAGC TTGGCACC AGGCGATAGC chr2R:14170465-14170585 11 9.64e-05 AATAGTCCAT TTGGCACC GATAGGCGCA chr2L:7566811-7566931 63 9.64e-05 ATTCTAAGAA GTGGCAAC GGTTGCATTA chr2R:9426438-9426558 15 1.30e-04 ATTCCGTTGG TTTCCAAC ACTGCGGCTC chr2L:12372605-12372725 51 1.30e-04 CTTGTTTAGT TTTCCAAC TCAAAACTCC chr3L:9505232-9505352 5 1.30e-04 AATA ATGCCAAC AGTTTGGGCA chrX:17582839-17582959 3 1.30e-04 TT ATGCCAAC CATTATTTGC chr2R:16344422-16344542 54 1.30e-04 ATTTAGTTGA TTTCCAAC ACCGACAACA chr3R:10203715-10203835 104 1.30e-04 TATGTTTTGC ATGCCAAC ATATTTAAT chr3R:20908776-20908896 78 1.30e-04 ACGATGATGA TTTCCAAC GGCTTACAAC chr2R:22062504-22062624 19 1.30e-04 GGCTATCGAA TTTCCAAC GCCATTATAT chr3R:10882221-10882341 14 1.82e-04 GCGAACAGCG ATGGCAAC TATCGGCTAT chr2R:9103152-9103272 25 1.82e-04 GGCGGTTGAA TTGCCAAA CTGATAGTGT chr2R:18605495-18605615 30 1.82e-04 CTGGCTTTTT TTGCCAAA CAGCTGTGTT chr3L:21175732-21175852 70 1.82e-04 TAAATTTTTT TTTGCAAC GCAACGGGCT chr3L:505902-506022 19 1.82e-04 CAATTCCGCG TTGCCAAA CAAAGTCAGC chr2L:5798143-5798263 112 2.02e-04 TGTCGTATAA TTGGCAAA T chr2R:23574902-23575022 43 2.02e-04 AGATATAGAA TTGGCAAA GAAAGCATAA chr2R:17545031-17545151 102 2.10e-04 AATATGCAAG TCGCCAAC CTTGGTGGAA chrX:18899845-18899965 21 2.18e-04 TAAGTGGGTG TCGGCAAC CCACACACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCAAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:12090740-12090860 1.3e-05 47_[+1]_65 chr2L:8544234-8544354 1.3e-05 46_[+1]_66 chr2R:24743650-24743770 1.3e-05 30_[+1]_82 chr3R:30466879-30466999 1.3e-05 36_[+1]_76 chr3L:22872121-22872241 1.3e-05 62_[+1]_50 chr2L:3713122-3713242 1.3e-05 32_[+1]_80 chrX:16547573-16547693 1.3e-05 95_[+1]_17 chr3R:31669149-31669269 1.3e-05 27_[+1]_85 chr2R:19129543-19129663 1.3e-05 64_[+1]_48 chr3R:31743446-31743566 1.3e-05 48_[+1]_64 chr2R:7785923-7786043 1.3e-05 36_[+1]_76 chr3L:15014487-15014607 1.3e-05 44_[+1]_68 chr2L:3711680-3711800 1.3e-05 58_[+1]_54 chrX:8757943-8758063 1.3e-05 62_[+1]_50 chrX:8251676-8251796 1.3e-05 5_[+1]_107 chr2L:15771146-15771266 1.3e-05 62_[+1]_50 chrX:13722117-13722237 1.3e-05 110_[+1]_2 chr3L:11789924-11790044 2.5e-05 108_[+1]_4 chr3L:1647442-1647562 2.5e-05 51_[+1]_61 chr3R:21140655-21140775 2.5e-05 41_[+1]_71 chr2R:22403459-22403579 2.5e-05 15_[+1]_97 chr3R:9986250-9986370 2.5e-05 96_[+1]_16 chr2R:14981125-14981245 2.5e-05 24_[+1]_88 chr3R:13782181-13782301 2.5e-05 65_[+1]_47 chrX:8265368-8265488 2.5e-05 109_[+1]_3 chr2R:21522192-21522312 2.5e-05 66_[+1]_46 chr3L:21216833-21216953 2.5e-05 56_[+1]_56 chr3L:17352927-17353047 2.5e-05 6_[+1]_106 chr2L:8123968-8124088 2.5e-05 53_[+1]_59 chr3R:10863194-10863314 2.5e-05 54_[+1]_58 chr3R:13780896-13781016 2.5e-05 58_[+1]_54 chrX:2170577-2170697 2.5e-05 62_[+1]_50 chr3L:21175527-21175647 2.5e-05 6_[+1]_106 chrX:11368141-11368261 2.5e-05 26_[+1]_86 chr2R:17536295-17536415 2.5e-05 42_[+1]_70 chr3L:8411754-8411874 2.5e-05 63_[+1]_49 chr2R:12519048-12519168 2.5e-05 87_[+1]_25 chr3R:13710788-13710908 2.5e-05 72_[+1]_40 chr3R:24876977-24877097 2.5e-05 71_[+1]_41 chr3R:15328244-15328364 2.5e-05 74_[+1]_38 chr2R:14302778-14302898 4.5e-05 48_[+1]_64 chr2R:15676015-15676135 4.5e-05 93_[+1]_19 chr2R:16202828-16202948 4.5e-05 97_[+1]_15 chr2L:4459653-4459773 4.5e-05 4_[+1]_108 chr3L:21196706-21196826 4.5e-05 47_[+1]_65 chr2R:14871240-14871360 4.5e-05 65_[+1]_47 chr2L:2037572-2037692 6.4e-05 41_[+1]_71 chr3R:15287870-15287990 6.4e-05 58_[+1]_54 chr3R:22367439-22367559 8.1e-05 80_[+1]_32 chrX:12889117-12889237 8.1e-05 81_[+1]_31 chr2L:10767944-10768064 9.6e-05 108_[+1]_4 chr3R:11967598-11967718 9.6e-05 69_[+1]_43 chr2R:14170465-14170585 9.6e-05 10_[+1]_102 chr2L:7566811-7566931 9.6e-05 62_[+1]_50 chr2R:9426438-9426558 0.00013 14_[+1]_98 chr2L:12372605-12372725 0.00013 50_[+1]_62 chr3L:9505232-9505352 0.00013 4_[+1]_108 chrX:17582839-17582959 0.00013 2_[+1]_110 chr2R:16344422-16344542 0.00013 53_[+1]_59 chr3R:10203715-10203835 0.00013 103_[+1]_9 chr3R:20908776-20908896 0.00013 77_[+1]_35 chr2R:22062504-22062624 0.00013 18_[+1]_94 chr3R:10882221-10882341 