******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4820.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:19765667-19765787 1.0000 120 chr2R:6871326-6871446 1.0000 120 chrX:2325985-2326105 1.0000 120 chr3L:16744078-16744198 1.0000 120 chrX:5421546-5421666 1.0000 120 chrX:11715107-11715227 1.0000 120 chr2R:17548691-17548811 1.0000 120 chr3L:21343388-21343508 1.0000 120 chrX:11146913-11147033 1.0000 120 chr2R:10122575-10122695 1.0000 120 chr3R:30056299-30056419 1.0000 120 chr3R:12406299-12406419 1.0000 120 chr2R:14698925-14699045 1.0000 120 chr3L:203660-203780 1.0000 120 chrX:11715338-11715458 1.0000 120 chrX:2652287-2652407 1.0000 120 chr3L:7361326-7361446 1.0000 120 chr3L:12223173-12223293 1.0000 120 chr2L:35552-35672 1.0000 120 chrX:10325219-10325339 1.0000 120 chrX:10325009-10325129 1.0000 120 chrX:18868229-18868349 1.0000 120 chr3R:6352113-6352233 1.0000 120 chr3L:9129637-9129757 1.0000 120 chrX:21315864-21315984 1.0000 120 chr2R:10122832-10122952 1.0000 120 chr3L:4178093-4178213 1.0000 120 chr2L:5055088-5055208 1.0000 120 chr2L:6133240-6133360 1.0000 120 chr3R:9869202-9869322 1.0000 120 chr3R:16857195-16857315 1.0000 120 chr3R:21606384-21606504 1.0000 120 chr3R:8139355-8139475 1.0000 120 chrX:5421751-5421871 1.0000 120 chr3L:13845387-13845507 1.0000 120 chrX:8275437-8275557 1.0000 120 chrX:7335623-7335743 1.0000 120 chrX:18363585-18363705 1.0000 120 chr2R:13015505-13015625 1.0000 120 chr2L:493415-493535 1.0000 120 chr2R:17545124-17545244 1.0000 120 chr3L:12058550-12058670 1.0000 120 chr3L:12037911-12038031 1.0000 120 chrX:2326186-2326306 1.0000 120 chr2R:11397350-11397470 1.0000 120 chr3R:15320074-15320194 1.0000 120 chr3L:16854899-16855019 1.0000 120 chr2R:20091340-20091460 1.0000 120 chr2L:21848218-21848338 1.0000 120 chr3R:22400354-22400474 1.0000 120 chr2L:14690954-14691074 1.0000 120 chr3L:15494278-15494398 1.0000 120 chr2R:7879193-7879313 1.0000 120 chr2L:3435208-3435328 1.0000 120 chr3L:16544358-16544478 1.0000 120 chr2L:7175970-7176090 1.0000 120 chrX:2518420-2518540 1.0000 120 chr2L:7635317-7635437 1.0000 120 chrX:5972192-5972312 1.0000 120 chr3R:9494391-9494511 1.0000 120 chrX:5973503-5973623 1.0000 120 chr3L:1216562-1216682 1.0000 120 chr3R:10628453-10628573 1.0000 120 chr3L:15794413-15794533 1.0000 120 chr2L:9918145-9918265 1.0000 120 chr3R:24817216-24817336 1.0000 120 chr2R:22402927-22403047 1.0000 120 chr3R:23921233-23921353 1.0000 120 chr2L:3675918-3676038 1.0000 120 chr2R:10066720-10066840 1.0000 120 chr3L:11303959-11304079 1.0000 120 chr3L:16017092-16017212 1.0000 120 chr3R:16718092-16718212 1.0000 120 chr3R:29717698-29717818 1.0000 120 chr3R:21111035-21111155 1.0000 120 chr4:709867-709987 1.0000 120 chr2R:21909962-21910082 1.0000 120 chr2L:7149045-7149165 1.0000 120 chr2L:15432389-15432509 1.0000 120 chr2R:20572570-20572690 1.0000 120 chr3L:11484620-11484740 1.0000 120 chrX:3096473-3096593 1.0000 120 chr2R:19676484-19676604 1.0000 120 chr2R:18963335-18963455 1.0000 120 chr2L:3600952-3601072 1.0000 120 chrX:20644087-20644207 1.0000 120 chr3R:23387097-23387217 1.0000 120 chr3R:10641444-10641564 1.0000 120 chr3L:13189376-13189496 1.0000 120 chr2R:10196373-10196493 1.0000 120 chr3R:11872845-11872965 1.0000 120 chr2L:7293546-7293666 1.0000 120 chr2L:4292706-4292826 1.0000 120 chr2L:1362368-1362488 1.0000 120 chr3L:15199386-15199506 1.0000 120 chrX:20631282-20631402 1.0000 120 chr3L:11285238-11285358 1.0000 120 chr2L:8746394-8746514 1.0000 120 chr2L:6694039-6694159 1.0000 120 chr2L:22536834-22536954 1.0000 120 chr3L:754701-754821 1.0000 120 chrX:19106982-19107102 1.0000 120 chr2L:11331776-11331896 1.0000 120 chr2L:14562371-14562491 1.0000 120 chr3R:17231590-17231710 1.0000 120 chr3R:6352998-6353118 1.0000 120 chr2L:7155006-7155126 1.0000 120 chr3R:6760821-6760941 1.0000 120 chr3R:6723911-6724031 1.0000 120 chr2L:7270441-7270561 1.0000 120 chr2L:7566822-7566942 1.0000 120 chr2L:14701615-14701735 1.0000 120 chr2L:4286234-4286354 1.0000 120 chr3L:6817090-6817210 1.0000 120 chr3L:5988774-5988894 1.0000 120 chr3R:23067512-23067632 1.0000 120 chr3L:11334150-11334270 1.0000 120 chrX:4581868-4581988 1.0000 120 chr2R:14305335-14305455 1.0000 120 chrX:771818-771938 1.0000 120 chr3R:21887626-21887746 1.0000 120 chr3R:29522290-29522410 1.0000 120 chr2R:23574918-23575038 1.0000 120 chr3L:16452472-16452592 1.0000 120 chr3L:15691287-15691407 1.0000 120 chr3R:10636210-10636330 1.0000 120 chr3L:11408882-11409002 1.0000 120 chr3L:6807633-6807753 1.0000 120 chrX:3288966-3289086 1.0000 120 chr3L:10661110-10661230 1.0000 120 chr3L:20630772-20630892 1.0000 120 chr3L:18272390-18272510 1.0000 120 chr3L:13197634-13197754 1.0000 120 chr3L:5922173-5922293 1.0000 120 chr3L:10337716-10337836 1.0000 120 chr2L:8610941-8611061 1.0000 120 chr2L:3587368-3587488 1.0000 120 chr2L:3852238-3852358 1.0000 120 chrX:11820274-11820394 1.0000 120 chr3L:3875077-3875197 1.0000 120 chrX:3068466-3068586 1.0000 120 chr2L:10986279-10986399 1.0000 120 chrX:1083297-1083417 1.0000 120 chr3L:18349423-18349543 1.0000 120 chr3R:21612969-21613089 