******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4617.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:11609276-11609396 1.0000 120 chr2R:1072162-1072282 1.0000 120 chr2R:5980545-5980665 1.0000 120 chr3L:211306-211426 1.0000 120 chr3L:212687-212807 1.0000 120 chr2R:24775093-24775213 1.0000 120 chr3L:19979622-19979742 1.0000 120 chr3R:21359523-21359643 1.0000 120 chr2L:1982216-1982336 1.0000 120 chr2L:6658516-6658636 1.0000 120 chr3R:31617992-31618112 1.0000 120 chrX:3949012-3949132 1.0000 120 chr2R:14152718-14152838 1.0000 120 chr3L:20028877-20028997 1.0000 120 chr2R:21616752-21616872 1.0000 120 chrX:14242677-14242797 1.0000 120 chr2R:21719840-21719960 1.0000 120 chr2R:17019242-17019362 1.0000 120 chr3R:9015222-9015342 1.0000 120 chr4:481804-481924 1.0000 120 chr3R:6456310-6456430 1.0000 120 chr2R:14504127-14504247 1.0000 120 chr3L:8191369-8191489 1.0000 120 chr3L:7654547-7654667 1.0000 120 chrX:2225353-2225473 1.0000 120 chr3L:6756344-6756464 1.0000 120 chrX:15940229-15940349 1.0000 120 chr3R:22727094-22727214 1.0000 120 chr3R:9748241-9748361 1.0000 120 chr2L:16732618-16732738 1.0000 120 chr3R:27681876-27681996 1.0000 120 chr2L:3452473-3452593 1.0000 120 chr2L:13203103-13203223 1.0000 120 chr3R:12691792-12691912 1.0000 120 chr3R:27582938-27583058 1.0000 120 chr2L:10206814-10206934 1.0000 120 chr2R:15939739-15939859 1.0000 120 chr2R:21292113-21292233 1.0000 120 chr2R:5652581-5652701 1.0000 120 chr2L:12097884-12098004 1.0000 120 chr3R:29816371-29816491 1.0000 120 chr3R:21126820-21126940 1.0000 120 chr2L:16288479-16288599 1.0000 120 chr3R:15320809-15320929 1.0000 120 chrX:14226233-14226353 1.0000 120 chr2R:10897716-10897836 1.0000 120 chr3L:5561447-5561567 1.0000 120 chr3R:5821309-5821429 1.0000 120 chr3L:23150391-23150511 1.0000 120 chr3L:22071721-22071841 1.0000 120 chr2R:6042691-6042811 1.0000 120 chr3R:24357816-24357936 1.0000 120 chr2R:21384146-21384266 1.0000 120 chr3R:17795130-17795250 1.0000 120 chr3R:22365801-22365921 1.0000 120 chr2R:12613129-12613249 1.0000 120 chr2L:21758134-21758254 1.0000 120 chr3R:7186363-7186483 1.0000 120 chr2R:24029367-24029487 1.0000 120 chr3L:11793541-11793661 1.0000 120 chr2R:17593067-17593187 1.0000 120 chr2R:16001068-16001188 1.0000 120 chr3R:26967102-26967222 1.0000 120 chrX:7104451-7104571 1.0000 120 chr3R:18199387-18199507 1.0000 120 chrX:647375-647495 1.0000 120 chr3L:21574634-21574754 1.0000 120 chr3R:12413716-12413836 1.0000 120 chr3L:13502875-13502995 1.0000 120 chr3R:10767558-10767678 1.0000 120 chr2L:6000241-6000361 1.0000 120 chr2L:6945209-6945329 1.0000 120 chr3R:23126329-23126449 1.0000 120 chrX:22540267-22540387 1.0000 120 chr2R:15955024-15955144 1.0000 120 chr3R:30806260-30806380 1.0000 120 chr2L:13000433-13000553 1.0000 120 chr3R:4232143-4232263 1.0000 120 chr2L:10976994-10977114 1.0000 120 chr2R:23949413-23949533 1.0000 120 chrX:11616242-11616362 1.0000 120 chr3L:8623794-8623914 1.0000 120 chr2R:5662973-5663093 1.0000 120 chr3L:13965326-13965446 1.0000 120 chr3L:1941251-1941371 1.0000 120 chr2R:21624347-21624467 1.0000 120 chr3R:17085620-17085740 1.0000 120 chr3R:14741761-14741881 1.0000 120 chrX:13090183-13090303 1.0000 120 chr3R:29749395-29749515 1.0000 120 chr2R:14993733-14993853 1.0000 120 chr2L:869796-869916 1.0000 120 chr2R:7917116-7917236 1.0000 120 chr3R:31580397-31580517 1.0000 120 chrX:927425-927545 1.0000 120 chr3R:20635620-20635740 1.0000 120 chr2L:8123806-8123926 1.0000 120 chr3R:20585660-20585780 1.0000 120 chr2L:11989921-11990041 1.0000 120 chr3R:11749277-11749397 1.0000 120 chr2L:22538393-22538513 1.0000 120 chr2R:9882170-9882290 1.0000 120 chr2R:7516205-7516325 1.0000 120 chr2R:4788439-4788559 1.0000 120 chr2L:4385902-4386022 1.0000 120 chr2R:19503019-19503139 1.0000 120 chrX:2344498-2344618 1.0000 120 chr2L:20734977-20735097 1.0000 120 chr2L:4452878-4452998 1.0000 120 chr2R:22186004-22186124 1.0000 120 chr3R:22741064-22741184 1.0000 120 chr2R:18135444-18135564 1.0000 120 chr3R:3734983-3735103 1.0000 120 chr3L:15816244-15816364 1.0000 120 chr3L:11074194-11074314 1.0000 120 chr2R:11982739-11982859 1.0000 120 chr3R:27274981-27275101 1.0000 120 chr2R:5307449-5307569 1.0000 120 chr2L:18612098-18612218 1.0000 120 chr3L:21831991-21832111 1.0000 120 chr2R:21635084-21635204 1.0000 120 chr3L:9487653-9487773 1.0000 120 chr2L:18158611-18158731 1.0000 120 chrX:18843790-18843910 1.0000 120 chr3L:7935959-7936079 1.0000 120 chr3L:12145841-12145961 1.0000 120 chr3L:17529648-17529768 1.0000 120 chrX:9247278-9247398 1.0000 120 chr3R:21520980-21521100 1.0000 120 chr2L:22129741-22129861 1.0000 120 chr2L:15271797-15271917 1.0000 120 chr2L:22250070-22250190 1.0000 120 chr2R:12507206-12507326 1.0000 120 chr2L:2993151-2993271 1.0000 120 chr2R:9989310-9989430 1.0000 120 chrX:8461564-8461684 1.0000 120 chr3L:20436175-20436295 1.0000 120 chr3L:16863118-16863238 1.0000 120 chr3R:20622114-20622234 1.0000 120 chr2R:8599769-8599889 1.0000 120 chr3R:26718006-26718126 1.0000 120 chr2L:294498-294618 1.0000 120 chr2L:6724025-6724145 1.0000 120 chr2L:22579098-22579218 1.0000 120 chr2R:24063336-24063456 1.0000 120 chr2L:18948849-18948969 1.0000 120 chr2L:1704974-1705094 1.0000 120 chr2R:18631795-18631915 1.0000 120 chr3L:21493093-21493213 1.0000 120 chrX:4919018-4919138 1.0000 120 chr3L:4254018-4254138 1.0000 120 chr2R:9400163-9400283 1.0000 120 chrX:13830091-13830211 1.0000 120 chr4:466552-466672 1.0000 120 chr2R:23396550-23396670 1.0000 120 chr2R:15531985-15532105 1.0000 120 chrX:9142537-9142657 1.0000 120 chr3R:15222966-15223086 1.0000 120 chrX:13616198-13616318 1.0000 120 chr2R:8925648-8925768 