0.00018 13_[+1]_99 chr2R:9103152-9103272 0.00018 24_[+1]_88 chr2R:18605495-18605615 0.00018 29_[+1]_83 chr3L:21175732-21175852 0.00018 69_[+1]_43 chr3L:505902-506022 0.00018 18_[+1]_94 chr2L:5798143-5798263 0.0002 111_[+1]_1 chr2R:23574902-23575022 0.0002 42_[+1]_70 chr2R:17545031-17545151 0.00021 101_[+1]_11 chrX:18899845-18899965 0.00022 20_[+1]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCAAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGSCAAC width=8 seqs=71 chr3R:12090740-12090860 ( 48) TTGCCAAC 1 chr2L:8544234-8544354 ( 47) TTGCCAAC 1 chr2R:24743650-24743770 ( 31) TTGCCAAC 1 chr3R:30466879-30466999 ( 37) TTGCCAAC 1 chr3L:22872121-22872241 ( 63) TTGCCAAC 1 chr2L:3713122-3713242 ( 33) TTGCCAAC 1 chrX:16547573-16547693 ( 96) TTGCCAAC 1 chr3R:31669149-31669269 ( 28) TTGCCAAC 1 chr2R:19129543-19129663 ( 65) TTGCCAAC 1 chr3R:31743446-31743566 ( 49) TTGCCAAC 1 chr2R:7785923-7786043 ( 37) TTGCCAAC 1 chr3L:15014487-15014607 ( 45) TTGCCAAC 1 chr2L:3711680-3711800 ( 59) TTGCCAAC 1 chrX:8757943-8758063 ( 63) TTGCCAAC 1 chrX:8251676-8251796 ( 6) TTGCCAAC 1 chr2L:15771146-15771266 ( 63) TTGCCAAC 1 chrX:13722117-13722237 ( 111) TTGCCAAC 1 chr3L:11789924-11790044 ( 109) TTGGCAAC 1 chr3L:1647442-1647562 ( 52) TTGGCAAC 1 chr3R:21140655-21140775 ( 42) TTGGCAAC 1 chr2R:22403459-22403579 ( 16) TTGGCAAC 1 chr3R:9986250-9986370 ( 97) TTGGCAAC 1 chr2R:14981125-14981245 ( 25) TTGGCAAC 1 chr3R:13782181-13782301 ( 66) TTGGCAAC 1 chrX:8265368-8265488 ( 110) TTGGCAAC 1 chr2R:21522192-21522312 ( 67) TTGGCAAC 1 chr3L:21216833-21216953 ( 57) TTGGCAAC 1 chr3L:17352927-17353047 ( 7) TTGGCAAC 1 chr2L:8123968-8124088 ( 54) TTGGCAAC 1 chr3R:10863194-10863314 ( 55) TTGGCAAC 1 chr3R:13780896-13781016 ( 59) TTGGCAAC 1 chrX:2170577-2170697 ( 63) TTGGCAAC 1 chr3L:21175527-21175647 ( 7) TTGGCAAC 1 chrX:11368141-11368261 ( 27) TTGGCAAC 1 chr2R:17536295-17536415 ( 43) TTGGCAAC 1 chr3L:8411754-8411874 ( 64) TTGGCAAC 1 chr2R:12519048-12519168 ( 88) TTGGCAAC 1 chr3R:13710788-13710908 ( 73) TTGGCAAC 1 chr3R:24876977-24877097 ( 72) TTGGCAAC 1 chr3R:15328244-15328364 ( 75) TTGGCAAC 1 chr2R:14302778-14302898 ( 49) TTGCCAAT 1 chr2R:15676015-15676135 ( 94) TTGCCAAT 1 chr2R:16202828-16202948 ( 98) TTGCCAAT 1 chr2L:4459653-4459773 ( 5) TTGCCAAT 1 chr3L:21196706-21196826 ( 48) TTGCCAAT 1 chr2R:14871240-14871360 ( 66) TTGCCAAT 1 chr2L:2037572-2037692 ( 42) TTGGCAAT 1 chr3R:15287870-15287990 ( 59) TTGGCAAT 1 chr3R:22367439-22367559 ( 81) GTGCCAAC 1 chrX:12889117-12889237 ( 82) TTGCCACC 1 chr2L:10767944-10768064 ( 109) GTGGCAAC 1 chr3R:11967598-11967718 ( 70) TTGGCACC 1 chr2R:14170465-14170585 ( 11) TTGGCACC 1 chr2L:7566811-7566931 ( 63) GTGGCAAC 1 chr2R:9426438-9426558 ( 15) TTTCCAAC 1 chr2L:12372605-12372725 ( 51) TTTCCAAC 1 chr3L:9505232-9505352 ( 5) ATGCCAAC 1 chrX:17582839-17582959 ( 3) ATGCCAAC 1 chr2R:16344422-16344542 ( 54) TTTCCAAC 1 chr3R:10203715-10203835 ( 104) ATGCCAAC 1 chr3R:20908776-20908896 ( 78) TTTCCAAC 1 chr2R:22062504-22062624 ( 19) TTTCCAAC 1 chr3R:10882221-10882341 ( 14) ATGGCAAC 1 chr2R:9103152-9103272 ( 25) TTGCCAAA 1 chr2R:18605495-18605615 ( 30) TTGCCAAA 1 chr3L:21175732-21175852 ( 70) TTTGCAAC 1 chr3L:505902-506022 ( 19) TTGCCAAA 1 chr2L:5798143-5798263 ( 112) TTGGCAAA 1 chr2R:23574902-23575022 ( 43) TTGGCAAA 1 chr2R:17545031-17545151 ( 102) TCGCCAAC 1 chrX:18899845-18899965 ( 21) TCGGCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCAAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.46923 E= 2.3e-047 -245 -1279 -218 157 -1279 -280 -1279 168 -1279 -1279 226 -185 -1279 141 132 -1279 -1279 235 -1279 -1279 170 -1279 -1279 -1279 163 -221 -1279 -1279 -213 206 -1279 -143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCAAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 2.3e-047 0.056338 0.000000 0.042254 0.901408 0.000000 0.028169 0.000000 0.971831 0.000000 0.000000 0.915493 0.084507 0.000000 0.521127 0.478873 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.957746 0.042254 0.000000 0.000000 0.070423 0.816901 0.000000 0.112676 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGSCAAC MEME-1 regular expression -------------------------------------------------------------------------------- TTG[CG]CAAC -------------------------------------------------------------------------------- Time 7.