******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4424.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:30248760-30248880 1.0000 120 chr3L:5276659-5276779 1.0000 120 chr3R:19796974-19797094 1.0000 120 chr3L:18234198-18234318 1.0000 120 chr2R:12019921-12020041 1.0000 120 chr2R:22243336-22243456 1.0000 120 chrX:5300096-5300216 1.0000 120 chrX:709634-709754 1.0000 120 chr3L:18186365-18186485 1.0000 120 chr2R:10798696-10798816 1.0000 120 chr3L:11553770-11553890 1.0000 120 chr2R:22243541-22243661 1.0000 120 chr3R:9516471-9516591 1.0000 120 chrX:10014877-10014997 1.0000 120 chr2L:11014153-11014273 1.0000 120 chr2R:18878176-18878296 1.0000 120 chr3L:11553564-11553684 1.0000 120 chrX:11382727-11382847 1.0000 120 chrX:10015078-10015198 1.0000 120 chrX:11402194-11402314 1.0000 120 chr2L:4647560-4647680 1.0000 120 chr4:482810-482930 1.0000 120 chr2R:17079166-17079286 1.0000 120 chr3L:18186573-18186693 1.0000 120 chr3L:10857509-10857629 1.0000 120 chr2L:14409822-14409942 1.0000 120 chr2R:19406638-19406758 1.0000 120 chr2R:12025325-12025445 1.0000 120 chr2R:13864940-13865060 1.0000 120 chr3R:12548345-12548465 1.0000 120 chr3L:4021402-4021522 1.0000 120 chr3R:10582696-10582816 1.0000 120 chr2L:16842044-16842164 1.0000 120 chr3L:5276862-5276982 1.0000 120 chr2L:14490516-14490636 1.0000 120 chr3R:19797185-19797305 1.0000 120 chrX:13656945-13657065 1.0000 120 chrX:11382936-11383056 1.0000 120 chr3R:28858301-28858421 1.0000 120 chr2L:4647792-4647912 1.0000 120 chr3L:5630351-5630471 1.0000 120 chr3R:30249013-30249133 1.0000 120 chr3L:7953048-7953168 1.0000 120 chr3R:21326929-21327049 1.0000 120 chr3L:3188743-3188863 1.0000 120 chr2L:2785410-2785530 1.0000 120 chr3R:10636157-10636277 1.0000 120 chr2L:19058991-19059111 1.0000 120 chr3L:21047118-21047238 1.0000 120 chr2R:22661318-22661438 1.0000 120 chr3L:745656-745776 1.0000 120 chr3L:14816895-14817015 1.0000 120 chr2R:12020123-12020243 1.0000 120 chr2L:4133157-4133277 1.0000 120 chr3R:5216281-5216401 1.0000 120 chr3R:14873633-14873753 1.0000 120 chr3L:15693190-15693310 1.0000 120 chr2R:22270841-22270961 1.0000 120 chr2R:21168797-21168917 1.0000 120 chrX:13764532-13764652 1.0000 120 chrX:18525076-18525196 1.0000 120 chr2R:22886220-22886340 1.0000 120 chr3L:10737096-10737216 1.0000 120 chr3L:19338426-19338546 1.0000 120 chr3R:27988636-27988756 1.0000 120 chrX:20644103-20644223 1.0000 120 chr3R:11872816-11872936 1.0000 120 chr3R:14002160-14002280 1.0000 120 chr3R:21824182-21824302 1.0000 120 chr2R:15351356-15351476 1.0000 120 chr3L:1869008-1869128 1.0000 120 chr3L:1534255-1534375 1.0000 120 chr3R:11869901-11870021 1.0000 120 chr3L:3851962-3852082 1.0000 120 chr2R:14971113-14971233 1.0000 120 chr3L:2821299-2821419 1.0000 120 chr3L:14335971-14336091 1.0000 120 chrX:19243401-19243521 1.0000 120 chr3R:27440679-27440799 1.0000 120 chr2L:3435221-3435341 1.0000 120 chr2R:19874609-19874729 1.0000 120 chr3R:7913363-7913483 1.0000 120 chr3R:6708987-6709107 1.0000 120 chr2R:22242159-22242279 1.0000 120 chr2R:17533788-17533908 1.0000 120 chr2R:21514478-21514598 1.0000 120 chr3L:15532907-15533027 1.0000 120 chr4:483012-483132 1.0000 120 chr2R:12174479-12174599 1.0000 120 chr2L:18930921-18931041 1.0000 120 chr2L:7295126-7295246 1.0000 120 chr3R:26444238-26444358 1.0000 120 chr3L:12037904-12038024 1.0000 120 chr2L:6819559-6819679 1.0000 120 chr3L:5365283-5365403 1.0000 120 chr2L:1926015-1926135 1.0000 120 chr2R:16571763-16571883 1.0000 120 chr2R:9681971-9682091 1.0000 120 chr3L:8445137-8445257 1.0000 120 chr3R:23787441-23787561 1.0000 120 chr3L:19294407-19294527 1.0000 120 chr3R:14077172-14077292 1.0000 120 chr3L:166622-166742 1.0000 120 chrX:7166484-7166604 1.0000 120 chr3L:6807610-6807730 1.0000 120 chr3R:10628361-10628481 1.0000 120 chr3L:14978151-14978271 1.0000 120 chr3R:13469363-13469483 1.0000 120 chr3R:16769553-16769673 1.0000 120 chr3R:10203719-10203839 1.0000 120 chr3R:13799738-13799858 1.0000 120 chr3L:16452425-16452545 1.0000 120 chr2L:14377085-14377205 1.0000 120 chr3R:26900142-26900262 1.0000 120 chr2L:1456445-1456565 1.0000 120 chr3R:29690628-29690748 1.0000 120 chr3R:22108440-22108560 1.0000 120 