******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4328.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:18881748-18881868 1.0000 120 chr2L:14537966-14538086 1.0000 120 chr2R:16802770-16802890 1.0000 120 chr2L:14537128-14537248 1.0000 120 chr2L:14497754-14497874 1.0000 120 chr3L:22175699-22175819 1.0000 120 chr2L:14445073-14445193 1.0000 120 chrX:2219388-2219508 1.0000 120 chr2L:14558917-14559037 1.0000 120 chr3R:14331644-14331764 1.0000 120 chr2L:14376686-14376806 1.0000 120 chr3L:5751653-5751773 1.0000 120 chr3L:14654904-14655024 1.0000 120 chr3R:18114915-18115035 1.0000 120 chr3R:23718677-23718797 1.0000 120 chr2R:21923366-21923486 1.0000 120 chr3R:30092064-30092184 1.0000 120 chr3L:9814710-9814830 1.0000 120 chr3L:133525-133645 1.0000 120 chr2R:21195030-21195150 1.0000 120 chr3L:5971377-5971497 1.0000 120 chr3R:15124609-15124729 1.0000 120 chrX:2295183-2295303 1.0000 120 chr2L:14497953-14498073 1.0000 120 chr3L:1393632-1393752 1.0000 120 chrX:13108554-13108674 1.0000 120 chr3L:2089993-2090113 1.0000 120 chr3L:22159537-22159657 1.0000 120 chr2R:16802969-16803089 1.0000 120 chrX:13749958-13750078 1.0000 120 chr3L:20441117-20441237 1.0000 120 chr2R:10314895-10315015 1.0000 120 chr3L:2765132-2765252 1.0000 120 chr2R:9429522-9429642 1.0000 120 chr3L:22160924-22161044 1.0000 120 chr2R:9565860-9565980 1.0000 120 chr3L:10165362-10165482 1.0000 120 chr3L:11512631-11512751 1.0000 120 chr3L:19019506-19019626 1.0000 120 chr3L:21112077-21112197 1.0000 120 chr3L:6707117-6707237 1.0000 120 chr3R:21567380-21567500 1.0000 120 chr2L:14501523-14501643 1.0000 120 chr3L:21452213-21452333 1.0000 120 chr3L:8683932-8684052 1.0000 120 chr2L:5064092-5064212 1.0000 120 chr2R:7879143-7879263 1.0000 120 chr3R:20168090-20168210 1.0000 120 chr2L:14399328-14399448 1.0000 120 chr2R:11045843-11045963 1.0000 120 chr3L:12564457-12564577 1.0000 120 chr2L:22144298-22144418 1.0000 120 chr3L:19992062-19992182 1.0000 120 chr2L:6291838-6291958 1.0000 120 chr2R:10480998-10481118 1.0000 120 chr2R:24963461-24963581 1.0000 120 chr3R:21629904-21630024 1.0000 120 chr2R:11275422-11275542 1.0000 120 chr3R:4999653-4999773 1.0000 120 chr3R:14332868-14332988 1.0000 120 chr3L:9425789-9425909 1.0000 120 chrX:6039543-6039663 1.0000 120 chr3R:4999856-4999976 1.0000 120 chrX:6220274-6220394 1.0000 120 chr4:1219191-1219311 1.0000 120 chr2L:7940784-7940904 1.0000 120 chr2L:20016598-20016718 1.0000 120 chr3L:9465705-9465825 1.0000 120 chr2R:11276412-11276532 1.0000 120 chrX:6720101-6720221 1.0000 120 chr3R:16655359-16655479 1.0000 120 chr3L:4254630-4254750 1.0000 120 chr2L:10986327-10986447 1.0000 120 chr3L:8750209-8750329 1.0000 120 chrX:12947772-12947892 1.0000 120 chr3L:15597182-15597302 1.0000 120 chr2L:20970029-20970149 1.0000 120 chr2R:14031215-14031335 1.0000 120 chr3L:18881948-18882068 1.0000 120 chr2R:8094457-8094577 1.0000 120 chrX:5664334-5664454 1.0000 120 chr3R:14386743-14386863 1.0000 120 chr3L:6697389-6697509 1.0000 120 chrX:17294270-17294390 1.0000 120 chr2L:3323552-3323672 1.0000 120 chr2R:16338391-16338511 1.0000 120 chr2L:7572928-7573048 1.0000 120 chr2R:23635885-23636005 1.0000 120 chr3R:23927651-23927771 1.0000 120 chr3L:2647788-2647908 1.0000 120 chr3L:20006828-20006948 1.0000 120 chr3L:19239219-19239339 1.0000 120 chr2L:19421720-19421840 1.0000 120 chr2L:856125-856245 1.0000 120 chrX:18004381-18004501 1.0000 120 chr3L:19048306-19048426 1.0000 120 chr3L:8347496-8347616 1.0000 120 chr3R:4975289-4975409 1.0000 120 chr3R:20555906-20556026 1.0000 120 chr2R:10734310-10734430 1.0000 120 chrX:18238038-18238158 1.0000 120 chrX:11885477-11885597 1.0000 120 chr3R:27946669-27946789 1.0000 120 chr4:167690-167810 1.0000 120 chr3R:10048909-10049029 1.0000 120 chr2R:11364658-11364778 1.0000 120 chr2R:6535226-6535346 1.0000 120 chr3R:14568961-14569081 1.0000 120 chr2R:7054303-7054423 1.0000 120 chr3L:21036466-21036586 1.0000 120 chr2L:14456884-14457004 1.0000 120 chrX:12547717-12547837 1.0000 120 chr2L:19817277-19817397 1.0000 120 chr3R:30198912-30199032 1.0000 120 chr3R:4995789-4995909 1.0000 120 chr3R:15243306-15243426 1.0000 120 chr2R:22542252-22542372 1.0000 120 chr3R:31600030-31600150 1.0000 120 chr2R:17714580-17714700 1.0000 120 chr3L:15591336-15591456 1.0000 120 chr2R:9542758-9542878 1.0000 120 chr3L:1742827-1742947 1.0000 120 chr3L:8060556-8060676 1.0000 120 chr2L:3058369-3058489 1.0000 120 chrX:6694484-6694604 1.0000 120 chr2L:5096961-5097081 1.0000 