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTT MEME-2 width = 8 sites = 23 llr = 226 E-value = 6.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::2: pos.-specific C a::a::13 probability G ::a::a:1 matrix T ::::a:77 bits 2.4 * ** * 2.1 * ** * 1.9 * ** * 1.7 ****** Relative 1.4 ****** Entropy 1.2 ****** (14.1 bits) 1.0 ****** 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTT consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6373894-6374014 15 1.23e-05 AAACAAGAAA CAGCTGTT GTCAAACAGC chrX:11451139-11451259 92 1.23e-05 ATTTCTGGTT CAGCTGTT ACAAAAAATA chr3R:11244113-11244233 109 1.23e-05 AAGCCGCTAT CAGCTGTT TGCA chr2R:22060840-22060960 48 1.23e-05 TCGGATGCAA CAGCTGTT CGTCGCCTGA chr3L:10694073-10694193 3 1.23e-05 AA CAGCTGTT GCCCAGTGCT chr2L:3713122-3713242 21 1.23e-05 CCCTAAAAAT CAGCTGTT CGCGTTGCCA chr3R:10863194-10863314 69 1.23e-05 CAACGCGGCT CAGCTGTT CCGTTCTCAC chr3R:13780896-13781016 93 1.23e-05 GGACGATAAA CAGCTGTT CGGGCGGCAA chr2L:3711680-3711800 40 1.23e-05 CAAACATTAA CAGCTGTT CGATGGCAGA chr3R:13710788-13710908 90 1.23e-05 CGCGTGTTAT CAGCTGTT CTTGTTGGTC chrX:11368349-11368469 90 2.02e-05 CCACAGTTCA CAGCTGTC AGTGTCGTTT chr3L:18837971-18838091 65 2.02e-05 GGCTCAGAAG CAGCTGTC AAATGTAAAT chr3R:13782181-13782301 90 2.02e-05 AAACCACAAA CAGCTGTC ACTTGGCCGG chr2R:17850792-17850912 17 3.27e-05 ATATCGGTAA CAGCTGAT GGCAGGGCTG chr2L:6461646-6461766 95 3.27e-05 TAAAATAACC CAGCTGAT TCAACACTCA chr2R:18171963-18172083 35 3.27e-05 TTGTTAGAAA CAGCTGAT TGCCGTTTTG chr3L:21196706-21196826 4 3.27e-05 TAT CAGCTGAT CGGGTTTAAT chr2R:22403459-22403579 85 4.06e-05 GCAACGCGGC CAGCTGCT GTGGGTGGGA chr2R:11640895-11641015 42 4.84e-05 GAGACCAGAC CAGCTGTG GGCGGGTCAG chr2R:18605495-18605615 38 4.84e-05 TTTTGCCAAA CAGCTGTG TTTGCCCATG chr2L:8123968-8124088 21 5.65e-05 TTCGTTTTGA CAGCTGAC GTACACAGTG chr2R:10303679-10303799 109 6.16e-05 AATATTTGTG CAGCTGCC CCAA chr2R:17272598-17272718 31 6.16e-05 GATGCCAGCA CAGCTGCC TTTGTGTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6373894-6374014 1.2e-05 14_[+2]_98 chrX:11451139-11451259 1.2e-05 91_[+2]_21 chr3R:11244113-11244233 1.2e-05 108_[+2]_4 chr2R:22060840-22060960 1.2e-05 47_[+2]_65 chr3L:10694073-10694193 1.2e-05 2_[+2]_110 chr2L:3713122-3713242 1.2e-05 20_[+2]_92 chr3R:10863194-10863314 1.2e-05 68_[+2]_44 chr3R:13780896-13781016 1.2e-05 92_[+2]_20 chr2L:3711680-3711800 1.2e-05 39_[+2]_73 chr3R:13710788-13710908 1.2e-05 89_[+2]_23 chrX:11368349-11368469 2e-05 89_[+2]_23 chr3L:18837971-18838091 2e-05 64_[+2]_48 chr3R:13782181-13782301 2e-05 89_[+2]_23 chr2R:17850792-17850912 3.3e-05 16_[+2]_96 chr2L:6461646-6461766 3.3e-05 94_[+2]_18 chr2R:18171963-18172083 3.3e-05 34_[+2]_78 chr3L:21196706-21196826 3.3e-05 3_[+2]_109 chr2R:22403459-22403579 4.1e-05 84_[+2]_28 chr2R:11640895-11641015 4.8e-05 41_[+2]_71 chr2R:18605495-18605615 4.8e-05 37_[+2]_75 chr2L:8123968-8124088 5.6e-05 20_[+2]_92 chr2R:10303679-10303799 6.2e-05 108_[+2]_4 chr2R:17272598-17272718 6.2e-05 30_[+2]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTT width=8 seqs=23 chr3R:6373894-6374014 ( 15) CAGCTGTT 1 chrX:11451139-11451259 ( 92) CAGCTGTT 1 chr3R:11244113-11244233 ( 109) CAGCTGTT 1 chr2R:22060840-22060960 ( 48) CAGCTGTT 1 chr3L:10694073-10694193 ( 3) CAGCTGTT 1 chr2L:3713122-3713242 ( 21) CAGCTGTT 1 chr3R:10863194-10863314 ( 69) CAGCTGTT 1 chr3R:13780896-13781016 ( 93) CAGCTGTT 1 chr2L:3711680-3711800 ( 40) CAGCTGTT 1 chr3R:13710788-13710908 ( 90) CAGCTGTT 1 chrX:11368349-11368469 ( 90) CAGCTGTC 1 chr3L:18837971-18838091 ( 65) CAGCTGTC 1 chr3R:13782181-13782301 ( 90) CAGCTGTC 1 chr2R:17850792-17850912 ( 17) CAGCTGAT 1 chr2L:6461646-6461766 ( 95) CAGCTGAT 1 chr2R:18171963-18172083 ( 35) CAGCTGAT 1 chr3L:21196706-21196826 ( 4) CAGCTGAT 1 chr2R:22403459-22403579 ( 85) CAGCTGCT 