chr3L:13189416-13189536 1.0000 120 chr2L:7635294-7635414 1.0000 120 chr4:1053986-1054106 1.0000 120 chr2L:14537527-14537647 1.0000 120 chr2L:19121079-19121199 1.0000 120 chrX:8125353-8125473 1.0000 120 chr3R:17680861-17680981 1.0000 120 chr2L:5982395-5982515 1.0000 120 chrX:12242520-12242640 1.0000 120 chr2L:3598581-3598701 1.0000 120 chr3R:31704666-31704786 1.0000 120 chr3L:10206336-10206456 1.0000 120 chr3R:13446677-13446797 1.0000 120 chr3L:1578644-1578764 1.0000 120 chrX:9119377-9119497 1.0000 120 chr3L:11328376-11328496 1.0000 120 chr2L:6357092-6357212 1.0000 120 chr3L:20771167-20771287 1.0000 120 chrX:2396639-2396759 1.0000 120 chr3R:16771725-16771845 1.0000 120 chr3L:19899090-19899210 1.0000 120 chrX:20631237-20631357 1.0000 120 chrX:19225069-19225189 1.0000 120 chr3L:9729898-9730018 1.0000 120 chr3L:7151942-7152062 1.0000 120 chr3R:22494642-22494762 1.0000 120 chr3R:24817151-24817271 1.0000 120 chr2R:9132146-9132266 1.0000 120 chrX:8777234-8777354 1.0000 120 chr3R:15652773-15652893 1.0000 120 chr3L:10931649-10931769 1.0000 120 chr3R:11617492-11617612 1.0000 120 chr3R:17681070-17681190 1.0000 120 chrX:19009021-19009141 1.0000 120 chr3L:10784712-10784832 1.0000 120 chrX:20507884-20508004 1.0000 120 chr3R:6760840-6760960 1.0000 120 chr2L:16544615-16544735 1.0000 120 chr3R:19165039-19165159 1.0000 120 chr3L:21821796-21821916 1.0000 120 chr3L:5988779-5988899 1.0000 120 chr3L:10694087-10694207 1.0000 120 chr2L:10543604-10543724 1.0000 120 chr2L:8528523-8528643 1.0000 120 chr3L:5987855-5987975 1.0000 120 chr4:406942-407062 1.0000 120 chr3L:9614088-9614208 1.0000 120 chr3R:11368903-11369023 1.0000 120 chr2L:3856526-3856646 1.0000 120 chrX:7571337-7571457 1.0000 120 chr3L:12526957-12527077 1.0000 120 chr2L:21096585-21096705 1.0000 120 chr2L:3172957-3173077 1.0000 120 chr3R:10648895-10649015 1.0000 120 chr3R:29772369-29772489 1.0000 120 chr2L:522907-523027 1.0000 120 chr3L:16060830-16060950 1.0000 120 chr3R:6791411-6791531 1.0000 120 chr2R:21018405-21018525 1.0000 120 chr3R:8960461-8960581 1.0000 120 chr3L:2159062-2159182 1.0000 120 chr3L:20630817-20630937 1.0000 120 chrX:3367446-3367566 1.0000 120 chr3R:31134151-31134271 1.0000 120 chr3L:13929257-13929377 1.0000 120 chr3L:15311636-15311756 1.0000 120 chrX:19770252-19770372 1.0000 120 chr2L:19377521-19377641 1.0000 120 chr3L:8024899-8025019 1.0000 120 chr3R:16837894-16838014 1.0000 120 chr2L:19867039-19867159 1.0000 120 chr3L:4158534-4158654 1.0000 120 chr3R:15837208-15837328 1.0000 120 chr2L:11331824-11331944 1.0000 120 chrX:5973548-5973668 1.0000 120 chr2R:18514013-18514133 1.0000 120 chrX:13644213-13644333 1.0000 120 chr2R:16178637-16178757 1.0000 120 chr3L:15321039-15321159 1.0000 120 chr2R:12337698-12337818 1.0000 120 chr2L:9598471-9598591 1.0000 120 chr3L:14999749-14999869 1.0000 120 chr3R:13999685-13999805 1.0000 120 chr3R:9605222-9605342 1.0000 120 chr2R:15247869-15247989 1.0000 120 chr3L:9028147-9028267 1.0000 120 chr4:404475-404595 1.0000 120 chr3R:27937953-27938073 1.0000 120 chrX:3068405-3068525 1.0000 120 chr3L:21057151-21057271 1.0000 120 chr3R:27245326-27245446 1.0000 120 chr2L:14490717-14490837 1.0000 120 chr2L:5238346-5238466 1.0000 120 chr2L:11189179-11189299 1.0000 120 chr2R:12468426-12468546 1.0000 120 chr2R:18850634-18850754 1.0000 120 chr2L:18900065-18900185 1.0000 120 chr3L:642584-642704 1.0000 120 chr2R:20086126-20086246 1.0000 120 chr3R:29522302-29522422 1.0000 120 chr3R:20588522-20588642 1.0000 120 chr2R:18125859-18125979 1.0000 120 chr2L:7270396-7270516 1.0000 120 chr3L:8629014-8629134 1.0000 120 chr2R:13482335-13482455 1.0000 120 chr3L:17242234-17242354 1.0000 120 chr2L:10856613-10856733 1.0000 120 chr2L:5245757-5245877 1.0000 120 chr3L:14325456-14325576 1.0000 120 chr3L:1350755-1350875 1.0000 120 chr2L:16743142-16743262 1.0000 120 chr3L:797068-797188 1.0000 120 chr3R:8955005-8955125 1.0000 120 chr3L:10845230-10845350 1.0000 120 chr3L:18250899-18251019 1.0000 120 chrX:12595784-12595904 1.0000 120 chr3L:11350890-11351010 1.0000 120 chr2R:20154002-20154122 1.0000 120 chr3L:613713-613833 1.0000 120 chr3R:5856395-5856515 1.0000 120 chr3L:18204152-18204272 1.0000 120 chr3L:13911721-13911841 1.0000 120 chr3L:11398763-11398883 1.0000 120 chr2R:12605704-12605824 1.0000 120 chrX:15384083-15384203 1.0000 120 chr3L:12271327-12271447 1.0000 120 chr2R:11435222-11435342 1.0000 120 chr2L:8573001-8573121 1.0000 120 chr3L:4607855-4607975 1.0000 120 chr2L:19159326-19159446 1.0000 120 chr2L:20097304-20097424 1.0000 120 chr2L:21149244-21149364 1.0000 120 chr2L:14519407-14519527 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG4424/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4424.