1.0000 120 chr2L:8471903-8472023 1.0000 120 chr3L:2799151-2799271 1.0000 120 chr2L:6357086-6357206 1.0000 120 chr3L:4607806-4607926 1.0000 120 chr2L:7616975-7617095 1.0000 120 chr2L:20950773-20950893 1.0000 120 chr2L:20889983-20890103 1.0000 120 chrX:18525067-18525187 1.0000 120 chr3L:10745712-10745832 1.0000 120 chrX:2166253-2166373 1.0000 120 chrX:2978202-2978322 1.0000 120 chr3R:8849479-8849599 1.0000 120 chr2R:20326900-20327020 1.0000 120 chr3R:26014473-26014593 1.0000 120 chr3L:8751428-8751548 1.0000 120 chr3L:5857013-5857133 1.0000 120 chr3R:19627983-19628103 1.0000 120 chr3R:11617504-11617624 1.0000 120 chr3L:13929239-13929359 1.0000 120 chr3R:5613227-5613347 1.0000 120 chr3R:30812567-30812687 1.0000 120 chr3L:11551987-11552107 1.0000 120 chrX:10825464-10825584 1.0000 120 chr2L:10276690-10276810 1.0000 120 chr3R:14077162-14077282 1.0000 120 chr3R:15320280-15320400 1.0000 120 chr3L:8445175-8445295 1.0000 120 chr2L:14367324-14367444 1.0000 120 chr3L:10350772-10350892 1.0000 120 chr3R:31704677-31704797 1.0000 120 chr2L:7492001-7492121 1.0000 120 chr2R:20154030-20154150 1.0000 120 chr3L:15977718-15977838 1.0000 120 chr3R:21187067-21187187 1.0000 120 chrX:11548854-11548974 1.0000 120 chr2L:11417642-11417762 1.0000 120 chr3L:8395750-8395870 1.0000 120 chr3R:25174273-25174393 1.0000 120 chr2R:15381282-15381402 1.0000 120 chr3L:15532770-15532890 1.0000 120 chr2L:9594969-9595089 1.0000 120 chr2L:18921356-18921476 1.0000 120 chr3L:17669329-17669449 1.0000 120 chr2R:18451203-18451323 1.0000 120 chrX:5639253-5639373 1.0000 120 chr2L:3856466-3856586 1.0000 120 chr2L:13073919-13074039 1.0000 120 chrX:3690716-3690836 1.0000 120 chrX:10600682-10600802 1.0000 120 chr3L:13411170-13411290 1.0000 120 chrX:18921120-18921240 1.0000 120 chrX:12242502-12242622 1.0000 120 chr3L:14613881-14614001 1.0000 120 chr3R:8744348-8744468 1.0000 120 chr3R:17584160-17584280 1.0000 120 chr2L:8834907-8835027 1.0000 120 chr2R:21018365-21018485 1.0000 120 chr3L:7151946-7152066 1.0000 120 chr3R:22260368-22260488 1.0000 120 chr2L:10543601-10543721 1.0000 120 chrX:7617070-7617190 1.0000 120 chr3R:23356200-23356320 1.0000 120 chrX:2136560-2136680 1.0000 120 chrX:10067644-10067764 1.0000 120 chr3R:6818658-6818778 1.0000 120 chr3R:30413973-30414093 1.0000 120 chr2L:19517461-19517581 1.0000 120 chr2L:522858-522978 1.0000 120 chrX:19770273-19770393 1.0000 120 chrX:16854857-16854977 1.0000 120 chr3R:11368843-11368963 1.0000 120 chr2L:18345310-18345430 1.0000 120 chrX:12454482-12454602 1.0000 120 chr2R:9388597-9388717 1.0000 120 chr3L:13356189-13356309 1.0000 120 chr3L:9028168-9028288 1.0000 120 chr3R:21493576-21493696 1.0000 120 chr2L:8573084-8573204 1.0000 120 chr2L:15442363-15442483 1.0000 120 chr3L:12644438-12644558 1.0000 120 chr2R:22075278-22075398 1.0000 120 chr3L:6981837-6981957 1.0000 120 chr3L:1029744-1029864 1.0000 120 chr2L:5245777-5245897 1.0000 120 chr2L:3598584-3598704 1.0000 120 chr2L:11189198-11189318 1.0000 120 chrX:5285936-5286056 1.0000 120 chrX:3367425-3367545 1.0000 120 chr3L:745677-745797 1.0000 120 chr3R:26172174-26172294 1.0000 120 chr2L:9598432-9598552 1.0000 120 chr3L:6982041-6982161 1.0000 120 chr3R:16748665-16748785 1.0000 120 chr3R:26937539-26937659 1.0000 120 chr3L:14325432-14325552 1.0000 120 chr3R:27937882-27938002 1.0000 120 chr3L:2159039-2159159 1.0000 120 chr3L:14335973-14336093 1.0000 120 chr3R:14008983-14009103 1.0000 120 chr2R:21017524-21017644 1.0000 120 chr2L:1428414-1428534 1.0000 120 chr3R:13999666-13999786 1.0000 120 chr3R:25531978-25532098 1.0000 120 chr2L:12351095-12351215 1.0000 120 chr2R:18676509-18676629 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG4820/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4820.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.337 C 0.165 G 0.167 T 0.331 Background letter frequencies (from file dataset with add-one prior applied): A 0.337 C 0.165 G 0.167 T 0.331 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCATAAAC MEME-1 width = 8 sites = 23 llr = 225 E-value = 3.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCATAAAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:aaa: pos.-specific C :a:1:::8 probability G a::::::: matrix T :::9:::2 bits 2.6 ** 2.3 ** 2.1 ** 1.8 ** Relative 1.6 ** **** Entropy 1.3 ******** (14.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCATAAAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATAAAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17545124-17545244 97 1.94e-05 CGATTGCGTC GCATAAAC ATTCATTTTG chr2R:13015505-13015625 106 1.94e-05 ATTTGGAGAC GCATAAAC GTGGCAA chr2L:6133240-6133360 73 1.94e-05 TTTGTCTGTC GCATAAAC TGGATTTTCA chr3L:4178093-4178213 83 1.94e-05 AAAGTGCATC GCATAAAC GCAATAAATG chr3L:9129637-9129757 95 1.94e-05 GTTTTCCGCT GCATAAAC ACACACATAA chrX:18868229-18868349 22 1.94e-05 AGTGCGCCCC GCATAAAC GTAAAGCGCA chrX:10325219-10325339 97 1.94e-05 TTGTAGGCCT GCATAAAC TGCAGGCCAG chr3L:12223173-12223293 76 1.94e-05 AAATCCCTCG GCATAAAC CCCACCAACA chrX:2652287-2652407 82 1.94e-05 AAACCTTACT GCATAAAC GTACATAGCG