1 chr2R:11640895-11641015 ( 42) CAGCTGTG 1 chr2R:18605495-18605615 ( 38) CAGCTGTG 1 chr2L:8123968-8124088 ( 21) CAGCTGAC 1 chr2R:10303679-10303799 ( 109) CAGCTGCC 1 chr2R:17272598-17272718 ( 31) CAGCTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 6.8e-004 -1117 235 -1117 -1117 170 -1117 -1117 -1117 -1117 -1117 238 -1117 -1117 235 -1117 -1117 -1117 -1117 -1117 172 -1117 -1117 238 -1117 -50 -59 -1117 110 -1117 41 -114 110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.8e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.217391 0.130435 0.000000 0.652174 0.000000 0.260870 0.086957 0.652174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-2 regular expression -------------------------------------------------------------------------------- CAGCTG[TA][TC] -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCGATAG MEME-3 width = 8 sites = 23 llr = 220 E-value = 1.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCGATAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 9:::a:9: pos.-specific C ::a::::: probability G :::a::18 matrix T 1a:::a:2 bits 2.4 ** 2.1 ** 1.9 ** 1.7 ***** Relative 1.4 ******* Entropy 1.2 ******** (13.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCGATAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7978916-7979036 30 1.97e-05 CTCTAAAAAC ATCGATAG CCAAACCTTG chr2R:17850792-17850912 49 1.97e-05 CACTAGTGCA ATCGATAG ATCGATATGT chr3L:21317987-21318107 40 1.97e-05 CATGTAAACA ATCGATAG TGCTGCGAGG chr2L:14701644-14701764 73 1.97e-05 TAGTGTATAT ATCGATAG GTATTTGTGA chr3R:11244113-11244233 49 1.97e-05 TATCAAGGGC ATCGATAG TTTGGCTGCT chr2R:14302778-14302898 18 1.97e-05 GTTTTCTGCT ATCGATAG GATAGTGCTG chrX:16286215-16286335 12 1.97e-05 AGTGCGATAT ATCGATAG GTGCAGTGTG chr3R:25215195-25215315 8 1.97e-05 ACAACAT ATCGATAG GCACCGGGCG chr2L:102303-102423 83 1.97e-05 GTTTTTATTT ATCGATAG TGTCGGCTTT chr3R:11822460-11822580 23 1.97e-05 TTGCACTGTT ATCGATAG TCTAGGACCA chr3R:21140655-21140775 51 1.97e-05 ATTGGCAACA ATCGATAG GATCACTTTG chr3L:5662164-5662284 68 1.97e-05 TTCGGACGAT ATCGATAG ATGCCTTGTA chr2R:24743650-24743770 86 1.97e-05 AACAGAAAAC ATCGATAG CGATTTGTGT chr3L:11789924-11790044 98 5.09e-05 TGGTAAACGA ATCGATAT TGTTTGGCAA chr2R:18514026-18514146 5 5.09e-05 GCCT ATCGATAT AAAATTAAAA chr2R:22060840-22060960 67 5.09e-05 GTCGCCTGAA ATCGATAT ATCGCAATTT chr3L:4521946-4522066 98 5.09e-05 TTATAAATGA ATCGATAT CTGTGCTTCG chr2L:15771146-15771266 42 5.09e-05 CCTATCGCTT ATCGATAT TTCTAGCACC chr3R:9510286-9510406 51 8.25e-05 CAGCACATTC ATCGATGG TTTGATATTT chrX:12631507-12631627 89 8.25e-05 CTTGCCGTTC ATCGATGG CGCCCAGTCG chrX:17175875-17175995 93 8.25e-05 TTGAATGTAG TTCGATAG TTAGGTGTCT chr3R:23927631-23927751 85 8.25e-05 ATAGGCAACT TTCGATAG GACGAACTTG chrX:11368141-11368261 53 8.25e-05 CTAGTTCTTT TTCGATAG TTCTCAGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7978916-7979036 2e-05 29_[+3]_83 chr2R:17850792-17850912 2e-05 48_[+3]_64 chr3L:21317987-21318107 2e-05 39_[+3]_73 chr2L:14701644-14701764 2e-05 72_[+3]_40 chr3R:11244113-11244233 2e-05 48_[+3]_64 chr2R:14302778-14302898 2e-05 17_[+3]_95 chrX:16286215-16286335 2e-05 11_[+3]_101 chr3R:25215195-25215315 2e-05 7_[+3]_105 chr2L:102303-102423 2e-05 82_[+3]_30 chr3R:11822460-11822580 2e-05 22_[+3]_90 chr3R:21140655-21140775 2e-05 50_[+3]_62 chr3L:5662164-5662284 2e-05 67_[+3]_45 chr2R:24743650-24743770 2e-05 85_[+3]_27 chr3L:11789924-11790044 5.1e-05 97_[+3]_15 chr2R:18514026-18514146 5.1e-05 4_[+3]_108 chr2R:22060840-22060960 5.1e-05 66_[+3]_46 chr3L:4521946-4522066 5.1e-05 97_[+3]_15 chr2L:15771146-15771266 5.1e-05 41_[+3]_71 chr3R:9510286-9510406 8.3e-05 50_[+3]_62 chrX:12631507-12631627 8.3e-05 88_[+3]_24 chrX:17175875-17175995 8.3e-05 92_[+3]_20 chr3R:23927631-23927751 8.3e-05 84_[+3]_28 chrX:11368141-11368261 8.3e-05 52_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCGATAG width=8 seqs=23 chr3L:7978916-7979036 ( 30) ATCGATAG 1 chr2R:17850792-17850912 ( 49) ATCGATAG 1 chr3L:21317987-21318107 ( 40) ATCGATAG 1 chr2L:14701644-14701764 ( 73) ATCGATAG 1 