120 chr2L:6082941-6083061 1.0000 120 chr3R:23941783-23941903 1.0000 120 chr3L:19091831-19091951 1.0000 120 chr2R:12008866-12008986 1.0000 120 chr3L:14031203-14031323 1.0000 120 chrX:13570387-13570507 1.0000 120 chr2L:2861558-2861678 1.0000 120 chr3R:5746768-5746888 1.0000 120 chrX:5970343-5970463 1.0000 120 chr4:482688-482808 1.0000 120 chr3L:8741291-8741411 1.0000 120 chr2L:1723232-1723352 1.0000 120 chr3L:15530805-15530925 1.0000 120 chr2R:7451140-7451260 1.0000 120 chr3L:329341-329461 1.0000 120 chr2L:1987095-1987215 1.0000 120 chr2L:10249802-10249922 1.0000 120 chrX:18657576-18657696 1.0000 120 chr3L:7860751-7860871 1.0000 120 chr2R:13937220-13937340 1.0000 120 chr3R:14012962-14013082 1.0000 120 chr3R:22526657-22526777 1.0000 120 chr3R:10852257-10852377 1.0000 120 chr3L:19191978-19192098 1.0000 120 chr3L:18020994-18021114 1.0000 120 chr3L:17531546-17531666 1.0000 120 chr3L:15548907-15549027 1.0000 120 chr2L:3086898-3087018 1.0000 120 chr2L:14490197-14490317 1.0000 120 chr2R:12035174-12035294 1.0000 120 chr4:444064-444184 1.0000 120 chr2L:20077934-20078054 1.0000 120 chr3R:23817657-23817777 1.0000 120 chrX:15746416-15746536 1.0000 120 chr3R:9344612-9344732 1.0000 120 chr3R:10186205-10186325 1.0000 120 chr2R:10123684-10123804 1.0000 120 chr2R:13723381-13723501 1.0000 120 chr2R:24964489-24964609 1.0000 120 chr2R:14574208-14574328 1.0000 120 chr2R:13430073-13430193 1.0000 120 chr2L:3100830-3100950 1.0000 120 chr3L:6609300-6609420 1.0000 120 chr3R:9675074-9675194 1.0000 120 chr3R:11758871-11758991 1.0000 120 chrX:17856911-17857031 1.0000 120 chrX:6866111-6866231 1.0000 120 chrX:15497828-15497948 1.0000 120 chr2R:14175330-14175450 1.0000 120 chr3R:31221409-31221529 1.0000 120 chr4:1199348-1199468 1.0000 120 chr3L:7837118-7837238 1.0000 120 chr3R:23947129-23947249 1.0000 120 chr3R:5367665-5367785 1.0000 120 chr2R:11176250-11176370 1.0000 120 chr3L:3078910-3079030 1.0000 120 chr2R:18539977-18540097 1.0000 120 chrX:11816644-11816764 1.0000 120 chr2L:10231189-10231309 1.0000 120 chr2R:16097050-16097170 1.0000 120 chr3L:16602764-16602884 1.0000 120 chr2R:19449824-19449944 1.0000 120 chr3L:1690855-1690975 1.0000 120 chr2L:2864732-2864852 1.0000 120 chr2R:18835081-18835201 1.0000 120 chr3L:4221448-4221568 1.0000 120 chr2L:3228820-3228940 1.0000 120 chr3R:24318628-24318748 1.0000 120 chr2R:13560891-13561011 1.0000 120 chr3L:10679835-10679955 1.0000 120 chr3L:8058389-8058509 1.0000 120 chr3R:29748929-29749049 1.0000 120 chr2R:5782735-5782855 1.0000 120 chr3L:17047860-17047980 1.0000 120 chr3L:19845613-19845733 1.0000 120 chr2L:2873455-2873575 1.0000 120 chr3L:16149628-16149748 1.0000 120 chrX:18082874-18082994 1.0000 120 chr3L:21205115-21205235 1.0000 120 chr2R:17719354-17719474 1.0000 120 chr2L:5327045-5327165 1.0000 120 chr3R:20252983-20253103 1.0000 120 chr2L:12463175-12463295 1.0000 120 chr3L:12668186-12668306 1.0000 120 chr2R:9549944-9550064 1.0000 120 chr2R:10059018-10059138 1.0000 120 chr3L:6216108-6216228 1.0000 120 chr2R:15134275-15134395 1.0000 120 chr2L:11445658-11445778 1.0000 120 chrX:21322693-21322813 1.0000 120 chr3L:16129306-16129426 1.0000 120 chr3R:15213690-15213810 1.0000 120 chr2L:13206320-13206440 1.0000 120 chrX:15043864-15043984 1.0000 120 chr3R:23725890-23726010 1.0000 120 chrX:13755259-13755379 1.0000 120 chr2R:13008262-13008382 1.0000 120 chr3R:21373558-21373678 1.0000 120 chr3R:14657200-14657320 1.0000 120 chr3R:30103185-30103305 1.0000 120 chr2R:13576366-13576486 1.0000 120 chr4:226026-226146 1.0000 120 chr3L:3149307-3149427 1.0000 120 chrX:6853566-6853686 1.0000 120 chr2R:11970489-11970609 1.0000 120 chr2R:7457765-7457885 1.0000 120 chr3R:20263826-20263946 1.0000 120 chr2L:5196845-5196965 1.0000 120 chr3R:23445391-23445511 1.0000 120 chr3R:7892595-7892715 1.0000 120 chr2L:1094874-1094994 1.0000 120 chr2R:6707732-6707852 1.0000 120 chr2R:8649238-8649358 1.0000 120 chr2R:6464952-6465072 1.0000 120 chr2R:19413317-19413437 1.0000 120 chr3L:332189-332309 1.0000 120 chr2L:9494812-9494932 1.0000 120 chr3L:13903375-13903495 1.0000 120 chr3R:16011770-16011890 1.0000 120 chr2L:294993-295113 1.0000 120 chr3R:5413004-5413124 1.0000 120 chr3R:18168436-18168556 1.0000 120 chrX:15860645-15860765 1.0000 120 chr3R:9494390-9494510 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG4328/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4328.