******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4707.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:23547332-23547452 1.0000 120 chr3L:6919314-6919434 1.0000 120 chrX:5970801-5970921 1.0000 120 chr3L:16563477-16563597 1.0000 120 chr3L:21878724-21878844 1.0000 120 chr2R:7724037-7724157 1.0000 120 chr2L:16415525-16415645 1.0000 120 chr2R:22532130-22532250 1.0000 120 chr3R:15410599-15410719 1.0000 120 chr2R:6119627-6119747 1.0000 120 chr2L:21632164-21632284 1.0000 120 chr2R:14014995-14015115 1.0000 120 chr2L:16707020-16707140 1.0000 120 chrX:17742068-17742188 1.0000 120 chr3R:7076439-7076559 1.0000 120 chrX:17832244-17832364 1.0000 120 chr2L:17541525-17541645 1.0000 120 chr3L:15853491-15853611 1.0000 120 chr3L:2882495-2882615 1.0000 120 chrX:3475188-3475308 1.0000 120 chrX:5690752-5690872 1.0000 120 chr2L:20097892-20098012 1.0000 120 chr3L:22276150-22276270 1.0000 120 chrX:7735324-7735444 1.0000 120 chrX:10234059-10234179 1.0000 120 chr3R:15580562-15580682 1.0000 120 chr3R:16893463-16893583 1.0000 120 chr3L:10906415-10906535 1.0000 120 chr3L:1488617-1488737 1.0000 120 chrX:16595648-16595768 1.0000 120 chrX:1209638-1209758 1.0000 120 chr2L:8291956-8292076 1.0000 120 chr3R:21471088-21471208 1.0000 120 chr3R:20561024-20561144 1.0000 120 chr2L:12346276-12346396 1.0000 120 chr3R:18371514-18371634 1.0000 120 chr2R:21534892-21535012 1.0000 120 chr3R:9480723-9480843 1.0000 120 chr2R:16921491-16921611 1.0000 120 chrX:18246959-18247079 1.0000 120 chrX:18137615-18137735 1.0000 120 chrX:15553558-15553678 1.0000 120 chr3L:14122167-14122287 1.0000 120 chr2R:15912969-15913089 1.0000 120 chr3R:10638760-10638880 1.0000 120 chr3R:18104450-18104570 1.0000 120 chrX:13303901-13304021 1.0000 120 chr3R:15600250-15600370 1.0000 120 chr2R:8659036-8659156 1.0000 120 chr3L:17563284-17563404 1.0000 120 chrX:18207740-18207860 1.0000 120 chrX:277971-278091 1.0000 120 chr2R:6156281-6156401 1.0000 120 chr3L:16896587-16896707 1.0000 120 chrX:8674797-8674917 1.0000 120 chr3L:16016883-16017003 1.0000 120 chr3R:26036200-26036320 1.0000 120 chr3L:11369710-11369830 1.0000 120 chr3R:10624314-10624434 1.0000 120 chr3R:8712130-8712250 1.0000 120 chrX:15803001-15803121 1.0000 120 chrX:15709826-15709946 1.0000 120 chrX:12575406-12575526 1.0000 120 chr2R:14009798-14009918 1.0000 120 chr3L:7529769-7529889 1.0000 120 chrX:19751806-19751926 1.0000 120 chr3L:3352618-3352738 1.0000 120 chrX:17790579-17790699 1.0000 120 chr2L:21329670-21329790 1.0000 120 chr2R:14903826-14903946 1.0000 120 chr2L:13511307-13511427 1.0000 120 chr2R:7249906-7250026 1.0000 120 chr2L:2901202-2901322 1.0000 120 chr2L:6250060-6250180 1.0000 120 chr2R:21897811-21897931 1.0000 120 chr3R:16878605-16878725 1.0000 120 chr3R:30919802-30919922 1.0000 120 chr2L:2364335-2364455 1.0000 120 chrX:15803845-15803965 1.0000 120 chrX:8884133-8884253 1.0000 120 chr3L:11217941-11218061 1.0000 120 chr3R:4607705-4607825 1.0000 120 chr3L:14300996-14301116 1.0000 120 chrX:9601509-9601629 1.0000 120 chr3R:29706910-29707030 1.0000 120 chr2L:21330875-21330995 1.0000 120 chrX:18533501-18533621 1.0000 120 chr3L:13135066-13135186 1.0000 120 chr3L:17657089-17657209 1.0000 120 chr3R:22368464-22368584 1.0000 120 chrX:6756164-6756284 1.0000 120 chr3L:804655-804775 1.0000 120 chr2L:11470161-11470281 1.0000 120 chr3L:739573-739693 1.0000 120 chrX:13397777-13397897 1.0000 120 chr3R:30074884-30075004 1.0000 120 chr2L:3845826-3845946 1.0000 120 chr2R:18135293-18135413 1.0000 120 chr2L:14465110-14465230 1.0000 120 chr2R:22533057-22533177 1.0000 120 chr3L:8175960-8176080 1.0000 120 chr2L:19802290-19802410 1.0000 120 chr3R:27205416-27205536 1.0000 120 chrX:9615676-9615796 1.0000 120 chrX:11155086-11155206 1.0000 120 chr3R:14744511-14744631 1.0000 120 chr3L:1549299-1549419 1.0000 120 chrX:17111492-17111612 1.0000 120 chr2R:18872148-18872268 1.0000 120 chrX:9029934-9030054 1.0000 120 chr2L:17249538-17249658 1.0000 120 chr2R:21846978-21847098 1.0000 120 chr2L:8619773-8619893 1.0000 120 chr3R:10588735-10588855 1.0000 120 chr2R:21706753-21706873 1.0000 120 chr3R:4897282-4897402 1.0000 120 chrX:15552777-15552897 1.0000 120 chrX:10320567-10320687 1.0000 120 chr3L:13925449-13925569 1.0000 120 chr3L:1367144-1367264 1.0000 120 chr2L:19013283-19013403 1.0000 120 chr3L:8547879-8547999 1.0000 120 chr2R:10568455-10568575 1.0000 120 chr2L:8546742-8546862 1.0000 120 chr2L:6948804-6948924 1.0000 120 chr2R:19617850-19617970 1.0000 120 chr2L:8084931-8085051 1.0000 120 chr2L:3083717-3083837 1.0000 120 chr3R:19463288-19463408 1.0000 120 chr3L:12093806-12093926 1.0000 120 chr2L:18335803-18335923 1.0000 120 chrX:3465602-3465722 1.0000 120 chr2L:6201646-6201766 1.0000 120 chr3L:4107271-4107391 1.0000 120 chr2L:5610225-5610345 1.0000 120 chrX:7157253-7157373 1.0000 120 chr4:835392-835512 1.0000 120 chr2L:11432397-11432517 1.0000 120 chr3R:18992432-18992552 1.0000 120 chrX:21306308-21306428 1.0000 120 chr2L:6795310-6795430 1.0000 120 chr2L:7544434-7544554 1.0000 120 chrX:16912930-16913050 1.0000 120 chr2R:6870276-6870396 1.0000 120 chr2L:3855584-3855704 1.0000 120 chr3R:8956507-8956627 1.0000 120 chr2R:6157999-6158119 1.0000 120 chr3L:22743224-22743344 1.0000 120 chr3L:7953261-7953381 1.0000 120 chrX:14488067-14488187 1.0000 120 chr3R:5208093-5208213 1.0000 120 chr3R:19801907-19802027 1.0000 120 chr2L:20230040-20230160 1.0000 120 chr3L:11173230-11173350 1.0000 120 chr3R:16907962-16908082 1.0000 120 chr2L:13203260-13203380 1.0000 120 chr3L:483983-484103 1.0000 120 chr3L:1920846-1920966 1.0000 120 chr3L:16429590-16429710 1.0000 120 chr3L:789731-789851 1.0000 120 chr2L:14698169-14698289 1.0000 120 chrX:17742668-17742788 1.0000 120 chr3R:5031965-5032085 1.0000 120 chr2R:10212508-10212628 1.0000 120 chr3R:14511262-14511382 1.0000 120 chr2R:22142114-22142234 1.0000 120 chrX:6545934-6546054 1.0000 120 chr3R:19467588-19467708 1.0000 120 chrX:3058034-3058154 1.0000 120 chr3R:13320002-13320122 1.0000 120 chr3L:15234587-15234707 1.0000 120 chr3R:23672221-23672341 1.0000 120 chr3R:28831472-28831592 1.0000 120 chrX:8178368-8178488 1.0000 120 chr2R:17851597-17851717 1.0000 120 chr2L:5567156-5567276 1.0000 120 chrX:13141353-13141473 1.0000 120 chr3R:23048445-23048565 1.0000 120 chrX:15465329-15465449 1.0000 120 chr3L:11414489-11414609 1.0000 120 chrX:18839377-18839497 1.0000 120 chr2L:20464477-20464597 1.0000 120 chr3L:3870407-3870527 1.0000 120 chr2R:17261866-17261986 1.0000 120 chr3R:21589921-21590041 1.0000 120 chr3R:18906175-18906295 1.0000 120 chr2R:24305671-24305791 1.0000 120 chr2L:9496601-9496721 1.0000 120 chrX:6035438-6035558 1.0000 120 chr3R:19903450-19903570 1.0000 120 chr3R:10266863-10266983 1.0000 120 chr2L:1913132-1913252 1.0000 120 chr3L:808709-808829 1.0000 120 chrX:5690959-5691079 1.0000 120 chr2R:24323432-24323552 1.0000 120 chr3R:17708951-17709071 1.0000 120 chr3L:4357868-4357988 1.0000 120 chr2L:18981643-18981763 1.0000 120 chr2L:20852195-20852315 1.0000 120 chr3R:5599698-5599818 1.0000 120 chr3R:5114133-5114253 1.0000 120 chr3L:15507492-15507612 1.0000 120 chr2L:8545757-8545877 1.0000 120 chr2L:19433313-19433433 1.0000 120 chr2R:15913688-15913808 1.0000 120 chr3R:24298612-24298732 1.0000 120 chr2L:12679476-12679596 1.0000 120 chr3L:11365784-11365904 1.0000 120 chr3L:11292507-11292627 1.0000 120 chrX:2024929-2025049 1.0000 120 chr3L:11293479-11293599 1.0000 120 chr2L:12049278-12049398 1.0000 120 chr2L:13548775-13548895 1.0000 120 chr3R:7085639-7085759 1.0000 120 chr3R:23869015-23869135 1.0000 120 chr2L:10260743-10260863 1.0000 120 chr2L:12498674-12498794 1.0000 120 chrX:9644921-9645041 1.0000 120 chr2R:19469001-19469121 1.0000 120 chr3R:16285006-16285126 1.0000 120 chr2L:21219822-21219942 1.0000 120 chr3L:968373-968493 1.0000 120 chrX:10462107-10462227 1.0000 120 chr3R:7779742-7779862 1.0000 120 chr3R:19822304-19822424 1.0000 120 chr2R:7905110-7905230 1.0000 120 chr3L:8604475-8604595 1.0000 120 chr3L:18240719-18240839 1.0000 120 chr2L:4794161-4794281 1.0000 120 chr2R:21874170-21874290 1.0000 120 chrX:15568528-15568648 1.0000 120 chr2R:11582171-11582291 1.0000 120 chr2L:2228336-2228456 1.0000 120 chr2L:20886159-20886279 1.0000 120 chrX:19605904-19606024 1.0000 120 chr3L:7837252-7837372 1.0000 120 chr3R:12644956-12645076 1.0000 120 chr3R:21001249-21001369 1.0000 120 chr2L:2883637-2883757 1.0000 120 chrX:17509743-17509863 1.0000 120 chr3R:24301585-24301705 1.0000 120 chr2R:15136327-15136447 1.0000 120 chr2L:10967310-10967430 1.0000 120 chrX:17300508-17300628 1.0000 120 chr3L:14029151-14029271 1.0000 120 chrX:5086313-5086433 1.0000 120 chr2R:23798515-23798635 1.0000 120 chr2L:7994717-7994837 1.0000 120 chr2R:22403190-22403310 1.0000 120 chr2R:22508179-22508299 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG4707/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4707.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.271 C 0.221 G 0.227 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.271 C 0.221 G 0.227 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CACWGTGS MEME-1 width = 8 sites = 171 llr = 1449 E-value = 9.1e-189 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACWGTGS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:5:::: pos.