chr3R:11244113-11244233 ( 49) ATCGATAG 1 chr2R:14302778-14302898 ( 18) ATCGATAG 1 chrX:16286215-16286335 ( 12) ATCGATAG 1 chr3R:25215195-25215315 ( 8) ATCGATAG 1 chr2L:102303-102423 ( 83) ATCGATAG 1 chr3R:11822460-11822580 ( 23) ATCGATAG 1 chr3R:21140655-21140775 ( 51) ATCGATAG 1 chr3L:5662164-5662284 ( 68) ATCGATAG 1 chr2R:24743650-24743770 ( 86) ATCGATAG 1 chr3L:11789924-11790044 ( 98) ATCGATAT 1 chr2R:18514026-18514146 ( 5) ATCGATAT 1 chr2R:22060840-22060960 ( 67) ATCGATAT 1 chr3L:4521946-4522066 ( 98) ATCGATAT 1 chr2L:15771146-15771266 ( 42) ATCGATAT 1 chr3R:9510286-9510406 ( 51) ATCGATGG 1 chrX:12631507-12631627 ( 89) ATCGATGG 1 chrX:17175875-17175995 ( 93) TTCGATAG 1 chr3R:23927631-23927751 ( 85) TTCGATAG 1 chrX:11368141-11368261 ( 53) TTCGATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6641 E= 1.3e-001 149 -1117 -1117 -122 -1117 -1117 -1117 172 -1117 235 -1117 -1117 -1117 -1117 238 -1117 170 -1117 -1117 -1117 -1117 -1117 -1117 172 156 -1117 -114 -1117 -1117 -1117 203 -48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.3e-001 0.869565 0.000000 0.000000 0.130435 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.913043 0.000000 0.086957 0.000000 0.000000 0.000000 0.782609 0.217391 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATAG MEME-3 regular expression -------------------------------------------------------------------------------- ATCGATA[GT] -------------------------------------------------------------------------------- Time 19.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGKGCTG MEME-4 width = 8 sites = 23 llr = 217 E-value = 3.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::2: pos.-specific C 8::2:a:: probability G ::83a::a matrix T 2:25::8: bits 2.4 ** * 2.1 ** * 1.9 ** * 1.7 *** ** * Relative 1.4 *** ** * Entropy 1.2 *** ** * (13.6 bits) 1.0 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGTGCTG consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18660656-18660776 37 7.76e-06 CGCTGCTCTC CAGTGCTG GTTAATTTCC chr3R:21499619-21499739 12 7.76e-06 AATTACCGAC CAGTGCTG CCCATCGGCG chr2R:16170801-16170921 40 7.76e-06 ATCTGCCTAA CAGTGCTG TAAAATGTGT chr3R:23348009-23348129 52 7.76e-06 TGTTACTTTA CAGTGCTG TGCAACAGCT chr3L:10694073-10694193 14 7.76e-06 AGCTGTTGCC CAGTGCTG TGAAGTGTCG chr2R:17850792-17850912 27 1.27e-05 CAGCTGATGG CAGGGCTG GCAGCACTAG chr3L:16574548-16574668 74 1.27e-05 AGTGCGAAAT CAGGGCTG GTCGGCTACA chr2R:18125811-18125931 38 1.27e-05 GCAGAAGCGC CAGGGCTG CACAATAGTC chr3R:18199735-18199855 57 1.27e-05 TTAATTATGA CAGGGCTG CCAGCGTGCT chr3R:9052473-9052593 58 1.77e-05 GGTCGGATCG CAGCGCTG CTGGATTTTT chr3R:16264010-16264130 67 1.77e-05 TACTACTGAG CAGCGCTG CCAGATTCGG chr3L:745712-745832 100 2.56e-05 GAATTTATTT CAGTGCAG CTACTCAGCA chr3L:10691219-10691339 13 2.56e-05 gcagcagtag cagtgcag cggcaTCCTT chr2L:8123968-8124088 34 2.56e-05 CTGACGTACA CAGTGCAG AGTTGCTAGT chr3R:20908776-20908896 47 3.56e-05 AAGCAATGTT CAGCGCAG CTTTAAAGCT chr2R:14302778-14302898 28 6.00e-05 ATCGATAGGA TAGTGCTG CCAGACATAA chr3L:8290063-8290183 98 6.00e-05 TAACTGCTGA TAGTGCTG TGCAATGCAG chr3L:20786115-20786235 77 6.00e-05 ATCGAGATGG CATTGCTG CGATAGGCAG chr2L:5771323-5771443 105 6.00e-05 GTTTGAAAGT CATTGCTG GCCTTATG chr3R:26130691-26130811 55 7.53e-05 GTAAACAAGT CATGGCTG TGTGTACTTT chr2R:11640895-11641015 106 7.53e-05 GCTTCGTTGT TAGGGCTG TATGACA chr2R:9712340-9712460 87 9.10e-05 GGTTAACAAA CATCGCTG TAAAAACGAC chr3L:17352927-17353047 94 9.10e-05 AACCTCGAGA TAGCGCTG CCACTATGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18660656-18660776 7.8e-06 36_[+4]_76 chr3R:21499619-21499739 7.8e-06 11_[+4]_101 chr2R:16170801-16170921 7.8e-06 39_[+4]_73 chr3R:23348009-23348129 7.8e-06 51_[+4]_61 chr3L:10694073-10694193 7.8e-06 13_[+4]_99 chr2R:17850792-17850912 1.3e-05 26_[+4]_86 chr3L:16574548-16574668 1.3e-05 73_[+4]_39 chr2R:18125811-18125931 1.3e-05 37_[+4]_75 chr3R:18199735-18199855 1.3e-05 56_[+4]_56 chr3R:9052473-9052593 1.8e-05 57_[+4]_55 chr3R:16264010-16264130 1.8e-05 66_[+4]_46 chr3L:745712-745832 2.6e-05 99_[+4]_13 