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.295 C 0.211 G 0.203 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.295 C 0.211 G 0.203 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RTKTRTKT MEME-1 width = 8 sites = 66 llr = 518 E-value = 1.8e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTKTRTKT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6:::4::: pos.-specific C :::::::: probability G 4:5:6:6: matrix T :a5a:a4a bits 2.3 2.1 1.8 * * * * 1.6 * * * * Relative 1.4 * * * * Entropy 1.1 * ***** (11.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTTGTGT consensus G G A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTKTRTKT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16149628-16149748 31 1.75e-05 ctacggctat ATGTGTGT ACATATGCGT chr3R:5367665-5367785 89 1.75e-05 TGACAAGAAC ATGTGTGT ATACAGGCGT chr2L:22144298-22144418 113 1.75e-05 GAACgtattt atgtgtgt chrX:6853566-6853686 62 2.95e-05 gtgactgagt gtgtgtgt gtgAGCAGAG chr3L:3149307-3149427 82 2.95e-05 GTGTTCCAgt gtgtgtgt gtgttgtgtT chr2L:11445658-11445778 57 2.95e-05 GCGTACGTGT GTGTGTGT GTGTTATTAC chr3L:12668186-12668306 31 2.95e-05 GTGCATGTGC GTGTGTGT TGGTTTGGAG chr3L:18020994-18021114 91 2.95e-05 TTTTGAGAGT GTGTGTGT GAGCGACACA chr2L:1723232-1723352 82 2.95e-05 GCCGGCCATT GTGTGTGT AGGGTGCAGG chr2L:14456884-14457004 62 2.95e-05 CTCtgtgtgt gtgtgtgt gtgtgtCAAA chr2R:16802969-16803089 68 2.95e-05 GAATAATTTT GTGTGTGT CAAAGGAATT chr3L:2089993-2090113 34 2.95e-05 GAAGCCCGCG GTGTGTGT GCGCTAGATG chr2L:12463175-12463295 40 5.44e-05 TTGTTTCTGT ATTTGTGT TTTGAATCAA chr3R:24318628-24318748 72 5.44e-05 GTTATCAAGA ATTTGTGT AGTAGCTATT chr2R:14031215-14031335 88 5.44e-05 TTGTGCAAAT ATTTGTGT CATTAAACAA chr2R:11045843-11045963 72 5.44e-05 GTTCATAATT ATTTGTGT TTATTTTTAA chr2R:16802770-16802890 18 5.44e-05 ATCATCATAA ATTTGTGT TGCCTTTACC chr2L:5196845-5196965 6 7.16e-05 GCTGT GTTTGTGT CATAAATTAT chr2L:19817277-19817397 69 7.16e-05 AAGGAAATAG GTTTGTGT CTTTGCTCGA chr2R:11276412-11276532 56 7.16e-05 TAAAATAGCA GTTTGTGT GGCACACATT chr2L:5064092-5064212 68 7.16e-05 TTTTCGGCTT GTTTGTGT TTTCTGATTC chr2R:9565860-9565980 22 7.16e-05 ATTTATCGAC GTTTGTGT TTACTTAACC chr4:226026-226146 76 1.22e-04 gtatgtacat atgtatgt atataAGCCT chrX:18082874-18082994 28 1.22e-04 TGATATACAT ATGTATGT ACATAGCTAT chrX:17856911-17857031 103 1.22e-04 TCATTAGCGT ATGTATGT ACTACATATA chr3L:15530805-15530925 4 1.22e-04 tgt atgtatgt acatatatat chr2L:2861558-2861678 44 1.22e-04 GATCAACATT ATGTGTTT GCACTCTCGG chr2L:6082941-6083061 16 1.22e-04 CTGAATGTAC ATGTATGT ATAGCCCGAA chr3L:15591336-15591456 50 1.22e-04 CAAGCAGTGG ATGTGTTT GGTTTTATAG chr3R:31600030-31600150 34 1.22e-04 GCATACATAT ATGTATGT AGAATGGGCG chr3L:20006828-20006948 88 1.22e-04 TCGCCTATGT ATGTATGT AAATGCTGCA chrX:6720101-6720221 42 1.22e-04 atatgtacat atgtatgt acatatgtac chr2R:11275422-11275542 45 1.22e-04 AAATCTTAAA ATGTGTTT CTAATTTTCG chrX:13749958-13750078 53 1.22e-04 ACAACAATGT ATGTATGT ACGTATAGCC chrX:2295183-2295303 61 1.22e-04 atATGAGCAT ATGTATGT ACATAAGTCA chr2L:10231189-10231309 107 1.56e-04 ATTTAGACGA GTGTATGT AATACA chr2L:14490197-14490317 98 1.56e-04 TGGTTGAAGA GTGTGTTT AAGTGTTGAG chr2L:14399328-14399448 104 1.56e-04 ATCTCTATCT GTGTATGT CGACTGCGT chr3R:5413004-5413124 112 2.28e-04 AAATGTCTTA ATTTGTTT T chr3L:6216108-6216228 110 2.28e-04 GGTTTCAGAG ATTTGTTT ACT chr3L:21036466-21036586 1 2.28e-04 . ATTTGTTT AGTTCTGCTG chr2R:23635885-23636005 19 2.28e-04 ACCTGTTATA ATTTGTTT GGCTTCTTGT chr3L:4254630-4254750 84 2.28e-04 AATATCGTTA ATTTGTTT ACTAGTGATA chr2R:10480998-10481118 49 2.28e-04 TTACCCTGCG ATTTATGT TGTATTTTTA chr2R:21923366-21923486 111 2.28e-04 ATTAATGAGC ATTTGTTT TC chr3R:18114915-18115035 43 2.28e-04 ACACGACGAA ATTTGTTT CTCTAGCCGT chr2L:14376686-14376806 99 2.28e-04 TAATAAAAAT ATTTGTTT TCTCTACACT chr2R:13560891-13561011 103 2.78e-04 ATGTACATTT GTTTGTTT TGATTGTGCA chr2R:19449824-19449944 104 2.78e-04 GATGGTCGTT GTTTATGT CGCGTAAAC chr2R:14175330-14175450 66 2.78e-04 tttttttgtt gtttgttt cttttttttt chr2R:22542252-22542372 29 2.78e-04 CTTCCATTTC GTTTGTTT GCTTTGTCAT chr3R:20555906-20556026 113 2.78e-04 atatgtacct gtttatgt chr2R:8649238-8649358 37 3.14e-04 CTGTTAACAT ATGTATTT ACATTGGTAG chr3L:18881948-18882068 43 3.14e-04 CAAAATGCGA ATGTATTT TCAAAACTAA chr3L:21112077-21112197 89 3.14e-04 GCATGCCAAA ATGTATTT TTTTCCCCCC chr2R:7457765-7457885 8 3.91e-04 CATTCCT ATTTATTT AGGTGCCATT chr3L:17047860-17047980 26 3.91e-04 TTTATGGAAT ATTTATTT ATAAATGCAT chr3R:29748929-29749049 10 3.91e-04 tattaaata atttattt