1.0000 120 chr3R:25065509-25065629 1.0000 120 chr2L:10239385-10239505 1.0000 120 chr3R:8726776-8726896 1.0000 120 chr2R:23851561-23851681 1.0000 120 chrX:11347885-11348005 1.0000 120 chr2R:17737139-17737259 1.0000 120 chr3R:13271921-13272041 1.0000 120 chr2R:13198917-13199037 1.0000 120 chr3L:12749977-12750097 1.0000 120 chr2L:6036781-6036901 1.0000 120 chr3R:15363738-15363858 1.0000 120 chr2R:12179713-12179833 1.0000 120 chr4:571951-572071 1.0000 120 chr3L:16348087-16348207 1.0000 120 chrX:18650338-18650458 1.0000 120 chr3L:21626372-21626492 1.0000 120 chr3R:17805179-17805299 1.0000 120 chrX:4551841-4551961 1.0000 120 chr2L:5094101-5094221 1.0000 120 chr3R:24851596-24851716 1.0000 120 chr3L:1569272-1569392 1.0000 120 chr2L:23068241-23068361 1.0000 120 chr2R:18446497-18446617 1.0000 120 chr3L:12805991-12806111 1.0000 120 chr3R:16098515-16098635 1.0000 120 chr4:210439-210559 1.0000 120 chr3R:15834743-15834863 1.0000 120 chr3R:15278313-15278433 1.0000 120 chrX:10848692-10848812 1.0000 120 chr3L:15583644-15583764 1.0000 120 chr3R:19229451-19229571 1.0000 120 chr3R:25044958-25045078 1.0000 120 chr2R:23953963-23954083 1.0000 120 chr3R:11437724-11437844 1.0000 120 chrX:15746792-15746912 1.0000 120 chr2R:16016924-16017044 1.0000 120 chrX:9256166-9256286 1.0000 120 chr3R:4233112-4233232 1.0000 120 chr2R:22882555-22882675 1.0000 120 chr3R:15361699-15361819 1.0000 120 chr3R:18252674-18252794 1.0000 120 chrX:12592027-12592147 1.0000 120 chr2L:11120129-11120249 1.0000 120 chr4:1123118-1123238 1.0000 120 chr3R:5226253-5226373 1.0000 120 chr3R:25122722-25122842 1.0000 120 chr2R:22415915-22416035 1.0000 120 chr2L:4967680-4967800 1.0000 120 chr2R:17001886-17002006 1.0000 120 chr3R:25661132-25661252 1.0000 120 chr2R:23544014-23544134 1.0000 120 chr3L:8514745-8514865 1.0000 120 chr3R:20576983-20577103 1.0000 120 chr3L:7339506-7339626 1.0000 120 chr2L:18448714-18448834 1.0000 120 chr2L:4949566-4949686 1.0000 120 chr3L:11795585-11795705 1.0000 120 chrX:13296463-13296583 1.0000 120 chr2R:14235309-14235429 1.0000 120 chrX:6301146-6301266 1.0000 120 chr3L:3159363-3159483 1.0000 120 chr3R:30036725-30036845 1.0000 120 chr2L:6424430-6424550 1.0000 120 chr2R:24098422-24098542 1.0000 120 chr3L:652637-652757 1.0000 120 chr3R:13676806-13676926 1.0000 120 chr2L:6338209-6338329 1.0000 120 chr3R:24319084-24319204 1.0000 120 chr3R:20027986-20028106 1.0000 120 chr3R:16273227-16273347 1.0000 120 chr2L:19034760-19034880 1.0000 120 chrX:476365-476485 1.0000 120 chrX:2727715-2727835 1.0000 120 chr3L:23714943-23715063 1.0000 120 chr2R:24099243-24099363 1.0000 120 chrX:1665057-1665177 1.0000 120 chr3R:12429207-12429327 1.0000 120 chr2R:15939940-15940060 1.0000 120 chr2R:14617958-14618078 1.0000 120 chr2R:16027933-16028053 1.0000 120 chr3R:25983123-25983243 1.0000 120 chr3R:11949732-11949852 1.0000 120 chr2L:13021169-13021289 1.0000 120 chr2R:21482005-21482125 1.0000 120 chr2L:815917-816037 1.0000 120 chr3L:835590-835710 1.0000 120 chr2R:1344902-1345022 1.0000 120 chrX:6683928-6684048 1.0000 120 chr2R:20286953-20287073 1.0000 120 chr2R:7510090-7510210 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG4617/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4617.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.277 C 0.221 G 0.221 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.277 C 0.221 G 0.221 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-1 width = 8 sites = 22 llr = 225 E-value = 1.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::a:: pos.-specific C ::::::a9 probability G 9:a:a::1 matrix T :a:a:::: bits 2.2 * * 2.0 * * * 1.7 * *** ** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16027933-16028053 91 1.15e-05 TGGCTAGTCA GTGTGACC AGTTGAGAGT chr3R:12429207-12429327 70 1.15e-05 TAGGTAAACA GTGTGACC GAAGCTGGAC chr3R:30036725-30036845 110 1.15e-05 TTTCGGGGCA GTGTGACC GTG chr2R:17001886-17002006 50 1.15e-05 CGAATTGTTA GTGTGACC GTCATGCGGC chr2L:4967680-4967800 95 1.15e-05 CAAAAGAGCA GTGTGACC GTGGCCTAGT chr2R:23953963-23954083 49 1.15e-05 CCGCTACCAA GTGTGACC GCAGCAGTGG chrX:4551841-4551961 46 1.15e-05 ACTCGCCGTC GTGTGACC AGACCCAAGC chr3L:12749977-12750097 83 1.15e-05 ATAAAACTGA GTGTGACC GTAGCCGGGG chr3R:13271921-13272041 84 1.15e-05 CAGTGCACCA GTGTGACC GTTGAGTCCC chr2R:18631795-18631915 84 1.15e-05 CAGCTAGCCA GTGTGACC AAGTTGCAGT chr2L:18158611-18158731 41 1.15e-05 CAACTTTTCT GTGTGACC ATCGCAAATA chr3R:22741064-22741184 55 1.15e-05 CAGAATGCCA GTGTGACC AGGGTTCGGA chr2L:869796-869916 67 1.15e-05 CGGTAAATGC GTGTGACC ATATCAGGGA chrX:7104451-7104571 27 1.15e-05 CAGCTGTTTG GTGTGACC AGAGCTTTAA chr2R:21616752-21616872 113 1.15e-05 ATTTAGTGTG GTGTGACC chr2R:23544014-23544134 87 2.31e-05 CGCTGACCAT GTGTGACG TTGCAACAGT chr3L:23150391-23150511 70 2.31e-05 AGTGGAACAT GTGTGACG TTACGGGTTG chrX:13616198-13616318 34 3.75e-05 CTCTCTATCG ATGTGACC CCGCGCCAGG chr3R:23126329-23126449 75 3.75e-05 ATCGCAAGCA ATGTGACC GCAGACAGGT chrX:10848692-10848812 29 5.58e-05 TATTTACGCA GTGTGGCC GAACTCGGTA chrX:18650338-18650458 105 5.58e-05 CTTCTGTTCA GCGTGACC AGAGTGCT chr3L:652637-652757 41 6.73e-05 GCGACTGTGC GTGTGAGC CAGGTTTAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16027933-16028053 1.2e-05 90_[+1]_22 chr3R:12429207-12429327 1.2e-05 69_[+1]_43 chr3R:30036725-30036845 1.2e-05 109_[+1]_3 chr2R:17001886-17002006 1.2e-05 49_[+1]_63 chr2L:4967680-4967800 1.2e-05 94_[+1]_18 chr2R:23953963-23954083 1.2e-05 48_[+1]_64 chrX:4551841-4551961 1.2e-05 45_[+1]_67 chr3L:12749977-12750097 1.2e-05 82_[+1]_30 chr3R:13271921-13272041 1.2e-05 83_[+1]_29 chr2R:18631795-18631915 1.2e-05 