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.337 C 0.158 G 0.167 T 0.338 Background letter frequencies (from file dataset with add-one prior applied): A 0.337 C 0.158 G 0.167 T 0.338 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF NGCRSKGC MEME-1 width = 8 sites = 36 llr = 316 E-value = 3.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif NGCRSKGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3::6:::: pos.-specific C 2:a:62:7 probability G 2a:344a3 matrix T 3::1:4:: bits 2.7 ** * 2.4 ** * 2.1 ** * 1.9 ** ** Relative 1.6 ** * ** Entropy 1.3 ** * ** (12.7 bits) 1.1 ** * ** 0.8 ******* 0.5 ******* 0.3 ******* 0.0 -------- Multilevel TGCACGGC consensus A GGT G sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NGCRSKGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5276862-5276982 71 1.46e-06 GTCTCTTTCC CGCGCGGC AGTTGCAACA chr3L:5276659-5276779 40 1.46e-06 CTCTGACTGC CGCACGGC AACACTGTtc chr2R:12019921-12020041 98 3.01e-06 AGTCGTTTGT GGCGCGGC AAGTTTGAAG chr3R:28858301-28858421 30 4.56e-06 CTGCGCCGCA CGCAGGGC GCATAGAGTC chr3L:10845230-10845350 35 9.32e-06 CATTTTCGAT GGCAGGGC AACACTTGCG chr2L:11014153-11014273 70 9.32e-06 TGCAGTCCGC TGCACGGC AACACTGGCA chr3L:18234198-18234318 56 9.32e-06 TTCCACCTGC TGCACGGC AACACTGGTC chr2R:17079166-17079286 23 1.24e-05 GATTACTTTC AGCACGGC AACACTGCTT chr2L:14537527-14537647 9 1.87e-05 GGGCCTTC TGCAGGGC TGGATAAAAT chr2R:10798696-10798816 84 1.87e-05 GCACGTCCTG CGCACTGC GCACGACGCG chr3L:5987855-5987975 59 2.65e-05 GCATTGCGGT CGCGCCGC CACTTCCTGT chr2L:5245757-5245877 94 3.27e-05 AATAATTTCT CGCAGTGC ATCATTTTCT chr2L:14490717-14490837 17 4.39e-05 GCATGCAGCA GGCGGTGC TCCTCTAACG chr2R:12337698-12337818 80 4.39e-05 TTTCACAGTC TGCACTGC CACCTATTTA chr3R:14873633-14873753 75 4.39e-05 TTTGGCAGTT GGCAGTGC GTGAAATAGT chr2L:4133157-4133277 44 4.39e-05 GTTCTAAAAA TGCACTGC TCGAGCATTT chr3L:14816895-14817015 107 4.39e-05 TGAACCACTG TGCACTGC ACAGTA chr3R:30249013-30249133 78 4.39e-05 GAGTTTGGGG GGCACGGG TCACCTTTGA chr3R:19797185-19797305 10 5.79e-05 ctgcaatgt ggcggcgc cttgaatctg chr3R:27245326-27245446 18 6.96e-05 CAGTCGCCAG TGCAGTGC GTTGGGGTTT chr2L:9598471-9598591 21 6.96e-05 GGCGGTGGTC TGCACGGG GAGAAATGAT chr3R:27937953-27938073 90 7.25e-05 CTAAATCATA AGCGCCGC GGGGTGTTCT chr2L:21149244-21149364 40 8.56e-05 tcataaaaat agcagtgc ttgggacctg chr3L:8629014-8629134 21 8.56e-05 GTTTTAAACA AGCGCGGG TGCACCAAGA chr2L:8528523-8528643 25 8.56e-05 CCGTCGGACA AGCAGTGC GACTTGGGAT chr3R:16771725-16771845 45 8.56e-05 ATAGTGGTGA AGCGCGGG AGAACTTTCA chr3R:9516471-9516591 107 8.56e-05 ACTATTGCCG TGCAGCGC AGTGTA chr2L:16743142-16743262 11 9.87e-05 GCCAGCAGAT GGCGCTGG TGAAGTAATC chr2L:14490516-14490636 9 9.87e-05 ACTCACTG AGCGGCGC TCTCAGCGCT chr3L:5988779-5988899 7 1.19e-04 GATTGA GGCGGTGG TGGTGGGGGA chr3L:11553564-11553684 28 1.19e-04 AGCAGCTGAC TGCGCTGG CGTTGCCACA chr2L:3172957-3173077 111 1.40e-04 ACGCCTTAAC CGCTCGGC CA chr2L:21096585-21096705 72 1.40e-04 CGTCCCACTG TGCAGTGG TGGGTGGCGG chr2L:5982395-5982515 78 1.40e-04 GTGCTAATAT CGCTCGGC TGCTCTCGCC chr3L:9614088-9614208 36 1.54e-04 CACTATTGCA AGCAGTGG ATGCAAGCAG chr3L:4021402-4021522 57 1.62e-04 AGCCGTTACG AGCAGCGG GAAACACAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NGCRSKGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5276862-5276982 1.5e-06 70_[+1]_42 chr3L:5276659-5276779 1.5e-06 39_[+1]_73 chr2R:12019921-12020041 3e-06 97_[+1]_15 chr3R:28858301-28858421 4.6e-06 29_[+1]_83 chr3L:10845230-10845350 9.3e-06 34_[+1]_78 chr2L:11014153-11014273 9.3e-06 69_[+1]_43 chr3L:18234198-18234318 9.3e-06 55_[+1]_57 chr2R:17079166-17079286 1.2e-05 