chr3L:10691219-10691339 2.6e-05 12_[+4]_100 chr2L:8123968-8124088 2.6e-05 33_[+4]_79 chr3R:20908776-20908896 3.6e-05 46_[+4]_66 chr2R:14302778-14302898 6e-05 27_[+4]_85 chr3L:8290063-8290183 6e-05 97_[+4]_15 chr3L:20786115-20786235 6e-05 76_[+4]_36 chr2L:5771323-5771443 6e-05 104_[+4]_8 chr3R:26130691-26130811 7.5e-05 54_[+4]_58 chr2R:11640895-11641015 7.5e-05 105_[+4]_7 chr2R:9712340-9712460 9.1e-05 86_[+4]_26 chr3L:17352927-17353047 9.1e-05 93_[+4]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGKGCTG width=8 seqs=23 chr2R:18660656-18660776 ( 37) CAGTGCTG 1 chr3R:21499619-21499739 ( 12) CAGTGCTG 1 chr2R:16170801-16170921 ( 40) CAGTGCTG 1 chr3R:23348009-23348129 ( 52) CAGTGCTG 1 chr3L:10694073-10694193 ( 14) CAGTGCTG 1 chr2R:17850792-17850912 ( 27) CAGGGCTG 1 chr3L:16574548-16574668 ( 74) CAGGGCTG 1 chr2R:18125811-18125931 ( 38) CAGGGCTG 1 chr3R:18199735-18199855 ( 57) CAGGGCTG 1 chr3R:9052473-9052593 ( 58) CAGCGCTG 1 chr3R:16264010-16264130 ( 67) CAGCGCTG 1 chr3L:745712-745832 ( 100) CAGTGCAG 1 chr3L:10691219-10691339 ( 13) CAGTGCAG 1 chr2L:8123968-8124088 ( 34) CAGTGCAG 1 chr3R:20908776-20908896 ( 47) CAGCGCAG 1 chr2R:14302778-14302898 ( 28) TAGTGCTG 1 chr3L:8290063-8290183 ( 98) TAGTGCTG 1 chr3L:20786115-20786235 ( 77) CATTGCTG 1 chr2L:5771323-5771443 ( 105) CATTGCTG 1 chr3R:26130691-26130811 ( 55) CATGGCTG 1 chr2R:11640895-11641015 ( 106) TAGGGCTG 1 chr2R:9712340-9712460 ( 87) CATCGCTG 1 chr3L:17352927-17353047 ( 94) TAGCGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 3.8e+000 -1117 208 -1117 -81 170 -1117 -1117 -1117 -1117 -1117 211 -81 -1117 15 45 78 -1117 -1117 238 -1117 -1117 235 -1117 -1117 -83 -1117 -1117 144 -1117 -1117 238 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 3.8e+000 0.000000 0.826087 0.000000 0.173913 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.826087 0.173913 0.000000 0.217391 0.260870 0.521739 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.173913 0.000000 0.000000 0.826087 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGKGCTG MEME-4 regular expression -------------------------------------------------------------------------------- CAG[TGC]GCTG -------------------------------------------------------------------------------- Time 25.77 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGGAG MEME-5 width = 8 sites = 2 llr = 25 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGGAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C :::::::: probability G aaaaaa:a matrix T :::::::: bits 2.4 ****** * 2.1 ****** * 1.9 ****** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22657070-22657190 42 2.97e-06 TTTGGGCTGA GGGGGGAG TTAGACAAAC chr3R:30889139-30889259 83 2.97e-06 TTAGCAATCA GGGGGGAG CATGGACTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22657070-22657190 3e-06 41_[+5]_71 chr3R:30889139-30889259 3e-06 82_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGGAG width=8 seqs=2 chr2R:22657070-22657190 ( 42) GGGGGGAG 1 chr3R:30889139-30889259 ( 83) GGGGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.3e+004 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 169 -765 -765 -765 -765 -765 238 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGAG MEME-5 regular expression -------------------------------------------------------------------------------- GGGGGGAG -------------------------------------------------------------------------------- Time 31.81 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15328244-15328364 8.09e-02 74_[+1(2.53e-05)]_38 chrX:13722117-13722237 3.44e-02 86_[+1(1.28e-05)]_16_[+1(1.28e-05)]_\ 2 chr3R:24876977-24877097 9.58e-02 71_[+1(2.53e-05)]_41 chr2L:15771146-15771266 2.26e-03 41_[+3(5.09e-05)]_13_[+1(1.28e-05)]_\ 50 chr3R:13710788-13710908 5.72e-04 72_[+1(2.53e-05)]_9_[+2(1.23e-05)]_\ 23 chrX:8251676-8251796 6.05e-03 5_[+1(1.28e-05)]_11_[+2(9.47e-05)]_\ 88 chrX:8757943-8758063 2.09e-02 62_[+1(1.28e-05)]_50 chr2R:12519048-12519168 1.08e-02 87_[+1(2.53e-05)]_25 chr2L:3711680-3711800 2.88e-05 39_[+2(1.23e-05)]_11_[+1(1.28e-05)]_\ 