83_[+1]_29 chr2L:18158611-18158731 1.2e-05 40_[+1]_72 chr3R:22741064-22741184 1.2e-05 54_[+1]_58 chr2L:869796-869916 1.2e-05 66_[+1]_46 chrX:7104451-7104571 1.2e-05 26_[+1]_86 chr2R:21616752-21616872 1.2e-05 112_[+1] chr2R:23544014-23544134 2.3e-05 86_[+1]_26 chr3L:23150391-23150511 2.3e-05 69_[+1]_43 chrX:13616198-13616318 3.8e-05 33_[+1]_79 chr3R:23126329-23126449 3.8e-05 74_[+1]_38 chrX:10848692-10848812 5.6e-05 28_[+1]_84 chrX:18650338-18650458 5.6e-05 104_[+1]_8 chr3L:652637-652757 6.7e-05 40_[+1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=22 chr2R:16027933-16028053 ( 91) GTGTGACC 1 chr3R:12429207-12429327 ( 70) GTGTGACC 1 chr3R:30036725-30036845 ( 110) GTGTGACC 1 chr2R:17001886-17002006 ( 50) GTGTGACC 1 chr2L:4967680-4967800 ( 95) GTGTGACC 1 chr2R:23953963-23954083 ( 49) GTGTGACC 1 chrX:4551841-4551961 ( 46) GTGTGACC 1 chr3L:12749977-12750097 ( 83) GTGTGACC 1 chr3R:13271921-13272041 ( 84) GTGTGACC 1 chr2R:18631795-18631915 ( 84) GTGTGACC 1 chr2L:18158611-18158731 ( 41) GTGTGACC 1 chr3R:22741064-22741184 ( 55) GTGTGACC 1 chr2L:869796-869916 ( 67) GTGTGACC 1 chrX:7104451-7104571 ( 27) GTGTGACC 1 chr2R:21616752-21616872 ( 113) GTGTGACC 1 chr2R:23544014-23544134 ( 87) GTGTGACG 1 chr3L:23150391-23150511 ( 70) GTGTGACG 1 chrX:13616198-13616318 ( 34) ATGTGACC 1 chr3R:23126329-23126449 ( 75) ATGTGACC 1 chrX:10848692-10848812 ( 29) GTGTGGCC 1 chrX:18650338-18650458 ( 105) GCGTGACC 1 chr3L:652637-652757 ( 41) GTGTGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 1.9e-007 -161 -1110 204 -1110 -1110 -228 -1110 177 -1110 -1110 218 -1110 -1110 -1110 -1110 183 -1110 -1110 218 -1110 178 -1110 -228 -1110 -1110 211 -228 -1110 -1110 204 -128 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.9e-007 0.090909 0.000000 0.909091 0.000000 0.000000 0.045455 0.000000 0.954545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.954545 0.000000 0.045455 0.000000 0.000000 0.954545 0.045455 0.000000 0.000000 0.909091 0.090909 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-1 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 7.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCTGC MEME-2 width = 8 sites = 16 llr = 162 E-value = 6.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::a2:8 probability G a::a::9: matrix T ::a::813 bits 2.2 ** ** 2.0 ** ** 1.7 ***** 1.5 ***** * Relative 1.3 ******** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18448714-18448834 90 9.20e-06 TGGAAGTGTC GCTGCTGC TGGAATTGCT chr3R:17805179-17805299 35 9.20e-06 TTTATTAACA GCTGCTGC TTCATTTTGG chr2R:17737139-17737259 72 9.20e-06 ACTAGCCTCC GCTGCTGC TCCCTCTTAA chr2L:6724025-6724145 25 9.20e-06 AGTTGTTGTT GCTGCTGC TGCCCAGCCG chr3L:17529648-17529768 5 9.20e-06 TCCT GCTGCTGC ACCGCCGTTG chr3L:13965326-13965446 109 9.20e-06 tgttgttgtt gctgctgc agct chr3R:7186363-7186483 99 9.20e-06 agcagcagca gctgctgc TGGCTGGGCC chr2L:4949566-4949686 108 1.64e-05 GAGTGCACAT GCTGCCGC CTCCG chr3L:15583644-15583764 111 1.64e-05 TGAAGACTCT GCTGCCGC AA chr2L:4452878-4452998 55 1.64e-05 GTAATCTTCG GCTGCCGC GCTCGCTTCA chr2L:6000241-6000361 77 2.81e-05 AGCAATGCCA GCTGCTGT GCGCAAGTTC chr2L:16288479-16288599 20 2.81e-05 AAGAAATTTC GCTGCTGT TTTCACCCAA chr2L:10206814-10206934 16 2.81e-05 AGTGCATCCT GCTGCTGT GCATTGGCAC chr3R:31617992-31618112 76 2.81e-05 AGTGCTTGGA GCTGCTGT TACAATAGAT chr3R:15278313-15278433 106 3.98e-05 GGCGTTACCG GCTGCTTC TTGGCGT chr3R:8726776-8726896 62 3.98e-05 AAGCTAGTGC GCTGCTTC GTGGCAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18448714-18448834 9.2e-06 89_[+2]_23 chr3R:17805179-17805299 9.2e-06 34_[+2]_78 chr2R:17737139-17737259 9.2e-06 71_[+2]_41 chr2L:6724025-6724145 9.2e-06 24_[+2]_88 chr3L:17529648-17529768 9.2e-06 4_[+2]_108 chr3L:13965326-13965446 9.2e-06 108_[+2]_4 chr3R:7186363-7186483 9.2e-06 98_[+2]_14 chr2L:4949566-4949686 1.6e-05 107_[+2]_5 chr3L:15583644-15583764 1.6e-05 110_[+2]_2 chr2L:4452878-4452998 1.6e-05 54_[+2]_58 chr2L:6000241-6000361 2.8e-05 76_[+2]_36 chr2L:16288479-16288599 2.8e-05 19_[+2]_93 chr2L:10206814-10206934 2.8e-05 15_[+2]_97 chr3R:31617992-31618112 2.8e-05 75_[+2]_37 chr3R:15278313-15278433 4e-05 105_[+2]_7 chr3R:8726776-8726896 4e-05 61_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCTGC width=8 seqs=16 chr2L:18448714-18448834 ( 90) GCTGCTGC 1 chr3R:17805179-17805299 ( 35) GCTGCTGC 1 chr2R:17737139-17737259 ( 72) GCTGCTGC 1 chr2L:6724025-6724145 ( 25) GCTGCTGC 1 chr3L:17529648-17529768 ( 5) GCTGCTGC 1 chr3L:13965326-13965446 ( 109) GCTGCTGC 1 chr3R:7186363-7186483 ( 99) GCTGCTGC 1 chr2L:4949566-4949686 ( 108) GCTGCCGC 1 chr3L:15583644-15583764 ( 111) GCTGCCGC 1 chr2L:4452878-4452998 ( 55) GCTGCCGC 1 chr2L:6000241-6000361 ( 77) GCTGCTGT 1 chr2L:16288479-16288599 ( 20) GCTGCTGT 1 chr2L:10206814-10206934 ( 16) GCTGCTGT 1 chr3R:31617992-31618112 ( 76) GCTGCTGT 1 chr3R:15278313-15278433 ( 106) GCTGCTTC 1 chr3R:8726776-8726896 ( 62) GCTGCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 6.9e+001 -1064 -1064 218 -1064 -1064 218 -1064 -1064 -1064 -1064 -1064 183 -1064 -1064 218 -1064 -1064 218 -1064 -1064 -1064 -24 -1064 153 -1064 -1064 198 -117 -1064 176 -1064 -17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 6.9e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.187500 0.000000 0.812500 0.000000 0.000000 0.875000 0.125000 0.000000 0.750000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-2 regular expression -------------------------------------------------------------------------------- GCTGCTG[CT] -------------------------------------------------------------------------------- Time 13.49 secs. ******************************************************************************** ******************************************************************************** MOTIF MAACAAAA MEME-3 width = 8 sites = 59 llr = 449 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAACAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6a82989a pos.