22_[+1]_90 chr2L:14537527-14537647 1.9e-05 8_[+1]_104 chr2R:10798696-10798816 1.9e-05 83_[+1]_29 chr3L:5987855-5987975 2.7e-05 58_[+1]_54 chr2L:5245757-5245877 3.3e-05 93_[+1]_19 chr2L:14490717-14490837 4.4e-05 16_[+1]_96 chr2R:12337698-12337818 4.4e-05 79_[+1]_33 chr3R:14873633-14873753 4.4e-05 74_[+1]_38 chr2L:4133157-4133277 4.4e-05 43_[+1]_69 chr3L:14816895-14817015 4.4e-05 106_[+1]_6 chr3R:30249013-30249133 4.4e-05 77_[+1]_35 chr3R:19797185-19797305 5.8e-05 9_[+1]_103 chr3R:27245326-27245446 7e-05 17_[+1]_95 chr2L:9598471-9598591 7e-05 20_[+1]_92 chr3R:27937953-27938073 7.3e-05 89_[+1]_23 chr2L:21149244-21149364 8.6e-05 39_[+1]_73 chr3L:8629014-8629134 8.6e-05 20_[+1]_92 chr2L:8528523-8528643 8.6e-05 24_[+1]_88 chr3R:16771725-16771845 8.6e-05 44_[+1]_68 chr3R:9516471-9516591 8.6e-05 106_[+1]_6 chr2L:16743142-16743262 9.9e-05 10_[+1]_102 chr2L:14490516-14490636 9.9e-05 8_[+1]_104 chr3L:5988779-5988899 0.00012 6_[+1]_106 chr3L:11553564-11553684 0.00012 27_[+1]_85 chr2L:3172957-3173077 0.00014 110_[+1]_2 chr2L:21096585-21096705 0.00014 71_[+1]_41 chr2L:5982395-5982515 0.00014 77_[+1]_35 chr3L:9614088-9614208 0.00015 35_[+1]_77 chr3L:4021402-4021522 0.00016 56_[+1]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NGCRSKGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NGCRSKGC width=8 seqs=36 chr3L:5276862-5276982 ( 71) CGCGCGGC 1 chr3L:5276659-5276779 ( 40) CGCACGGC 1 chr2R:12019921-12020041 ( 98) GGCGCGGC 1 chr3R:28858301-28858421 ( 30) CGCAGGGC 1 chr3L:10845230-10845350 ( 35) GGCAGGGC 1 chr2L:11014153-11014273 ( 70) TGCACGGC 1 chr3L:18234198-18234318 ( 56) TGCACGGC 1 chr2R:17079166-17079286 ( 23) AGCACGGC 1 chr2L:14537527-14537647 ( 9) TGCAGGGC 1 chr2R:10798696-10798816 ( 84) CGCACTGC 1 chr3L:5987855-5987975 ( 59) CGCGCCGC 1 chr2L:5245757-5245877 ( 94) CGCAGTGC 1 chr2L:14490717-14490837 ( 17) GGCGGTGC 1 chr2R:12337698-12337818 ( 80) TGCACTGC 1 chr3R:14873633-14873753 ( 75) GGCAGTGC 1 chr2L:4133157-4133277 ( 44) TGCACTGC 1 chr3L:14816895-14817015 ( 107) TGCACTGC 1 chr3R:30249013-30249133 ( 78) GGCACGGG 1 chr3R:19797185-19797305 ( 10) GGCGGCGC 1 chr3R:27245326-27245446 ( 18) TGCAGTGC 1 chr2L:9598471-9598591 ( 21) TGCACGGG 1 chr3R:27937953-27938073 ( 90) AGCGCCGC 1 chr2L:21149244-21149364 ( 40) AGCAGTGC 1 chr3L:8629014-8629134 ( 21) AGCGCGGG 1 chr2L:8528523-8528643 ( 25) AGCAGTGC 1 chr3R:16771725-16771845 ( 45) AGCGCGGG 1 chr3R:9516471-9516591 ( 107) TGCAGCGC 1 chr2L:16743142-16743262 ( 11) GGCGCTGG 1 chr2L:14490516-14490636 ( 9) AGCGGCGC 1 chr3L:5988779-5988899 ( 7) GGCGGTGG 1 chr3L:11553564-11553684 ( 28) TGCGCTGG 1 chr2L:3172957-3173077 ( 111) CGCTCGGC 1 chr2L:21096585-21096705 ( 72) TGCAGTGG 1 chr2L:5982395-5982515 ( 78) CGCTCGGC 1 chr3L:9614088-9614208 ( 36) AGCAGTGG 1 chr3L:4021402-4021522 ( 57) AGCAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NGCRSKGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 3.9e-004 -43 49 41 -14 -1181 -1181 258 -1181 -1181 266 -1181 -1181 86 -1181 99 -260 -1181 181 141 -1181 -1181 7 132 30 -1181 -1181 258 -1181 -1181 219 73 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NGCRSKGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 3.9e-004 0.250000 0.222222 0.222222 0.305556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.611111 0.000000 0.333333 0.055556 0.000000 0.555556 0.444444 0.000000 0.000000 0.166667 0.416667 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.277778 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NGCRSKGC MEME-1 regular expression -------------------------------------------------------------------------------- [TACG]GC[AG][CG][GT]G[CG] -------------------------------------------------------------------------------- Time 7.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGHGCT MEME-2 width = 8 sites = 10 llr = 107 E-value = 4.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGHGCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1:3::: pos.