chr2R:17548691-17548811 97 1.94e-05 GTATACCCCC GCATAAAC ATTTAGCCTT chrX:11715107-11715227 64 1.94e-05 TAAAGCGGAG GCATAAAC GCGGCTTTGT chrX:5421546-5421666 32 1.94e-05 TTCTATTTAC GCATAAAC GAATAAAAAG chr3L:16744078-16744198 88 1.94e-05 TACGCGCAAC GCATAAAC TTCATGATTA chr2R:6871326-6871446 88 1.94e-05 ATTGGCTGAC GCATAAAC GCGATCGGCG chrX:19765667-19765787 108 1.94e-05 AACTGGCCGC GCATAAAC GTTGC chr3L:15532770-15532890 7 2.91e-05 TAAAGT GCACAAAC AAAAATCATA chr3L:5922173-5922293 26 2.91e-05 AGAGTCGCCT GCACAAAC CTCATAAACA chr3R:26172174-26172294 28 6.80e-05 TTAGGATGAT GCATAAAT TATTACAAAT chrX:5285936-5286056 83 6.80e-05 Caattgaatt gcataaat gaataaatga chrX:3690716-3690836 38 6.80e-05 AGATACTATC GCATAAAT ATACAGCTTT chrX:11548854-11548974 84 6.80e-05 TTAAAACATT GCATAAAT CGTTTTTAGC chr3L:11484620-11484740 51 6.80e-05 TTTAACAATC GCATAAAT TGAGCTAAAT chr2L:5055088-5055208 63 7.76e-05 GAGCAGACGC GCGTAAAC CACCCCGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATAAAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17545124-17545244 1.9e-05 96_[+1]_16 chr2R:13015505-13015625 1.9e-05 105_[+1]_7 chr2L:6133240-6133360 1.9e-05 72_[+1]_40 chr3L:4178093-4178213 1.9e-05 82_[+1]_30 chr3L:9129637-9129757 1.9e-05 94_[+1]_18 chrX:18868229-18868349 1.9e-05 21_[+1]_91 chrX:10325219-10325339 1.9e-05 96_[+1]_16 chr3L:12223173-12223293 1.9e-05 75_[+1]_37 chrX:2652287-2652407 1.9e-05 81_[+1]_31 chr2R:17548691-17548811 1.9e-05 96_[+1]_16 chrX:11715107-11715227 1.9e-05 63_[+1]_49 chrX:5421546-5421666 1.9e-05 31_[+1]_81 chr3L:16744078-16744198 1.9e-05 87_[+1]_25 chr2R:6871326-6871446 1.9e-05 87_[+1]_25 chrX:19765667-19765787 1.9e-05 107_[+1]_5 chr3L:15532770-15532890 2.9e-05 6_[+1]_106 chr3L:5922173-5922293 2.9e-05 25_[+1]_87 chr3R:26172174-26172294 6.8e-05 27_[+1]_85 chrX:5285936-5286056 6.8e-05 82_[+1]_30 chrX:3690716-3690836 6.8e-05 37_[+1]_75 chrX:11548854-11548974 6.8e-05 83_[+1]_29 chr3L:11484620-11484740 6.8e-05 50_[+1]_62 chr2L:5055088-5055208 7.8e-05 62_[+1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATAAAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCATAAAC width=8 seqs=23 chr2R:17545124-17545244 ( 97) GCATAAAC 1 chr2R:13015505-13015625 ( 106) GCATAAAC 1 chr2L:6133240-6133360 ( 73) GCATAAAC 1 chr3L:4178093-4178213 ( 83) GCATAAAC 1 chr3L:9129637-9129757 ( 95) GCATAAAC 1 chrX:18868229-18868349 ( 22) GCATAAAC 1 chrX:10325219-10325339 ( 97) GCATAAAC 1 chr3L:12223173-12223293 ( 76) GCATAAAC 1 chrX:2652287-2652407 ( 82) GCATAAAC 1 chr2R:17548691-17548811 ( 97) GCATAAAC 1 chrX:11715107-11715227 ( 64) GCATAAAC 1 chrX:5421546-5421666 ( 32) GCATAAAC 1 chr3L:16744078-16744198 ( 88) GCATAAAC 1 chr2R:6871326-6871446 ( 88) GCATAAAC 1 chrX:19765667-19765787 ( 108) GCATAAAC 1 chr3L:15532770-15532890 ( 7) GCACAAAC 1 chr3L:5922173-5922293 ( 26) GCACAAAC 1 chr3R:26172174-26172294 ( 28) GCATAAAT 1 chrX:5285936-5286056 ( 83) GCATAAAT 1 chrX:3690716-3690836 ( 38) GCATAAAT 1 chrX:11548854-11548974 ( 84) GCATAAAT 1 chr3L:11484620-11484740 ( 51) GCATAAAT 1 chr2L:5055088-5055208 ( 63) GCGTAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATAAAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6641 E= 3.2e-003 -1117 -1117 258 -1117 -1117 260 -1117 -1117 150 -1117 -194 -1117 -1117 -92 -1117 146 157 -1117 -1117 -1117 157 -1117 -1117 -1117 157 -1117 -1117 -1117 -1117 225 -1117 -61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATAAAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 3.2e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.956522 0.000000 0.043478 0.000000 0.000000 0.086957 0.000000 0.913043 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.782609 0.000000 0.217391 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATAAAC MEME-1 regular expression -------------------------------------------------------------------------------- GCATAAA[CT] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTTATGC MEME-2 width = 8 sites = 17 llr = 176 E-value = 1.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTTATGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::9::: pos.-specific C :::1:::a probability G a::11:a: matrix T :aa9:a:: bits 2.6 * ** 2.3 * ** 2.1 * ** 1.8 * ** Relative 1.6 *** *** Entropy 1.3 *** **** (14.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTTTATGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTATGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22075278-22075398 91 1.86e-05 GATTTGTTAA GTTTATGC GCGAGTGTGA chrX:7617070-7617190 110 1.86e-05 AAAATATTTC GTTTATGC CAA chr3R:23921233-23921353 47 1.86e-05 GCCAATCAGG GTTTATGC GCTGCGCGTG chrX:2518420-2518540 6 1.86e-05 TCAAC GTTTATGC GCATGCTGTG chr2L:21848218-21848338 29 1.86e-05 GAGGACTTTC GTTTATGC GGGGGAAGAA chr3L:16854899-16855019 29 1.86e-05 ACGATATTAC GTTTATGC GGGCGATGGT chr3R:15320074-15320194 23 1.86e-05 GACTATTTTG GTTTATGC GGGTTCCTTA chrX:18363585-18363705 76 1.86e-05 CGGGCGACGG GTTTATGC CGTGATTTAT chrX:8275437-8275557 80 1.86e-05 GCTGATTTCG GTTTATGC GTGTTAGCTA chr3L:4178093-4178213 26 1.86e-05 GTTTGTTTTC GTTTATGC ACACGCGTGT chr3R:12406299-12406419 