-specific C 8:a::::4 probability G ::::a:96 matrix T 1::4:a:: bits 2.2 2.0 ** * 1.7 ** *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 *** **** (12.2 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACAGTGG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18240719-18240839 98 1.18e-05 ggacgggcgg CACAGTGG GACCTGCAGT chr2L:21219822-21219942 64 1.18e-05 TGGTGTCCCG CACAGTGG CCATCAGAAT chr2L:13548775-13548895 43 1.18e-05 GTTCTGGGCG CACAGTGG GGCAAGCTTA chr3L:11292507-11292627 84 1.18e-05 AGCTACCGAG CACAGTGG GCTTAATAAA chr3L:11365784-11365904 82 1.18e-05 TTGGAGCTGG CACAGTGG GGCCAACGAC chr2L:19433313-19433433 46 1.18e-05 ACATTCGCGG CACAGTGG AACTTTAGTA chr2L:8545757-8545877 40 1.18e-05 GATACCCCGG CACAGTGG AGCAGATGAT chr3R:19903450-19903570 64 1.18e-05 CCGCGCAACG CACAGTGG AACACAAAGT chr2L:9496601-9496721 77 1.18e-05 CCTCACTGCG CACAGTGG GACTAGAAAA chr3R:23048445-23048565 31 1.18e-05 TCCCCACGCG CACAGTGG GAACTGCGGA chr3L:15234587-15234707 74 1.18e-05 ACATAGTGCG CACAGTGG GCCCAAATCG chr2R:22142114-22142234 66 1.18e-05 GGCAATGCGG CACAGTGG GCCAGATCGG chr2R:6870276-6870396 36 1.18e-05 TGGCTTGCAG CACAGTGG GTGTCGTCGC chr2L:7544434-7544554 74 1.18e-05 GATCGCGTCG CACAGTGG GCTGAAGAGA chr2L:3083717-3083837 26 1.18e-05 CTGTGCTGTG CACAGTGG GCACTGTGTG chr2L:8084931-8085051 62 1.18e-05 CGATCGCGGG CACAGTGG GTTGCAATCC chr2R:19617850-19617970 83 1.18e-05 TTACAATCGA CACAGTGG GCCACGTTAG chr3R:4897282-4897402 80 1.18e-05 GTCCTAGCTG CACAGTGG GCATGTTTCA chr2R:21846978-21847098 74 1.18e-05 GCACATCAGC CACAGTGG GCAGCAAAAA chr3L:1549299-1549419 64 1.18e-05 CAGCTGACCG CACAGTGG GCCTATTTAC chr3R:27205416-27205536 84 1.18e-05 AAAAAGGGGC CACAGTGG GACAGTGGCA chr3L:739573-739693 69 1.18e-05 CTTGCGCTCG CACAGTGG GCCGAAATGC chr3R:22368464-22368584 59 1.18e-05 TCAAGGTCAG CACAGTGG AATTCTAGGT chr3R:29706910-29707030 6 1.18e-05 AGTGG CACAGTGG TTGCCATTTG chrX:9601509-9601629 30 1.18e-05 CACGCAGCTG CACAGTGG GCGAAAAGCG chr3L:14300996-14301116 40 1.18e-05 ACTCTAGCCG CACAGTGG AGTTGGAATA chr3L:11217941-11218061 51 1.18e-05 CTCGGATTGG CACAGTGG GCCGCGTTTA chrX:15803845-15803965 33 1.18e-05 CTTTTGACTG CACAGTGG AATGCATTCA chr2R:7249906-7250026 54 1.18e-05 AATGGCCCCG CACAGTGG GCGCAAGCAA chrX:19751806-19751926 68 1.18e-05 AGCAGCCGCG CACAGTGG GCCGGACAGT chr3L:7529769-7529889 35 1.18e-05 GATCGTGTGG CACAGTGG GCAGCATCAG chrX:12575406-12575526 60 1.18e-05 GCCGGCGTCG CACAGTGG GCTGCATACG chr3L:16016883-16017003 41 1.18e-05 TTGATGAGTG CACAGTGG GAGACAATGG chr3L:16896587-16896707 91 1.18e-05 CGAAGCTGCG CACAGTGG AATGAATTTG chr2R:8659036-8659156 13 1.18e-05 ACAGTTGCTG CACAGTGG GACCAAAGGG chr3R:15600250-15600370 55 1.18e-05 GTGCGCACCG CACAGTGG GCAACTTTGA chrX:18137615-18137735 52 1.18e-05 CACGCGCTCG CACAGTGG AGTCAAGTGT chr2R:16921491-16921611 58 1.18e-05 TTGCCGGCTG CACAGTGG GCCTGATCGG chr3R:9480723-9480843 28 1.18e-05 ATTGCCACCG CACAGTGG GACTGTGGTA chr2R:21534892-21535012 72 1.18e-05 GACAGGCCAG CACAGTGG GCACTGGCGG chr3L:10906415-10906535 61 1.18e-05 GCCCACGGTG CACAGTGG CCACATGCGG chr3R:15580562-15580682 61 1.18e-05 CGATGAGCTG CACAGTGG TCAATCCACC chrX:10234059-10234179 81 1.18e-05 ttgttgtGTG CACAGTGG GACTTGAAGT chr3L:22276150-22276270 48 1.18e-05 ACTGTGCGGG CACAGTGG GCCTCATTGT chrX:5690752-5690872 37 1.18e-05 GGCGCTCGCT CACAGTGG GCACCATCGT chrX:3475188-3475308 50 1.18e-05 GCCACAGCTG CACAGTGG GACATCGAGA chr2R:6119627-6119747 11 1.18e-05 TTTTTGGGTG CACAGTGG GGCAGATCGA chr3R:15410599-15410719 47 1.18e-05 AGCTTGTGGG CACAGTGG GCCTGGGATG chr2L:16415525-16415645 60 1.18e-05 GCCCACTGTG CACAGTGG GTAGCAGACG chr2R:7724037-7724157 13 1.18e-05 GAGGCGCCTG CACAGTGG GGTGCATTCC chrX:5970801-5970921 78 1.18e-05 GCACAATAGC CACAGTGg gaaggaatgg chr3L:6919314-6919434 45 1.18e-05 acagtgggca cacagtgg gcaacagtgg chrX:15568528-15568648 99 3.55e-05 TTCGCCTTAT CACAGTGC ATATGAGaga chr2L:4794161-4794281 97 3.55e-05 AGCTCTTCGA CACAGTGC TATAAAAATC chrX:9644921-9645041 94 3.55e-05 AATGCCATTG CACTGTGG CCCACCTTAT chr3L:4357868-4357988 12 3.55e-05 AACTTATTTA CACAGTGC TCGACAACAT chr3R:17708951-17709071 88 3.55e-05 ATTTGGCGCC CACTGTGG CGTGTGTGTA chr2R:24305671-24305791 49 3.55e-05 CCACTGTGCG CACTGTGG CTgtttgcgt chr3L:11369710-11369830 66 3.55e-05 GAAAATCGCC CACAGTGC AATGGCACCG chr2R:6156281-6156401 69 3.55e-05 AGTTTTGCCC CACAGTGC AAGTGCATCG chr3L:14122167-14122287 89 3.55e-05 ATCTCTATCG CACTGTGG TGAAAAAGTA chr2R:22532130-22532250 40 3.55e-05 ACTGTGCCAC CACTGTGG GCCCAAACCG chrX:17300508-17300628 85 4.74e-05 AACGACTCTC CACTGTGC GAAGAGCGGG chr2L:10967310-10967430 78 4.74e-05 GAAACTGCAC CACTGTGC AATAATGAGA chr3L:11293479-11293599 38 4.74e-05 GGCTTTGTCC CACTGTGC GCCACCGGTT chr2L:12679476-12679596 46 4.74e-05 TTGAGTGTCC CACTGTGC GAGCGTGTGA chr3R:5599698-5599818 48 4.74e-05 CACACATACC CACTGTGC ATTTTACAGT chr3R:10266863-10266983 77 4.74e-05 AGGTTGTTCC CACTGTGC GTGGACGCTC chr3L:3870407-3870527 45 4.74e-05 ATTCCATGTC CACTGTGC GGGCCAAGCT chrX:8178368-8178488 87 4.74e-05 CGATTGGGCC CACTGTGC TTCGGCAACA chr3R:28831472-28831592 54 4.74e-05 CAATCCACCC CACTGTGC GCCACTCCGT chrX:6545934-6546054 43 4.74e-05 CGATTTGCCC CACTGTGC GGCTGGGCGG chrX:17742668-17742788 51 4.74e-05 ATTATGGTCC CACTGTGC GGCGTCGTTT chr3L:1920846-1920966 30 4.74e-05 CAATGCGCCC CACTGTGC GGCACCGTGG chrX:14488067-14488187 29 4.74e-05 CTTCTGGTCC CACTGTGC CCCGCCTCCT chr3L:7953261-7953381 41 4.74e-05 GAACTTGACC CACTGTGC ACCCTGGGCT chr3L:22743224-22743344 78 4.74e-05 GTTTGCACTC CACTGTGC GCCAGGCCTT chr2R:6157999-6158119 65 4.74e-05 TAGTTTGCTC CACTGTGC GCGCACTTGG chrX:16912930-16913050 75 4.74e-05 CTTTCTGGCC CACTGTGC GATGCAGGGC chrX:21306308-21306428 60 4.74e-05 GGATTTCGCC CACTGTGC GGCTGTCTAA chr3L:12093806-12093926 37 4.74e-05 GTATGCATCC CACTGTGC CGCCCGCACA chr3R:19463288-19463408 35 4.74e-05 TTATCTACCC CACTGTGC CTGCGCTCAG chr2R:10568455-10568575 74 4.74e-05 TGGTTTGTCC CACTGTGC GCGTGATGTG chr3L:1367144-1367264 79 4.74e-05 TTGTTGTACC CACTGTGC AGATGCATCT chr2L:8619773-8619893 81 4.74e-05 CCCTTATGCC CACTGTGC GATGTGTGCT chrX:9029934-9030054 60 4.74e-05 CCACTGTACC CACTGTGC CGCTCCACAA chrX:17111492-17111612 66 4.74e-05 CTATGTGACC CACTGTGC CGCATTTTAC chr2R:22533057-22533177 34 4.74e-05 CCACACAACC CACTGTGC AGAGCGAGAC chr2L:14465110-14465230 74 4.74e-05 TGGATATGAC CACTGTGC GTGCCCAAAG chr2L:11470161-11470281 76 4.74e-05 CGATTTGCCC CACTGTGC GTTGCAGTTG chr3L:13135066-13135186 75 4.74e-05 ATTTCATGCC CACTGTGC ATTGTGCATT chrX:18533501-18533621 90 4.74e-05 CGATTTGTCC CACTGTGC CTGCCTGTGC chr2L:2364335-2364455 37 4.74e-05 CCTTGCGACC CACTGTGC ACGCTGCACT chr3R:16878605-16878725 74 4.74e-05 ACAATGGGCC CACTGTGC GGCCATTATG chrX:17790579-17790699 99 4.74e-05 TGCTACGTTC CACTGTGC GGCCAGGATT chrX:15709826-15709946 77 4.74e-05 GTCTGCGCTC CACTGTGC CGCATTCTGC chr3R:8712130-8712250 76 4.74e-05 GTACCTGTCC CACTGTGC GCCATGCACT chr3R:26036200-26036320 63 4.74e-05 CGGTTTGGCC CACTGTGC CATGTGCATA chrX:8674797-8674917 84 4.74e-05 TCAATTTTTC CACTGTGC AGTAGTTGCG chrX:18207740-18207860 31 4.74e-05 GATGTGGCCC CACTGTGC TCTCTTATCA chr2R:15912969-15913089 97 4.74e-05 GACTTGGGCC CACTGTGC CATCAGGTTC chr3R:18371514-18371634 48 4.74e-05 CCATGACAAC CACTGTGC GCACTAGCTC chrX:1209638-1209758 78 4.74e-05 GAATTTAACC CACTGTGC GCAAACGAAA chr3L:1488617-1488737 46 4.74e-05 CAAGTGGATC CACTGTGC AGAGCTTTTC chr3R:16893463-16893583 54 4.74e-05 GTAAAGTGCC CACTGTGC GCATGTGCGG chrX:7735324-7735444 58 4.74e-05 ACGCTTGGCC CACTGTGC GATCTTCGTG chr3L:2882495-2882615 59 4.74e-05 GGTTCCGTCC CACTGTGC CAGTTTGAAT chrX:17832244-17832364 63 4.74e-05 GTGCGCGGCC CACTGTGC ggagtaggag chr3R:7076439-7076559 61 4.74e-05 TTTTTGAGCC CACTGTGC GAACGCCTAA chr2R:14014995-14015115 50 4.74e-05 CGATTTCTAC CACTGTGC GTCTTGCACA chr2R:23547332-23547452 70 4.74e-05 TTATGACAAC CACTGTGC GACGACGGAA chr2L:13203260-13203380 93 6.24e-05 GTATTATTTT TACAGTGG GATCAATCAA chr2L:3855584-3855704 23 6.24e-05 TGGTATGCAG TACAGTGG GAGAAATTAG chr3L:4107271-4107391 55 6.24e-05 CACGGCGTTG TACAGTGG GTATATATGG chr2L:6948804-6948924 83 6.24e-05 TTCATCGCGG TACAGTGG ACTGAATCTA chr2L:19013283-19013403 39 6.24e-05 CGCTTACACA TACAGTGG GGCAAATCGA chr3R:30074884-30075004 44 6.24e-05 TGGCTGCTGG TACAGTGG GATCTTTAAG chr3L:804655-804775 19 6.24e-05 GCCAGCAATG TACAGTGG GTTCTTACTA chr2R:21897811-21897931 11 6.24e-05 AGCCAAAGTT TACAGTGG ACAACTTTAA chr2R:14903826-14903946 74 6.24e-05 ACTTGGCTAG TACAGTGG GTCAATATTG chrX:15803001-15803121 72 6.24e-05 GTATCGTACA TACAGTGG GCCGCATCCA chr3R:10624314-10624434 10 6.24e-05 CAGATTGAG TACAGTGG GCCAAAACGG chr3L:15853491-15853611 56 6.24e-05 TTATTGCAAC TACAGTGG CACGTACTGC chr2L:17541525-17541645 58 6.24e-05 GTGGACAAGT TACAGTGG AACAAATGTC chr2L:16707020-16707140 72 6.24e-05 TCAATGTACA TACAGTGG GCAATGCGGT chr3L:14029151-14029271 84 9.25e-05 ATTTCATTTG TACTGTGG TCCAAAAAGC chr3R:5031965-5032085 64 1.08e-04 AGCGTTGGTT TACTGTGC CTTCATTGTT chr3R:18992432-18992552 25 1.17e-04 GTGTGTCTGC CACCGTGG TTAGTTCCAA chr3R:23869015-23869135 88 1.29e-04 TACATGCGGC GACAGTGG ATAAGTGTAG chr3R:7085639-7085759 43 1.29e-04 gtgtgagtgt gacagtgg gtgtacgtgt chrX:5690959-5691079 89 1.29e-04 gttgacggtg gacagtgg CTGGTTGTGC chr3R:18906175-18906295 56 1.29e-04 TACAGAGACC GACAGTGG GACCGACCAT chr2L:17249538-17249658 51 1.29e-04 AGTCAGGATG GACAGTGG GACGGACAGG chr3L:8175960-8176080 67 1.29e-04 CACATGCTGG GACAGTGG GCAAAAATAC chr3L:8604475-8604595 67 1.39e-04 CTCTGGCGCC CACCGTGC AGCAAGCAGT chr2R:21706753-21706873 50 1.39e-04 CCATTGGTCC CACCGTGC CAGTGGGTCG chr2L:5567156-5567276 56 1.77e-04 GCGTGAGTCG CACAATGG GTCTTGTTGC chr3R:8956507-8956627 106 1.77e-04 CAGAAGCCTC CACAATGG ACAATGT chrX:19605904-19606024 22 