-specific C :99:3:9: probability G a1:a:91: matrix T ::::41:a bits 2.7 * * 2.4 * * 2.1 **** ** 1.9 **** ** Relative 1.6 **** *** Entropy 1.3 **** *** (15.5 bits) 1.1 **** *** 0.8 **** *** 0.5 **** *** 0.3 ******** 0.0 -------- Multilevel GCCGTGCT consensus A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGHGCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16743142-16743262 35 9.81e-07 AATCTTATGG GCCGCGCT TTTTGAGGTA chr3L:10737096-10737216 38 3.08e-06 AAACAGTATG GCCGTGCT GCAGTCGCAA chr3R:19797185-19797305 81 3.08e-06 GTTGCCGCAC GCCGTGCT TGACGCGATT chr2R:10798696-10798816 66 3.08e-06 GGCCAGTGTT GCCGTGCT GCACGTCCTG chr3R:9516471-9516591 72 5.17e-06 GGACAGTGTT GCCGAGCT GCTCCAAGTT chr2R:12019921-12020041 75 5.17e-06 TGCCAGTGCT GCCGAGCT GCAGCAGTCG chr2L:14490516-14490636 53 1.17e-05 GACGAGTGTT GCCGTGGT GCAGCCATAT chr2L:14490717-14490837 55 2.02e-05 GCCAAAGTGT GCAGCGCT GCTCGCCGGA chr2L:11014153-11014273 105 2.02e-05 GTTGCTGCTG GGCGAGCT Ggctgttg chr3R:19796974-19797094 64 2.02e-05 tgctaatatg gccgctct cgctttgact -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGHGCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16743142-16743262 9.8e-07 34_[+2]_78 chr3L:10737096-10737216 3.1e-06 37_[+2]_75 chr3R:19797185-19797305 3.1e-06 80_[+2]_32 chr2R:10798696-10798816 3.1e-06 65_[+2]_47 chr3R:9516471-9516591 5.2e-06 71_[+2]_41 chr2R:12019921-12020041 5.2e-06 74_[+2]_38 chr2L:14490516-14490636 1.2e-05 52_[+2]_60 chr2L:14490717-14490837 2e-05 54_[+2]_58 chr2L:11014153-11014273 2e-05 104_[+2]_8 chr3R:19796974-19797094 2e-05 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGHGCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGHGCT width=8 seqs=10 chr2L:16743142-16743262 ( 35) GCCGCGCT 1 chr3L:10737096-10737216 ( 38) GCCGTGCT 1 chr3R:19797185-19797305 ( 81) GCCGTGCT 1 chr2R:10798696-10798816 ( 66) GCCGTGCT 1 chr3R:9516471-9516591 ( 72) GCCGAGCT 1 chr2R:12019921-12020041 ( 75) GCCGAGCT 1 chr2L:14490516-14490636 ( 53) GCCGTGGT 1 chr2L:14490717-14490837 ( 55) GCAGCGCT 1 chr2L:11014153-11014273 ( 105) GGCGAGCT 1 chr3R:19796974-19797094 ( 64) GCCGCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGHGCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 4.5e+002 -997 -997 258 -997 -997 251 -74 -997 -175 251 -997 -997 -997 -997 258 -997 -17 92 -997 24 -997 -997 243 -175 -997 251 -74 -997 -997 -997 -997 157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGHGCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.5e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.300000 0.300000 0.000000 0.400000 0.000000 0.000000 0.900000 0.100000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGHGCT MEME-2 regular expression -------------------------------------------------------------------------------- GCCG[TAC]GCT -------------------------------------------------------------------------------- Time 13.87 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTCTCT MEME-3 width = 8 sites = 12 llr = 127 E-value = 2.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTCTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 7:9:a:a: probability G 281::::: matrix T 22:a:a:a bits 2.7 * * 2.4 * * 2.1 * * * 1.9 ** * * Relative 1.6 ******* Entropy 1.3 ******** (15.2 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCTCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14490717-14490837 76 4.02e-06 CGCCGGAGAG CGCTCTCT CGCGAGTGAG chr3L:9729898-9730018 89 4.02e-06 GATCTGGCAA CGCTCTCT TAACCTGTCA chr3L:10737096-10737216 88 4.02e-06 CAAACTCTCT CGCTCTCT CACGAGAGAA chr3R:5216281-5216401 113 4.02e-06 CTTCCAGTGG CGCTCTCT chr2R:12019921-12020041 5 4.02e-06 TTAG CGCTCTCT CCGGTGGAAT chr3L:1869008-1869128 40 8.27e-06 TACATATATT GGCTCTCT TGCTGACTTT chr3L:18234198-18234318 34 8.27e-06 TTTGATATCT GGCTCTCT GATTTTCCAC chr3L:17242234-17242354 101 1.69e-05 GAAGCAATCA TGCTCTCT TCAGTTAGTG chr2L:14490516-14490636 34 1.69e-05 GCTCAACTGT TGCTCTCT GGACGAGTGT chr3L:11328376-11328496 69 2.50e-05 TTGTTAAATT CTCTCTCT CAAAAAAAAG chr3R:29690628-29690748 102 2.50e-05 TGACTATTTT CTCTCTCT GCAGCAACAA chr3L:5630351-5630471 36 2.92e-05 TTCAAAAGTA CGGTCTCT AATCCCGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14490717-14490837 4e-06 75_[+3]_37 chr3L:9729898-9730018 4e-06 88_[+3]_24 chr3L:10737096-10737216 4e-06 87_[+3]_25 chr3R:5216281-5216401 4e-06 112_[+3] chr2R:12019921-12020041 