23 1.86e-05 GGCTATCGAA GTTTATGC GTAGTAGTTC chr2R:17548691-17548811 53 1.86e-05 CAATACAAAT GTTTATGC CGTTAATATT chrX:11715107-11715227 18 1.86e-05 ctgccgctgc GTTTATGC GCAGTGCGTC chrX:2325985-2326105 10 1.86e-05 GAGTGGTTC GTTTATGC GGCAGAAAGT chr3L:15199386-15199506 79 3.73e-05 GTTGTACAAA GTTGATGC TACAATTTTT chrX:2652287-2652407 8 3.73e-05 GTACTGC GTTCATGC AATGCACTAT chr3R:22260368-22260488 108 4.65e-05 GACCCCAACG GTTTGTGC AGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTATGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22075278-22075398 1.9e-05 90_[+2]_22 chrX:7617070-7617190 1.9e-05 109_[+2]_3 chr3R:23921233-23921353 1.9e-05 46_[+2]_66 chrX:2518420-2518540 1.9e-05 5_[+2]_107 chr2L:21848218-21848338 1.9e-05 28_[+2]_84 chr3L:16854899-16855019 1.9e-05 28_[+2]_84 chr3R:15320074-15320194 1.9e-05 22_[+2]_90 chrX:18363585-18363705 1.9e-05 75_[+2]_37 chrX:8275437-8275557 1.9e-05 79_[+2]_33 chr3L:4178093-4178213 1.9e-05 25_[+2]_87 chr3R:12406299-12406419 1.9e-05 22_[+2]_90 chr2R:17548691-17548811 1.9e-05 52_[+2]_60 chrX:11715107-11715227 1.9e-05 17_[+2]_95 chrX:2325985-2326105 1.9e-05 9_[+2]_103 chr3L:15199386-15199506 3.7e-05 78_[+2]_34 chrX:2652287-2652407 3.7e-05 7_[+2]_105 chr3R:22260368-22260488 4.7e-05 107_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTATGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTTATGC width=8 seqs=17 chr2R:22075278-22075398 ( 91) GTTTATGC 1 chrX:7617070-7617190 ( 110) GTTTATGC 1 chr3R:23921233-23921353 ( 47) GTTTATGC 1 chrX:2518420-2518540 ( 6) GTTTATGC 1 chr2L:21848218-21848338 ( 29) GTTTATGC 1 chr3L:16854899-16855019 ( 29) GTTTATGC 1 chr3R:15320074-15320194 ( 23) GTTTATGC 1 chrX:18363585-18363705 ( 76) GTTTATGC 1 chrX:8275437-8275557 ( 80) GTTTATGC 1 chr3L:4178093-4178213 ( 26) GTTTATGC 1 chr3R:12406299-12406419 ( 23) GTTTATGC 1 chr2R:17548691-17548811 ( 53) GTTTATGC 1 chrX:11715107-11715227 ( 18) GTTTATGC 1 chrX:2325985-2326105 ( 10) GTTTATGC 1 chr3L:15199386-15199506 ( 79) GTTGATGC 1 chrX:2652287-2652407 ( 8) GTTCATGC 1 chr3R:22260368-22260488 ( 108) GTTTGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTATGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 1.3e-001 -1073 -1073 258 -1073 -1073 -1073 -1073 159 -1073 -1073 -1073 159 -1073 -148 -150 141 148 -1073 -150 -1073 -1073 -1073 -1073 159 -1073 -1073 258 -1073 -1073 260 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTATGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.3e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.058824 0.058824 0.882353 0.941176 0.000000 0.058824 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTTATGC MEME-2 regular expression -------------------------------------------------------------------------------- GTTTATGC -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTGMG MEME-3 width = 8 sites = 35 llr = 301 E-value = 7.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGMG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:a:::52 pos.-specific C :a:8::41 probability G 7::21917 matrix T ::::91:: bits 2.6 2.3 * 2.1 * * 1.8 * * * Relative 1.6 ** * * Entropy 1.3 ****** * (12.4 bits) 1.0 ****** * 0.8 ****** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGAG consensus A G CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:6981837-6981957 23 2.33e-06 CACATACCAT GCACTGCG AGAAAATAGT chr3R:21493576-21493696 13 7.10e-06 CCGAGTTAGT GCACTGAG AGATCTAACC chr2L:7492001-7492121 15 7.10e-06 TATTAGCAAT GCACTGAG AAATATTTGT chr3L:10350772-10350892 36 7.10e-06 GGGGGCACAG GCACTGAG AAAAATATTT chr2L:14701615-14701735 1 7.10e-06 . GCACTGAG AAAAATATTT chr2R:21909962-21910082 31 7.10e-06 TGCAGTCAAG GCACTGAG AAAAATCTGG chr3L:4178093-4178213 62 9.46e-06 TTCATGAAAC GCAGTGCG TGAAAAGTGC chrX:11715107-11715227 26 9.46e-06 gcGTTTATGC GCAGTGCG TCATTACACG chr3R:14008983-14009103 5 1.18e-05 CAAT GCACTGGG AGAAATTGCG chrX:5973503-5973623 27 1.18e-05 CTACATATAT GCACTGGG AGAAATTCGA chr2R:22075278-22075398 46 1.65e-05 AACGCACGTC ACACTGCG ATTATGCGCA chrX:2166253-2166373 5 1.65e-05 CGCA ACACTGCG CGAAAATGTG chr2L:8610941-8611061 34 3.69e-05 GATACTAAAT ACACTGAG AAAGATGAAG chr2L:4292706-4292826 7 3.69e-05 AGAACT ACACTGAG CGCAAAATTA chr2L:5055088-5055208 48 3.69e-05 ATATAGGGTC ACACTGAG CAGACGCGCG chrX:2136560-2136680 39 3.92e-05 TGTTTTAACT GCACTGCC TACGTCGCCA chr2L:9594969-9595089 12 4.88e-05 GCTAGAGTGT GCACTGAA GAAAAATatt chr3R:14077162-14077282 98 4.88e-05 AAGGATTGTA GCACTGAA CCTTTTGAGA chr2R:20572570-20572690 73 4.88e-05 AATTAAAGAG GCACTGAA GATTCCTATG chr2L:13073919-13074039 100 5.34e-05 TTCCATTGGC GCACTTCG TCACTACTTG chr3L:21343388-21343508 27 5.34e-05 CATTCCGCCT GCACTTCG CGATAATCGC chrX:19765667-19765787 88 5.34e-05 TAAACTCGGC GCACTTCG AGAACTGGCC chr2L:5245777-5245897 75 7.36e-05 ATAATTTCTC GCAGTGCA TCATTTTCTG chr3R:10641444-10641564 112 7.36e-05 ACCTTTTTTC GCAGTGCA C chr2L:3587368-3587488 50 7.83e-05 TCAAGGAAAT GCACTGTG AGAAAATATA chr3R:22400354-22400474 42 9.37e-05 AACAAATGAT GCACTTAG CTGTCTTAGT chr3L:6982041-6982161 100 9.84e-05 CAGTGTCTGC GCGCTGAG TTTGGCACAT chr3R:16857195-16857315 110 