1.92e-04 gtatgtaCTA AACAGTGG GCCTCATAGG chr2L:2228336-2228456 39 1.92e-04 ACGAGCTGGA AACAGTGG GACGTGTTGC chr3L:808709-808829 26 1.92e-04 TGGAGTGGAA AACAGTGG CAACAGTTGA chrX:11155086-11155206 60 1.92e-04 CATGGCGATG AACAGTGG GACGCAAACG chr3R:18104450-18104570 75 1.92e-04 ACTGCATTTG AACAGTGG AACAAATTTG chr3R:20561024-20561144 73 1.92e-04 caacaacgac aacagtgg gccaaaacaa chrX:3058034-3058154 74 2.46e-04 gagtactttg cacaatgc ctcgatgcag chrX:15552777-15552897 31 2.46e-04 TTCGCCGGCG cactatgg gaaatttgac chr2L:21329670-21329790 76 2.46e-04 TAGACCCTTG cactatgg gaaatttacc chrX:13303901-13304021 45 2.46e-04 CATTGTGCGT GACTGTGC GCTTGTAGTG chr3L:21878724-21878844 34 2.46e-04 CTTCCTCTTG cactatgg gaaattttac chr2L:3845826-3845946 91 2.90e-04 TTTTGGACGA CATAGTGG CAAGTAATTG chrX:3465602-3465722 71 3.44e-04 GTTTCGGTGG CACTGTAG TAGCACTTTA chrX:6756164-6756284 33 3.89e-04 gctttttacc catagtgC AACGTACCAG chr2L:6250060-6250180 43 3.89e-04 GTCATAAGCC CATAGTGC GACTGAATGT chrX:15553558-15553678 62 3.89e-04 gtaaatttcc catagtgC GGCGGTTCGG chr2L:21632164-21632284 72 3.89e-04 ttaggtttcc catagtgC AGTCCACCCC chr3R:4607705-4607825 59 4.26e-04 tcataaggcc cacTGTAC CATGTagtag chr3R:10638760-10638880 52 4.26e-04 TGAATTGCGC CACTGTAC ACTGACAGTT chrX:18246959-18247079 103 4.26e-04 CGATTTGGCC CACTGTCG TCTCTTTGCT chr2L:12346276-12346396 57 4.26e-04 CACTAGCGCC CACTGTAC CTGTAAATCG chrX:16595648-16595768 58 4.26e-04 TTTTACGGCC CACTGTAC GTTCCACCAG chr3L:16563477-16563597 29 4.26e-04 TTTACAATCC CACTGTAC TGCTGGAAAG chr3R:5114133-5114253 51 4.41e-04 AGAAAGAGCC CATTGTGC GGCACAAACA chr3R:10588735-10588855 51 4.53e-04 ctgtttgtcc cactgtcc atctgtccat chrX:8884133-8884253 62 4.53e-04 CGATTAGTCC CACTGTCC GTGCCCACGA chr3L:3352618-3352738 71 4.53e-04 CAAATTGTCC CACTGTCC AACTAATTCA chr2R:18872148-18872268 55 4.63e-04 CAACTAGTCC CACGGTGG CACCATGGGC chr2R:19469001-19469121 80 5.09e-04 CGCCCAAGCT CAGTGTGG CGCCATCTAG chr3R:5208093-5208213 94 5.09e-04 ATATTTGAAC CAGTGTGG GCCAACTCCA chr3R:24298612-24298732 44 5.33e-04 CCAACAACGA TACCGTGG GCCACAACGC chr3L:7837252-7837372 86 5.63e-04 GCTTTTACTT TACAATGG AACAAATAGG chr2L:2901202-2901322 32 5.63e-04 TTGCACTCCG TACAATGG GCATTACAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18240719-18240839 1.2e-05 97_[+1]_15 chr2L:21219822-21219942 1.2e-05 63_[+1]_49 chr2L:13548775-13548895 1.2e-05 42_[+1]_70 chr3L:11292507-11292627 1.2e-05 83_[+1]_29 chr3L:11365784-11365904 1.2e-05 81_[+1]_31 chr2L:19433313-19433433 1.2e-05 45_[+1]_67 chr2L:8545757-8545877 1.2e-05 39_[+1]_73 chr3R:19903450-19903570 1.2e-05 63_[+1]_49 chr2L:9496601-9496721 1.2e-05 76_[+1]_36 chr3R:23048445-23048565 1.2e-05 30_[+1]_82 chr3L:15234587-15234707 1.2e-05 73_[+1]_39 chr2R:22142114-22142234 1.2e-05 65_[+1]_47 chr2R:6870276-6870396 1.2e-05 35_[+1]_77 chr2L:7544434-7544554 1.2e-05 73_[+1]_39 chr2L:3083717-3083837 1.2e-05 25_[+1]_87 chr2L:8084931-8085051 1.2e-05 61_[+1]_51 chr2R:19617850-19617970 1.2e-05 82_[+1]_30 chr3R:4897282-4897402 1.2e-05 79_[+1]_33 chr2R:21846978-21847098 1.2e-05 73_[+1]_39 chr3L:1549299-1549419 1.2e-05 63_[+1]_49 chr3R:27205416-27205536 1.2e-05 83_[+1]_29 chr3L:739573-739693 1.2e-05 68_[+1]_44 chr3R:22368464-22368584 1.2e-05 58_[+1]_54 chr3R:29706910-29707030 1.2e-05 5_[+1]_107 chrX:9601509-9601629 1.2e-05 29_[+1]_83 chr3L:14300996-14301116 1.2e-05 39_[+1]_73 chr3L:11217941-11218061 1.2e-05 50_[+1]_62 chrX:15803845-15803965 1.2e-05 32_[+1]_80 chr2R:7249906-7250026 1.2e-05 53_[+1]_59 chrX:19751806-19751926 1.2e-05 67_[+1]_45 chr3L:7529769-7529889 1.2e-05 34_[+1]_78 chrX:12575406-12575526 1.2e-05 59_[+1]_53 chr3L:16016883-16017003 1.2e-05 40_[+1]_72 chr3L:16896587-16896707 1.2e-05 90_[+1]_22 chr2R:8659036-8659156 1.2e-05 12_[+1]_100 chr3R:15600250-15600370 1.2e-05 54_[+1]_58 chrX:18137615-18137735 1.2e-05 51_[+1]_61 chr2R:16921491-16921611 1.2e-05 57_[+1]_55 chr3R:9480723-9480843 1.2e-05 27_[+1]_85 chr2R:21534892-21535012 1.2e-05 71_[+1]_41 chr3L:10906415-10906535 1.2e-05 60_[+1]_52 chr3R:15580562-15580682 1.2e-05 60_[+1]_52 chrX:10234059-10234179 1.2e-05 80_[+1]_32 chr3L:22276150-22276270 1.2e-05 47_[+1]_65 chrX:5690752-5690872 1.2e-05 36_[+1]_76 chrX:3475188-3475308 1.2e-05 49_[+1]_63 chr2R:6119627-6119747 1.2e-05 10_[+1]_102 chr3R:15410599-15410719 1.2e-05 46_[+1]_66 chr2L:16415525-16415645 1.2e-05 59_[+1]_53 chr2R:7724037-7724157 1.2e-05 12_[+1]_100 chrX:5970801-5970921 1.2e-05 77_[+1]_35 chr3L:6919314-6919434 1.2e-05 44_[+1]_68 chrX:15568528-15568648 3.5e-05 98_[+1]_14 chr2L:4794161-4794281 3.5e-05 96_[+1]_16 chrX:9644921-9645041 3.5e-05 93_[+1]_19 chr3L:4357868-4357988 3.5e-05 11_[+1]_101 chr3R:17708951-17709071 3.5e-05 87_[+1]_25 chr2R:24305671-24305791 3.5e-05 48_[+1]_64 chr3L:11369710-11369830 3.5e-05 65_[+1]_47 chr2R:6156281-6156401 3.5e-05 68_[+1]_44 chr3L:14122167-14122287 3.5e-05 88_[+1]_24 chr2R:22532130-22532250 3.5e-05 39_[+1]_73 chrX:17300508-17300628 4.7e-05 84_[+1]_28 chr2L:10967310-10967430 4.7e-05 77_[+1]_35 chr3L:11293479-11293599 4.7e-05 37_[+1]_75 chr2L:12679476-12679596 4.7e-05 45_[+1]_67 chr3R:5599698-5599818 4.7e-05 47_[+1]_65 chr3R:10266863-10266983 4.7e-05 76_[+1]_36 chr3L:3870407-3870527 4.7e-05 44_[+1]_68 chrX:8178368-8178488 4.7e-05 86_[+1]_26 chr3R:28831472-28831592 4.7e-05 53_[+1]_59 chrX:6545934-6546054 4.7e-05 42_[+1]_70 chrX:17742668-17742788 4.7e-05 50_[+1]_62 chr3L:1920846-1920966 4.7e-05 29_[+1]_83 chrX:14488067-14488187 4.7e-05 28_[+1]_84 chr3L:7953261-7953381 4.7e-05 40_[+1]_72 chr3L:22743224-22743344 4.7e-05 77_[+1]_35 chr2R:6157999-6158119 4.7e-05 64_[+1]_48 chrX:16912930-16913050 4.7e-05 74_[+1]_38 chrX:21306308-21306428 4.7e-05 59_[+1]_53 chr3L:12093806-12093926 4.7e-05 36_[+1]_76 chr3R:19463288-19463408 4.7e-05 34_[+1]_78 chr2R:10568455-10568575 4.7e-05 73_[+1]_39 chr3L:1367144-1367264 4.7e-05 78_[+1]_34 chr2L:8619773-8619893 4.7e-05 80_[+1]_32 chrX:9029934-9030054 4.7e-05 59_[+1]_53 chrX:17111492-17111612 4.7e-05 65_[+1]_47 chr2R:22533057-22533177 4.7e-05 33_[+1]_79 chr2L:14465110-14465230 4.7e-05 73_[+1]_39 chr2L:11470161-11470281 4.7e-05 75_[+1]_37 chr3L:13135066-13135186 4.7e-05 74_[+1]_38 chrX:18533501-18533621 4.7e-05 89_[+1]_23 chr2L:2364335-2364455 4.7e-05 36_[+1]_76 chr3R:16878605-16878725 4.7e-05 73_[+1]_39 chrX:17790579-17790699 4.7e-05 98_[+1]_14 chrX:15709826-15709946 4.7e-05 76_[+1]_36 chr3R:8712130-8712250 4.7e-05 75_[+1]_37 chr3R:26036200-26036320 4.7e-05 62_[+1]_50 chrX:8674797-8674917 4.7e-05 83_[+1]_29 chrX:18207740-18207860 4.7e-05 30_[+1]_82 chr2R:15912969-15913089 4.7e-05 96_[+1]_16 chr3R:18371514-18371634 4.7e-05 47_[+1]_65 chrX:1209638-1209758 4.7e-05 77_[+1]_35 chr3L:1488617-1488737 4.7e-05 45_[+1]_67 chr3R:16893463-16893583 4.7e-05 53_[+1]_59 chrX:7735324-7735444 4.7e-05 57_[+1]_55 chr3L:2882495-2882615 4.7e-05 58_[+1]_54 chrX:17832244-17832364 4.7e-05 62_[+1]_50 chr3R:7076439-7076559 4.7e-05 60_[+1]_52 chr2R:14014995-14015115 4.7e-05 49_[+1]_63 chr2R:23547332-23547452 4.7e-05 69_[+1]_43 chr2L:13203260-13203380 6.2e-05 92_[+1]_20 chr2L:3855584-3855704 6.2e-05 22_[+1]_90 chr3L:4107271-4107391 6.2e-05 54_[+1]_58 chr2L:6948804-6948924 6.2e-05 82_[+1]_30 chr2L:19013283-19013403 6.2e-05 38_[+1]_74 chr3R:30074884-30075004 6.2e-05 43_[+1]_69 chr3L:804655-804775 6.2e-05 18_[+1]_94 chr2R:21897811-21897931 6.2e-05 10_[+1]_102 chr2R:14903826-14903946 6.2e-05 73_[+1]_39 chrX:15803001-15803121 6.2e-05 71_[+1]_41 chr3R:10624314-10624434 6.2e-05 9_[+1]_103 chr3L:15853491-15853611 6.2e-05 55_[+1]_57 chr2L:17541525-17541645 6.2e-05 57_[+1]_55 chr2L:16707020-16707140 6.2e-05 71_[+1]_41 chr3L:14029151-14029271 9.3e-05 83_[+1]_29 chr3R:5031965-5032085 0.00011 63_[+1]_49 chr3R:18992432-18992552 0.00012 24_[+1]_88 chr3R:23869015-23869135 0.00013 87_[+1]_25 chr3R:7085639-7085759 0.00013 42_[+1]_70 chrX:5690959-5691079 0.00013 88_[+1]_24 chr3R:18906175-18906295 0.00013 55_[+1]_57 chr2L:17249538-17249658 0.00013 50_[+1]_62 chr3L:8175960-8176080 0.00013 66_[+1]_46 chr3L:8604475-8604595 0.00014 66_[+1]_46 chr2R:21706753-21706873 0.00014 49_[+1]_63 chr2L:5567156-5567276 0.00018 55_[+1]_57 chr3R:8956507-8956627 0.00018 105_[+1]_7 chrX:19605904-19606024 0.00019 21_[+1]_91 chr2L:2228336-2228456 0.00019 38_[+1]_74 chr3L:808709-808829 0.00019 25_[+1]_87 chrX:11155086-11155206 0.00019 59_[+1]_53 chr3R:18104450-18104570 0.00019 74_[+1]_38 chr3R:20561024-20561144 0.00019 72_[+1]_40 chrX:3058034-3058154 0.00025 73_[+1]_39 chrX:15552777-15552897 0.00025 30_[+1]_82 chr2L:21329670-21329790 0.00025 75_[+1]_37 chrX:13303901-13304021 0.00025 44_[+1]_68 chr3L:21878724-21878844 0.00025 33_[+1]_79 chr2L:3845826-3845946 0.00029 90_[+1]_22 chrX:3465602-3465722 0.00034 70_[+1]_42 chrX:6756164-6756284 0.00039 32_[+1]_80 chr2L:6250060-6250180 0.00039 42_[+1]_70 chrX:15553558-15553678 0.00039 61_[+1]_51 chr2L:21632164-21632284 0.00039 71_[+1]_41 chr3R:4607705-4607825 0.00043 58_[+1]_54 chr3R:10638760-10638880 0.00043 51_[+1]_61 chrX:18246959-18247079 0.00043 102_[+1]_10 chr2L:12346276-12346396 0.00043 56_[+1]_56 chrX:16595648-16595768 0.00043 57_[+1]_55 chr3L:16563477-16563597 0.00043 28_[+1]_84 chr3R:5114133-5114253 0.00044 50_[+1]_62 chr3R:10588735-10588855 0.00045 50_[+1]_62 chrX:8884133-8884253 0.00045 61_[+1]_51 chr3L:3352618-3352738 0.00045 70_[+1]_42 chr2R:18872148-18872268 0.00046 54_[+1]_58 chr2R:19469001-19469121 0.00051 79_[+1]_33 chr3R:5208093-5208213 0.00051 93_[+1]_19 chr3R:24298612-24298732 