-specific C 4:17:21: probability G ::1:1::: matrix T :::1:::: bits 2.2 2.0 1.7 * * 1.5 * * ** Relative 1.3 * * ** Entropy 1.1 *** **** (11.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:835590-835710 78 2.77e-05 AAACATATGT AAACAAAA GTGAAATTTT chrX:12592027-12592147 99 2.77e-05 aatgcataat aaacaaaa caacaacaaa chr3R:15361699-15361819 69 2.77e-05 aaaaaaataa aaacaaaa aaaaaaaCAT chrX:4551841-4551961 19 2.77e-05 ATCCAAATGC AAACAAAA AATAAACAAA chr2R:12507206-12507326 101 2.77e-05 AAACAACAAA AAACAAAA TCGGCAACTG chr3R:27274981-27275101 76 2.77e-05 gtgtgGGGAA AAACAAAA CATTTGCGCT chr2R:23949413-23949533 33 2.77e-05 GATTTCTTTT AAACAAAA GATTCGTTCC chr2R:15955024-15955144 87 2.77e-05 ATTTTGGTTA AAACAAAA TGAGGGGCAT chrX:7104451-7104571 9 2.77e-05 AACGAAGC AAACAAAA CAGCTGTTTG chr2R:24029367-24029487 2 2.77e-05 T AAACAAAA AATGGACTTT chr2L:13021169-13021289 113 4.97e-05 TGTAATCTTT CAACAAAA chr3L:16348087-16348207 40 4.97e-05 TTATAACTTG CAACAAAA ATTCAATTAA chr3L:12145841-12145961 33 4.97e-05 TGTGCGAGGG CAACAAAA GATGGGTTAT chrX:2344498-2344618 99 4.97e-05 GGGAAACGCA CAACAAAA ATAAATTATA chr3L:8623794-8623914 93 4.97e-05 GTATAAAACA CAACAAAA CAATGGGCGT chr3L:23150391-23150511 90 4.97e-05 ACGGGTTGGC CAACAAAA TGAAACAGTG chr2L:3452473-3452593 7 4.97e-05 CGAACA CAACAAAA AGAAATAAGT chr2R:14152718-14152838 49 4.97e-05 TTCTATTTCA CAACAAAA CGCCAACGAA chr2L:6424430-6424550 68 7.18e-05 AATTCGCGTG AAACACAA AGGAACCTAA chr2R:23544014-23544134 57 7.18e-05 TTCGCACGCC AAACACAA TAACTTTAAT chr3R:11749277-11749397 37 7.18e-05 TACGTGGGGA AAACACAA GCGCCGCAGT chr3R:18199387-18199507 55 7.18e-05 TTTCGAAAGC AAACACAA CGTTCACATT chr2R:15531985-15532105 61 8.94e-05 TCGAGGGGAG CAACACAA ATGGGGGCCT chr3R:17085620-17085740 64 8.94e-05 CAGTTGGGTC CAACACAA GCCAGTCGAG chr2R:7510090-7510210 82 1.11e-04 CGTCGCGGAA AACCAAAA CACGAACAGC chr4:210439-210559 73 1.11e-04 GTGAAGATTA AACCAAAA ACTATCAATT chr3R:20635620-20635740 8 1.11e-04 GTACACA AACCAAAA CAATGAGCGA chr2L:10976994-10977114 36 1.11e-04 CGCCGTTCAA AACCAAAA TCAAAATCGC chr3R:17795130-17795250 26 1.11e-04 ACGCCCTAGA AACCAAAA CAATCTGGAC chr3L:16863118-16863238 76 1.46e-04 ATTGGGTCAC AAAAAAAA CACTCCCATT chr4:481804-481924 113 1.46e-04 CATAATTTGA AAAAAAAA chr2R:22882555-22882675 79 1.81e-04 ATTCGGCAAA AAATAAAA CATGAATTGG chrX:10848692-10848812 111 1.81e-04 CGTATTGTTA AAATAAAA GA chr3L:12749977-12750097 71 1.81e-04 AAAACTTCTA AAATAAAA CTGAGTGTGA chr2R:8925648-8925768 65 1.81e-04 TTGTATAAAT AAATAAAA GCCAGCCAAA chr3L:21493093-21493213 85 1.81e-04 AACCTTGTCC AAATAAAA TGGAGATGAT chr2L:18158611-18158731 54 1.81e-04 TGACCATCGC AAATAAAA TAACATATGG chr2R:24099243-24099363 44 1.99e-04 ATGCGTTCTT CACCAAAA GTGTAACGCG chr2R:9400163-9400283 5 1.99e-04 TATC CACCAAAA TGCAACGCGG chrX:2225353-2225473 94 2.27e-04 AGCTTTCCCT CAAAAAAA CCAGCGACTC chr2L:10239385-10239505 91 2.77e-04 AGTCAGCCGA AAGCAAAA GAGAGCGAAA chr2R:7917116-7917236 1 2.77e-04 . AAGCAAAA TGAGGGAAAT chr3R:22365801-22365921 92 2.77e-04 AATAACGCCT CAATAAAA TTAAATTTTA chr2L:6658516-6658636 54 2.77e-04 AATCATCTGA CAATAAAA ACCAATTTTC chrX:6683928-6684048 96 2.99e-04 AATCGAATCG AAACGAAA CGTTGAAGTA chr3R:13676806-13676926 6 2.99e-04 CGGTG AAACGAAA GGGGGGAACG chr2R:18631795-18631915 45 2.99e-04 AGTTACTGGG AAACGAAA AATAATTTTA chr2L:22250070-22250190 89 2.99e-04 TTCTGGCGTA AAACGAAA TCAGGCAAAT chr2R:22415915-22416035 52 3.16e-04 ACCGAATCGA CAGCAAAA GCGATCGCCC chr4:1123118-1123238 111 3.16e-04 TTACTTTTGT CAGCAAAA TA chr2L:20734977-20735097 104 3.56e-04 AAAAATAACC AAACAACA ATGTGAGTA chr2L:18612098-18612218 112 4.01e-04 ATTGCAAGTT AAAAACAA T chr3R:24357816-24357936 72 4.01e-04 TTTTTCTAAG AAAAACAA ATCTCTTCGA chr3R:5821309-5821429 58 4.01e-04 GACAACAGAT AAAAACAA TAAACTAATT chr2L:12097884-12098004 21 4.01e-04 GTTTACGCAG AAAAACAA TAATAATTGC chr2L:4967680-4967800 58 4.47e-04 AATATTTTTG CAACAACA TCCACGCAGC chrX:13090183-13090303 37 4.47e-04 GCAGCAACGG CAACAACA ACTTGCGATT chr3L:23714943-23715063 68 4.83e-04 AATATTATTC CAAAACAA CGTAATATAG chr2L:13203103-13203223 19 4.83e-04 ATGCTGTCTA CAAAACAA TGCCCGAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:835590-835710 2.8e-05 77_[+3]_35 chrX:12592027-12592147 2.8e-05 98_[+3]_14 chr3R:15361699-15361819 2.8e-05 68_[+3]_44 chrX:4551841-4551961 2.8e-05 18_[+3]_94 chr2R:12507206-12507326 2.8e-05 100_[+3]_12 chr3R:27274981-27275101 2.8e-05 75_[+3]_37 chr2R:23949413-23949533 2.8e-05 32_[+3]_80 chr2R:15955024-15955144 2.8e-05 86_[+3]_26 chrX:7104451-7104571 2.8e-05 8_[+3]_104 chr2R:24029367-24029487 2.8e-05 1_[+3]_111 chr2L:13021169-13021289 5e-05 112_[+3] chr3L:16348087-16348207 5e-05 39_[+3]_73 chr3L:12145841-12145961 5e-05 32_[+3]_80 chrX:2344498-2344618 5e-05 98_[+3]_14 chr3L:8623794-8623914 5e-05 92_[+3]_20 chr3L:23150391-23150511 5e-05 89_[+3]_23 chr2L:3452473-3452593 5e-05 6_[+3]_106 chr2R:14152718-14152838 5e-05 48_[+3]_64 chr2L:6424430-6424550 7.2e-05 67_[+3]_45 chr2R:23544014-23544134 7.2e-05 56_[+3]_56 chr3R:11749277-11749397 7.2e-05 36_[+3]_76 chr3R:18199387-18199507 7.2e-05 54_[+3]_58 chr2R:15531985-15532105 8.9e-05 60_[+3]_52 chr3R:17085620-17085740 8.9e-05 63_[+3]_49 chr2R:7510090-7510210 0.00011 81_[+3]_31 chr4:210439-210559 0.00011 72_[+3]_40 chr3R:20635620-20635740 0.00011 7_[+3]_105 chr2L:10976994-10977114 0.00011 35_[+3]_77 chr3R:17795130-17795250 