9.84e-05 TATAAGAAAG GGACTGCG AAA chr3R:27937882-27938002 75 1.22e-04 ACCGTAATGC ACAGTGAG GCGAAGTGTT chr2L:3598584-3598704 9 1.22e-04 GCGGGATC ACACTGCA CGAAAAGAAA chr3L:16544358-16544478 44 1.22e-04 ATGCATGAGC ACAGTGAG TAATTAATAT chr2L:9598432-9598552 61 1.26e-04 GCGGTGGTCT GCACGGGG AGAAATGATC chr2L:8573084-8573204 107 1.26e-04 ATTTTTTCTC GCAGTGCC TTTCAG chrX:2978202-2978322 13 1.38e-04 AGTCGTGAGT ACACGGCG AGAAATACTT chr2R:17545124-17545244 73 1.38e-04 GTCGATAAAT GCAGTGAA ATTAATCGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6981837-6981957 2.3e-06 22_[+3]_90 chr3R:21493576-21493696 7.1e-06 12_[+3]_100 chr2L:7492001-7492121 7.1e-06 14_[+3]_98 chr3L:10350772-10350892 7.1e-06 35_[+3]_77 chr2L:14701615-14701735 7.1e-06 [+3]_112 chr2R:21909962-21910082 7.1e-06 30_[+3]_82 chr3L:4178093-4178213 9.5e-06 61_[+3]_51 chrX:11715107-11715227 9.5e-06 25_[+3]_87 chr3R:14008983-14009103 1.2e-05 4_[+3]_108 chrX:5973503-5973623 1.2e-05 26_[+3]_86 chr2R:22075278-22075398 1.7e-05 45_[+3]_67 chrX:2166253-2166373 1.7e-05 4_[+3]_108 chr2L:8610941-8611061 3.7e-05 33_[+3]_79 chr2L:4292706-4292826 3.7e-05 6_[+3]_106 chr2L:5055088-5055208 3.7e-05 47_[+3]_65 chrX:2136560-2136680 3.9e-05 38_[+3]_74 chr2L:9594969-9595089 4.9e-05 11_[+3]_101 chr3R:14077162-14077282 4.9e-05 97_[+3]_15 chr2R:20572570-20572690 4.9e-05 72_[+3]_40 chr2L:13073919-13074039 5.3e-05 99_[+3]_13 chr3L:21343388-21343508 5.3e-05 26_[+3]_86 chrX:19765667-19765787 5.3e-05 87_[+3]_25 chr2L:5245777-5245897 7.4e-05 74_[+3]_38 chr3R:10641444-10641564 7.4e-05 111_[+3]_1 chr2L:3587368-3587488 7.8e-05 49_[+3]_63 chr3R:22400354-22400474 9.4e-05 41_[+3]_71 chr3L:6982041-6982161 9.8e-05 99_[+3]_13 chr3R:16857195-16857315 9.8e-05 109_[+3]_3 chr3R:27937882-27938002 0.00012 74_[+3]_38 chr2L:3598584-3598704 0.00012 8_[+3]_104 chr3L:16544358-16544478 0.00012 43_[+3]_69 chr2L:9598432-9598552 0.00013 60_[+3]_52 chr2L:8573084-8573204 0.00013 106_[+3]_6 chrX:2978202-2978322 0.00014 12_[+3]_100 chr2R:17545124-17545244 0.00014 72_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGMG width=8 seqs=35 chr3L:6981837-6981957 ( 23) GCACTGCG 1 chr3R:21493576-21493696 ( 13) GCACTGAG 1 chr2L:7492001-7492121 ( 15) GCACTGAG 1 chr3L:10350772-10350892 ( 36) GCACTGAG 1 chr2L:14701615-14701735 ( 1) GCACTGAG 1 chr2R:21909962-21910082 ( 31) GCACTGAG 1 chr3L:4178093-4178213 ( 62) GCAGTGCG 1 chrX:11715107-11715227 ( 26) GCAGTGCG 1 chr3R:14008983-14009103 ( 5) GCACTGGG 1 chrX:5973503-5973623 ( 27) GCACTGGG 1 chr2R:22075278-22075398 ( 46) ACACTGCG 1 chrX:2166253-2166373 ( 5) ACACTGCG 1 chr2L:8610941-8611061 ( 34) ACACTGAG 1 chr2L:4292706-4292826 ( 7) ACACTGAG 1 chr2L:5055088-5055208 ( 48) ACACTGAG 1 chrX:2136560-2136680 ( 39) GCACTGCC 1 chr2L:9594969-9595089 ( 12) GCACTGAA 1 chr3R:14077162-14077282 ( 98) GCACTGAA 1 chr2R:20572570-20572690 ( 73) GCACTGAA 1 chr2L:13073919-13074039 ( 100) GCACTTCG 1 chr3L:21343388-21343508 ( 27) GCACTTCG 1 chrX:19765667-19765787 ( 88) GCACTTCG 1 chr2L:5245777-5245897 ( 75) GCAGTGCA 1 chr3R:10641444-10641564 ( 112) GCAGTGCA 1 chr2L:3587368-3587488 ( 50) GCACTGTG 1 chr3R:22400354-22400474 ( 42) GCACTTAG 1 chr3L:6982041-6982161 ( 100) GCGCTGAG 1 chr3R:16857195-16857315 ( 110) GGACTGCG 1 chr3R:27937882-27938002 ( 75) ACAGTGAG 1 chr2L:3598584-3598704 ( 9) ACACTGCA 1 chr3L:16544358-16544478 ( 44) ACAGTGAG 1 chr2L:9598432-9598552 ( 61) GCACGGGG 1 chr2L:8573084-8573204 ( 107) GCAGTGCC 1 chrX:2978202-2978322 ( 13) ACACGGCG 1 chr2R:17545124-17545244 ( 73) GCAGTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4775 E= 7.1e-001 -39 -1177 215 -1177 -1177 256 -254 -1177 153 -1177 -254 -1177 -1177 223 45 -1177 -1177 -1177 -154 151 -1177 -1177 241 -154 44 138 -96 -353 -75 -153 215 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 7.1e-001 0.257143 0.000000 0.742857 0.000000 0.000000 0.971429 0.028571 0.000000 0.971429 0.000000 0.028571 0.000000 0.000000 0.771429 0.228571 0.000000 0.000000 0.000000 0.057143 0.942857 0.000000 0.000000 0.885714 0.114286 0.457143 0.428571 0.085714 0.028571 0.200000 0.057143 0.742857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGMG MEME-3 regular expression -------------------------------------------------------------------------------- [GA]CA[CG]TG[AC][GA] -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCRGRGC MEME-4 width = 8 sites = 16 llr = 158 E-value = 1.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCRGRGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::6:4:: pos.