0.00053 43_[+1]_69 chr3L:7837252-7837372 0.00056 85_[+1]_27 chr2L:2901202-2901322 0.00056 31_[+1]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACWGTGS width=8 seqs=171 chr3L:18240719-18240839 ( 98) CACAGTGG 1 chr2L:21219822-21219942 ( 64) CACAGTGG 1 chr2L:13548775-13548895 ( 43) CACAGTGG 1 chr3L:11292507-11292627 ( 84) CACAGTGG 1 chr3L:11365784-11365904 ( 82) CACAGTGG 1 chr2L:19433313-19433433 ( 46) CACAGTGG 1 chr2L:8545757-8545877 ( 40) CACAGTGG 1 chr3R:19903450-19903570 ( 64) CACAGTGG 1 chr2L:9496601-9496721 ( 77) CACAGTGG 1 chr3R:23048445-23048565 ( 31) CACAGTGG 1 chr3L:15234587-15234707 ( 74) CACAGTGG 1 chr2R:22142114-22142234 ( 66) CACAGTGG 1 chr2R:6870276-6870396 ( 36) CACAGTGG 1 chr2L:7544434-7544554 ( 74) CACAGTGG 1 chr2L:3083717-3083837 ( 26) CACAGTGG 1 chr2L:8084931-8085051 ( 62) CACAGTGG 1 chr2R:19617850-19617970 ( 83) CACAGTGG 1 chr3R:4897282-4897402 ( 80) CACAGTGG 1 chr2R:21846978-21847098 ( 74) CACAGTGG 1 chr3L:1549299-1549419 ( 64) CACAGTGG 1 chr3R:27205416-27205536 ( 84) CACAGTGG 1 chr3L:739573-739693 ( 69) CACAGTGG 1 chr3R:22368464-22368584 ( 59) CACAGTGG 1 chr3R:29706910-29707030 ( 6) CACAGTGG 1 chrX:9601509-9601629 ( 30) CACAGTGG 1 chr3L:14300996-14301116 ( 40) CACAGTGG 1 chr3L:11217941-11218061 ( 51) CACAGTGG 1 chrX:15803845-15803965 ( 33) CACAGTGG 1 chr2R:7249906-7250026 ( 54) CACAGTGG 1 chrX:19751806-19751926 ( 68) CACAGTGG 1 chr3L:7529769-7529889 ( 35) CACAGTGG 1 chrX:12575406-12575526 ( 60) CACAGTGG 1 chr3L:16016883-16017003 ( 41) CACAGTGG 1 chr3L:16896587-16896707 ( 91) CACAGTGG 1 chr2R:8659036-8659156 ( 13) CACAGTGG 1 chr3R:15600250-15600370 ( 55) CACAGTGG 1 chrX:18137615-18137735 ( 52) CACAGTGG 1 chr2R:16921491-16921611 ( 58) CACAGTGG 1 chr3R:9480723-9480843 ( 28) CACAGTGG 1 chr2R:21534892-21535012 ( 72) CACAGTGG 1 chr3L:10906415-10906535 ( 61) CACAGTGG 1 chr3R:15580562-15580682 ( 61) CACAGTGG 1 chrX:10234059-10234179 ( 81) CACAGTGG 1 chr3L:22276150-22276270 ( 48) CACAGTGG 1 chrX:5690752-5690872 ( 37) CACAGTGG 1 chrX:3475188-3475308 ( 50) CACAGTGG 1 chr2R:6119627-6119747 ( 11) CACAGTGG 1 chr3R:15410599-15410719 ( 47) CACAGTGG 1 chr2L:16415525-16415645 ( 60) CACAGTGG 1 chr2R:7724037-7724157 ( 13) CACAGTGG 1 chrX:5970801-5970921 ( 78) CACAGTGG 1 chr3L:6919314-6919434 ( 45) CACAGTGG 1 chrX:15568528-15568648 ( 99) CACAGTGC 1 chr2L:4794161-4794281 ( 97) CACAGTGC 1 chrX:9644921-9645041 ( 94) CACTGTGG 1 chr3L:4357868-4357988 ( 12) CACAGTGC 1 chr3R:17708951-17709071 ( 88) CACTGTGG 1 chr2R:24305671-24305791 ( 49) CACTGTGG 1 chr3L:11369710-11369830 ( 66) CACAGTGC 1 chr2R:6156281-6156401 ( 69) CACAGTGC 1 chr3L:14122167-14122287 ( 89) CACTGTGG 1 chr2R:22532130-22532250 ( 40) CACTGTGG 1 chrX:17300508-17300628 ( 85) CACTGTGC 1 chr2L:10967310-10967430 ( 78) CACTGTGC 1 chr3L:11293479-11293599 ( 38) CACTGTGC 1 chr2L:12679476-12679596 ( 46) CACTGTGC 1 chr3R:5599698-5599818 ( 48) CACTGTGC 1 chr3R:10266863-10266983 ( 77) CACTGTGC 1 chr3L:3870407-3870527 ( 45) CACTGTGC 1 chrX:8178368-8178488 ( 87) CACTGTGC 1 chr3R:28831472-28831592 ( 54) CACTGTGC 1 chrX:6545934-6546054 ( 43) CACTGTGC 1 chrX:17742668-17742788 ( 51) CACTGTGC 1 chr3L:1920846-1920966 ( 30) CACTGTGC 1 chrX:14488067-14488187 ( 29) CACTGTGC 1 chr3L:7953261-7953381 ( 41) CACTGTGC 1 chr3L:22743224-22743344 ( 78) CACTGTGC 1 chr2R:6157999-6158119 ( 65) CACTGTGC 1 chrX:16912930-16913050 ( 75) CACTGTGC 1 chrX:21306308-21306428 ( 60) CACTGTGC 1 chr3L:12093806-12093926 ( 37) CACTGTGC 1 chr3R:19463288-19463408 ( 35) CACTGTGC 1 chr2R:10568455-10568575 ( 74) CACTGTGC 1 chr3L:1367144-1367264 ( 79) CACTGTGC 1 chr2L:8619773-8619893 ( 81) CACTGTGC 1 chrX:9029934-9030054 ( 60) CACTGTGC 1 chrX:17111492-17111612 ( 66) CACTGTGC 1 chr2R:22533057-22533177 ( 34) CACTGTGC 1 chr2L:14465110-14465230 ( 74) CACTGTGC 1 chr2L:11470161-11470281 ( 76) CACTGTGC 1 chr3L:13135066-13135186 ( 75) CACTGTGC 1 chrX:18533501-18533621 ( 90) CACTGTGC 1 chr2L:2364335-2364455 ( 37) CACTGTGC 1 chr3R:16878605-16878725 ( 74) CACTGTGC 1 chrX:17790579-17790699 ( 99) CACTGTGC 1 chrX:15709826-15709946 ( 77) CACTGTGC 1 chr3R:8712130-8712250 ( 76) CACTGTGC 1 chr3R:26036200-26036320 ( 63) CACTGTGC 1 chrX:8674797-8674917 ( 84) CACTGTGC 1 chrX:18207740-18207860 ( 31) CACTGTGC 1 chr2R:15912969-15913089 ( 97) CACTGTGC 1 chr3R:18371514-18371634 ( 48) CACTGTGC 1 chrX:1209638-1209758 ( 78) CACTGTGC 1 chr3L:1488617-1488737 ( 46) CACTGTGC 1 chr3R:16893463-16893583 ( 54) CACTGTGC 1 chrX:7735324-7735444 ( 58) CACTGTGC 1 chr3L:2882495-2882615 ( 59) CACTGTGC 1 chrX:17832244-17832364 ( 63) CACTGTGC 1 chr3R:7076439-7076559 ( 61) CACTGTGC 1 chr2R:14014995-14015115 ( 50) CACTGTGC 1 chr2R:23547332-23547452 ( 70) CACTGTGC 1 chr2L:13203260-13203380 ( 93) TACAGTGG 1 chr2L:3855584-3855704 ( 23) TACAGTGG 1 chr3L:4107271-4107391 ( 55) TACAGTGG 1 chr2L:6948804-6948924 ( 83) TACAGTGG 1 chr2L:19013283-19013403 ( 39) TACAGTGG 1 chr3R:30074884-30075004 ( 44) TACAGTGG 1 chr3L:804655-804775 ( 19) TACAGTGG 1 chr2R:21897811-21897931 ( 11) TACAGTGG 1 chr2R:14903826-14903946 ( 74) TACAGTGG 1 chrX:15803001-15803121 ( 72) TACAGTGG 1 chr3R:10624314-10624434 ( 10) TACAGTGG 1 chr3L:15853491-15853611 ( 56) TACAGTGG 1 chr2L:17541525-17541645 ( 58) TACAGTGG 1 chr2L:16707020-16707140 ( 72) TACAGTGG 1 chr3L:14029151-14029271 ( 84) TACTGTGG 1 chr3R:5031965-5032085 ( 64) TACTGTGC 1 chr3R:18992432-18992552 ( 25) CACCGTGG 1 chr3R:23869015-23869135 ( 88) GACAGTGG 1 chr3R:7085639-7085759 ( 43) GACAGTGG 1 chrX:5690959-5691079 ( 89) GACAGTGG 1 chr3R:18906175-18906295 ( 56) GACAGTGG 1 chr2L:17249538-17249658 ( 51) GACAGTGG 1 chr3L:8175960-8176080 ( 67) GACAGTGG 1 chr3L:8604475-8604595 ( 67) CACCGTGC 1 chr2R:21706753-21706873 ( 50) CACCGTGC 1 chr2L:5567156-5567276 ( 56) CACAATGG 1 chr3R:8956507-8956627 ( 106) CACAATGG 1 chrX:19605904-19606024 ( 22) AACAGTGG 1 chr2L:2228336-2228456 ( 39) AACAGTGG 1 chr3L:808709-808829 ( 26) AACAGTGG 1 chrX:11155086-11155206 ( 60) AACAGTGG 1 chr3R:18104450-18104570 ( 75) AACAGTGG 1 chr3R:20561024-20561144 ( 73) AACAGTGG 1 chrX:3058034-3058154 ( 74) CACAATGC 1 chrX:15552777-15552897 ( 31) CACTATGG 1 chr2L:21329670-21329790 ( 76) CACTATGG 1 chrX:13303901-13304021 ( 45) GACTGTGC 1 chr3L:21878724-21878844 ( 34) CACTATGG 1 chr2L:3845826-3845946 ( 91) CATAGTGG 1 chrX:3465602-3465722 ( 71) CACTGTAG 1 chrX:6756164-6756284 ( 33) CATAGTGC 1 chr2L:6250060-6250180 ( 43) CATAGTGC 1 chrX:15553558-15553678 ( 62) CATAGTGC 1 chr2L:21632164-21632284 ( 72) CATAGTGC 1 chr3R:4607705-4607825 ( 59) CACTGTAC 1 chr3R:10638760-10638880 ( 52) CACTGTAC 1 chrX:18246959-18247079 ( 103) CACTGTCG 1 chr2L:12346276-12346396 ( 57) CACTGTAC 1 chrX:16595648-16595768 ( 58) CACTGTAC 1 chr3L:16563477-16563597 ( 29) CACTGTAC 1 chr3R:5114133-5114253 ( 51) CATTGTGC 1 chr3R:10588735-10588855 ( 51) CACTGTCC 1 chrX:8884133-8884253 ( 62) CACTGTCC 1 chr3L:3352618-3352738 ( 71) CACTGTCC 1 chr2R:18872148-18872268 ( 55) CACGGTGG 1 chr2R:19469001-19469121 ( 80) CAGTGTGG 1 chr3R:5208093-5208213 ( 94) CAGTGTGG 1 chr3R:24298612-24298732 ( 44) TACCGTGG 1 chr3L:7837252-7837372 ( 86) TACAATGG 1 chr2L:2901202-2901322 ( 32) TACAATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.68516 E= 9.1e-189 -295 188 -247 -134 188 -1406 -1406 -1406 -1406 211 -428 -300 101 -324 -528 60 -253 -1406 207 -1406 -1406 -1406 -1406 183 -295 -324 205 -1406 -1406 93 135 -1406 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 171 E= 9.1e-189 0.035088 0.812865 0.040936 0.111111 1.000000 0.000000 0.000000 0.000000 0.000000 0.953216 0.011696 0.035088 0.543860 0.023392 0.005848 0.426901 0.046784 0.000000 0.953216 0.000000 0.000000 0.000000 0.000000 1.000000 0.035088 0.023392 0.941520 0.000000 0.000000 0.421053 0.578947 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACWGTGS MEME-1 regular expression -------------------------------------------------------------------------------- CAC[AT]GTG[GC] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCACTGT MEME-2 width = 8 sites = 44 llr = 404 E-value = 1.3e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCACTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:a:::: pos.