0.00011 25_[+3]_87 chr3L:16863118-16863238 0.00015 75_[+3]_37 chr4:481804-481924 0.00015 112_[+3] chr2R:22882555-22882675 0.00018 78_[+3]_34 chrX:10848692-10848812 0.00018 110_[+3]_2 chr3L:12749977-12750097 0.00018 70_[+3]_42 chr2R:8925648-8925768 0.00018 64_[+3]_48 chr3L:21493093-21493213 0.00018 84_[+3]_28 chr2L:18158611-18158731 0.00018 53_[+3]_59 chr2R:24099243-24099363 0.0002 43_[+3]_69 chr2R:9400163-9400283 0.0002 4_[+3]_108 chrX:2225353-2225473 0.00023 93_[+3]_19 chr2L:10239385-10239505 0.00028 90_[+3]_22 chr2R:7917116-7917236 0.00028 [+3]_112 chr3R:22365801-22365921 0.00028 91_[+3]_21 chr2L:6658516-6658636 0.00028 53_[+3]_59 chrX:6683928-6684048 0.0003 95_[+3]_17 chr3R:13676806-13676926 0.0003 5_[+3]_107 chr2R:18631795-18631915 0.0003 44_[+3]_68 chr2L:22250070-22250190 0.0003 88_[+3]_24 chr2R:22415915-22416035 0.00032 51_[+3]_61 chr4:1123118-1123238 0.00032 110_[+3]_2 chr2L:20734977-20735097 0.00036 103_[+3]_9 chr2L:18612098-18612218 0.0004 111_[+3]_1 chr3R:24357816-24357936 0.0004 71_[+3]_41 chr3R:5821309-5821429 0.0004 57_[+3]_55 chr2L:12097884-12098004 0.0004 20_[+3]_92 chr2L:4967680-4967800 0.00045 57_[+3]_55 chrX:13090183-13090303 0.00045 36_[+3]_76 chr3L:23714943-23715063 0.00048 67_[+3]_45 chr2L:13203103-13203223 0.00048 18_[+3]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAACAAAA width=8 seqs=59 chr3L:835590-835710 ( 78) AAACAAAA 1 chrX:12592027-12592147 ( 99) AAACAAAA 1 chr3R:15361699-15361819 ( 69) AAACAAAA 1 chrX:4551841-4551961 ( 19) AAACAAAA 1 chr2R:12507206-12507326 ( 101) AAACAAAA 1 chr3R:27274981-27275101 ( 76) AAACAAAA 1 chr2R:23949413-23949533 ( 33) AAACAAAA 1 chr2R:15955024-15955144 ( 87) AAACAAAA 1 chrX:7104451-7104571 ( 9) AAACAAAA 1 chr2R:24029367-24029487 ( 2) AAACAAAA 1 chr2L:13021169-13021289 ( 113) CAACAAAA 1 chr3L:16348087-16348207 ( 40) CAACAAAA 1 chr3L:12145841-12145961 ( 33) CAACAAAA 1 chrX:2344498-2344618 ( 99) CAACAAAA 1 chr3L:8623794-8623914 ( 93) CAACAAAA 1 chr3L:23150391-23150511 ( 90) CAACAAAA 1 chr2L:3452473-3452593 ( 7) CAACAAAA 1 chr2R:14152718-14152838 ( 49) CAACAAAA 1 chr2L:6424430-6424550 ( 68) AAACACAA 1 chr2R:23544014-23544134 ( 57) AAACACAA 1 chr3R:11749277-11749397 ( 37) AAACACAA 1 chr3R:18199387-18199507 ( 55) AAACACAA 1 chr2R:15531985-15532105 ( 61) CAACACAA 1 chr3R:17085620-17085740 ( 64) CAACACAA 1 chr2R:7510090-7510210 ( 82) AACCAAAA 1 chr4:210439-210559 ( 73) AACCAAAA 1 chr3R:20635620-20635740 ( 8) AACCAAAA 1 chr2L:10976994-10977114 ( 36) AACCAAAA 1 chr3R:17795130-17795250 ( 26) AACCAAAA 1 chr3L:16863118-16863238 ( 76) AAAAAAAA 1 chr4:481804-481924 ( 113) AAAAAAAA 1 chr2R:22882555-22882675 ( 79) AAATAAAA 1 chrX:10848692-10848812 ( 111) AAATAAAA 1 chr3L:12749977-12750097 ( 71) AAATAAAA 1 chr2R:8925648-8925768 ( 65) AAATAAAA 1 chr3L:21493093-21493213 ( 85) AAATAAAA 1 chr2L:18158611-18158731 ( 54) AAATAAAA 1 chr2R:24099243-24099363 ( 44) CACCAAAA 1 chr2R:9400163-9400283 ( 5) CACCAAAA 1 chrX:2225353-2225473 ( 94) CAAAAAAA 1 chr2L:10239385-10239505 ( 91) AAGCAAAA 1 chr2R:7917116-7917236 ( 1) AAGCAAAA 1 chr3R:22365801-22365921 ( 92) CAATAAAA 1 chr2L:6658516-6658636 ( 54) CAATAAAA 1 chrX:6683928-6684048 ( 96) AAACGAAA 1 chr3R:13676806-13676926 ( 6) AAACGAAA 1 chr2R:18631795-18631915 ( 45) AAACGAAA 1 chr2L:22250070-22250190 ( 89) AAACGAAA 1 chr2R:22415915-22416035 ( 52) CAGCAAAA 1 chr4:1123118-1123238 ( 111) CAGCAAAA 1 chr2L:20734977-20735097 ( 104) AAACAACA 1 chr2L:18612098-18612218 ( 112) AAAAACAA 1 chr3R:24357816-24357936 ( 72) AAAAACAA 1 chr3R:5821309-5821429 ( 58) AAAAACAA 1 chr2L:12097884-12098004 ( 21) AAAAACAA 1 chr2L:4967680-4967800 ( 58) CAACAACA 1 chrX:13090183-13090303 ( 37) CAACAACA 1 chr3L:23714943-23715063 ( 68) CAAAACAA 1 chr2L:13203103-13203223 ( 19) CAAAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1641 E= 4.2e+003 122 69 -1253 -1253 185 -1253 -1253 -1253 155 -90 -171 -1253 -86 169 -1253 -105 175 -1253 -171 -1253 152 -12 -1253 -1253 178 -212 -1253 -1253 185 -1253 -1253 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 4.2e+003 0.644068 0.355932 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.813559 0.118644 0.067797 0.000000 0.152542 0.711864 0.000000 0.135593 0.932203 0.000000 0.067797 0.000000 0.796610 0.203390 0.000000 0.000000 0.949153 0.050847 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAACAAAA MEME-3 regular expression -------------------------------------------------------------------------------- [AC]AACA[AC]AA -------------------------------------------------------------------------------- Time 19.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYKTTT MEME-4 width = 8 sites = 48 llr = 384 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYKTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C :::4:::: probability G ::3:4::: matrix T aa754aaa bits 2.2 2.0 1.7 ** *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 *** *** (11.6 bits) 0.9 **** *** 0.7 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus GCT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:1123118-1123238 79 5.46e-05 AAATAATTTT TTTTGTTT CATTACATAG chrX:12592027-12592147 34 5.46e-05 ATGCCGCGGA TTTTGTTT AAATGCCGAC chr3R:11437724-11437844 48 5.46e-05 ACCTCTAgtt tttcgttt gtttgtttgt chr2R:23953963-23954083 12 5.46e-05 AAAGGATATA TTTTGTTT TTTAACTATA chr2R:9400163-9400283 61 5.46e-05 TCACCGATTG TTTCGTTT GCGTTCATTA chr3L:21493093-21493213 43 5.46e-05 AAACGTGATT TTTCGTTT CAATAATTTT chr2L:22129741-22129861 97 5.46e-05 CGATAAGCGC TTTTGTTT ATTGTAAATA chr2R:21635084-21635204 5 5.46e-05 TTTG TTTCGTTT TTTGGGCCTA chr3R:20585660-20585780 23 5.46e-05 GGTTAATTGC