-specific C :8a:311a probability G 92:4849: matrix T :::::1:: bits 2.6 * * 2.3 * * 2.1 * ** 1.8 *** * ** Relative 1.6 *** * ** Entropy 1.3 *** * ** (14.2 bits) 1.0 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCAGGGC consensus GCA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGRGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5285936-5286056 15 1.76e-06 CGCTTCGTTT GCCAGGGC ATATTTTTTT chr3L:17669329-17669449 48 1.76e-06 GATATTTAAA GCCAGGGC TGTCATTTCT chr3L:12644438-12644558 73 5.89e-06 CTAATTTTCA GCCAGAGC AGAGGCTATC chr3R:30056299-30056419 100 5.89e-06 TCTTTCGAGT GCCAGAGC AACTGCACGA chrX:5639253-5639373 94 7.05e-06 TCAGTGTAAC GCCACGGC ATCTAAGGAT chr3L:6981837-6981957 4 1.11e-05 TTA GCCGGGCC ACACATACCA chrX:2326186-2326306 51 1.23e-05 GTGAGTGCGT GCCGCAGC AGCGCTACTA chrX:3068466-3068586 102 1.70e-05 ATTGTTTTCT GCCAGTGC AGCGCACACA chr2L:1362368-1362488 60 1.70e-05 TCGCACTTCT GCCAGCGC CATCTGTTGA chrX:18363585-18363705 59 2.05e-05 TAAGCGCTTG GGCGGAGC GGGCGACGGG chr2L:35552-35672 58 2.05e-05 CGCCGAGTTG GGCGGAGC GGTGTAGAAT chrX:2136560-2136680 88 2.47e-05 GCTCCACTGT GGCGCGGC ATCACTTTTT chr2L:9918145-9918265 42 2.82e-05 AACGTCAAAA ACCAGGGC TGCAGGCTGG chr2R:17548691-17548811 2 2.82e-05 C ACCAGGGC TGCAAGATCA chr3L:10337716-10337836 53 3.40e-05 ATCTCAACTC GCCAGACC TTTGACACTT chrX:11715107-11715227 10 3.40e-05 atcgcctct gccgctgc GTTTATGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGRGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5285936-5286056 1.8e-06 14_[+4]_98 chr3L:17669329-17669449 1.8e-06 47_[+4]_65 chr3L:12644438-12644558 5.9e-06 72_[+4]_40 chr3R:30056299-30056419 5.9e-06 99_[+4]_13 chrX:5639253-5639373 7.1e-06 93_[+4]_19 chr3L:6981837-6981957 1.1e-05 3_[+4]_109 chrX:2326186-2326306 1.2e-05 50_[+4]_62 chrX:3068466-3068586 1.7e-05 101_[+4]_11 chr2L:1362368-1362488 1.7e-05 59_[+4]_53 chrX:18363585-18363705 2.1e-05 58_[+4]_54 chr2L:35552-35672 2.1e-05 57_[+4]_55 chrX:2136560-2136680 2.5e-05 87_[+4]_25 chr2L:9918145-9918265 2.8e-05 41_[+4]_71 chr2R:17548691-17548811 2.8e-05 1_[+4]_111 chr3L:10337716-10337836 3.4e-05 52_[+4]_60 chrX:11715107-11715227 3.4e-05 9_[+4]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGRGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCRGRGC width=8 seqs=16 chrX:5285936-5286056 ( 15) GCCAGGGC 1 chr3L:17669329-17669449 ( 48) GCCAGGGC 1 chr3L:12644438-12644558 ( 73) GCCAGAGC 1 chr3R:30056299-30056419 ( 100) GCCAGAGC 1 chrX:5639253-5639373 ( 94) GCCACGGC 1 chr3L:6981837-6981957 ( 4) GCCGGGCC 1 chrX:2326186-2326306 ( 51) GCCGCAGC 1 chrX:3068466-3068586 ( 102) GCCAGTGC 1 chr2L:1362368-1362488 ( 60) GCCAGCGC 1 chrX:18363585-18363705 ( 59) GGCGGAGC 1 chr2L:35552-35672 ( 58) GGCGGAGC 1 chrX:2136560-2136680 ( 88) GGCGCGGC 1 chr2L:9918145-9918265 ( 42) ACCAGGGC 1 chr2R:17548691-17548811 ( 2) ACCAGGGC 1 chr3L:10337716-10337836 ( 53) GCCAGACC 1 chrX:11715107-11715227 ( 10) GCCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGRGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 1.9e+002 -143 -1064 239 -1064 -1064 230 17 -1064 -1064 260 -1064 -1064 89 -1064 117 -1064 -1064 60 217 -1064 15 -140 139 -141 -1064 -40 239 -1064 -1064 260 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGRGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.9e+002 0.125000 0.000000 0.875000 0.000000 0.000000 0.812500 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.250000 0.750000 0.000000 0.375000 0.062500 0.437500 0.125000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGRGC MEME-4 regular expression -------------------------------------------------------------------------------- GCC[AG][GC][GA]GC -------------------------------------------------------------------------------- Time 26.04 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGCCCC MEME-5 width = 8 sites = 2 llr = 27 E-value = 5.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a:aaaa probability G :a:a:::: matrix T a::::::: bits 2.6 ******* 2.3 ******* 2.1 ******* 1.8 ******* Relative 1.6 ******** Entropy 1.3 ******** (19.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCGCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5972192-5972312 68 1.13e-06 GCACCTAAGG TGCGCCCC TTAAGAAAAC chrX:18868229-18868349 14 1.13e-06 GTTCGCCAAG TGCGCCCC GCATAAACGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5972192-5972312 1.1e-06 67_[+5]_45 chrX:18868229-18868349 1.1e-06 13_[+5]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGCCCC width=8 seqs=2 chrX:5972192-5972312 ( 68) TGCGCCCC 1 chrX:18868229-18868349 ( 14) TGCGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.0e+003 -765 -765 -765 159 -765 -765 258 -765 -765 260 -765 -765 -765 -765 258 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.0e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCCCC MEME-5 regular expression -------------------------------------------------------------------------------- TGCGCCCC -------------------------------------------------------------------------------- Time 32.