taattatGGA chr2R:12035174-12035294 16 3.91e-04 ACAAACGAAT ATTTATTT CCAATCTTTC chr3R:23927651-23927771 93 3.91e-04 AAAATTACTC ATTTATTT ATTACATAAT chr3L:12564457-12564577 63 3.91e-04 TGCTTATTTA ATTTATTT TTTTTTTCAG chr2L:14558917-14559037 110 3.91e-04 TCTCTGACAC ATTTATTT GTT chr3L:10679835-10679955 27 4.26e-04 TGTATTTACT GTTTATTT AGTTGGCAAC chr2L:2864732-2864852 98 4.26e-04 AGAATTCAAT GTTTATTT AAATGACACC chr3R:16655359-16655479 36 4.26e-04 TACAGAAAGT GTTTATTT TCGTTCCATT chr3L:19019506-19019626 60 4.26e-04 CCGCTTTGAT GTTTATTT GACAGTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTKTRTKT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16149628-16149748 1.7e-05 30_[+1]_82 chr3R:5367665-5367785 1.7e-05 88_[+1]_24 chr2L:22144298-22144418 1.7e-05 112_[+1] chrX:6853566-6853686 2.9e-05 61_[+1]_51 chr3L:3149307-3149427 2.9e-05 81_[+1]_31 chr2L:11445658-11445778 2.9e-05 56_[+1]_56 chr3L:12668186-12668306 2.9e-05 30_[+1]_82 chr3L:18020994-18021114 2.9e-05 90_[+1]_22 chr2L:1723232-1723352 2.9e-05 81_[+1]_31 chr2L:14456884-14457004 2.9e-05 61_[+1]_51 chr2R:16802969-16803089 2.9e-05 67_[+1]_45 chr3L:2089993-2090113 2.9e-05 33_[+1]_79 chr2L:12463175-12463295 5.4e-05 39_[+1]_73 chr3R:24318628-24318748 5.4e-05 71_[+1]_41 chr2R:14031215-14031335 5.4e-05 87_[+1]_25 chr2R:11045843-11045963 5.4e-05 71_[+1]_41 chr2R:16802770-16802890 5.4e-05 17_[+1]_95 chr2L:5196845-5196965 7.2e-05 5_[+1]_107 chr2L:19817277-19817397 7.2e-05 68_[+1]_44 chr2R:11276412-11276532 7.2e-05 55_[+1]_57 chr2L:5064092-5064212 7.2e-05 67_[+1]_45 chr2R:9565860-9565980 7.2e-05 21_[+1]_91 chr4:226026-226146 0.00012 75_[+1]_37 chrX:18082874-18082994 0.00012 27_[+1]_85 chrX:17856911-17857031 0.00012 102_[+1]_10 chr3L:15530805-15530925 0.00012 3_[+1]_109 chr2L:2861558-2861678 0.00012 43_[+1]_69 chr2L:6082941-6083061 0.00012 15_[+1]_97 chr3L:15591336-15591456 0.00012 49_[+1]_63 chr3R:31600030-31600150 0.00012 33_[+1]_79 chr3L:20006828-20006948 0.00012 87_[+1]_25 chrX:6720101-6720221 0.00012 41_[+1]_71 chr2R:11275422-11275542 0.00012 44_[+1]_68 chrX:13749958-13750078 0.00012 52_[+1]_60 chrX:2295183-2295303 0.00012 60_[+1]_52 chr2L:10231189-10231309 0.00016 106_[+1]_6 chr2L:14490197-14490317 0.00016 97_[+1]_15 chr2L:14399328-14399448 0.00016 103_[+1]_9 chr3R:5413004-5413124 0.00023 111_[+1]_1 chr3L:6216108-6216228 0.00023 109_[+1]_3 chr3L:21036466-21036586 0.00023 [+1]_112 chr2R:23635885-23636005 0.00023 18_[+1]_94 chr3L:4254630-4254750 0.00023 83_[+1]_29 chr2R:10480998-10481118 0.00023 48_[+1]_64 chr2R:21923366-21923486 0.00023 110_[+1]_2 chr3R:18114915-18115035 0.00023 42_[+1]_70 chr2L:14376686-14376806 0.00023 98_[+1]_14 chr2R:13560891-13561011 0.00028 102_[+1]_10 chr2R:19449824-19449944 0.00028 103_[+1]_9 chr2R:14175330-14175450 0.00028 65_[+1]_47 chr2R:22542252-22542372 0.00028 28_[+1]_84 chr3R:20555906-20556026 0.00028 112_[+1] chr2R:8649238-8649358 0.00031 36_[+1]_76 chr3L:18881948-18882068 0.00031 42_[+1]_70 chr3L:21112077-21112197 0.00031 88_[+1]_24 chr2R:7457765-7457885 0.00039 7_[+1]_105 chr3L:17047860-17047980 0.00039 25_[+1]_87 chr3R:29748929-29749049 0.00039 9_[+1]_103 chr2R:12035174-12035294 0.00039 15_[+1]_97 chr3R:23927651-23927771 0.00039 92_[+1]_20 chr3L:12564457-12564577 0.00039 62_[+1]_50 chr2L:14558917-14559037 0.00039 109_[+1]_3 chr3L:10679835-10679955 0.00043 26_[+1]_86 chr2L:2864732-2864852 0.00043 97_[+1]_15 chr3R:16655359-16655479 0.00043 35_[+1]_77 chr3L:19019506-19019626 0.00043 59_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTKTRTKT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTKTRTKT width=8 seqs=66 chr3L:16149628-16149748 ( 31) ATGTGTGT 1 chr3R:5367665-5367785 ( 89) ATGTGTGT 1 chr2L:22144298-22144418 ( 113) ATGTGTGT 1 chrX:6853566-6853686 ( 62) GTGTGTGT 1 chr3L:3149307-3149427 ( 82) GTGTGTGT 1 chr2L:11445658-11445778 ( 57) GTGTGTGT 1 chr3L:12668186-12668306 ( 31) GTGTGTGT 1 chr3L:18020994-18021114 ( 91) GTGTGTGT 1 chr2L:1723232-1723352 ( 82) GTGTGTGT 1 chr2L:14456884-14457004 ( 62) GTGTGTGT 1 chr2R:16802969-16803089 ( 68) GTGTGTGT 1 chr3L:2089993-2090113 ( 34) GTGTGTGT 1 chr2L:12463175-12463295 ( 40) ATTTGTGT 1 chr3R:24318628-24318748 ( 72) ATTTGTGT 1 chr2R:14031215-14031335 ( 88) ATTTGTGT 1 chr2R:11045843-11045963 ( 72) ATTTGTGT 1 chr2R:16802770-16802890 ( 18) ATTTGTGT 1 chr2L:5196845-5196965 ( 6) GTTTGTGT 1 chr2L:19817277-19817397 ( 69) GTTTGTGT 1 chr2R:11276412-11276532 ( 56) GTTTGTGT 1 chr2L:5064092-5064212 ( 68) GTTTGTGT 