4e-06 4_[+3]_108 chr3L:1869008-1869128 8.3e-06 39_[+3]_73 chr3L:18234198-18234318 8.3e-06 33_[+3]_79 chr3L:17242234-17242354 1.7e-05 100_[+3]_12 chr2L:14490516-14490636 1.7e-05 33_[+3]_79 chr3L:11328376-11328496 2.5e-05 68_[+3]_44 chr3R:29690628-29690748 2.5e-05 101_[+3]_11 chr3L:5630351-5630471 2.9e-05 35_[+3]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTCTCT width=8 seqs=12 chr2L:14490717-14490837 ( 76) CGCTCTCT 1 chr3L:9729898-9730018 ( 89) CGCTCTCT 1 chr3L:10737096-10737216 ( 88) CGCTCTCT 1 chr3R:5216281-5216401 ( 113) CGCTCTCT 1 chr2R:12019921-12020041 ( 5) CGCTCTCT 1 chr3L:1869008-1869128 ( 40) GGCTCTCT 1 chr3L:18234198-18234318 ( 34) GGCTCTCT 1 chr3L:17242234-17242354 ( 101) TGCTCTCT 1 chr2L:14490516-14490636 ( 34) TGCTCTCT 1 chr3L:11328376-11328496 ( 69) CTCTCTCT 1 chr3R:29690628-29690748 ( 102) CTCTCTCT 1 chr3L:5630351-5630471 ( 36) CGGTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 2.7e+002 -1023 207 -1 -102 -1023 -1023 231 -102 -1023 253 -100 -1023 -1023 -1023 -1023 157 -1023 266 -1023 -1023 -1023 -1023 -1023 157 -1023 266 -1023 -1023 -1023 -1023 -1023 157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.7e+002 0.000000 0.666667 0.166667 0.166667 0.000000 0.000000 0.833333 0.166667 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTCTCT MEME-3 regular expression -------------------------------------------------------------------------------- CGCTCTCT -------------------------------------------------------------------------------- Time 20.11 secs. ******************************************************************************** ******************************************************************************** MOTIF GTAGTAGW MEME-4 width = 8 sites = 23 llr = 212 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTAGTAGW MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::9:6 pos.-specific C :1::2::: probability G a::a:1a: matrix T :9::8::4 bits 2.7 * * * 2.4 * * * 2.1 * * * 1.9 * * * Relative 1.6 * ** * Entropy 1.3 * ** ** (13.3 bits) 1.1 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTAGTAGA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTAGW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20771167-20771287 52 2.04e-05 GCAATATTAT GTAGTAGA ACATATATTT chr3R:14873633-14873753 57 2.04e-05 AGCGAAAAAC GTAGTAGA TTTGGCAGTT chr3R:5216281-5216401 38 2.04e-05 GACAAAAATC GTAGTAGA AAAGTAAGCA chr2L:2785410-2785530 71 2.04e-05 tagtagtata gtagtaga gtagtagtag chr3L:3188743-3188863 78 2.04e-05 AATTTCAGAT GTAGTAGA ATCTGTACTC chr3R:10582696-10582816 76 2.04e-05 ACTCAAAATA GTAGTAGA AATTAGCAGT chr2R:19406638-19406758 65 2.04e-05 cgcagaagta gtagtaga aaaggtagta chr2L:14409822-14409942 48 2.04e-05 GCCAAAAAGC GTAGTAGA ATTGGCGGTT chr2R:17079166-17079286 7 2.04e-05 ATAAAA GTAGTAGA TTACTTTCAG chr3L:18186365-18186485 95 2.04e-05 AGTTAAAAAG GTAGTAGA AAAAAGGGAG chr3R:21326929-21327049 71 4.08e-05 agtacgaata gtagtagt agggtaagta chr3R:12548345-12548465 32 4.08e-05 CGGGAAAGTA GTAGTAGT AAAATTCGAG chr2R:13864940-13865060 47 4.08e-05 agtattagta gtagtagt actcgtaagt chrX:10015078-10015198 97 4.08e-05 agtagcagaa gtagtagt agtagggtag chrX:10014877-10014997 73 4.08e-05 gatagtagta gtagtagt agtagtagca chrX:5300096-5300216 59 4.08e-05 agtagtagta gtagtagt agtagtagta chr3L:10857509-10857629 55 5.03e-05 CGACCAAAAG GTAGCAGA AAACGGAGTA chr3L:11553564-11553684 88 5.03e-05 CAGTAGAATA GTAGCAGA ATCTACTACT chr3R:31134151-31134271 59 8.34e-05 TTGGCAGGTA GCagcaga tgctagagcg chr3L:18204152-18204272 49 9.79e-05 TTTTCTCAGT GCAGCAGT TTCAAAAGCA chr2R:12019921-12020041 83 9.79e-05 CTGCCGAGCT GCAGCAGT CGTTTGTGGC chr4:406942-407062 103 1.08e-04 GAGGGCGCCT GTAGTGGT TTAATTTATA chr3R:30248760-30248880 74 1.08e-04 AGTTGAAAAA GTAGTGGT TGCAAATACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTAGW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20771167-20771287 2e-05 51_[+4]_61 chr3R:14873633-14873753 2e-05 56_[+4]_56 chr3R:5216281-5216401 2e-05 37_[+4]_75 chr2L:2785410-2785530 2e-05 70_[+4]_42 chr3L:3188743-3188863 2e-05 77_[+4]_35 chr3R:10582696-10582816 2e-05 75_[+4]_37 chr2R:19406638-19406758 2e-05 64_[+4]_48 chr2L:14409822-14409942 2e-05 