TTTCGTTT GGGTTACGGA chr2L:6000241-6000361 26 5.46e-05 TTTCATACGT TTTTGTTT CCTTTTGGCC chr2R:12613129-12613249 18 5.46e-05 ATCAAAATTT TTTCGTTT CGTTAACGCC chr3R:22365801-22365921 110 5.46e-05 TTAAATTTTA TTTCGTTT CGC chr3R:27681876-27681996 9 5.46e-05 CTCCCACG TTTTGTTT GGCGCCGGGT chr2R:17019242-17019362 2 5.46e-05 T TTTCGTTT TTGTTGCTTC chr3R:12429207-12429327 46 1.24e-04 GAGCGTTCTG TTTTTTTT AACAGATAGG chr2L:6338209-6338329 13 1.24e-04 ACACCACAGG TTTTTTTT GGGGGAGTAA chrX:18650338-18650458 87 1.24e-04 CGCTGGAAAT TTTCTTTT CTTCTGTTCA chr2L:6036781-6036901 85 1.24e-04 GCAGCTGTGT TTTCTTTT CCAATTGTTA chr2R:23396550-23396670 53 1.24e-04 TTTTATTGCA TTTTTTTT GTAATTATTC chr2L:6724025-6724145 110 1.24e-04 TCGCAGCCTC TTTTTTTT CAC chr2R:14993733-14993853 18 1.24e-04 GATCCATTCA TTTTTTTT GTAGCCAATT chrX:13090183-13090303 16 1.24e-04 CCTCTCTCTC TTTCTTTT TCAGCAGCAA chr2R:21624347-21624467 41 1.24e-04 AAAAGAGCGT TTTCTTTT CACAACATTT chr2R:23949413-23949533 25 1.24e-04 AATGTCGAGA TTTCTTTT AAACAAAAGA chr2R:21292113-21292233 25 1.24e-04 AGTCTATTTA TTTTTTTT AGGAAATCAA chr3L:15583644-15583764 60 1.67e-04 GCGCAGGTTA TTGTGTTT ATCCAACGAT chr4:571951-572071 76 1.67e-04 TATGTATATT TTGTGTTT TTATATGTCA chr3L:12749977-12750097 108 1.67e-04 GGGCGTTGAA TTGTGTTT GACAA chr3L:4254018-4254138 36 1.67e-04 GTAAAACTTT TTGCGTTT GGGGCCCACT chrX:14242677-14242797 24 1.67e-04 GACGACGCCG TTGCGTTT GTGTTAGGTG chrX:3949012-3949132 14 1.67e-04 TTTTTACATT TTGCGTTT TCAACTGAAG chr3R:15363738-15363858 63 2.35e-04 TTCAAAACAT TTTTATTT CACAAGTACT chr2R:15531985-15532105 103 2.35e-04 CTCGCATTGT TTTCATTT GGGATATGCT chrX:2344498-2344618 65 2.35e-04 GTAGTTCCTA TTTTATTT AATTCATTAA chr2R:4788439-4788559 51 2.35e-04 GTCCCAGCCT TTTCATTT TCTCCTTTAC chr2R:16001068-16001188 24 2.35e-04 CTGTGCGAAA TTTCATTT GGTCATGTTT chr2R:17593067-17593187 61 2.35e-04 CACAGTGGTA TTTCATTT AATGCAATTT chr3R:15320809-15320929 3 2.35e-04 GA TTTTATTT TCTGTGTTTT chr2L:16288479-16288599 111 2.35e-04 TTTTGTTGAT TTTTATTT AG chr2R:18446497-18446617 104 2.90e-04 CGTAGTTCTG TTGTTTTT TATATTTTC chrX:4551841-4551961 75 2.90e-04 AATGCATTCG TTGTTTTT AATACTGAAA chr3L:9487653-9487773 113 2.90e-04 AATATTGCTA TTGTTTTT chr3R:27274981-27275101 101 2.90e-04 GCTGTGGTTT TTGCTTTT AACAATGTTT chr3L:13965326-13965446 86 2.90e-04 ACCActcctg ttgttttt gttcctgttg chr3R:5821309-5821429 75 2.90e-04 ATAAACTAAT TTGTTTTT TCAATCAAAA chr2L:2993151-2993271 55 3.44e-04 TACCACTTAA TTGTATTT GTAATTGTAA chr3L:12145841-12145961 16 3.44e-04 CCAGTGAGTT TTGTATTT GTGCGAGGGC chrX:7104451-7104571 95 3.74e-04 AGATAACCAT TTTAGTTT TTGAATATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:1123118-1123238 5.5e-05 78_[+4]_34 chrX:12592027-12592147 5.5e-05 33_[+4]_79 chr3R:11437724-11437844 5.5e-05 47_[+4]_65 chr2R:23953963-23954083 5.5e-05 11_[+4]_101 chr2R:9400163-9400283 5.5e-05 60_[+4]_52 chr3L:21493093-21493213 5.5e-05 42_[+4]_70 chr2L:22129741-22129861 5.5e-05 96_[+4]_16 chr2R:21635084-21635204 5.5e-05 4_[+4]_108 chr3R:20585660-20585780 5.5e-05 22_[+4]_90 chr2L:6000241-6000361 5.5e-05 25_[+4]_87 chr2R:12613129-12613249 5.5e-05 17_[+4]_95 chr3R:22365801-22365921 5.5e-05 109_[+4]_3 chr3R:27681876-27681996 5.5e-05 8_[+4]_104 chr2R:17019242-17019362 5.5e-05 1_[+4]_111 chr3R:12429207-12429327 0.00012 45_[+4]_67 chr2L:6338209-6338329 0.00012 12_[+4]_100 chrX:18650338-18650458 0.00012 86_[+4]_26 chr2L:6036781-6036901 0.00012 84_[+4]_28 chr2R:23396550-23396670 0.00012 52_[+4]_60 chr2L:6724025-6724145 0.00012 109_[+4]_3 chr2R:14993733-14993853 0.00012 17_[+4]_95 chrX:13090183-13090303 0.00012 15_[+4]_97 chr2R:21624347-21624467 0.00012 40_[+4]_72 chr2R:23949413-23949533 0.00012 24_[+4]_88 chr2R:21292113-21292233 0.00012 24_[+4]_88 chr3L:15583644-15583764 0.00017 59_[+4]_53 chr4:571951-572071 0.00017 75_[+4]_37 chr3L:12749977-12750097 0.00017 107_[+4]_5 chr3L:4254018-4254138 0.00017 35_[+4]_77 chrX:14242677-14242797 0.00017 23_[+4]_89 chrX:3949012-3949132 0.00017 13_[+4]_99 chr3R:15363738-15363858 0.00024 62_[+4]_50 chr2R:15531985-15532105 0.00024 102_[+4]_10 chrX:2344498-2344618 0.00024 64_[+4]_48 chr2R:4788439-4788559 0.00024 50_[+4]_62 chr2R:16001068-16001188 0.00024 23_[+4]_89 chr2R:17593067-17593187 0.00024 60_[+4]_52 chr3R:15320809-15320929 0.00024 2_[+4]_110 chr2L:16288479-16288599 0.00024 110_[+4]_2 chr2R:18446497-18446617 0.00029 103_[+4]_9 chrX:4551841-4551961 0.00029 74_[+4]_38 chr3L:9487653-9487773 0.00029 112_[+4] chr3R:27274981-27275101 0.00029 100_[+4]_12 chr3L:13965326-13965446 0.00029 85_[+4]_27 chr3R:5821309-5821429 0.00029 74_[+4]_38 chr2L:2993151-2993271 0.00034 54_[+4]_58 chr3L:12145841-12145961 0.00034 15_[+4]_97 chrX:7104451-7104571 0.00037 94_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYKTTT width=8 seqs=48 chr4:1123118-1123238 ( 79) TTTTGTTT 1 chrX:12592027-12592147 ( 34) TTTTGTTT 1 chr3R:11437724-11437844 ( 48) TTTCGTTT 1 chr2R:23953963-23954083 ( 12) TTTTGTTT 1 chr2R:9400163-9400283 ( 61) TTTCGTTT 1 chr3L:21493093-21493213 ( 43) TTTCGTTT 1 chr2L:22129741-22129861 ( 97) TTTTGTTT 1 chr2R:21635084-21635204 ( 5) TTTCGTTT 1 chr3R:20585660-20585780 ( 23) TTTCGTTT 1 chr2L:6000241-6000361 ( 26) TTTTGTTT 1 chr2R:12613129-12613249 ( 18) TTTCGTTT 1 chr3R:22365801-22365921 ( 110) TTTCGTTT 1 chr3R:27681876-27681996 ( 9) TTTTGTTT 1 chr2R:17019242-17019362 ( 2) TTTCGTTT 1 chr3R:12429207-12429327 ( 46) TTTTTTTT 1 chr2L:6338209-6338329 ( 13) TTTTTTTT 1 chrX:18650338-18650458 ( 87) TTTCTTTT 1 chr2L:6036781-6036901 ( 85) TTTCTTTT 1 chr2R:23396550-23396670 ( 53) TTTTTTTT 1 chr2L:6724025-6724145 ( 110) TTTTTTTT 1 chr2R:14993733-14993853 ( 18) TTTTTTTT 1 chrX:13090183-13090303 ( 16) TTTCTTTT 1 chr2R:21624347-21624467 ( 41) TTTCTTTT 1 chr2R:23949413-23949533 ( 25) TTTCTTTT 1 chr2R:21292113-21292233 ( 25) TTTTTTTT 1 chr3L:15583644-15583764 ( 60) TTGTGTTT 1 chr4:571951-572071 ( 76) TTGTGTTT 1 chr3L:12749977-12750097 ( 108) TTGTGTTT 1 chr3L:4254018-4254138 ( 36) TTGCGTTT 1 chrX:14242677-14242797 ( 24) TTGCGTTT 1 chrX:3949012-3949132 ( 14) TTGCGTTT 1 chr3R:15363738-15363858 ( 63) TTTTATTT 1 chr2R:15531985-15532105 ( 103) TTTCATTT 1 chrX:2344498-2344618 ( 65) TTTTATTT 1 chr2R:4788439-4788559 ( 51) TTTCATTT 1 chr2R:16001068-16001188 ( 24) TTTCATTT 1 chr2R:17593067-17593187 ( 61) TTTCATTT 1 chr3R:15320809-15320929 ( 3) TTTTATTT 1 chr2L:16288479-16288599 ( 111) TTTTATTT 1 chr2R:18446497-18446617 ( 104) TTGTTTTT 1 chrX:4551841-4551961 ( 75) TTGTTTTT 1 chr3L:9487653-9487773 ( 113) TTGTTTTT 1 chr3R:27274981-27275101 ( 101) TTGCTTTT 1 chr3L:13965326-13965446 ( 86) TTGTTTTT 1 chr3R:5821309-5821429 ( 75) TTGTTTTT 1 chr2L:2993151-2993271 ( 55) TTGTATTT 1 chr3L:12145841-12145961 ( 16) TTGTATTT 1 chrX:7104451-7104571 ( 95) TTTAGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.64666 E= 1.4e+002 -1223 -1223 -1223 183 -1223 -1223 -1223 183 -1223 -1223 40 133 -373 99 -1223 95 -41 -1223 98 34 -1223 -1223 -1223 183 -1223 -1223 -1223 183 -1223 -1223 -1223 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 1.4e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.291667 0.708333 0.020833 0.437500 0.000000 0.541667 0.208333 0.000000 0.437500 0.354167 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYKTTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[TG][TC][GTA]TTT -------------------------------------------------------------------------------- Time 25.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYCACAC MEME-5 width = 8 sites = 16 llr = 156 E-value = 7.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a:a2 pos.-specific C ::6a:8:8 probability G aa:::3:: matrix T ::4::::: bits 2.2 ** * 2.0 ** * 1.7 ** ** * 1.5 ** ** ** Relative 1.3 ** ***** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCCACAC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22741064-22741184 97 8.94e-06 TCACTTCATT GGCCACAC TTACAAGTGG chr3R:21359523-21359643 46 8.94e-06 ATACGCGCAG GGCCACAC GCACTTACTC chrX:9256166-9256286 35 2.03e-05 GCAAAGGTGC GGTCACAC TGGCGGaaat chr3R:24851596-24851716 3 2.03e-05 AC GGTCACAC GCAACACTGC chr3L:21493093-21493213 7 2.03e-05 GCGGCT GGTCACAC TGCGCTAAAC chr2L:11989921-11990041 1 2.03e-05 . GGTCACAC TGTTGCTCAG chr3R:12413716-12413836 105 2.03e-05 TCCCAAGTCT GGTCACAC TGGAAGTG chr3L:11793541-11793661 5 2.03e-05 GTGC GGTCACAC TGCCGTTGAG chr2L:6658516-6658636 6 2.03e-05 CCAAC GGTCACAC TACTTAGACC chr2R:16016924-16017044 48 2.92e-05 ATGGTGTACA GGCCAGAC ACCTCGTCCA chr3L:21831991-21832111 52 2.92e-05 CGAAAATCTC GGCCAGAC AGTCGTCGTC chr2R:14993733-14993853 99 2.92e-05 CGTGCAGAGT GGCCAGAC GTTGAAACGT chr3L:19979622-19979742 69 2.92e-05 AGTCGGGAAG GGCCAGAC TCACAATCGC chrX:13296463-13296583 52 5.18e-05 CCACTCACCT GGCCACAA TCGCATGTGT chr3R:25122722-25122842 18 5.18e-05 GGTACGCAAT GGCCACAA TTCACGATGG chr3L:11074194-11074314 2 5.18e-05 G GGCCACAA TGGCCTCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22741064-22741184 8.9e-06 96_[+5]_16 chr3R:21359523-21359643 8.9e-06 45_[+5]_67 chrX:9256166-9256286 2e-05 34_[+5]_78 chr3R:24851596-24851716 2e-05 2_[+5]_110 chr3L:21493093-21493213 2e-05 6_[+5]_106 chr2L:11989921-11990041 2e-05 [+5]_112 chr3R:12413716-12413836 2e-05 104_[+5]_8 chr3L:11793541-11793661 2e-05 4_[+5]_108 chr2L:6658516-6658636 2e-05 5_[+5]_107 chr2R:16016924-16017044 2.9e-05 47_[+5]_65 chr3L:21831991-21832111 2.9e-05 51_[+5]_61 chr2R:14993733-14993853 2.9e-05 98_[+5]_14 chr3L:19979622-19979742 2.9e-05 68_[+5]_44 chrX:13296463-13296583 5.2e-05 51_[+5]_61 chr3R:25122722-25122842 5.2e-05 17_[+5]_95 chr3L:11074194-11074314 5.2e-05 1_[+5]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYCACAC width=8 seqs=16 chr3R:22741064-22741184 ( 97) GGCCACAC 1 chr3R:21359523-21359643 ( 46) GGCCACAC 1 chrX:9256166-9256286 ( 35) GGTCACAC 1 chr3R:24851596-24851716 ( 3) GGTCACAC 1 chr3L:21493093-21493213 ( 7) GGTCACAC 1 chr2L:11989921-11990041 ( 1) GGTCACAC 1 chr3R:12413716-12413836 ( 105) GGTCACAC 1 chr3L:11793541-11793661 ( 5) GGTCACAC 1 chr2L:6658516-6658636 ( 6) GGTCACAC 1 chr2R:16016924-16017044 ( 48) GGCCAGAC 1 chr3L:21831991-21832111 ( 52) GGCCAGAC 1 chr2R:14993733-14993853 ( 99) GGCCAGAC 1 chr3L:19979622-19979742 ( 69) GGCCAGAC 1 chrX:13296463-13296583 ( 52) GGCCACAA 1 chr3R:25122722-25122842 ( 18) GGCCACAA 1 chr3L:11074194-11074314 ( 2) GGCCACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 7.5e+003 -1064 -1064 218 -1064 -1064 -1064 218 -1064 -1064 135 -1064 64 -1064 218 -1064 -1064 185 -1064 -1064 -1064 -1064 176 18 -1064 185 -1064 -1064 -1064 -56 188 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.562500 0.000000 0.437500 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-5 regular expression -------------------------------------------------------------------------------- GG[CT]CA[CG]AC -------------------------------------------------------------------------------- Time 31.