1 chr2R:9565860-9565980 ( 22) GTTTGTGT 1 chr4:226026-226146 ( 76) ATGTATGT 1 chrX:18082874-18082994 ( 28) ATGTATGT 1 chrX:17856911-17857031 ( 103) ATGTATGT 1 chr3L:15530805-15530925 ( 4) ATGTATGT 1 chr2L:2861558-2861678 ( 44) ATGTGTTT 1 chr2L:6082941-6083061 ( 16) ATGTATGT 1 chr3L:15591336-15591456 ( 50) ATGTGTTT 1 chr3R:31600030-31600150 ( 34) ATGTATGT 1 chr3L:20006828-20006948 ( 88) ATGTATGT 1 chrX:6720101-6720221 ( 42) ATGTATGT 1 chr2R:11275422-11275542 ( 45) ATGTGTTT 1 chrX:13749958-13750078 ( 53) ATGTATGT 1 chrX:2295183-2295303 ( 61) ATGTATGT 1 chr2L:10231189-10231309 ( 107) GTGTATGT 1 chr2L:14490197-14490317 ( 98) GTGTGTTT 1 chr2L:14399328-14399448 ( 104) GTGTATGT 1 chr3R:5413004-5413124 ( 112) ATTTGTTT 1 chr3L:6216108-6216228 ( 110) ATTTGTTT 1 chr3L:21036466-21036586 ( 1) ATTTGTTT 1 chr2R:23635885-23636005 ( 19) ATTTGTTT 1 chr3L:4254630-4254750 ( 84) ATTTGTTT 1 chr2R:10480998-10481118 ( 49) ATTTATGT 1 chr2R:21923366-21923486 ( 111) ATTTGTTT 1 chr3R:18114915-18115035 ( 43) ATTTGTTT 1 chr2L:14376686-14376806 ( 99) ATTTGTTT 1 chr2R:13560891-13561011 ( 103) GTTTGTTT 1 chr2R:19449824-19449944 ( 104) GTTTATGT 1 chr2R:14175330-14175450 ( 66) GTTTGTTT 1 chr2R:22542252-22542372 ( 29) GTTTGTTT 1 chr3R:20555906-20556026 ( 113) GTTTATGT 1 chr2R:8649238-8649358 ( 37) ATGTATTT 1 chr3L:18881948-18882068 ( 43) ATGTATTT 1 chr3L:21112077-21112197 ( 89) ATGTATTT 1 chr2R:7457765-7457885 ( 8) ATTTATTT 1 chr3L:17047860-17047980 ( 26) ATTTATTT 1 chr3R:29748929-29749049 ( 10) ATTTATTT 1 chr2R:12035174-12035294 ( 16) ATTTATTT 1 chr3R:23927651-23927771 ( 93) ATTTATTT 1 chr3L:12564457-12564577 ( 63) ATTTATTT 1 chr2L:14558917-14559037 ( 110) ATTTATTT 1 chr3L:10679835-10679955 ( 27) GTTTATTT 1 chr2L:2864732-2864852 ( 98) GTTTATTT 1 chr3R:16655359-16655479 ( 36) GTTTATTT 1 chr3L:19019506-19019626 ( 60) GTTTATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTKTRTKT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4922 E= 1.8e-009 104 -1269 95 -1269 -1269 -1269 -1269 178 -1269 -1269 121 87 -1269 -1269 -1269 178 57 -1269 146 -1269 -1269 -1269 -1269 178 -1269 -1269 146 60 -1269 -1269 -1269 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTKTRTKT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 1.8e-009 0.606061 0.000000 0.393939 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.469697 0.530303 0.000000 0.000000 0.000000 1.000000 0.439394 0.000000 0.560606 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.560606 0.439394 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTKTRTKT MEME-1 regular expression -------------------------------------------------------------------------------- [AG]T[TG]T[GA]T[GT]T -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TATGTACA MEME-2 width = 8 sites = 33 llr = 301 E-value = 4.6e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATGTACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9:::a:9 pos.-specific C ::::::9: probability G :::8:::1 matrix T a1a2a:1: bits 2.3 2.1 1.8 * * * * 1.6 * ***** Relative 1.4 * ****** Entropy 1.1 ******** (13.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATGTACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:226026-226146 67 2.68e-05 TTGacatatg tatgtaca tatgtatgta chr3R:23725890-23726010 33 2.68e-05 ACTCGTATGT TATGTACA TTCTTCATAC chr2R:10059018-10059138 34 2.68e-05 CATATGTACC TATGTACA TACTTTTGTC chr3L:19845613-19845733 30 2.68e-05 GAGTATTAGA TATGTACA TATGTGGCCC chr3L:8058389-8058509 52 2.68e-05 AACAGATACA TATGTACA TAATGAACTC chr2R:16097050-16097170 44 2.68e-05 AATTGTATAT TATGTACA TGTGAGTTTT chr3R:10186205-10186325 39 2.68e-05 GCAATGACAA TATGTACA AGTACACGCT chr3L:19191978-19192098 34 2.68e-05 GCACTGCCTT TATGTACA GTAAAAATTC chr2L:10249802-10249922 43 2.68e-05 CCTGTGTAAA TATGTACA TACACACGAT chrX:13570387-13570507 27 2.68e-05 GTGCCCACCA TATGTACA AATGTATATA chr4:167690-167810 59 2.68e-05 GGTCCAACAG TATGTACA CTTTGAACTG chr3R:27946669-27946789 91 2.68e-05 GTGGTGTACA TATGTACA TATTTACATA chr3R:20555906-20556026 88 2.68e-05 agtgtatata tatgtaca tacatatata chr3L:20006828-20006948 64 2.68e-05 ACCGATGTGC TATGTACA TATGCATCGC chr3L:15597182-15597302 27 2.68e-05 TTGAAGTACA TATGTACA TAAGGAAACT chr3R:16655359-16655479 22 2.68e-05 CATATGTACA TATGTACA GAAAGTGTTT chrX:6720101-6720221 33 2.68e-05 TAAGCAAata tatgtaca tatgtatgta chr3L:19992062-19992182 88 2.68e-05 TGTGCGTACA TATGTACA TACGCACCTG chr2L:22144298-22144418 4 2.68e-05 ACA TATGTACA TATAAATAGG