-specific C 89a:81:: probability G ::::::a: matrix T 2:::39:a bits 2.2 * 2.0 ** * 1.7 *** ** 1.5 *** ** Relative 1.3 ******** Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCACTGT consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10260743-10260863 41 1.16e-05 AATATATGTG CCCACTGT TTAATACATA chr2R:24305671-24305791 38 1.16e-05 CCGCATTGGC CCCACTGT GCGCACTGTG chr3R:14511262-14511382 1 1.16e-05 . CCCACTGT TACCATTGCT chr2L:14698169-14698289 81 1.16e-05 GTGATCTTGG CCCACTGT ATTTCCGACA chr3L:11173230-11173350 87 1.16e-05 ACGAAATGAT CCCACTGT AACCAACTGC chr2L:11432397-11432517 48 1.16e-05 TCGAATTCAG CCCACTGT AACGATGATG chr3R:10588735-10588855 89 1.16e-05 gtcccaccgt cccactgt ctgtttgtcA chrX:9029934-9030054 49 1.16e-05 AGTAAATCAG CCCACTGT ACCCACTGTG chrX:8884133-8884253 82 1.16e-05 GCCCACGAGG CCCACTGT CCATGGCTTT chr2R:21897811-21897931 72 1.16e-05 AAGAAGATTA CCCACTGT ACAAGTTGCT chr3R:21471088-21471208 41 1.16e-05 GCCCAGTTGG CCCACTGT CACCGTTGCG chr3R:16893463-16893583 38 1.16e-05 CACCCATTTG CCCACTGT AAAGTGCCCA chr3L:22276150-22276270 35 1.16e-05 TATTCGCGTT CCCACTGT GCGGGCACAG chr3L:2882495-2882615 95 1.16e-05 GTTGAAAATA CCCACTGT GTGTAGGTTG chr3R:15410599-15410719 84 1.16e-05 GCGAATCAGG CCCACTGT GCGGCCCGTG chr2R:22532130-22532250 27 1.16e-05 GACGATGCGA CCCACTGT GCCACCACTG chr2L:16415525-16415645 51 1.16e-05 ATCCATTAGG CCCACTGT GCACAGTGGG chr2L:2883637-2883757 12 2.63e-05 TGATGAAATT CCCATTGT TTAAACAAAT chr4:835392-835512 62 2.63e-05 GTAGCACAGG CCCATTGT ATAAATTTCG chr3R:30919802-30919922 76 2.63e-05 ATTTCTTGTG CCCATTGT ACTCGATGCA chr3L:17563284-17563404 70 2.63e-05 CCCGTTCTGT CCCATTGT ACCCAGATCG chrX:13303901-13304021 33 2.63e-05 ACCGATTCGT CCCATTGT GCGTGACTGT chr2L:12346276-12346396 91 2.63e-05 GCAGACGTGA CCCATTGT ATGTGTCGCA chrX:5086313-5086433 51 4.11e-05 TTCGTTCGGC TCCACTGT TTAGTTAGTT chr3L:968373-968493 110 4.11e-05 ACTATGTGGC TCCACTGT TCG chr3L:8547879-8547999 40 4.11e-05 CACTCCATGC TCCACTGT GTGGGCAGTG chrX:17790579-17790699 59 4.11e-05 GCCGATCCGC TCCACTGT GCACGCTACG chrX:15709826-15709946 56 4.11e-05 CTCAAAAATT TCCACTGT GCTGTCTGCG chr3L:14122167-14122287 6 4.11e-05 GCCAC TCCACTGT AGCCGGTGTA chrX:10234059-10234179 16 4.11e-05 CTTTTGACAT TCCACTGT GCATTTCGAA chrX:277971-278091 37 5.02e-05 AAGAATTGAC CCCACCGT GTTTTTTTAC chrX:5970801-5970921 42 5.02e-05 CTTTCCCAGC CCCACCGT GCACAGTGGG chr3L:12093806-12093926 51 6.44e-05 GTGCCGCCCG CACACTGT GCCGAAAAAA chrX:19751806-19751926 6 6.44e-05 TCTGC CACACTGT ATGCACTTCC chr3R:8712130-8712250 60 6.44e-05 ATTGATTCGC CACACTGT ACCTGTCCCA chr3R:24298612-24298732 11 8.31e-05 AACAACAAAT TCCATTGT TAGCATTGAG chrX:8674797-8674917 67 8.31e-05 TTGTTCAACG TCCATTGT CAATTTTTCC chrX:2024929-2025049 92 1.09e-04 AGTCTAATTC CCCACTTT TGTCTAGTTA chr3L:17657089-17657209 87 1.09e-04 ACACGCAGAC CCCATCGT ACGGATATAT chr2L:21329670-21329790 92 1.09e-04 gggaaattta cccacttt ttctggctaa chr2R:23547332-23547452 48 1.09e-04 CGATTTTAAC CCCATCGT ATGATTATGA chr3L:10906415-10906535 52 1.30e-04 GCTGATATGG CCCACGGT GCACAGTGGC chr2L:13548775-13548895 72 1.44e-04 AACTGTAGTG ACCACTGT GCGGCAGCAG chr3R:19467588-19467708 72 1.62e-04 CGTACATACC CACATTGT TTGTCTACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10260743-10260863 1.2e-05 40_[+2]_72 chr2R:24305671-24305791 1.2e-05 37_[+2]_75 chr3R:14511262-14511382 1.2e-05 [+2]_112 chr2L:14698169-14698289 1.2e-05 80_[+2]_32 chr3L:11173230-11173350 1.2e-05 86_[+2]_26 chr2L:11432397-11432517 1.2e-05 47_[+2]_65 chr3R:10588735-10588855 1.2e-05 88_[+2]_24 chrX:9029934-9030054 1.2e-05 48_[+2]_64 chrX:8884133-8884253 1.2e-05 81_[+2]_31 chr2R:21897811-21897931 1.2e-05 71_[+2]_41 chr3R:21471088-21471208 1.2e-05 40_[+2]_72 chr3R:16893463-16893583 1.2e-05 37_[+2]_75 chr3L:22276150-22276270 1.2e-05 34_[+2]_78 chr3L:2882495-2882615 1.2e-05 94_[+2]_18 chr3R:15410599-15410719 1.2e-05 83_[+2]_29 chr2R:22532130-22532250 1.2e-05 26_[+2]_86 chr2L:16415525-16415645 1.2e-05 50_[+2]_62 chr2L:2883637-2883757 2.6e-05 11_[+2]_101 chr4:835392-835512 2.6e-05 61_[+2]_51 chr3R:30919802-30919922 2.6e-05 75_[+2]_37 chr3L:17563284-17563404 2.6e-05 69_[+2]_43 chrX:13303901-13304021 2.6e-05 32_[+2]_80 chr2L:12346276-12346396 2.6e-05 90_[+2]_22 chrX:5086313-5086433 4.1e-05 50_[+2]_62 chr3L:968373-968493 4.1e-05 109_[+2]_3 chr3L:8547879-8547999 4.1e-05 39_[+2]_73 chrX:17790579-17790699 4.1e-05 58_[+2]_54 chrX:15709826-15709946 4.1e-05 55_[+2]_57 chr3L:14122167-14122287 4.1e-05 5_[+2]_107 chrX:10234059-10234179 4.1e-05 15_[+2]_97 chrX:277971-278091 5e-05 36_[+2]_76 chrX:5970801-5970921 5e-05 41_[+2]_71 chr3L:12093806-12093926 6.4e-05 50_[+2]_62 chrX:19751806-19751926 6.4e-05 5_[+2]_107 chr3R:8712130-8712250 6.4e-05 59_[+2]_53 chr3R:24298612-24298732 8.3e-05 10_[+2]_102 chrX:8674797-8674917 8.3e-05 66_[+2]_46 chrX:2024929-2025049 0.00011 91_[+2]_21 chr3L:17657089-17657209 0.00011 86_[+2]_26 chr2L:21329670-21329790 0.00011 91_[+2]_21 chr2R:23547332-23547452 0.00011 47_[+2]_65 chr3L:10906415-10906535 0.00013 51_[+2]_61 chr2L:13548775-13548895 0.00014 71_[+2]_41 chr3R:19467588-19467708 0.00016 71_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCACTGT width=8 seqs=44 chr2L:10260743-10260863 ( 41) CCCACTGT 1 chr2R:24305671-24305791 ( 38) CCCACTGT 1 chr3R:14511262-14511382 ( 1) CCCACTGT 1 chr2L:14698169-14698289 ( 81) CCCACTGT 1 chr3L:11173230-11173350 ( 87) CCCACTGT 1 chr2L:11432397-11432517 ( 48) CCCACTGT 1 chr3R:10588735-10588855 ( 89) CCCACTGT 1 chrX:9029934-9030054 ( 49) CCCACTGT 1 chrX:8884133-8884253 ( 82) CCCACTGT 1 chr2R:21897811-21897931 ( 72) CCCACTGT 1 chr3R:21471088-21471208 ( 41) CCCACTGT 1 chr3R:16893463-16893583 ( 38) CCCACTGT 1 chr3L:22276150-22276270 ( 35) CCCACTGT 1 chr3L:2882495-2882615 ( 95) CCCACTGT 1 chr3R:15410599-15410719 ( 84) CCCACTGT 1 chr2R:22532130-22532250 ( 27) CCCACTGT 1 chr2L:16415525-16415645 ( 51) CCCACTGT 1 chr2L:2883637-2883757 ( 12) CCCATTGT 1 chr4:835392-835512 ( 62) CCCATTGT 1 chr3R:30919802-30919922 ( 76) CCCATTGT 1 chr3L:17563284-17563404 ( 70) CCCATTGT 1 chrX:13303901-13304021 ( 33) CCCATTGT 1 chr2L:12346276-12346396 ( 91) CCCATTGT 1 chrX:5086313-5086433 ( 51) TCCACTGT 1 chr3L:968373-968493 ( 110) TCCACTGT 1 chr3L:8547879-8547999 ( 40) TCCACTGT 1 chrX:17790579-17790699 ( 59) TCCACTGT 1 chrX:15709826-15709946 ( 56) TCCACTGT 1 chr3L:14122167-14122287 ( 6) TCCACTGT 1 chrX:10234059-10234179 ( 16) TCCACTGT 1 chrX:277971-278091 ( 37) CCCACCGT 1 chrX:5970801-5970921 ( 42) CCCACCGT 1 chr3L:12093806-12093926 ( 51) CACACTGT 1 chrX:19751806-19751926 ( 6) CACACTGT 1 chr3R:8712130-8712250 ( 60) CACACTGT 1 chr3R:24298612-24298732 ( 11) TCCATTGT 1 chrX:8674797-8674917 ( 67) TCCATTGT 1 chrX:2024929-2025049 ( 92) CCCACTTT 1 chr3L:17657089-17657209 ( 87) CCCATCGT 1 chr2L:21329670-21329790 ( 92) CCCACTTT 1 chr2R:23547332-23547452 ( 48) CCCATCGT 1 chr3L:10906415-10906535 ( 52) CCCACGGT 1 chr2L:13548775-13548895 ( 72) ACCACTGT 1 chr3R:19467588-19467708 ( 72) CACATTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3519 E= 1.3e-019 -357 181 -1210 -46 -157 204 -1210 -1210 -1210 218 -1210 -1210 188 -1210 -1210 -1210 -1210 176 -1210 -17 -1210 -128 -332 166 -1210 -1210 207 -263 -1210 -1210 -1210 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.3e-019 0.022727 0.772727 0.000000 0.204545 0.090909 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.090909 0.022727 0.886364 0.000000 0.000000 0.954545 0.045455 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTGT MEME-2 regular expression -------------------------------------------------------------------------------- [CT]CCA[CT]TGT -------------------------------------------------------------------------------- Time 13.38 secs. ******************************************************************************** ******************************************************************************** MOTIF ACARTGGG MEME-3 width = 8 sites = 28 llr = 267 E-value = 4.0e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACARTGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:74:::: pos.-specific C :a2::::: probability G ::16:aaa matrix T ::::a::: bits 2.2 ** 2.0 ** *** 1.7 ** **** 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ** ***** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAGTGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARTGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18240719-18240839 62 1.21e-05 ggacagtggg acagtggg acaatgggac chr3L:11365784-11365904 59 1.21e-05 CAACCGACGG ACAGTGGG ACGCATTGGA chr2L:8545757-8545877 105 1.21e-05 AGATACGGCT ACAGTGGG AACCACAG chr2L:3083717-3083837 58 1.21e-05 TGAATGCTGC ACAGTGGG ACAGCGGGAC chr3R:4897282-4897402 53 1.21e-05 CGTCTGAGCG ACAGTGGG CCGCAGGGCG chr3R:22368464-22368584 94 1.21e-05 GGACAGTTGG ACAGTGGG CTCTTTTCCG chr3R:10624314-10624434 36 1.21e-05 GGTCGGCGGG ACAGTGGG ACAGACGGAT chr3L:16016883-16017003 79 1.21e-05 TGACCCGCGC ACAGTGGG CTTGGTAGCA chr3R:9480723-9480843 51 1.21e-05 TGGTACTGGC ACAGTGGG TCGCTCTGGC chrX:3475188-3475308 79 1.21e-05 TGCGCGGGGC ACAGTGGG CAGTGGCAAT chrX:5970801-5970921 52 1.21e-05 CCCACCGTGC ACAGTGGG CCGTATGGGC chr3L:6919314-6919434 35 1.21e-05 CCCCgggcat acagtggg cacacagtgg chr2R:17851597-17851717 31 2.66e-05 tcACACGCTG ACAATGGG CGCATTCAGC chr3R:8956507-8956627 58 2.66e-05 GGCGCGCCGC ACAATGGG CCTCTATTGT chr3R:27205416-27205536 54 2.66e-05 AAATTGAGCG ACAATGGG CGCTGGACAA chr2L:19802290-19802410 54 2.66e-05 CTAAAAGTAG ACAATGGG TCATTTTAAT chr3R:16878605-16878725 64 2.66e-05 CGCAGAACTG ACAATGGG CCCACTGTGC chr2R:14014995-14015115 65 2.66e-05 TGCGTCTTGC ACAATGGG CCAAATTGCG chr2L:13203260-13203380 17 3.64e-05 ATCCTGTGTG ACCGTGGG AAACACCGTA chrX:18246959-18247079 26 3.64e-05 GGAAAACTTT ACCGTGGG CAAGTATGGG chrX:16595648-16595768 30 4.66e-05 TCGTTCGAGT ACGGTGGG CACCACAGAC chr2L:20097892-20098012 61 4.66e-05 gagtgagtgt ACGGTGGG GCAACCTTAA chrX:13141353-13141473 53 5.84e-05 CACTGGTTGC ACCATGGG CCAAAGTGAC chr2R:18872148-18872268 64 5.84e-05 CCACGGTGGC ACCATGGG CGACAAACCA chrX:17742068-17742188 62 5.84e-05 GAAGCGTCGC ACCATGGG CTTCATAGCA chrX:18207740-18207860 100 7.05e-05 AATTCCGTGG ACGATGGG CCGAAACGCC chr2L:3845826-3845946 51 9.98e-05 TGGAGTTGGA AAAGTGGG ATTTCCGAAT chr2R:7724037-7724157 62 9.98e-05 AAGGCGAACG ACAGTGGA AAACTGGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARTGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18240719-18240839 1.2e-05 61_[+3]_51 chr3L:11365784-11365904 1.2e-05 58_[+3]_54 chr2L:8545757-8545877 1.2e-05 104_[+3]_8 chr2L:3083717-3083837 1.2e-05 57_[+3]_55 chr3R:4897282-4897402 1.2e-05 52_[+3]_60 chr3R:22368464-22368584 1.2e-05 93_[+3]_19 chr3R:10624314-10624434 1.2e-05 35_[+3]_77 chr3L:16016883-16017003 1.2e-05 