54 chr3L:15014487-15014607 4.24e-02 44_[+1(1.28e-05)]_68 chr2R:7785923-7786043 7.82e-02 36_[+1(1.28e-05)]_76 chr3L:8411754-8411874 1.39e-01 63_[+1(2.53e-05)]_49 chr2R:14871240-14871360 6.82e-02 65_[+1(4.50e-05)]_47 chr3R:31743446-31743566 3.29e-03 48_[+1(1.28e-05)]_64 chr2R:17536295-17536415 7.27e-02 42_[+1(2.53e-05)]_70 chr2R:19129543-19129663 4.63e-03 64_[+1(1.28e-05)]_48 chrX:11368141-11368261 4.60e-03 26_[+1(2.53e-05)]_18_[+3(8.25e-05)]_\ 60 chr3L:21175527-21175647 2.75e-02 6_[+1(2.53e-05)]_36_[+1(6.44e-05)]_\ 62 chr2L:6852055-6852175 7.34e-01 120 chrX:2170577-2170697 1.45e-02 62_[+1(2.53e-05)]_50 chr3R:31669149-31669269 6.06e-03 27_[+1(1.28e-05)]_34_[+1(1.28e-05)]_\ 43 chr3R:13780896-13781016 1.62e-03 58_[+1(2.53e-05)]_26_[+2(1.23e-05)]_\ 20 chr3R:10863194-10863314 7.12e-04 54_[+1(2.53e-05)]_6_[+2(1.23e-05)]_\ 44 chrX:16547573-16547693 1.03e-02 95_[+1(1.28e-05)]_17 chr2L:8123968-8124088 9.91e-05 20_[+2(5.65e-05)]_5_[+4(2.56e-05)]_\ 12_[+1(2.53e-05)]_59 chr2L:3713122-3713242 2.91e-03 20_[+2(1.23e-05)]_4_[+1(1.28e-05)]_\ 80 chr3L:17352927-17353047 5.14e-03 6_[+1(2.53e-05)]_79_[+4(9.10e-05)]_\ 19 chr3L:22872121-22872241 5.59e-02 62_[+1(1.28e-05)]_50 chr2L:6852266-6852386 8.56e-01 120 chr3L:21216833-21216953 1.34e-03 56_[+1(2.53e-05)]_56 chr2R:21522192-21522312 3.79e-02 66_[+1(2.53e-05)]_46 chrX:8265368-8265488 3.11e-02 76_[+1(2.53e-05)]_25_[+1(2.53e-05)]_\ 3 chr3R:30466879-30466999 4.50e-03 36_[+1(1.28e-05)]_76 chr3R:13782181-13782301 1.70e-03 65_[+1(2.53e-05)]_16_[+2(2.02e-05)]_\ 23 chr3L:21196706-21196826 1.75e-04 3_[+2(3.27e-05)]_36_[+1(4.50e-05)]_\ 65 chr2R:24743650-24743770 2.32e-03 30_[+1(1.28e-05)]_47_[+3(1.97e-05)]_\ 27 chr3L:5662164-5662284 1.98e-02 67_[+3(1.97e-05)]_30_[+3(8.25e-05)]_\ 7 chr2L:4459653-4459773 2.83e-01 4_[+1(4.50e-05)]_108 chr2L:8544234-8544354 9.15e-02 46_[+1(1.28e-05)]_66 chr2R:14981125-14981245 1.55e-02 24_[+1(2.53e-05)]_88 chr3R:18199735-18199855 5.10e-02 56_[+4(1.27e-05)]_56 chr2R:16202828-16202948 1.62e-03 97_[+1(4.50e-05)]_15 chr3R:12090740-12090860 1.43e-02 47_[+1(1.28e-05)]_65 chr3L:505902-506022 6.65e-02 120 chr3R:9986250-9986370 6.02e-02 96_[+1(2.53e-05)]_16 chr2L:13878966-13879086 4.63e-01 120 chr3L:21175732-21175852 9.21e-02 120 chr2L:6527114-6527234 8.53e-01 120 chr3R:15287870-15287990 4.41e-02 58_[+1(6.44e-05)]_54 chr3L:292233-292353 6.44e-02 120 chr2L:14011738-14011858 9.49e-01 120 chr2R:22403459-22403579 1.50e-04 15_[+1(2.53e-05)]_48_[+1(2.53e-05)]_\ 5_[+2(4.06e-05)]_3_[+5(9.73e-05)]_17 chr2R:22062504-22062624 1.45e-01 120 chr3L:17532456-17532576 4.75e-01 120 chr2L:2037572-2037692 1.97e-01 41_[+1(6.44e-05)]_71 chr2R:17272598-17272718 4.98e-02 30_[+2(6.16e-05)]_82 chr2R:23894863-23894983 9.85e-01 120 chr3R:31669349-31669469 5.99e-02 120 chr3L:18837971-18838091 5.51e-02 64_[+2(2.02e-05)]_48 chr3L:14549345-14549465 1.22e-01 120 chr3L:11107562-11107682 9.82e-01 120 chr3L:4521946-4522066 7.16e-02 97_[+3(5.09e-05)]_15 chr2R:12729334-12729454 2.81e-02 120 chr2R:15676015-15676135 1.24e-01 93_[+1(4.50e-05)]_19 chr3R:20908776-20908896 1.10e-02 46_[+4(3.56e-05)]_66 chr3R:10688948-10689068 9.26e-01 120 chr3L:10691219-10691339 8.34e-02 12_[+4(2.56e-05)]_100 chr3R:16309450-16309570 9.39e-01 120 chr3L:16045405-16045525 6.06e-01 120 chr3R:7492170-7492290 5.87e-01 120 chr3R:23927631-23927751 1.57e-02 84_[+3(8.25e-05)]_28 chr2R:21662444-21662564 4.50e-01 120 chr2L:13512275-13512395 7.39e-01 120 chr3L:10694073-10694193 2.37e-05 2_[+2(1.23e-05)]_3_[+4(7.76e-06)]_\ 21_[+4(7.76e-06)]_70 chr2L:7566811-7566931 2.66e-01 62_[+1(9.64e-05)]_50 chr3R:19879728-19879848 8.48e-02 120 chr3R:14741449-14741569 3.84e-02 120 chr2L:9509721-9509841 9.52e-01 120 chr2R:18605495-18605615 3.51e-02 37_[+2(4.84e-05)]_75 chr3R:14657124-14657244 7.31e-01 120 chr3L:20276727-20276847 7.81e-01 120 chr2R:9103152-9103272 1.52e-03 120 chr3R:21140655-21140775 1.07e-03 41_[+1(2.53e-05)]_1_[+3(1.97e-05)]_\ 62 chr3R:23348009-23348129 2.12e-02 51_[+4(7.76e-06)]_61 chr2L:17203974-17204094 7.14e-01 120 chr3L:17427184-17427304 4.65e-01 120 