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19765667-19765787 5.80e-04 87_[+3(5.34e-05)]_12_[+1(1.94e-05)]_\ 5 chr2R:6871326-6871446 3.99e-03 87_[+1(1.94e-05)]_25 chrX:2325985-2326105 1.36e-02 9_[+2(1.86e-05)]_103 chr3L:16744078-16744198 1.69e-02 87_[+1(1.94e-05)]_25 chrX:5421546-5421666 1.05e-02 31_[+1(1.94e-05)]_81 chrX:11715107-11715227 8.71e-08 9_[+4(3.40e-05)]_[+2(1.86e-05)]_\ [+3(9.46e-06)]_30_[+1(1.94e-05)]_49 chr2R:17548691-17548811 1.05e-05 1_[+4(2.82e-05)]_43_[+2(1.86e-05)]_\ 36_[+1(1.94e-05)]_16 chr3L:21343388-21343508 6.72e-04 26_[+3(5.34e-05)]_86 chrX:11146913-11147033 1.65e-01 120 chr2R:10122575-10122695 2.08e-01 120 chr3R:30056299-30056419 1.03e-04 67_[+5(4.32e-05)]_24_[+4(5.89e-06)]_\ 13 chr3R:12406299-12406419 6.72e-02 22_[+2(1.86e-05)]_90 chr2R:14698925-14699045 6.79e-01 120 chr3L:203660-203780 2.25e-01 120 chrX:11715338-11715458 1.82e-01 120 chrX:2652287-2652407 1.52e-03 7_[+2(3.73e-05)]_66_[+1(1.94e-05)]_\ 31 chr3L:7361326-7361446 1.30e-01 120 chr3L:12223173-12223293 4.65e-02 75_[+1(1.94e-05)]_37 chr2L:35552-35672 1.44e-03 57_[+4(2.05e-05)]_55 chrX:10325219-10325339 4.04e-03 96_[+1(1.94e-05)]_16 chrX:10325009-10325129 2.40e-01 120 chrX:18868229-18868349 2.49e-06 13_[+5(1.13e-06)]_[+1(1.94e-05)]_91 chr3R:6352113-6352233 4.34e-01 120 chr3L:9129637-9129757 5.92e-03 94_[+1(1.94e-05)]_18 chrX:21315864-21315984 8.56e-01 120 chr2R:10122832-10122952 9.04e-01 120 chr3L:4178093-4178213 4.21e-06 25_[+2(1.86e-05)]_28_[+3(9.46e-06)]_\ 13_[+1(1.94e-05)]_30 chr2L:5055088-5055208 4.38e-04 47_[+3(3.69e-05)]_7_[+1(7.76e-05)]_\ 50 chr2L:6133240-6133360 1.74e-01 72_[+1(1.94e-05)]_40 chr3R:9869202-9869322 7.73e-01 120 chr3R:16857195-16857315 1.72e-03 109_[+3(9.84e-05)]_3 chr3R:21606384-21606504 1.54e-01 120 chr3R:8139355-8139475 3.40e-02 120 chrX:5421751-5421871 3.98e-01 120 chr3L:13845387-13845507 3.36e-03 34_[+5(4.32e-05)]_78 chrX:8275437-8275557 1.47e-02 79_[+2(1.86e-05)]_33 chrX:7335623-7335743 7.04e-01 120 chrX:18363585-18363705 1.07e-03 58_[+4(2.05e-05)]_9_[+2(1.86e-05)]_\ 37 chr2R:13015505-13015625 1.24e-01 105_[+1(1.94e-05)]_7 chr2L:493415-493535 6.84e-01 120 chr2R:17545124-17545244 2.85e-03 96_[+1(1.94e-05)]_16 chr3L:12058550-12058670 8.32e-01 120 chr3L:12037911-12038031 8.15e-01 120 chrX:2326186-2326306 6.02e-03 50_[+4(1.23e-05)]_62 chr2R:11397350-11397470 7.68e-02 120 chr3R:15320074-15320194 8.00e-02 22_[+2(1.86e-05)]_90 chr3L:16854899-16855019 1.19e-01 28_[+2(1.86e-05)]_84 chr2R:20091340-20091460 2.39e-01 120 chr2L:21848218-21848338 6.28e-02 28_[+2(1.86e-05)]_84 chr3R:22400354-22400474 2.02e-02 41_[+3(9.37e-05)]_71 chr2L:14690954-14691074 6.45e-01 120 chr3L:15494278-15494398 9.21e-02 120 chr2R:7879193-7879313 8.07e-01 120 chr2L:3435208-3435328 5.71e-01 120 chr3L:16544358-16544478 1.53e-01 120 chr2L:7175970-7176090 7.13e-01 120 chrX:2518420-2518540 1.78e-02 5_[+2(1.86e-05)]_107 chr2L:7635317-7635437 8.16e-01 120 chrX:5972192-5972312 4.23e-04 67_[+5(1.13e-06)]_45 chr3R:9494391-9494511 9.41e-01 120 chrX:5973503-5973623 6.45e-02 26_[+3(1.18e-05)]_86 chr3L:1216562-1216682 2.52e-01 120 chr3R:10628453-10628573 7.08e-01 120 chr3L:15794413-15794533 9.87e-01 120 chr2L:9918145-9918265 8.92e-03 41_[+4(2.82e-05)]_71 chr3R:24817216-24817336 6.00e-01 120 chr2R:22402927-22403047 1.61e-01 55_[+2(5.58e-05)]_57 chr3R:23921233-23921353 8.17e-05 46_[+2(1.86e-05)]_66 chr2L:3675918-3676038 4.58e-01 120 chr2R:10066720-10066840 1.50e-01 120 chr3L:11303959-11304079 3.87e-01 120 chr3L:16017092-16017212 9.32e-01 120 chr3R:16718092-16718212 5.46e-01 120 chr3R:29717698-29717818 2.98e-01 120 chr3R:21111035-21111155 1.43e-01 120 chr4:709867-709987 1.56e-01 120 chr2R:21909962-21910082 9.24e-03 30_[+3(7.10e-06)]_82 chr2L:7149045-7149165 5.20e-01 120 chr2L:15432389-15432509 7.91e-01 120 chr2R:20572570-20572690 1.48e-01 72_[+3(4.88e-05)]_40 chr3L:11484620-11484740 1.90e-01 50_[+1(6.80e-05)]_62 chrX:3096473-3096593 9.98e-01 120 chr2R:19676484-19676604 8.42e-01 120 chr2R:18963335-18963455 2.06e-01 120 chr2L:3600952-3601072 5.10e-01 120 chrX:20644087-20644207 7.33e-01 120 chr3R:23387097-23387217 9.60e-01 120 chr3R:10641444-10641564 3.52e-02 111_[+3(7.36e-05)]_1 chr3L:13189376-13189496 4.54e-01 120 chr2R:10196373-10196493 2.02e-01 120 chr3R:11872845-11872965 8.88e-01 120 chr2L:7293546-7293666 3.07e-01 120 chr2L:4292706-4292826 8.94e-02 6_[+3(3.69e-05)]_106 chr2L:1362368-1362488 7.81e-03 59_[+4(1.70e-05)]_53 chr3L:15199386-15199506 3.45e-02 78_[+2(3.73e-05)]_34 chrX:20631282-20631402 9.93e-01 120 chr3L:11285238-11285358 9.58e-01 120 chr2L:8746394-8746514 9.61e-01 120 chr2L:6694039-6694159 9.77e-01 120 chr2L:22536834-22536954 7.79e-01 120 chr3L:754701-754821 9.83e-01 120 chrX:19106982-19107102 5.45e-01 120 chr2L:11331776-11331896 8.86e-01 120 chr2L:14562371-14562491 8.43e-01 120 chr3R:17231590-17231710 4.94e-01 120 chr3R:6352998-6353118 4.46e-01 120 chr2L:7155006-7155126 9.29e-01 120 chr3R:6760821-6760941 6.06e-01 120 chr3R:6723911-6724031 9.47e-01 120 chr2L:7270441-7270561 2.92e-01 120 chr2L:7566822-7566942 9.00e-01 120 chr2L:14701615-14701735 1.61e-03 [+3(7.10e-06)]_29_[+2(5.58e-05)]_75 chr2L:4286234-4286354 9.94e-01 120 chr3L:6817090-6817210 5.40e-01 120 chr3L:5988774-5988894 2.82e-01 120 chr3R:23067512-23067632 9.89e-01 120 chr3L:11334150-11334270 9.85e-01 120 chrX:4581868-4581988 9.86e-01 120 chr2R:14305335-14305455 5.26e-01 120 chrX:771818-771938 2.77e-01 120 chr3R:21887626-21887746 6.29e-01 120 chr3R:29522290-29522410 2.91e-01 120 chr2R:23574918-23575038 6.34e-01 120 chr3L:16452472-16452592 9.94e-01 120 chr3L:15691287-15691407 9.08e-01 120 chr3R:10636210-10636330 2.03e-01 120 chr3L:11408882-11409002 8.41e-01 120 chr3L:6807633-6807753 9.15e-01 120 chrX:3288966-3289086 