78_[+3]_34 chr3R:9480723-9480843 1.2e-05 50_[+3]_62 chrX:3475188-3475308 1.2e-05 78_[+3]_34 chrX:5970801-5970921 1.2e-05 51_[+3]_61 chr3L:6919314-6919434 1.2e-05 34_[+3]_78 chr2R:17851597-17851717 2.7e-05 30_[+3]_82 chr3R:8956507-8956627 2.7e-05 57_[+3]_55 chr3R:27205416-27205536 2.7e-05 53_[+3]_59 chr2L:19802290-19802410 2.7e-05 53_[+3]_59 chr3R:16878605-16878725 2.7e-05 63_[+3]_49 chr2R:14014995-14015115 2.7e-05 64_[+3]_48 chr2L:13203260-13203380 3.6e-05 16_[+3]_96 chrX:18246959-18247079 3.6e-05 25_[+3]_87 chrX:16595648-16595768 4.7e-05 29_[+3]_83 chr2L:20097892-20098012 4.7e-05 60_[+3]_52 chrX:13141353-13141473 5.8e-05 52_[+3]_60 chr2R:18872148-18872268 5.8e-05 63_[+3]_49 chrX:17742068-17742188 5.8e-05 61_[+3]_51 chrX:18207740-18207860 7e-05 99_[+3]_13 chr2L:3845826-3845946 0.0001 50_[+3]_62 chr2R:7724037-7724157 0.0001 61_[+3]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARTGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACARTGGG width=8 seqs=28 chr3L:18240719-18240839 ( 62) ACAGTGGG 1 chr3L:11365784-11365904 ( 59) ACAGTGGG 1 chr2L:8545757-8545877 ( 105) ACAGTGGG 1 chr2L:3083717-3083837 ( 58) ACAGTGGG 1 chr3R:4897282-4897402 ( 53) ACAGTGGG 1 chr3R:22368464-22368584 ( 94) ACAGTGGG 1 chr3R:10624314-10624434 ( 36) ACAGTGGG 1 chr3L:16016883-16017003 ( 79) ACAGTGGG 1 chr3R:9480723-9480843 ( 51) ACAGTGGG 1 chrX:3475188-3475308 ( 79) ACAGTGGG 1 chrX:5970801-5970921 ( 52) ACAGTGGG 1 chr3L:6919314-6919434 ( 35) ACAGTGGG 1 chr2R:17851597-17851717 ( 31) ACAATGGG 1 chr3R:8956507-8956627 ( 58) ACAATGGG 1 chr3R:27205416-27205536 ( 54) ACAATGGG 1 chr2L:19802290-19802410 ( 54) ACAATGGG 1 chr3R:16878605-16878725 ( 64) ACAATGGG 1 chr2R:14014995-14015115 ( 65) ACAATGGG 1 chr2L:13203260-13203380 ( 17) ACCGTGGG 1 chrX:18246959-18247079 ( 26) ACCGTGGG 1 chrX:16595648-16595768 ( 30) ACGGTGGG 1 chr2L:20097892-20098012 ( 61) ACGGTGGG 1 chrX:13141353-13141473 ( 53) ACCATGGG 1 chr2R:18872148-18872268 ( 64) ACCATGGG 1 chrX:17742068-17742188 ( 62) ACCATGGG 1 chrX:18207740-18207860 ( 100) ACGATGGG 1 chr2L:3845826-3845946 ( 51) AAAGTGGG 1 chr2R:7724037-7724157 ( 62) ACAGTGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARTGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5834 E= 4.0e-007 188 -1145 -1145 -1145 -292 213 -1145 -1145 140 -31 -108 -1145 40 -1145 150 -1145 -1145 -1145 -1145 183 -1145 -1145 214 -1145 -1145 -1145 214 -1145 -292 -1145 209 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARTGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.0e-007 1.000000 0.000000 0.000000 0.000000 0.035714 0.964286 0.000000 0.000000 0.714286 0.178571 0.107143 0.000000 0.357143 0.000000 0.642857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.035714 0.000000 0.964286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACARTGGG MEME-3 regular expression -------------------------------------------------------------------------------- ACA[GA]TGGG -------------------------------------------------------------------------------- Time 19.30 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-4 width = 8 sites = 26 llr = 234 E-value = 9.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :81a27:a pos.-specific C a:9:8:a: probability G :2:::1:: matrix T :::::2:: bits 2.2 * * 2.0 * * 1.7 * ** ** 1.5 * *** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (13.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:11292507-11292627 17 1.29e-05 CCAGTTGACA CACACACA CACTGGCACA chr3R:5599698-5599818 36 1.29e-05 CTCTTTTTCA CACACACA TACCCACTGT chr3R:8956507-8956627 2 1.29e-05 a cacacaca gacTTGGAAG chr2L:17249538-17249658 22 1.29e-05 cacgcacaaa cacacaca tcacaTTAAT chr3L:11217941-11218061 14 1.29e-05 GCCTGGCACT CACACACA AACATACCCT chrX:18137615-18137735 34 1.29e-05 AAAAATAACA CACACACA CACGCGCTCG chr3R:18371514-18371634 88 1.29e-05 cacacacaga cacacaca aatacacaAA chr2R:7724037-7724157 40 1.29e-05 CCCTCGCACG CACACACA AAAAAAGGCG chr3R:12644956-12645076 104 3.70e-05 CCACTAAAAC CACACTCA TATATCTTC chr2L:5567156-5567276 34 3.70e-05 GCCGAAGACA CACACTCA AAAAGCGTGA chr2L:6795310-6795430 25 3.70e-05 TATACATACA CGCACACA GGGGGTGGGT chr2L:5610225-5610345 78 3.70e-05 TCAATGAAAC CACACTCA ACAGATGAAA chrX:9601509-9601629 46 3.70e-05 GGGCGAAAAG CGCACACA TACGCACGCA chr3R:20561024-20561144 29 3.70e-05 ATGCACTTTG CGCACACA aacaacaacg chr2L:21632164-21632284 92 3.70e-05 TCCACCCCGA CACACTCA CACAGGCGCT chrX:15568528-15568648 72 5.28e-05 ATTTATTCGG CACAAACA ACCTGATTAT chr3R:5114133-5114253 61 5.28e-05 CATTGTGCGG CACAAACA TCTTATGTAC chr2R:21846978-21847098 46 5.28e-05 GCAGAGCAAA CACAAACA GAATGCTGAG chr3L:17657089-17657209 76 6.35e-05 CCGCTGCTAT CACACGCA GACCCCATCG chr3L:14122167-14122287 41 6.35e-05 CTCTCGCTCG CACACGCA CGCACCGTCT chr3L:4107271-4107391 18 7.47e-05 TTAATAACAG CGCACTCA ATTGGATTGA chr2L:18981643-18981763 69 9.05e-05 ATGGCCTGCG CAAACACA GGTATGTAAA chr2L:20464477-20464597 6 9.05e-05 AATTA CAAACACA TTTTTTGAAA chr2R:22533057-22533177 21 1.12e-04 CCGGAAATGA CACCCACA CAACCCACTG chrX:8884133-8884253 35 1.12e-04 ATACATTAGC CACACACG TTTCCCCCCC chr2R:16921491-16921611 29 1.41e-04 TCAATTAAGA CGCAAACA AAAACCGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11292507-11292627 1.3e-05 16_[+4]_96 chr3R:5599698-5599818 1.3e-05 35_[+4]_77 chr3R:8956507-8956627 1.3e-05 1_[+4]_111 chr2L:17249538-17249658 1.3e-05 21_[+4]_91 chr3L:11217941-11218061 1.3e-05 13_[+4]_99 chrX:18137615-18137735 1.3e-05 33_[+4]_79 chr3R:18371514-18371634 1.3e-05 87_[+4]_25 chr2R:7724037-7724157 1.3e-05 39_[+4]_73 chr3R:12644956-12645076 3.7e-05 103_[+4]_9 chr2L:5567156-5567276 3.7e-05 33_[+4]_79 chr2L:6795310-6795430 3.7e-05 24_[+4]_88 chr2L:5610225-5610345 3.7e-05 77_[+4]_35 chrX:9601509-9601629 3.7e-05 45_[+4]_67 chr3R:20561024-20561144 3.7e-05 28_[+4]_84 chr2L:21632164-21632284 3.7e-05 91_[+4]_21 chrX:15568528-15568648 5.3e-05 71_[+4]_41 chr3R:5114133-5114253 5.3e-05 60_[+4]_52 chr2R:21846978-21847098 5.3e-05 45_[+4]_67 chr3L:17657089-17657209 6.4e-05 75_[+4]_37 chr3L:14122167-14122287 6.4e-05 40_[+4]_72 chr3L:4107271-4107391 7.5e-05 17_[+4]_95 chr2L:18981643-18981763 9e-05 68_[+4]_44 chr2L:20464477-20464597 9e-05 5_[+4]_107 chr2R:22533057-22533177 0.00011 20_[+4]_92 chrX:8884133-8884253 0.00011 34_[+4]_78 chr2R:16921491-16921611 0.00014 28_[+4]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=26 chr3L:11292507-11292627 ( 17) CACACACA 1 chr3R:5599698-5599818 ( 36) CACACACA 1 chr3R:8956507-8956627 ( 2) CACACACA 1 chr2L:17249538-17249658 ( 22) CACACACA 1 chr3L:11217941-11218061 ( 14) CACACACA 1 chrX:18137615-18137735 ( 34) CACACACA 1 chr3R:18371514-18371634 ( 88) CACACACA 1 chr2R:7724037-7724157 ( 40) CACACACA 1 chr3R:12644956-12645076 ( 104) CACACTCA 1 chr2L:5567156-5567276 ( 34) CACACTCA 1 chr2L:6795310-6795430 ( 25) CGCACACA 1 chr2L:5610225-5610345 ( 78) CACACTCA 1 chrX:9601509-9601629 ( 46) CGCACACA 1 chr3R:20561024-20561144 ( 29) CGCACACA 1 chr2L:21632164-21632284 ( 92) CACACTCA 1 chrX:15568528-15568648 ( 72) CACAAACA 1 chr3R:5114133-5114253 ( 61) CACAAACA 1 chr2R:21846978-21847098 ( 46) CACAAACA 1 chr3L:17657089-17657209 ( 76) CACACGCA 1 chr3L:14122167-14122287 ( 41) CACACGCA 1 chr3L:4107271-4107391 ( 18) CGCACTCA 1 chr2L:18981643-18981763 ( 69) CAAACACA 1 chr2L:20464477-20464597 ( 6) CAAACACA 1 chr2R:22533057-22533177 ( 21) CACCCACA 1 chrX:8884133-8884253 ( 35) CACACACG 1 chr2R:16921491-16921611 ( 29) CGCAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 9.7e+001 -1134 218 -1134 -1134 158 -1134 -24 -1134 -181 206 -1134 -1134 183 -252 -1134 -1134 -82 194 -1134 -1134 143 -1134 -156 -55 -1134 218 -1134 -1134 183 -1134 -256 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 9.7e+001 0.000000 1.000000 0.000000 0.000000 0.807692 0.000000 0.192308 0.000000 0.076923 0.923077 0.000000 0.000000 0.961538 0.038462 0.000000 0.000000 0.153846 0.846154 0.000000 0.000000 0.730769 0.000000 0.076923 0.192308 0.000000 1.000000 0.000000 0.000000 0.961538 0.000000 0.038462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-4 regular expression -------------------------------------------------------------------------------- CACACACA -------------------------------------------------------------------------------- Time 25.11 secs. ******************************************************************************** ******************************************************************************** MOTIF GCRGCWGC MEME-5 width = 8 sites = 33 llr = 277 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRGCWGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::4::3:: pos.