chr2R:23656651-23656771 4.83e-01 120 chr3L:20710668-20710788 4.21e-01 120 chr2L:7515547-7515667 8.21e-01 120 chr3R:9039552-9039672 5.43e-01 120 chr2R:20330592-20330712 7.80e-01 120 chr3R:22367238-22367358 3.29e-01 120 chr3R:11822460-11822580 4.31e-02 22_[+3(1.97e-05)]_90 chr3R:19011090-19011210 3.40e-01 120 chr3R:10203715-10203835 9.92e-02 120 chr3L:7862715-7862835 2.37e-01 120 chr4:1053857-1053977 9.25e-01 120 chr2R:15922079-15922199 7.74e-01 120 chrX:17175875-17175995 2.81e-02 92_[+3(8.25e-05)]_20 chr3L:745712-745832 8.45e-04 99_[+4(2.56e-05)]_13 chr3R:6170872-6170992 1.97e-01 120 chr3R:24585460-24585580 1.33e-01 120 chr2L:102303-102423 9.29e-02 82_[+3(1.97e-05)]_30 chr3L:1647442-1647562 1.41e-02 51_[+1(2.53e-05)]_61 chr3R:15792557-15792677 8.36e-01 120 chrX:15591784-15591904 8.25e-01 120 chr3R:18923382-18923502 9.07e-01 120 chr2R:16344422-16344542 5.95e-02 120 chr2R:6464957-6465077 8.43e-01 120 chrX:11368349-11368469 5.10e-03 89_[+2(2.02e-05)]_23 chr2L:19140951-19141071 3.53e-01 120 chr2R:14170465-14170585 5.20e-02 10_[+1(9.64e-05)]_102 chr3R:25215195-25215315 1.12e-01 7_[+3(1.97e-05)]_105 chr2L:9493455-9493575 9.90e-01 120 chr3R:27274619-27274739 8.32e-01 120 chr2R:22060840-22060960 3.12e-03 47_[+2(1.23e-05)]_11_[+3(5.09e-05)]_\ 46 chr2L:10850796-10850916 8.55e-01 120 chrX:17582839-17582959 3.05e-01 120 chr3R:29480081-29480201 6.12e-01 120 chr2L:5771323-5771443 1.18e-01 104_[+4(6.00e-05)]_8 chr2R:10196391-10196511 1.60e-01 120 chrX:20506033-20506153 1.10e-01 120 chr2R:7167967-7168087 9.59e-01 120 chr3R:26952324-26952444 7.66e-01 120 chr2L:7702466-7702586 9.95e-01 120 chr3R:7082019-7082139 9.82e-01 120 chr3L:19586090-19586210 7.19e-01 120 chr3R:18438871-18438991 4.23e-01 120 chr3L:16544354-16544474 9.42e-01 120 chr3R:30789526-30789646 7.47e-01 120 chr2L:17784754-17784874 3.48e-02 120 chr3L:8029459-8029579 2.54e-01 120 chrX:9120899-9121019 1.45e-01 82_[+5(9.73e-05)]_30 chrX:12889117-12889237 1.76e-02 81_[+1(8.06e-05)]_31 chr2R:16170801-16170921 4.64e-02 39_[+4(7.76e-06)]_73 chr3L:6264600-6264720 1.52e-01 120 chr3R:26235204-26235324 9.75e-01 120 chrX:801661-801781 2.06e-01 120 chr2R:9388743-9388863 9.70e-01 120 chr3R:10024169-10024289 5.18e-01 120 chr3L:6609346-6609466 9.23e-01 120 chr3L:9505232-9505352 1.50e-01 120 chr2L:12372605-12372725 8.70e-02 120 chr3R:14077114-14077234 4.02e-01 120 chr3R:11967598-11967718 1.80e-01 69_[+1(9.64e-05)]_43 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chr2L:10698131-10698251 2.40e-01 120 chr3L:21317987-21318107 4.68e-03 39_[+3(1.97e-05)]_73 chr2R:17850792-17850912 2.72e-05 16_[+2(3.27e-05)]_2_[+4(1.27e-05)]_\ 14_[+3(1.97e-05)]_[+3(5.09e-05)]_56 chr2L:15061544-15061664 4.40e-01 120 chr2R:18829736-18829856 3.69e-01 120 chr2L:13445598-13445718 2.14e-01 120 chr2R:11628149-11628269 4.43e-01 120 chr2R:17085663-17085783 7.73e-01 120 chr3R:10882221-10882341 3.91e-02 120 chr3L:11789924-11790044 3.13e-03 97_[+3(5.09e-05)]_3_[+1(2.53e-05)]_\ 4 chr3R:6373894-6374014 2.24e-02 14_[+2(1.23e-05)]_98 chrX:6621746-6621866 6.57e-02 120 chr2R:11640895-11641015 3.30e-03 41_[+2(4.84e-05)]_56_[+4(7.53e-05)]_\ 7 chr2R:18660656-18660776 2.98e-05 36_[+4(7.76e-06)]_60_[+5(9.73e-05)]_\ 8 chr3L:5789882-5790002 5.64e-01 120 chr2L:2494693-2494813 6.95e-01 120 chr2R:10303679-10303799 1.86e-01 108_[+2(6.16e-05)]_4 chr3R:18298312-18298432 3.11e-01 120 chr3R:26937575-26937695 5.15e-01 120 chr3R:23345080-23345200 7.74e-01 120 chr3R:8744348-8744468 9.80e-01 120 chr2L:20890092-20890212 3.83e-01 120 chr2L:10767944-10768064 2.43e-03 108_[+1(9.64e-05)]_4 chr2R:23574902-23575022 4.90e-01 120 chr2L:11199197-11199317 5.48e-01 120 chr3R:9052473-9052593 2.36e-02 57_[+4(1.77e-05)]_55 chr3L:7978916-7979036 1.50e-02 29_[+3(1.97e-05)]_83 chr2L:16275893-16276013 6.56e-01 120 chr3R:26130691-26130811 2.71e-01 54_[+4(7.53e-05)]_58 chrX:7333318-7333438 5.47e-01 120 chr3L:603900-604020 9.29e-02 120 chr2R:9426438-9426558 3.93e-02 120 chr2L:7027151-7027271 3.00e-01 120 chr2L:5798143-5798263 3.63e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************