47_[+4]_65 chr2R:17079166-17079286 2e-05 6_[+4]_106 chr3L:18186365-18186485 2e-05 94_[+4]_18 chr3R:21326929-21327049 4.1e-05 70_[+4]_42 chr3R:12548345-12548465 4.1e-05 31_[+4]_81 chr2R:13864940-13865060 4.1e-05 46_[+4]_66 chrX:10015078-10015198 4.1e-05 96_[+4]_16 chrX:10014877-10014997 4.1e-05 72_[+4]_40 chrX:5300096-5300216 4.1e-05 58_[+4]_54 chr3L:10857509-10857629 5e-05 54_[+4]_58 chr3L:11553564-11553684 5e-05 87_[+4]_25 chr3R:31134151-31134271 8.3e-05 58_[+4]_54 chr3L:18204152-18204272 9.8e-05 48_[+4]_64 chr2R:12019921-12020041 9.8e-05 82_[+4]_30 chr4:406942-407062 0.00011 102_[+4]_10 chr3R:30248760-30248880 0.00011 73_[+4]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTAGW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTAGTAGW width=8 seqs=23 chr3L:20771167-20771287 ( 52) GTAGTAGA 1 chr3R:14873633-14873753 ( 57) GTAGTAGA 1 chr3R:5216281-5216401 ( 38) GTAGTAGA 1 chr2L:2785410-2785530 ( 71) GTAGTAGA 1 chr3L:3188743-3188863 ( 78) GTAGTAGA 1 chr3R:10582696-10582816 ( 76) GTAGTAGA 1 chr2R:19406638-19406758 ( 65) GTAGTAGA 1 chr2L:14409822-14409942 ( 48) GTAGTAGA 1 chr2R:17079166-17079286 ( 7) GTAGTAGA 1 chr3L:18186365-18186485 ( 95) GTAGTAGA 1 chr3R:21326929-21327049 ( 71) GTAGTAGT 1 chr3R:12548345-12548465 ( 32) GTAGTAGT 1 chr2R:13864940-13865060 ( 47) GTAGTAGT 1 chrX:10015078-10015198 ( 97) GTAGTAGT 1 chrX:10014877-10014997 ( 73) GTAGTAGT 1 chrX:5300096-5300216 ( 59) GTAGTAGT 1 chr3L:10857509-10857629 ( 55) GTAGCAGA 1 chr3L:11553564-11553684 ( 88) GTAGCAGA 1 chr3R:31134151-31134271 ( 59) GCAGCAGA 1 chr3L:18204152-18204272 ( 49) GCAGCAGT 1 chr2R:12019921-12020041 ( 83) GCAGCAGT 1 chr4:406942-407062 ( 103) GTAGTGGT 1 chr3R:30248760-30248880 ( 74) GTAGTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTAGW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 1.5e+003 -1117 -1117 258 -1117 -1117 -28 -1117 136 157 -1117 -1117 -1117 -1117 -1117 258 -1117 -1117 46 -1117 121 144 -1117 -94 -1117 -1117 -1117 258 -1117 75 -1117 -1117 37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTAGW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.130435 0.000000 0.869565 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.217391 0.000000 0.782609 0.913043 0.000000 0.086957 0.000000 0.000000 0.000000 1.000000 0.000000 0.565217 0.000000 0.000000 0.434783 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGTAGW MEME-4 regular expression -------------------------------------------------------------------------------- GTAG[TC]AG[AT] -------------------------------------------------------------------------------- Time 26.31 secs. ******************************************************************************** ******************************************************************************** MOTIF SCTCCCCC MEME-5 width = 8 sites = 2 llr = 27 E-value = 7.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCTCCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5a:aaaaa probability G 5::::::: matrix T ::a::::: bits 2.7 * ***** 2.4 * ***** 2.1 * ***** 1.9 * ***** Relative 1.6 ******** Entropy 1.3 ******** (19.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCTCCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:14377085-14377205 87 1.71e-06 tatctcattc gctccccc acaacctaag chr3R:30249013-30249133 102 1.71e-06 TTGACTCAAA CCTCCCCC GTTCTTTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14377085-14377205 1.7e-06 86_[+5]_26 chr3R:30249013-30249133 1.7e-06 101_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCTCCCCC width=8 seqs=2 chr2L:14377085-14377205 ( 87) GCTCCCCC 1 chr3R:30249013-30249133 ( 102) CCTCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 7.7e+003 -765 165 157 -765 -765 265 -765 -765 -765 -765 -765 156 -765 265 -765 -765 -765 265 -765 -765 -765 265 -765 -765 -765 265 -765 -765 -765 265 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.7e+003 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCCCC MEME-5 regular expression -------------------------------------------------------------------------------- [CG]CTCCCCC -------------------------------------------------------------------------------- Time 32.