-specific C :a2281:a probability G a:38::a: matrix T ::2:26:: bits 2.2 ** ** 2.0 ** ** 1.7 ** ** 1.5 ** * ** Relative 1.3 ** ** ** Entropy 1.1 ** ** ** (12.1 bits) 0.9 ** ** ** 0.7 ** ** ** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel GCAGCTGC consensus G TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCWGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18240719-18240839 19 9.61e-06 CTGCAGCGTT GCAGCTGC ACTCCACAGT chr2L:12679476-12679596 23 9.61e-06 TCCTTTTTGG GCAGCTGC TGCCCTTGAG chr3R:17708951-17709071 4 9.61e-06 TGT GCAGCTGC AAGGGAAAAC chrX:11155086-11155206 28 9.61e-06 TAGGAGCACC GCAGCTGC AGCACCAACA chr2L:11470161-11470281 93 9.61e-06 CGTTGCAGTT GCAGCTGC AGCCGCCTGC chr3L:13925449-13925569 8 1.77e-05 AAGGCAG GCGGCTGC AGCGGAGAGC chr2R:16921491-16921611 107 1.77e-05 ACATCCAAAA GCGGCTGC GACGCG chr3L:11293479-11293599 111 2.69e-05 GGCGGCGACA GCAGCAGC GC chr3L:739573-739693 32 3.48e-05 tgttgttgtt gccgctgc tgctTGGCCA chr3L:17657089-17657209 65 3.48e-05 ATTATTTTTA GCCGCTGC TATCACACGC chrX:17790579-17790699 12 3.48e-05 GTTTGTCGCC GCCGCTGC ACTGAGTTCA chr2L:13548775-13548895 80 4.25e-05 TGACCACTGT GCGGCAGC AGTTGAGCTT chr2L:1913132-1913252 32 4.25e-05 GTCAACATCC GCGGCAGC TGTTGAATTT chr3R:15580562-15580682 111 4.25e-05 AAAACTGCGA GCGGCAGC CA chr2L:12498674-12498794 42 5.25e-05 tgttgttgct gctgctgc tgGTCGTCGC chrX:19751806-19751926 59 6.01e-05 GATTCGTCCA GCAGCCGC GCACAGTGGG chrX:17509743-17509863 49 8.92e-05 GGCAATGAAT GCACCTGC ATTGTCGTGG chr2R:19469001-19469121 60 8.92e-05 CAAGGGGGCG GCACCTGC GCCGCCCAAG chr2R:22142114-22142234 37 8.92e-05 CCACCGCGTT GCAGTTGC ATCTTCCAAG chr3L:16563477-16563597 109 8.92e-05 TATACATGCA GCAGTTGC CTTG chr3L:15507492-15507612 25 9.56e-05 TAGCGTTCTT GCGGCCGC TCTCCTTGAT chrX:5690959-5691079 15 1.05e-04 TACGAGGAGT GCTGCAGC TGTGTGGGTA chr3L:7953261-7953381 59 1.23e-04 ACCCTGGGCT GCGGTTGC TGATGCTGCG chr3R:24301585-24301705 15 1.50e-04 GAAGCCAAAT GCAGTAGC TTCTGGTGAC chrX:14488067-14488187 87 1.50e-04 TTTGAGAGCC GCACCAGC TTGGCATCGA chr2R:18872148-18872268 3 1.50e-04 CG GCACCAGC GGCAACGAGC chr3L:10906415-10906535 16 1.50e-04 ATCAGAGAAC GCCGCCGC CGAAGTGAGA chr2L:21330875-21330995 66 1.76e-04 CCTTGTGGGT GCCCCTGC CCTATGGCTC chr3L:16896587-16896707 38 1.76e-04 GGTTCGCAAA GCTGCCGC TGGATGGCGC chrX:9029934-9030054 113 1.93e-04 CGTTTAGAAA GCGCCAGC chrX:8674797-8674917 99 1.93e-04 TGCAGTAGTT GCGGTagc gagagagaga chr2L:21219822-21219942 9 2.16e-04 AGTCATCA GCTGTTGC GCATAAACAA chr3R:18104450-18104570 21 2.16e-04 TCTGGTGGAA GCTGTTGC CACTTCCTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCWGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18240719-18240839 9.6e-06 18_[+5]_94 chr2L:12679476-12679596 9.6e-06 22_[+5]_90 chr3R:17708951-17709071 9.6e-06 3_[+5]_109 chrX:11155086-11155206 9.6e-06 27_[+5]_85 chr2L:11470161-11470281 9.6e-06 92_[+5]_20 chr3L:13925449-13925569 1.8e-05 7_[+5]_105 chr2R:16921491-16921611 1.8e-05 106_[+5]_6 chr3L:11293479-11293599 2.7e-05 110_[+5]_2 chr3L:739573-739693 3.5e-05 31_[+5]_81 chr3L:17657089-17657209 3.5e-05 64_[+5]_48 chrX:17790579-17790699 3.5e-05 11_[+5]_101 chr2L:13548775-13548895 4.3e-05 79_[+5]_33 chr2L:1913132-1913252 4.3e-05 31_[+5]_81 chr3R:15580562-15580682 4.3e-05 110_[+5]_2 chr2L:12498674-12498794 5.3e-05 41_[+5]_71 chrX:19751806-19751926 6e-05 58_[+5]_54 chrX:17509743-17509863 8.9e-05 48_[+5]_64 chr2R:19469001-19469121 8.9e-05 59_[+5]_53 chr2R:22142114-22142234 8.9e-05 36_[+5]_76 chr3L:16563477-16563597 8.9e-05 108_[+5]_4 chr3L:15507492-15507612 9.6e-05 24_[+5]_88 chrX:5690959-5691079 0.00011 14_[+5]_98 chr3L:7953261-7953381 0.00012 58_[+5]_54 chr3R:24301585-24301705 0.00015 14_[+5]_98 chrX:14488067-14488187 0.00015 86_[+5]_26 chr2R:18872148-18872268 0.00015 2_[+5]_110 chr3L:10906415-10906535 0.00015 15_[+5]_97 chr2L:21330875-21330995 0.00018 65_[+5]_47 chr3L:16896587-16896707 0.00018 37_[+5]_75 chrX:9029934-9030054 0.00019 112_[+5] chrX:8674797-8674917 0.00019 98_[+5]_14 chr2L:21219822-21219942 0.00022 8_[+5]_104 chr3R:18104450-18104570 0.00022 20_[+5]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCWGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRGCWGC width=8 seqs=33 chr3L:18240719-18240839 ( 19) GCAGCTGC 1 chr2L:12679476-12679596 ( 23) GCAGCTGC 1 chr3R:17708951-17709071 ( 4) GCAGCTGC 1 chrX:11155086-11155206 ( 28) GCAGCTGC 1 chr2L:11470161-11470281 ( 93) GCAGCTGC 1 chr3L:13925449-13925569 ( 8) GCGGCTGC 1 chr2R:16921491-16921611 ( 107) GCGGCTGC 1 chr3L:11293479-11293599 ( 111) GCAGCAGC 1 chr3L:739573-739693 ( 32) GCCGCTGC 1 chr3L:17657089-17657209 ( 65) GCCGCTGC 1 chrX:17790579-17790699 ( 12) GCCGCTGC 1 chr2L:13548775-13548895 ( 80) GCGGCAGC 1 chr2L:1913132-1913252 ( 32) GCGGCAGC 1 chr3R:15580562-15580682 ( 111) GCGGCAGC 1 chr2L:12498674-12498794 ( 42) GCTGCTGC 1 chrX:19751806-19751926 ( 59) GCAGCCGC 1 chrX:17509743-17509863 ( 49) GCACCTGC 1 chr2R:19469001-19469121 ( 60) GCACCTGC 1 chr2R:22142114-22142234 ( 37) GCAGTTGC 1 chr3L:16563477-16563597 ( 109) GCAGTTGC 1 chr3L:15507492-15507612 ( 25) GCGGCCGC 1 chrX:5690959-5691079 ( 15) GCTGCAGC 1 chr3L:7953261-7953381 ( 59) GCGGTTGC 1 chr3R:24301585-24301705 ( 15) GCAGTAGC 1 chrX:14488067-14488187 ( 87) GCACCAGC 1 chr2R:18872148-18872268 ( 3) GCACCAGC 1 chr3L:10906415-10906535 ( 16) GCCGCCGC 1 chr2L:21330875-21330995 ( 66) GCCCCTGC 1 chr3L:16896587-16896707 ( 38) GCTGCCGC 1 chrX:9029934-9030054 ( 113) GCGCCAGC 1 chrX:8674797-8674917 ( 99) GCGGTAGC 1 chr2L:21219822-21219942 ( 9) GCTGTTGC 1 chr3R:18104450-18104570 ( 21) GCTGTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCWGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 2.4e+004 -1169 -1169 214 -1169 -1169 218 -1169 -1169 65 -54 26 -89 -1169 -28 185 -1169 -1169 183 -1169 -41 16 -87 -1169 103 -1169 -1169 214 -1169 -1169 218 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCWGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 2.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.424242 0.151515 0.272727 0.151515 0.000000 0.181818 0.818182 0.000000 0.000000 0.787879 0.000000 0.212121 0.303030 0.121212 0.000000 0.575758 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGCWGC MEME-5 regular expression -------------------------------------------------------------------------------- GC[AG]G[CT][TA]GC -------------------------------------------------------------------------------- Time 30.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23547332-23547452 8.22e-03 69_[+1(4.74e-05)]_43 chr3L:6919314-6919434 1.65e-04 34_[+3(1.21e-05)]_2_[+1(1.18e-05)]_\ 3_[+3(1.21e-05)]_57 chrX:5970801-5970921 2.14e-05 41_[+2(5.02e-05)]_1_[+1(1.18e-05)]_\ 19_[+1(1.18e-05)]_35 chr3L:16563477-16563597 9.77e-04 26_[+2(1.16e-05)]_74_[+5(8.92e-05)]_\ 4 chr3L:21878724-21878844 7.45e-02 120 chr2R:7724037-7724157 5.08e-07 12_[+1(1.18e-05)]_19_[+4(1.29e-05)]_\ 14_[+3(9.98e-05)]_51 chr2L:16415525-16415645 7.84e-07 50_[+2(1.16e-05)]_1_[+1(1.18e-05)]_\ 53 chr2R:22532130-22532250 1.66e-04 26_[+2(1.16e-05)]_5_[+1(3.55e-05)]_\ 73 chr3R:15410599-15410719 6.90e-07 46_[+1(1.18e-05)]_29_[+2(1.16e-05)]_\ 29 chr2R:6119627-6119747 2.00e-03 10_[+1(1.18e-05)]_102 chr2L:21632164-21632284 5.78e-03 91_[+4(3.70e-05)]_21 chr2R:14014995-14015115 4.64e-04 49_[+1(4.74e-05)]_7_[+3(2.66e-05)]_\ 48 chr2L:16707020-16707140 1.29e-03 72_[+3(1.21e-05)]_40 chrX:17742068-17742188 3.94e-02 61_[+3(5.84e-05)]_51 chr3R:7076439-7076559 8.90e-05 58_[+2(1.16e-05)]_54 chrX:17832244-17832364 3.35e-04 60_[+2(1.16e-05)]_52 chr2L:17541525-17541645 1.42e-02 57_[+1(6.24e-05)]_55 chr3L:15853491-15853611 5.01e-03 55_[+1(6.24e-05)]_57 chr3L:2882495-2882615 3.32e-03 56_[+2(1.16e-05)]_30_[+2(1.16e-05)]_\ 18 chrX:3475188-3475308 3.82e-04 49_[+1(1.18e-05)]_20_[+1(1.18e-05)]_\ 35 chrX:5690752-5690872 5.34e-06 36_[+1(1.18e-05)]_76 chr2L:20097892-20098012 7.37e-02 60_[+3(4.66e-05)]_52 chr3L:22276150-22276270 1.41e-05 34_[+2(1.16e-05)]_5_[+1(1.18e-05)]_\ 65 chrX:7735324-7735444 4.15e-03 55_[+2(1.16e-05)]_57 chrX:10234059-10234179 4.77e-05 15_[+2(4.11e-05)]_57_[+1(1.18e-05)]_\ 32 chr3R:15580562-15580682 6.00e-05 60_[+1(1.18e-05)]_42_[+5(4.25e-05)]_\ 2 chr3R:16893463-16893583 4.19e-04 37_[+2(1.16e-05)]_6_[+2(1.16e-05)]_\ 61 chr3L:10906415-10906535 5.54e-05 60_[+1(1.18e-05)]_21_[+1(9.25e-05)]_\ 23 chr3L:1488617-1488737 6.59e-03 43_[+2(4.11e-05)]_69 chrX:16595648-16595768 7.20e-04 29_[+3(4.66e-05)]_18_[+2(1.16e-05)]_\ 57 chrX:1209638-1209758 4.50e-04 75_[+2(1.16e-05)]_37 chr2L:8291956-8292076 2.64e-01 120 chr3R:21471088-21471208 1.85e-02 40_[+2(1.16e-05)]_72 chr3R:20561024-20561144 2.00e-05 28_[+4(3.70e-05)]_37_[+3(1.21e-05)]_\ 39 chr2L:12346276-12346396 2.96e-03 54_[+2(1.16e-05)]_28_[+2(2.63e-05)]_\ 22 chr3R:18371514-18371634 1.87e-05 47_[+1(4.74e-05)]_22_[+4(1.29e-05)]_\ 2_[+4(1.29e-05)]_25 chr2R:21534892-21535012 4.29e-05 71_[+1(1.18e-05)]_41 chr3R:9480723-9480843 2.23e-04 27_[+1(1.18e-05)]_14_[+1(1.18e-05)]_\ 63 chr2R:16921491-16921611 7.77e-08 57_[+1(1.18e-05)]_41_[+5(1.77e-05)]_\ 6 chrX:18246959-18247079 2.37e-04 25_[+3(3.64e-05)]_67_[+2(1.16e-05)]_\ 12 chrX:18137615-18137735 4.16e-06 31_[+4(1.29e-05)]_12_[+1(1.18e-05)]_\ 61 chrX:15553558-15553678 1.05e-01 120 chr3L:14122167-14122287 1.27e-04 5_[+2(4.11e-05)]_27_[+4(6.35e-05)]_\ 40_[+1(3.55e-05)]_24 chr2R:15912969-15913089 4.17e-03 94_[+2(1.16e-05)]_18 chr3R:10638760-10638880 1.11e-01 120 chr3R:18104450-18104570 5.71e-04 75_[+3(9.98e-05)]_37 chrX:13303901-13304021 1.57e-02 32_[+2(2.63e-05)]_80 chr3R:15600250-15600370 1.49e-03 54_[+1(1.18e-05)]_58 chr2R:8659036-8659156 1.96e-04 12_[+1(1.18e-05)]_100 chr3L:17563284-17563404 8.00e-02 69_[+2(2.63e-05)]_30_[+2(6.44e-05)]_\ 5 chrX:18207740-18207860 8.44e-05 28_[+2(1.16e-05)]_63_[+3(7.05e-05)]_\ 13 chrX:277971-278091 6.19e-03 36_[+2(5.02e-05)]_76 chr2R:6156281-6156401 1.30e-02 68_[+1(3.55e-05)]_44 chr3L:16896587-16896707 1.85e-04 90_[+1(1.18e-05)]_22 chrX:8674797-8674917 1.13e-03 52_[+2(8.31e-05)]_6_[+2(8.31e-05)]_\ 7_[+2(4.11e-05)]_31 chr3L:16016883-16017003 4.14e-04 40_[+1(1.18e-05)]_3_[+3(2.66e-05)]_\ 18_[+1(1.18e-05)]_35 chr3R:26036200-26036320 2.39e-04 60_[+2(1.16e-05)]_52 chr3L:11369710-11369830 2.63e-03 65_[+1(3.55e-05)]_47 chr3R:10624314-10624434 