chrX:2295183-2295303 42 2.68e-05 acataagtca tatgtaca tatATGAGCA chr2R:6707732-6707852 66 6.51e-05 GCTTAGTCCG TATTTACA CAACAATGGC chr3L:3078910-3079030 81 6.51e-05 CGTGTGTACA TATTTACA CACAATTTAC chr3R:11758871-11758991 47 6.51e-05 ATATACATGT TATTTACA CGTTCCCTTG chrX:18238038-18238158 73 6.51e-05 GGTGTGACAA TATTTACA ATGTCTTGTT chr3L:2647788-2647908 33 6.51e-05 GGTTCGCCTA TATTTACA AATGATAAAC chr4:1199348-1199468 4 8.36e-05 ACG TATGTACG CATGTGCGCA chr3R:14012962-14013082 103 8.36e-05 TATACGTAAA TATGTACG CTGCTCTCTT chr3L:6216108-6216228 77 1.10e-04 CGTTAATATC TTTGTACA CAGGCGCACA chr2L:10986327-10986447 29 1.10e-04 AAGACTCAAC TTTGTACA TTGAAAACAA chr2L:3323552-3323672 17 1.28e-04 TCTCATGCTT TGTGTACA ATCTAATCAA chr2L:13206320-13206440 9 1.84e-04 ATAAGATC TATGTATA TGGCATACTT chrX:18082874-18082994 3 1.84e-04 CA TATGTATA TGATTGTTGA chr3L:15530805-15530925 21 1.84e-04 tacatatata tatgtgca gtatgtGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:226026-226146 2.7e-05 66_[+2]_46 chr3R:23725890-23726010 2.7e-05 32_[+2]_80 chr2R:10059018-10059138 2.7e-05 33_[+2]_79 chr3L:19845613-19845733 2.7e-05 29_[+2]_83 chr3L:8058389-8058509 2.7e-05 51_[+2]_61 chr2R:16097050-16097170 2.7e-05 43_[+2]_69 chr3R:10186205-10186325 2.7e-05 38_[+2]_74 chr3L:19191978-19192098 2.7e-05 33_[+2]_79 chr2L:10249802-10249922 2.7e-05 42_[+2]_70 chrX:13570387-13570507 2.7e-05 26_[+2]_86 chr4:167690-167810 2.7e-05 58_[+2]_54 chr3R:27946669-27946789 2.7e-05 90_[+2]_22 chr3R:20555906-20556026 2.7e-05 87_[+2]_25 chr3L:20006828-20006948 2.7e-05 63_[+2]_49 chr3L:15597182-15597302 2.7e-05 26_[+2]_86 chr3R:16655359-16655479 2.7e-05 21_[+2]_91 chrX:6720101-6720221 2.7e-05 32_[+2]_80 chr3L:19992062-19992182 2.7e-05 87_[+2]_25 chr2L:22144298-22144418 2.7e-05 3_[+2]_109 chrX:2295183-2295303 2.7e-05 41_[+2]_71 chr2R:6707732-6707852 6.5e-05 65_[+2]_47 chr3L:3078910-3079030 6.5e-05 80_[+2]_32 chr3R:11758871-11758991 6.5e-05 46_[+2]_66 chrX:18238038-18238158 6.5e-05 72_[+2]_40 chr3L:2647788-2647908 6.5e-05 32_[+2]_80 chr4:1199348-1199468 8.4e-05 3_[+2]_109 chr3R:14012962-14013082 8.4e-05 102_[+2]_10 chr3L:6216108-6216228 0.00011 76_[+2]_36 chr2L:10986327-10986447 0.00011 28_[+2]_84 chr2L:3323552-3323672 0.00013 16_[+2]_96 chr2L:13206320-13206440 0.00018 8_[+2]_104 chrX:18082874-18082994 0.00018 2_[+2]_110 chr3L:15530805-15530925 0.00018 20_[+2]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATGTACA width=8 seqs=33 chr4:226026-226146 ( 67) TATGTACA 1 chr3R:23725890-23726010 ( 33) TATGTACA 1 chr2R:10059018-10059138 ( 34) TATGTACA 1 chr3L:19845613-19845733 ( 30) TATGTACA 1 chr3L:8058389-8058509 ( 52) TATGTACA 1 chr2R:16097050-16097170 ( 44) TATGTACA 1 chr3R:10186205-10186325 ( 39) TATGTACA 1 chr3L:19191978-19192098 ( 34) TATGTACA 1 chr2L:10249802-10249922 ( 43) TATGTACA 1 chrX:13570387-13570507 ( 27) TATGTACA 1 chr4:167690-167810 ( 59) TATGTACA 1 chr3R:27946669-27946789 ( 91) TATGTACA 1 chr3R:20555906-20556026 ( 88) TATGTACA 1 chr3L:20006828-20006948 ( 64) TATGTACA 1 chr3L:15597182-15597302 ( 27) TATGTACA 1 chr3R:16655359-16655479 ( 22) TATGTACA 1 chrX:6720101-6720221 ( 33) TATGTACA 1 chr3L:19992062-19992182 ( 88) TATGTACA 1 chr2L:22144298-22144418 ( 4) TATGTACA 1 chrX:2295183-2295303 ( 42) TATGTACA 1 chr2R:6707732-6707852 ( 66) TATTTACA 1 chr3L:3078910-3079030 ( 81) TATTTACA 1 chr3R:11758871-11758991 ( 47) TATTTACA 1 chrX:18238038-18238158 ( 73) TATTTACA 1 chr3L:2647788-2647908 ( 33) TATTTACA 1 chr4:1199348-1199468 ( 4) TATGTACG 1 chr3R:14012962-14013082 ( 103) TATGTACG 1 chr3L:6216108-6216228 ( 77) TTTGTACA 1 chr2L:10986327-10986447 ( 29) TTTGTACA 1 chr2L:3323552-3323672 ( 17) TGTGTACA 1 chr2L:13206320-13206440 ( 9) TATGTATA 1 chrX:18082874-18082994 ( 3) TATGTATA 1 chr3L:15530805-15530925 ( 21) TATGTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 4.6e-006 -1169 -1169 -1169 178 162 -1169 -274 -226 -1169 -1169 -1169 178 -1169 -1169 206 -94 -1169 -1169 -1169 178 172 -1169 -274 -1169 -1169 215 -1169 -226 167 -1169 -174 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 4.6e-006 0.000000 0.000000 0.000000 1.000000 0.909091 0.000000 0.030303 0.060606 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.848485 0.151515 0.000000 0.000000 0.000000 1.000000 0.969697 0.000000 0.030303 0.000000 0.000000 0.939394 0.000000 0.060606 0.939394 0.000000 0.060606 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-2 regular expression -------------------------------------------------------------------------------- TATGTACA -------------------------------------------------------------------------------- Time 13.