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30248760-30248880 5.95e-02 120 chr3L:5276659-5276779 5.32e-05 39_[+1(1.46e-06)]_23_[+3(5.97e-05)]_\ 42 chr3R:19796974-19797094 2.01e-03 63_[+2(2.02e-05)]_49 chr3L:18234198-18234318 1.87e-05 33_[+3(8.27e-06)]_14_[+1(9.32e-06)]_\ 57 chr2R:12019921-12020041 4.11e-09 4_[+3(4.02e-06)]_62_[+2(5.17e-06)]_\ [+4(9.79e-05)]_7_[+1(3.01e-06)]_15 chr2R:22243336-22243456 9.04e-01 120 chrX:5300096-5300216 1.98e-01 1_[+4(4.08e-05)]_1_[+4(4.08e-05)]_1_\ [+4(4.08e-05)]_1_[+4(4.08e-05)]_1_[+4(4.08e-05)]_1_[+4(4.08e-05)]_1_\ [+4(4.08e-05)]_1_[+4(4.08e-05)]_24_[+4(5.03e-05)]_1_[+4(6.94e-05)]_7 chrX:709634-709754 4.53e-02 120 chr3L:18186365-18186485 8.37e-02 94_[+4(2.04e-05)]_18 chr2R:10798696-10798816 8.44e-05 65_[+2(3.08e-06)]_10_[+1(1.87e-05)]_\ 29 chr3L:11553770-11553890 7.76e-01 120 chr2R:22243541-22243661 9.62e-01 120 chr3R:9516471-9516591 5.00e-04 71_[+2(5.17e-06)]_27_[+1(8.56e-05)]_\ 6 chrX:10014877-10014997 1.96e-01 12_[+4(4.08e-05)]_1_[+4(4.08e-05)]_\ 10_[+4(4.08e-05)]_19_[+4(4.08e-05)]_1_[+4(4.08e-05)]_1_[+4(5.03e-05)]_28 chr2L:11014153-11014273 1.07e-03 69_[+1(9.32e-06)]_27_[+2(2.02e-05)]_\ 8 chr2R:18878176-18878296 4.99e-01 120 chr3L:11553564-11553684 1.17e-02 76_[+4(6.94e-05)]_3_[+4(5.03e-05)]_\ 25 chrX:11382727-11382847 7.92e-01 120 chrX:10015078-10015198 1.34e-01 87_[+4(5.03e-05)]_1_[+4(4.08e-05)]_\ 16 chrX:11402194-11402314 9.52e-01 120 chr2L:4647560-4647680 5.70e-01 120 chr4:482810-482930 8.31e-01 120 chr2R:17079166-17079286 2.52e-04 6_[+4(2.04e-05)]_8_[+1(1.24e-05)]_\ 90 chr3L:18186573-18186693 9.07e-01 120 chr3L:10857509-10857629 5.78e-02 54_[+4(5.03e-05)]_58 chr2L:14409822-14409942 1.35e-02 47_[+4(2.04e-05)]_11_[+4(2.04e-05)]_\ 46 chr2R:19406638-19406758 5.78e-03 64_[+4(2.04e-05)]_11_[+4(4.08e-05)]_\ 12_[+4(2.04e-05)]_9 chr2R:12025325-12025445 4.68e-01 120 chr2R:13864940-13865060 1.01e-01 43_[+4(4.08e-05)]_69 chr3R:12548345-12548465 2.78e-02 28_[+4(4.08e-05)]_84 chr3L:4021402-4021522 6.91e-02 120 chr3R:10582696-10582816 2.29e-02 75_[+4(2.04e-05)]_5_[+4(6.94e-05)]_\ 24 chr2L:16842044-16842164 8.34e-01 120 chr3L:5276862-5276982 1.36e-04 58_[+3(7.74e-05)]_4_[+1(1.46e-06)]_\ 42 chr2L:14490516-14490636 1.55e-05 11_[+2(5.20e-05)]_14_[+3(1.69e-05)]_\ 11_[+2(1.17e-05)]_60 chr3R:19797185-19797305 5.50e-04 9_[+1(5.79e-05)]_63_[+2(3.08e-06)]_\ 32 chrX:13656945-13657065 2.62e-01 120 chrX:11382936-11383056 8.10e-01 120 chr3R:28858301-28858421 2.36e-03 20_[+1(5.79e-05)]_1_[+1(4.56e-06)]_\ 83 chr2L:4647792-4647912 8.47e-01 120 chr3L:5630351-5630471 1.82e-01 35_[+3(2.92e-05)]_77 chr3R:30249013-30249133 1.29e-04 77_[+1(4.39e-05)]_16_[+5(1.71e-06)]_\ 11 chr3L:7953048-7953168 3.52e-01 120 chr3R:21326929-21327049 2.77e-01 70_[+4(4.08e-05)]_20_[+4(4.08e-05)]_\ 14 chr3L:3188743-3188863 3.81e-03 38_[+4(2.04e-05)]_31_[+4(2.04e-05)]_\ 35 chr2L:2785410-2785530 4.46e-02 20_[+4(4.08e-05)]_31_[+4(4.08e-05)]_\ 3_[+4(2.04e-05)]_[+4(4.08e-05)]_34 chr3R:10636157-10636277 6.58e-01 120 chr2L:19058991-19059111 6.47e-01 120 chr3L:21047118-21047238 9.98e-01 120 chr2R:22661318-22661438 9.02e-01 120 chr3L:745656-745776 9.99e-01 120 chr3L:14816895-14817015 6.65e-02 106_[+1(4.39e-05)]_6 chr2R:12020123-12020243 9.18e-01 120 chr2L:4133157-4133277 3.73e-03 43_[+1(4.39e-05)]_69 chr3R:5216281-5216401 1.07e-06 37_[+4(2.04e-05)]_67_[+3(4.02e-06)] chr3R:14873633-14873753 1.94e-04 56_[+4(2.04e-05)]_10_[+1(4.39e-05)]_\ 8_[+4(2.04e-05)]_22 chr3L:15693190-15693310 5.51e-01 120 chr2R:22270841-22270961 2.21e-01 120 chr2R:21168797-21168917 7.73e-01 120 chrX:13764532-13764652 7.14e-01 120 chrX:18525076-18525196 8.45e-01 120 chr2R:22886220-22886340 7.23e-01 120 chr3L:10737096-10737216 1.69e-06 4_[+3(1.69e-05)]_25_[+2(3.08e-06)]_\ 42_[+3(4.02e-06)]_25 chr3L:19338426-19338546 4.84e-01 120 chr3R:27988636-27988756 1.92e-01 120 chrX:20644103-20644223 7.53e-01 120 chr3R:11872816-11872936 8.44e-01 120 chr3R:14002160-14002280 8.41e-01 120 chr3R:21824182-21824302 8.27e-01 120 chr2R:15351356-15351476 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40_[+2(2.89e-05)]_72 chr2L:14519407-14519527 9.93e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************