7.69e-03 120 chr3L:10661110-10661230 8.91e-01 120 chr3L:20630772-20630892 8.36e-01 120 chr3L:18272390-18272510 8.28e-01 120 chr3L:13197634-13197754 3.38e-01 120 chr3L:5922173-5922293 1.03e-02 25_[+1(2.91e-05)]_87 chr3L:10337716-10337836 7.95e-02 52_[+4(3.40e-05)]_60 chr2L:8610941-8611061 1.15e-02 33_[+3(3.69e-05)]_79 chr2L:3587368-3587488 2.61e-01 49_[+3(7.83e-05)]_63 chr2L:3852238-3852358 3.80e-01 120 chrX:11820274-11820394 5.43e-01 120 chr3L:3875077-3875197 3.36e-01 120 chrX:3068466-3068586 7.30e-03 101_[+4(1.70e-05)]_11 chr2L:10986279-10986399 6.79e-01 120 chrX:1083297-1083417 5.49e-01 120 chr3L:18349423-18349543 4.20e-01 120 chr3R:21612969-21613089 6.30e-01 120 chr2L:8471903-8472023 1.29e-01 120 chr3L:2799151-2799271 9.97e-01 120 chr2L:6357086-6357206 5.27e-01 120 chr3L:4607806-4607926 4.52e-01 120 chr2L:7616975-7617095 6.11e-01 120 chr2L:20950773-20950893 1.71e-01 120 chr2L:20889983-20890103 1.63e-01 120 chrX:18525067-18525187 4.61e-01 120 chr3L:10745712-10745832 8.70e-01 120 chrX:2166253-2166373 2.00e-03 4_[+3(1.65e-05)]_108 chrX:2978202-2978322 4.07e-01 120 chr3R:8849479-8849599 2.09e-01 120 chr2R:20326900-20327020 4.38e-01 120 chr3R:26014473-26014593 1.22e-01 120 chr3L:8751428-8751548 9.34e-01 120 chr3L:5857013-5857133 9.92e-01 120 chr3R:19627983-19628103 9.03e-01 120 chr3R:11617504-11617624 3.46e-01 120 chr3L:13929239-13929359 8.84e-01 120 chr3R:5613227-5613347 1.07e-01 120 chr3R:30812567-30812687 4.45e-01 120 chr3L:11551987-11552107 3.48e-01 120 chrX:10825464-10825584 7.90e-01 120 chr2L:10276690-10276810 1.55e-01 120 chr3R:14077162-14077282 1.18e-01 97_[+3(4.88e-05)]_15 chr3R:15320280-15320400 8.19e-01 120 chr3L:8445175-8445295 1.00e+00 120 chr2L:14367324-14367444 9.53e-01 120 chr3L:10350772-10350892 5.29e-03 35_[+3(7.10e-06)]_77 chr3R:31704677-31704797 9.53e-01 120 chr2L:7492001-7492121 7.98e-02 14_[+3(7.10e-06)]_98 chr2R:20154030-20154150 4.77e-01 120 chr3L:15977718-15977838 9.96e-01 120 chr3R:21187067-21187187 4.52e-01 120 chrX:11548854-11548974 5.77e-02 83_[+1(6.80e-05)]_29 chr2L:11417642-11417762 2.59e-01 120 chr3L:8395750-8395870 8.12e-01 120 chr3R:25174273-25174393 4.61e-01 120 chr2R:15381282-15381402 9.36e-01 120 chr3L:15532770-15532890 2.10e-01 6_[+1(2.91e-05)]_106 chr2L:9594969-9595089 8.20e-02 11_[+3(4.88e-05)]_101 chr2L:18921356-18921476 9.83e-01 120 chr3L:17669329-17669449 1.55e-02 47_[+4(1.76e-06)]_65 chr2R:18451203-18451323 7.24e-02 120 chrX:5639253-5639373 9.40e-03 93_[+4(7.05e-06)]_19 chr2L:3856466-3856586 9.21e-01 120 chr2L:13073919-13074039 6.32e-02 99_[+3(5.34e-05)]_13 chrX:3690716-3690836 9.98e-02 37_[+1(6.80e-05)]_75 chrX:10600682-10600802 7.27e-01 120 chr3L:13411170-13411290 8.68e-01 120 chrX:18921120-18921240 3.43e-02 120 chrX:12242502-12242622 3.34e-01 120 chr3L:14613881-14614001 1.06e-01 120 chr3R:8744348-8744468 8.84e-01 120 chr3R:17584160-17584280 8.75e-01 120 chr2L:8834907-8835027 3.79e-01 120 chr2R:21018365-21018485 5.20e-01 120 chr3L:7151946-7152066 9.52e-01 120 chr3R:22260368-22260488 2.51e-03 94_[+5(4.32e-05)]_5_[+2(4.65e-05)]_\ 5 chr2L:10543601-10543721 4.45e-01 120 chrX:7617070-7617190 1.11e-02 109_[+2(1.86e-05)]_3 chr3R:23356200-23356320 1.78e-01 120 chrX:2136560-2136680 1.56e-03 38_[+3(3.92e-05)]_41_[+4(2.47e-05)]_\ 25 chrX:10067644-10067764 2.39e-01 120 chr3R:6818658-6818778 3.59e-01 120 chr3R:30413973-30414093 6.88e-01 120 chr2L:19517461-19517581 7.71e-02 120 chr2L:522858-522978 9.98e-01 120 chrX:19770273-19770393 7.40e-01 120 chrX:16854857-16854977 7.10e-01 120 chr3R:11368843-11368963 6.01e-01 120 chr2L:18345310-18345430 5.41e-01 120 chrX:12454482-12454602 5.03e-02 120 chr2R:9388597-9388717 9.51e-01 120 chr3L:13356189-13356309 3.03e-01 120 chr3L:9028168-9028288 5.49e-01 120 chr3R:21493576-21493696 1.21e-02 12_[+3(7.10e-06)]_100 chr2L:8573084-8573204 4.20e-02 120 chr2L:15442363-15442483 9.92e-01 120 chr3L:12644438-12644558 3.78e-02 72_[+4(5.89e-06)]_40 chr2R:22075278-22075398 2.18e-03 45_[+3(1.65e-05)]_37_[+2(1.86e-05)]_\ 22 chr3L:6981837-6981957 1.29e-04 3_[+4(1.11e-05)]_11_[+3(2.33e-06)]_\ 90 chr3L:1029744-1029864 6.34e-01 120 chr2L:5245777-5245897 5.09e-02 74_[+3(7.36e-05)]_38 chr2L:3598584-3598704 1.16e-01 120 chr2L:11189198-11189318 8.99e-01 120 chrX:5285936-5286056 1.28e-03 14_[+4(1.76e-06)]_60_[+1(6.80e-05)]_\ 30 chrX:3367425-3367545 9.02e-01 120 chr3L:745677-745797 5.41e-01 120 chr3R:26172174-26172294 4.35e-02 27_[+1(6.80e-05)]_85 chr2L:9598432-9598552 4.60e-02 120 chr3L:6982041-6982161 3.81e-02 99_[+3(9.84e-05)]_13 chr3R:16748665-16748785 2.64e-01 120 chr3R:26937539-26937659 7.18e-01 120 chr3L:14325432-14325552 3.68e-01 120 chr3R:27937882-27938002 8.32e-02 120 chr3L:2159039-2159159 8.29e-01 120 chr3L:14335973-14336093 8.04e-01 120 chr3R:14008983-14009103 1.86e-02 4_[+3(1.18e-05)]_108 chr2R:21017524-21017644 6.01e-01 120 chr2L:1428414-1428534 5.29e-01 120 chr3R:13999666-13999786 8.42e-01 120 chr3R:25531978-25532098 8.22e-02 120 chr2L:12351095-12351215 4.18e-01 120 chr2R:18676509-18676629 7.66e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************