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGSGG MEME-3 width = 8 sites = 19 llr = 185 E-value = 6.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGSGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::2:2:2 pos.-specific C :3:1:4:: probability G a7a7a5a8 matrix T :::::::: bits 2.3 * * * * 2.1 * * * * 1.8 * * * * 1.6 * * * ** Relative 1.4 *** * ** Entropy 1.1 ***** ** (14.1 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGGG consensus C A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24964489-24964609 5 2.88e-06 ACGG GGGGGGGG GATCAATTTA chr2R:14031215-14031335 31 2.88e-06 AACGGGGGAG GGGGGGGG GTAAGACAGG chr3L:7837118-7837238 17 5.88e-06 TGTTTTAGCA GGGGGCGG ATGGGCGGAA chr2L:3058369-3058489 66 5.88e-06 TGGATCGATT GGGGGCGG GGGCCATCGA chr3R:31600030-31600150 61 5.88e-06 GGTTCGCAGA GGgggcgg acagacgaac chr2L:5064092-5064212 92 8.88e-06 ATTCTGATTC GCGGGGGG TTGAGAGAAC chr2R:9565860-9565980 78 8.88e-06 AATGAAAGGG GCGGGGGG TGGCTATATG chr3L:1690855-1690975 111 1.20e-05 CGGGGATGGC GCGGGCGG AT chr3R:22526657-22526777 112 1.62e-05 AAGGGGGGTA GGGGGAGG T chr3R:21629904-21630024 85 1.62e-05 GGTGTTTGAC GGGGGAGG GAGGCAGCCA chr3R:23718677-23718797 2 1.62e-05 T GGGGGAGG TGGTGGCATA chr3L:15548907-15549027 12 2.04e-05 ACGTGGATGT GGGAGGGG GTGTTGGGCC chr3L:6697389-6697509 9 2.89e-05 AGTGCATT GGGGGGGA AAGAATGGGT chr3R:16011770-16011890 110 3.76e-05 ACAAATAGCA GGGGGCGA GGG chr2L:14537966-14538086 49 3.76e-05 CACAGTCCAA GGGGGCGA TGGACCGCAG chr3R:21567380-21567500 68 4.20e-05 GTAGAAACTT GCGAGGGG ACATAAATTT chr3L:9814710-9814830 2 4.20e-05 C GCGAGGGG TGCGGCAGTA chrX:6853566-6853686 113 4.95e-05 AAGTGGGCGT GGGCGGGG chrX:5664334-5664454 43 4.95e-05 TTCAACGGGA GCGAGCGG AAGTGCGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24964489-24964609 2.9e-06 4_[+3]_108 chr2R:14031215-14031335 2.9e-06 30_[+3]_82 chr3L:7837118-7837238 5.9e-06 16_[+3]_96 chr2L:3058369-3058489 5.9e-06 65_[+3]_47 chr3R:31600030-31600150 5.9e-06 60_[+3]_52 chr2L:5064092-5064212 8.9e-06 91_[+3]_21 chr2R:9565860-9565980 8.9e-06 77_[+3]_35 chr3L:1690855-1690975 1.2e-05 110_[+3]_2 chr3R:22526657-22526777 1.6e-05 111_[+3]_1 chr3R:21629904-21630024 1.6e-05 84_[+3]_28 chr3R:23718677-23718797 1.6e-05 1_[+3]_111 chr3L:15548907-15549027 2e-05 11_[+3]_101 chr3L:6697389-6697509 2.9e-05 8_[+3]_104 chr3R:16011770-16011890 3.8e-05 109_[+3]_3 chr2L:14537966-14538086 3.8e-05 48_[+3]_64 chr3R:21567380-21567500 4.2e-05 67_[+3]_45 chr3L:9814710-9814830 4.2e-05 1_[+3]_111 chrX:6853566-6853686 5e-05 112_[+3] chrX:5664334-5664454 5e-05 42_[+3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGSGG width=8 seqs=19 chr2R:24964489-24964609 ( 5) GGGGGGGG 1 chr2R:14031215-14031335 ( 31) GGGGGGGG 1 chr3L:7837118-7837238 ( 17) GGGGGCGG 1 chr2L:3058369-3058489 ( 66) GGGGGCGG 1 chr3R:31600030-31600150 ( 61) GGGGGCGG 1 chr2L:5064092-5064212 ( 92) GCGGGGGG 1 chr2R:9565860-9565980 ( 78) GCGGGGGG 1 chr3L:1690855-1690975 ( 111) GCGGGCGG 1 chr3R:22526657-22526777 ( 112) GGGGGAGG 1 chr3R:21629904-21630024 ( 85) GGGGGAGG 1 chr3R:23718677-23718797 ( 2) GGGGGAGG 1 chr3L:15548907-15549027 ( 12) GGGAGGGG 1 chr3L:6697389-6697509 ( 9) GGGGGGGA 1 chr3R:16011770-16011890 ( 110) GGGGGCGA 1 chr2L:14537966-14538086 ( 49) GGGGGCGA 1 chr3R:21567380-21567500 ( 68) GCGAGGGG 1 chr3L:9814710-9814830 ( 2) GCGAGGGG 1 chrX:6853566-6853686 ( 113) GGGCGGGG 1 chrX:5664334-5664454 ( 43) GCGAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 6.2e+000 -1089 -1089 230 -1089 -1089 58 175 -1089 -1089 -1089 230 -1089 -49 -200 186 -1089 -1089 -1089 230 -1089 -90 80 122 -1089 -1089 -1089 230 -1089 -90 -1089 205 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 6.2e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.315789 0.684211 0.000000 0.000000 0.000000 1.000000 0.000000 0.210526 0.052632 0.736842 0.000000 0.000000 0.000000 1.000000 0.000000 0.157895 0.368421 0.473684 0.000000 0.000000 0.000000 1.000000 0.000000 0.157895 0.000000 0.842105 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGSGG MEME-3 regular expression -------------------------------------------------------------------------------- G[GC]G[GA]G[GC]GG -------------------------------------------------------------------------------- Time 19.92 secs. ******************************************************************************** ******************************************************************************** MOTIF AACAACAR MEME-4 width = 8 sites = 42 llr = 346 E-value = 9.