4.79e-03 10_[+3(1.21e-05)]_17_[+3(1.21e-05)]_\ 77 chr3R:8712130-8712250 1.97e-03 59_[+2(6.44e-05)]_6_[+2(1.16e-05)]_\ 39 chrX:15803001-15803121 8.13e-04 72_[+3(1.21e-05)]_40 chrX:15709826-15709946 3.51e-04 55_[+2(4.11e-05)]_11_[+2(4.11e-05)]_\ 38 chrX:12575406-12575526 1.03e-04 59_[+1(1.18e-05)]_53 chr2R:14009798-14009918 8.47e-01 120 chr3L:7529769-7529889 7.00e-05 34_[+1(1.18e-05)]_78 chrX:19751806-19751926 2.46e-07 5_[+2(6.44e-05)]_45_[+5(6.01e-05)]_\ 1_[+1(1.18e-05)]_45 chr3L:3352618-3352738 1.49e-02 68_[+2(1.16e-05)]_44 chrX:17790579-17790699 3.11e-05 11_[+5(3.48e-05)]_39_[+2(4.11e-05)]_\ 30_[+2(4.11e-05)]_16 chr2L:21329670-21329790 1.44e-04 120 chr2R:14903826-14903946 3.92e-03 74_[+3(1.21e-05)]_38 chr2L:13511307-13511427 3.16e-01 120 chr2R:7249906-7250026 6.83e-05 53_[+1(1.18e-05)]_59 chr2L:2901202-2901322 1.95e-02 32_[+3(2.66e-05)]_80 chr2L:6250060-6250180 1.13e-01 120 chr2R:21897811-21897931 3.08e-04 10_[+1(6.24e-05)]_53_[+2(1.16e-05)]_\ 41 chr3R:16878605-16878725 2.46e-05 63_[+3(2.66e-05)]_[+2(1.16e-05)]_41 chr3R:30919802-30919922 4.78e-03 75_[+2(2.63e-05)]_37 chr2L:2364335-2364455 1.52e-04 34_[+2(1.16e-05)]_78 chrX:15803845-15803965 4.62e-03 32_[+1(1.18e-05)]_80 chrX:8884133-8884253 1.44e-03 59_[+2(1.16e-05)]_14_[+2(1.16e-05)]_\ 31 chr3L:11217941-11218061 9.28e-06 13_[+4(1.29e-05)]_10_[+4(9.05e-05)]_\ 11_[+1(1.18e-05)]_62 chr3R:4607705-4607825 2.30e-03 56_[+2(1.16e-05)]_56 chr3L:14300996-14301116 6.88e-03 39_[+1(1.18e-05)]_73 chrX:9601509-9601629 5.11e-08 17_[+4(6.35e-05)]_4_[+1(1.18e-05)]_\ 8_[+4(3.70e-05)]_67 chr3R:29706910-29707030 1.30e-02 5_[+1(1.18e-05)]_107 chr2L:21330875-21330995 4.78e-02 120 chrX:18533501-18533621 6.66e-04 87_[+2(1.16e-05)]_25 chr3L:13135066-13135186 1.82e-04 72_[+2(1.16e-05)]_40 chr3L:17657089-17657209 1.02e-04 64_[+5(3.48e-05)]_3_[+4(6.35e-05)]_\ 37 chr3R:22368464-22368584 1.81e-03 58_[+1(1.18e-05)]_27_[+3(1.21e-05)]_\ 19 chrX:6756164-6756284 2.24e-01 120 chr3L:804655-804775 4.51e-04 19_[+3(1.21e-05)]_93 chr2L:11470161-11470281 9.98e-06 73_[+2(1.16e-05)]_11_[+5(9.61e-06)]_\ 20 chr3L:739573-739693 1.45e-05 31_[+5(3.48e-05)]_29_[+1(1.18e-05)]_\ 44 chrX:13397777-13397897 2.26e-01 120 chr3R:30074884-30075004 6.99e-04 44_[+3(1.21e-05)]_68 chr2L:3845826-3845946 2.17e-02 50_[+3(9.98e-05)]_62 chr2R:18135293-18135413 7.10e-01 120 chr2L:14465110-14465230 1.52e-03 49_[+3(9.98e-05)]_16_[+1(4.74e-05)]_\ 39 chr2R:22533057-22533177 1.76e-04 31_[+2(1.16e-05)]_81 chr3L:8175960-8176080 3.79e-03 67_[+3(1.21e-05)]_45 chr2L:19802290-19802410 9.69e-03 53_[+3(2.66e-05)]_59 chr3R:27205416-27205536 4.76e-04 53_[+3(2.66e-05)]_22_[+1(1.18e-05)]_\ 29 chrX:9615676-9615796 4.86e-01 120 chrX:11155086-11155206 8.74e-06 27_[+5(9.61e-06)]_25_[+3(1.21e-05)]_\ 52 chr3R:14744511-14744631 3.95e-01 120 chr3L:1549299-1549419 7.35e-04 63_[+1(1.18e-05)]_49 chrX:17111492-17111612 1.98e-03 63_[+2(1.16e-05)]_49 chr2R:18872148-18872268 6.13e-05 63_[+3(5.84e-05)]_49 chrX:9029934-9030054 1.04e-04 48_[+2(1.16e-05)]_1_[+2(1.16e-05)]_\ 55 chr2L:17249538-17249658 1.31e-04 21_[+4(1.29e-05)]_22_[+3(1.21e-05)]_\ 15_[+4(7.47e-05)]_38 chr2R:21846978-21847098 7.43e-06 45_[+4(5.28e-05)]_20_[+1(1.18e-05)]_\ 39 chr2L:8619773-8619893 1.40e-03 78_[+2(1.16e-05)]_34 chr3R:10588735-10588855 8.83e-03 48_[+2(1.16e-05)]_24_[+2(5.02e-05)]_\ [+2(1.16e-05)]_24 chr2R:21706753-21706873 5.68e-03 47_[+2(5.02e-05)]_65 chr3R:4897282-4897402 4.45e-05 34_[+3(2.66e-05)]_10_[+3(1.21e-05)]_\ 19_[+1(1.18e-05)]_33 chrX:15552777-15552897 1.46e-02 120 chrX:10320567-10320687 3.71e-01 120 chr3L:13925449-13925569 2.50e-02 7_[+5(1.77e-05)]_105 chr3L:1367144-1367264 8.09e-04 76_[+2(1.16e-05)]_36 chr2L:19013283-19013403 6.42e-04 39_[+3(1.21e-05)]_73 chr3L:8547879-8547999 3.73e-02 39_[+2(4.11e-05)]_73 chr2R:10568455-10568575 2.53e-03 71_[+2(1.16e-05)]_41 chr2L:8546742-8546862 9.31e-01 120 chr2L:6948804-6948924 1.08e-02 82_[+1(6.24e-05)]_30 chr2R:19617850-19617970 2.69e-04 82_[+1(1.18e-05)]_30 chr2L:8084931-8085051 4.24e-04 61_[+1(1.18e-05)]_51 chr2L:3083717-3083837 7.31e-04 25_[+1(1.18e-05)]_23_[+1(1.18e-05)]_\ 56 chr3R:19463288-19463408 5.59e-04 32_[+2(1.16e-05)]_80 chr3L:12093806-12093926 2.96e-04 34_[+2(1.16e-05)]_10_[+1(4.74e-05)]_\ 60 chr2L:18335803-18335923 2.90e-01 120 chrX:3465602-3465722 2.10e-02 120 chr2L:6201646-6201766 8.22e-01 120 chr3L:4107271-4107391 2.12e-04 17_[+4(7.47e-05)]_30_[+3(1.21e-05)]_\ 57 chr2L:5610225-5610345 2.36e-02 77_[+4(3.70e-05)]_35 chrX:7157253-7157373 1.00e+00 120 chr4:835392-835512 1.04e-01 61_[+2(2.63e-05)]_51 chr2L:11432397-11432517 1.20e-03 47_[+2(1.16e-05)]_65 chr3R:18992432-18992552 2.33e-02 120 chrX:21306308-21306428 2.30e-04 57_[+2(1.16e-05)]_55 chr2L:6795310-6795430 3.74e-03 24_[+4(3.70e-05)]_88 chr2L:7544434-7544554 4.96e-04 73_[+1(1.18e-05)]_39 chrX:16912930-16913050 2.06e-03 72_[+2(1.16e-05)]_40 chr2R:6870276-6870396 1.49e-04 35_[+1(1.18e-05)]_77 chr2L:3855584-3855704 5.72e-03 23_[+3(1.21e-05)]_89 chr3R:8956507-8956627 7.08e-05 1_[+4(1.29e-05)]_48_[+3(2.66e-05)]_\ 55 chr2R:6157999-6158119 2.32e-03 62_[+2(4.11e-05)]_50 chr3L:22743224-22743344 3.49e-03 75_[+2(4.11e-05)]_37 chr3L:7953261-7953381 4.09e-05 38_[+2(1.16e-05)]_74 chrX:14488067-14488187 1.30e-04 26_[+2(1.16e-05)]_86 chr3R:5208093-5208213 2.22e-01 120 chr3R:19801907-19802027 8.47e-01 120 chr2L:20230040-20230160 4.66e-01 120 chr3L:11173230-11173350 7.02e-02 86_[+2(1.16e-05)]_26 chr3R:16907962-16908082 9.83e-01 120 chr2L:13203260-13203380 1.28e-03 16_[+3(3.64e-05)]_69_[+3(1.21e-05)]_\ 19 chr3L:483983-484103 4.33e-01 120 chr3L:1920846-1920966 4.06e-05 27_[+2(1.16e-05)]_85 chr3L:16429590-16429710 3.07e-01 120 chr3L:789731-789851 9.91e-01 120 chr2L:14698169-14698289 3.57e-02 80_[+2(1.16e-05)]_32 chrX:17742668-17742788 2.30e-03 48_[+2(1.16e-05)]_64 chr3R:5031965-5032085 1.05e-01 120 chr2R:10212508-10212628 9.53e-01 120 chr3R:14511262-14511382 4.31e-02 [+2(1.16e-05)]_112 chr2R:22142114-22142234 1.71e-05 36_[+5(8.92e-05)]_21_[+1(1.18e-05)]_\ 47 chrX:6545934-6546054 3.86e-04 40_[+2(1.16e-05)]_72 chr3R:19467588-19467708 2.95e-01 120 chrX:3058034-3058154 3.35e-01 120 chr3R:13320002-13320122 6.77e-01 120 chr3L:15234587-15234707 4.92e-04 73_[+1(1.18e-05)]_39 chr3R:23672221-23672341 7.86e-01 120 chr3R:28831472-28831592 1.48e-04 51_[+2(1.16e-05)]_61 chrX:8178368-8178488 1.29e-03 84_[+2(1.16e-05)]_28 chr2R:17851597-17851717 1.83e-02 30_[+3(2.66e-05)]_82 chr2L:5567156-5567276 2.09e-04 33_[+4(3.70e-05)]_15_[+3(2.66e-05)]_\ 56 chrX:13141353-13141473 3.20e-02 52_[+3(5.84e-05)]_60 chr3R:23048445-23048565 2.34e-04 30_[+1(1.18e-05)]_82 chrX:15465329-15465449 2.69e-01 120 chr3L:11414489-11414609 4.76e-01 120 chrX:18839377-18839497 7.64e-01 120 chr2L:20464477-20464597 3.54e-02 5_[+4(9.05e-05)]_107 chr3L:3870407-3870527 1.75e-03 42_[+2(4.11e-05)]_70 chr2R:17261866-17261986 7.98e-01 120 chr3R:21589921-21590041 1.29e-01 120 chr3R:18906175-18906295 4.87e-03 56_[+3(1.21e-05)]_56 chr2R:24305671-24305791 6.82e-04 37_[+2(1.16e-05)]_3_[+1(3.55e-05)]_\ 64 chr2L:9496601-9496721 6.04e-04 76_[+1(1.18e-05)]_36 chrX:6035438-6035558 7.85e-01 120 chr3R:19903450-19903570 4.10e-04 63_[+1(1.18e-05)]_49 chr3R:10266863-10266983 7.31e-04 74_[+2(1.16e-05)]_38 chr2L:1913132-1913252 7.84e-02 31_[+5(4.25e-05)]_81 chr3L:808709-808829 2.65e-02 120 chrX:5690959-5691079 8.81e-04 120 chr2R:24323432-24323552 9.26e-01 120 chr3R:17708951-17709071 4.62e-06 3_[+5(9.61e-06)]_74_[+2(1.16e-05)]_\ 27 chr3L:4357868-4357988 5.99e-03 11_[+1(3.55e-05)]_101 chr2L:18981643-18981763 1.30e-01 68_[+4(9.05e-05)]_44 chr2L:20852195-20852315 7.29e-01 120 chr3R:5599698-5599818 3.94e-05 33_[+4(1.29e-05)]_4_[+2(1.16e-05)]_\ 67 chr3R:5114133-5114253 1.06e-03 48_[+2(2.63e-05)]_4_[+4(5.28e-05)]_\ 52 chr3L:15507492-15507612 2.58e-01 24_[+5(9.56e-05)]_88 chr2L:8545757-8545877 4.67e-04 39_[+1(1.18e-05)]_57_[+3(1.21e-05)]_\ 8 chr2L:19433313-19433433 5.62e-03 45_[+1(1.18e-05)]_67 chr2R:15913688-15913808 3.83e-01 120 chr3R:24298612-24298732 1.90e-04 10_[+2(8.31e-05)]_26_[+3(3.64e-05)]_\ 68 chr2L:12679476-12679596 2.78e-05 22_[+5(9.61e-06)]_13_[+2(1.16e-05)]_\ 69 chr3L:11365784-11365904 2.60e-04 58_[+3(1.21e-05)]_15_[+1(1.18e-05)]_\ 31 chr3L:11292507-11292627 6.41e-07 14_[+4(1.29e-05)]_61_[+1(1.18e-05)]_\ 29 chrX:2024929-2025049 2.08e-01 120 chr3L:11293479-11293599 4.91e-06 35_[+2(1.16e-05)]_67_[+5(2.69e-05)]_\ 2 chr2L:12049278-12049398 2.10e-01 120 chr2L:13548775-13548895 1.19e-06 42_[+1(1.18e-05)]_29_[+5(4.25e-05)]_\ 33 chr3R:7085639-7085759 1.41e-03 43_[+3(1.21e-05)]_69 chr3R:23869015-23869135 1.16e-02 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chrX:19605904-19606024 8.54e-04 22_[+3(1.21e-05)]_90 chr3L:7837252-7837372 3.44e-02 120 chr3R:12644956-12645076 7.19e-02 103_[+4(3.70e-05)]_9 chr3R:21001249-21001369 9.10e-01 120 chr2L:2883637-2883757 7.09e-02 11_[+2(2.63e-05)]_101 chrX:17509743-17509863 7.37e-02 48_[+5(8.92e-05)]_64 chr3R:24301585-24301705 2.30e-01 120 chr2R:15136327-15136447 1.77e-01 120 chr2L:10967310-10967430 8.52e-03 77_[+1(4.74e-05)]_35 chrX:17300508-17300628 6.17e-04 82_[+2(4.11e-05)]_30 chr3L:14029151-14029271 2.93e-01 83_[+1(9.25e-05)]_29 chrX:5086313-5086433 2.77e-01 50_[+2(4.11e-05)]_62 chr2R:23798515-23798635 7.09e-01 120 chr2L:7994717-7994837 9.02e-01 120 chr2R:22403190-22403310 9.75e-02 120 chr2R:22508179-22508299 6.39e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************