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:11609276-11609396 5.23e-01 120 chr2R:1072162-1072282 8.95e-01 120 chr2R:5980545-5980665 2.21e-01 120 chr3L:211306-211426 3.74e-01 120 chr3L:212687-212807 4.82e-01 120 chr2R:24775093-24775213 3.04e-01 120 chr3L:19979622-19979742 1.29e-02 68_[+5(2.92e-05)]_44 chr3R:21359523-21359643 3.05e-02 45_[+5(8.94e-06)]_67 chr2L:1982216-1982336 5.00e-01 120 chr2L:6658516-6658636 2.99e-03 5_[+5(2.03e-05)]_107 chr3R:31617992-31618112 8.14e-02 75_[+2(2.81e-05)]_37 chrX:3949012-3949132 1.54e-01 120 chr2R:14152718-14152838 8.50e-03 48_[+3(4.97e-05)]_64 chr3L:20028877-20028997 2.11e-01 120 chr2R:21616752-21616872 4.58e-03 112_[+1(1.15e-05)] chrX:14242677-14242797 3.96e-02 120 chr2R:21719840-21719960 2.04e-02 120 chr2R:17019242-17019362 3.21e-02 1_[+4(5.46e-05)]_111 chr3R:9015222-9015342 5.63e-01 120 chr4:481804-481924 4.59e-01 120 chr3R:6456310-6456430 2.18e-01 120 chr2R:14504127-14504247 1.98e-02 107_[+2(7.31e-05)]_5 chr3L:8191369-8191489 1.90e-01 120 chr3L:7654547-7654667 9.78e-01 120 chrX:2225353-2225473 1.07e-01 120 chr3L:6756344-6756464 6.64e-01 120 chrX:15940229-15940349 4.93e-01 120 chr3R:22727094-22727214 7.19e-01 120 chr3R:9748241-9748361 8.66e-02 120 chr2L:16732618-16732738 3.41e-01 120 chr3R:27681876-27681996 2.67e-02 8_[+4(5.46e-05)]_104 chr2L:3452473-3452593 8.75e-02 6_[+3(4.97e-05)]_106 chr2L:13203103-13203223 1.02e-01 120 chr3R:12691792-12691912 9.92e-01 120 chr3R:27582938-27583058 6.73e-01 120 chr2L:10206814-10206934 5.17e-02 15_[+2(2.81e-05)]_97 chr2R:15939739-15939859 5.92e-01 120 chr2R:21292113-21292233 6.38e-02 120 chr2R:5652581-5652701 7.69e-01 120 chr2L:12097884-12098004 4.48e-01 120 chr3R:29816371-29816491 3.66e-01 120 chr3R:21126820-21126940 1.65e-01 120 chr2L:16288479-16288599 1.54e-02 19_[+2(2.81e-05)]_93 chr3R:15320809-15320929 2.66e-01 120 chrX:14226233-14226353 4.01e-01 120 chr2R:10897716-10897836 5.39e-02 120 chr3L:5561447-5561567 4.29e-01 120 chr3R:5821309-5821429 2.97e-02 120 chr3L:23150391-23150511 4.74e-03 69_[+1(2.31e-05)]_12_[+3(4.97e-05)]_\ 23 chr3L:22071721-22071841 4.95e-01 120 chr2R:6042691-6042811 7.54e-01 120 chr3R:24357816-24357936 4.27e-01 120 chr2R:21384146-21384266 4.35e-01 120 chr3R:17795130-17795250 3.30e-01 120 chr3R:22365801-22365921 1.18e-02 109_[+4(5.46e-05)]_3 chr2R:12613129-12613249 1.57e-01 17_[+4(5.46e-05)]_95 chr2L:21758134-21758254 6.99e-01 120 chr3R:7186363-7186483 2.61e-02 98_[+2(9.20e-06)]_14 chr2R:24029367-24029487 4.80e-02 1_[+3(2.77e-05)]_111 chr3L:11793541-11793661 2.10e-03 4_[+5(2.03e-05)]_108 chr2R:17593067-17593187 1.71e-01 120 chr2R:16001068-16001188 1.56e-01 120 chr3R:26967102-26967222 2.23e-01 120 chrX:7104451-7104571 1.96e-04 8_[+3(2.77e-05)]_10_[+1(1.15e-05)]_\ 86 chr3R:18199387-18199507 4.50e-02 54_[+3(7.18e-05)]_58 chrX:647375-647495 1.95e-01 120 chr3L:21574634-21574754 8.54e-01 120 chr3R:12413716-12413836 2.79e-02 104_[+5(2.03e-05)]_8 chr3L:13502875-13502995 2.21e-01 120 chr3R:10767558-10767678 9.29e-01 120 chr2L:6000241-6000361 4.06e-04 25_[+4(5.46e-05)]_43_[+2(2.81e-05)]_\ 36 chr2L:6945209-6945329 5.54e-01 120 chr3R:23126329-23126449 1.64e-01 74_[+1(3.75e-05)]_38 chrX:22540267-22540387 8.86e-02 120 chr2R:15955024-15955144 1.51e-03 86_[+3(2.77e-05)]_26 chr3R:30806260-30806380 7.82e-01 120 chr2L:13000433-13000553 9.27e-01 120 chr3R:4232143-4232263 7.54e-01 120 chr2L:10976994-10977114 3.76e-02 120 chr2R:23949413-23949533 1.11e-02 32_[+3(2.77e-05)]_80 chrX:11616242-11616362 4.82e-01 120 chr3L:8623794-8623914 1.59e-01 92_[+3(4.97e-05)]_20 chr2R:5662973-5663093 2.34e-01 120 chr3L:13965326-13965446 7.72e-03 108_[+2(9.20e-06)]_4 chr3L:1941251-1941371 6.54e-01 120 chr2R:21624347-21624467 3.54e-01 120 chr3R:17085620-17085740 2.23e-01 63_[+3(8.94e-05)]_49 chr3R:14741761-14741881 4.32e-01 120 chrX:13090183-13090303 1.93e-02 120 chr3R:29749395-29749515 2.38e-01 120 chr2R:14993733-14993853 1.07e-03 98_[+5(2.92e-05)]_14 chr2L:869796-869916 1.14e-02 66_[+1(1.15e-05)]_46 chr2R:7917116-7917236 2.66e-01 120 chr3R:31580397-31580517 2.03e-01 120 chrX:927425-927545 8.47e-01 120 chr3R:20635620-20635740 3.70e-01 120 chr2L:8123806-8123926 7.53e-01 120 chr3R:20585660-20585780 5.67e-02 22_[+4(5.46e-05)]_90 chr2L:11989921-11990041 2.22e-02 [+5(2.03e-05)]_112 chr3R:11749277-11749397 1.08e-01 36_[+3(7.18e-05)]_76 chr2L:22538393-22538513 5.55e-01 120 chr2R:9882170-9882290 3.52e-01 120 chr2R:7516205-7516325 6.30e-01 120 chr2R:4788439-4788559 2.73e-01 120 chr2L:4385902-4386022 1.79e-01 120 chr2R:19503019-19503139 1.98e-01 120 chrX:2344498-2344618 4.84e-02 98_[+3(4.97e-05)]_14 chr2L:20734977-20735097 2.79e-01 120 chr2L:4452878-4452998 1.62e-01 54_[+2(1.64e-05)]_58 chr2R:22186004-22186124 3.58e-01 120 chr3R:22741064-22741184 1.38e-03 54_[+1(1.15e-05)]_34_[+5(8.94e-06)]_\ 16 chr2R:18135444-18135564 1.39e-01 120 chr3R:3734983-3735103 9.35e-01 120 chr3L:15816244-15816364 4.46e-01 120 chr3L:11074194-11074314 1.63e-01 1_[+5(5.18e-05)]_111 chr2R:11982739-11982859 8.88e-01 120 chr3R:27274981-27275101 1.95e-03 75_[+3(2.77e-05)]_37 chr2R:5307449-5307569 1.08e-01 120 chr2L:18612098-18612218 4.93e-01 120 chr3L:21831991-21832111 1.90e-01 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5.97e-01 120 chrX:476365-476485 6.50e-01 120 chrX:2727715-2727835 7.67e-01 120 chr3L:23714943-23715063 9.86e-02 101_[+2(8.48e-05)]_11 chr2R:24099243-24099363 7.81e-02 120 chrX:1665057-1665177 9.23e-01 120 chr3R:12429207-12429327 2.84e-03 69_[+1(1.15e-05)]_43 chr2R:15939940-15940060 2.85e-01 120 chr2R:14617958-14618078 4.48e-01 120 chr2R:16027933-16028053 8.48e-03 90_[+1(1.15e-05)]_22 chr3R:25983123-25983243 1.13e-01 120 chr3R:11949732-11949852 3.40e-01 120 chr2L:13021169-13021289 5.99e-02 112_[+3(4.97e-05)] chr2R:21482005-21482125 4.85e-01 120 chr2L:815917-816037 8.01e-01 120 chr3L:835590-835710 4.30e-03 77_[+3(2.77e-05)]_35 chr2R:1344902-1345022 6.65e-01 120 chrX:6683928-6684048 5.82e-01 120 chr2R:20286953-20287073 8.69e-01 120 chr2R:7510090-7510210 1.69e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************