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAACAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa1aa2a7 pos.-specific C ::9::6:: probability G :::::::3 matrix T :::::1:: bits 2.3 2.1 1.8 * ** * 1.6 ***** * Relative 1.4 ***** * Entropy 1.1 ***** * (11.9 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAACAA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9494390-9494510 39 2.93e-05 CTTCAGTCTA AACAACAA AGTGAACGTT chr3R:18168436-18168556 40 2.93e-05 CCTTCCTTGC AACAACAA AACTTATGAG chr3L:13903375-13903495 33 2.93e-05 GTCCCTACAC AACAACAA AATTTTGAAT chr3R:23445391-23445511 45 2.93e-05 gcaaacagcg aacaacaa acagagaaac chr3L:3149307-3149427 53 2.93e-05 GAGCAGCAAC AACAACAA GTATGGCTGT chr2L:12463175-12463295 6 2.93e-05 AAGTC AACAACAA AAACAATGCA chrX:15497828-15497948 89 2.93e-05 CCAGCGGTAC AACAACAA TAGCGacaac chr2R:14574208-14574328 21 2.93e-05 AAAACGCACA AACAACAA ATTGTGGCTA chr3R:10186205-10186325 14 2.93e-05 AATGGCCCGT AACAACAA AAACATGGCA chr2R:13937220-13937340 37 2.93e-05 TTATCTGTAT AACAACAA CTCGACTTTA chrX:5970343-5970463 12 2.93e-05 AAAAGACAAC AACAACAA CGGCACGGCG chr2L:6082941-6083061 93 2.93e-05 GCGCAGAGAT AACAACAA CGATTGTTAG chrX:13749958-13750078 42 2.93e-05 TAAGATTGTA AACAACAA TGTATGTATG chr3L:18881748-18881868 89 2.93e-05 CTGCGAAAGA AACAACAA CCGCAATGGC chr2R:6464952-6465072 54 4.95e-05 tacaaatgta aacaacag cataaaagta chr3L:1690855-1690975 71 4.95e-05 CATTTAGACA AACAACAG CATACTCAGT chr3L:15548907-15549027 62 4.95e-05 AAAAAACTGA AACAACAG AATATGAAAT chr2R:9542758-9542878 98 4.95e-05 TTGGATTACC AACAACAG GCTCTCGGAA chrX:13755259-13755379 59 9.06e-05 GTAGGATTGG AACAAAAA GGATTGAAGA chr3L:16602764-16602884 109 9.06e-05 CTCAACAATA AACAAAAA AACA chr2L:1723232-1723352 104 9.06e-05 TGCAGGTGAA AACAAAAA TAAATTCAG chr3R:5746768-5746888 27 9.06e-05 CAGAGCATGC AACAAAAA AATACACAAC chrX:5664334-5664454 23 9.06e-05 CTGGAGCAAA AACAAAAA CATTCAACGG chr3L:22175699-22175819 93 9.06e-05 TCTCGTGGGG AACAAAAA ATTAGAACAA chr3R:20263826-20263946 96 1.19e-04 ATCTATAGTA AACAAAAG CGCGTAAAAG chr2R:13576366-13576486 110 1.19e-04 ACCCCGAACC AACAAAAG GCC chr3L:19239219-19239339 46 1.19e-04 TTATGGCCAA AACAAAAG AGATGGTCGA chr2R:11275422-11275542 1 1.19e-04 . AACAAAAG AAGTGAACGC chr2L:1094874-1094994 97 1.59e-04 CTATTTGCAC AACAATAA AGTCAATTTA chr2R:11176250-11176370 91 1.59e-04 CGCCTTTTGA AACAATAA ACCAGTAATT chr2R:6535226-6535346 46 1.59e-04 GAAATGAAAT AACAATAA ATAAAATGGC chrX:17294270-17294390 15 1.59e-04 catcagcagc aacaataa aaagcataca chrX:15043864-15043984 63 2.28e-04 GTTATAGCTT AACAATAG TTGTAGGCGC chr2L:20077934-20078054 6 2.28e-04 CCGAA AAAAACAA GGAAAAGAAG chr3L:15591336-15591456 35 2.28e-04 CGGCAGCAGA AAAAACAA GCAGTGGATG chr3R:14568961-14569081 103 2.28e-04 GATACTTTGC AACAATAG TTCCCCGAAA chr3L:332189-332309 107 2.56e-04 GCCAAGAATA AAAAACAG ACTAAC chr3L:10679835-10679955 64 2.56e-04 GAGCACGAAG AAAAACAG CTGTTAAACA chr2R:10734310-10734430 80 2.56e-04 GAAATAAATA AAAAACAG ACGCGTCCCC chr2R:9429522-9429642 86 2.56e-04 TGGTCAAAAT AAAAACAG AAACAGAATG chr3R:5367665-5367785 62 2.77e-04 GCTGTGTAGC ACCAACAA CTCAGCTGTT chr3R:9675074-9675194 64 2.77e-04 TAACCACCAA ACCAACAA ACATTGTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9494390-9494510 2.9e-05 38_[+4]_74 chr3R:18168436-18168556 2.9e-05 39_[+4]_73 chr3L:13903375-13903495 2.9e-05 32_[+4]_80 chr3R:23445391-23445511 2.9e-05 44_[+4]_68 chr3L:3149307-3149427 2.9e-05 52_[+4]_60 chr2L:12463175-12463295 2.9e-05 5_[+4]_107 chrX:15497828-15497948 2.9e-05 88_[+4]_24 chr2R:14574208-14574328 2.9e-05 20_[+4]_92 chr3R:10186205-10186325 2.9e-05 13_[+4]_99 chr2R:13937220-13937340 2.9e-05 36_[+4]_76 chrX:5970343-5970463 2.9e-05 11_[+4]_101 chr2L:6082941-6083061 2.9e-05 92_[+4]_20 chrX:13749958-13750078 2.9e-05 41_[+4]_71 chr3L:18881748-18881868 2.9e-05 88_[+4]_24 chr2R:6464952-6465072 5e-05 53_[+4]_59 chr3L:1690855-1690975 5e-05 70_[+4]_42 chr3L:15548907-15549027 5e-05 61_[+4]_51 chr2R:9542758-9542878 5e-05 97_[+4]_15 chrX:13755259-13755379 9.1e-05 58_[+4]_54 chr3L:16602764-16602884 9.1e-05 108_[+4]_4 chr2L:1723232-1723352 9.1e-05 103_[+4]_9 chr3R:5746768-5746888 9.1e-05 26_[+4]_86 chrX:5664334-5664454 9.1e-05 22_[+4]_90 chr3L:22175699-22175819 9.1e-05 92_[+4]_20 chr3R:20263826-20263946 0.00012 95_[+4]_17 chr2R:13576366-13576486 0.00012 109_[+4]_3 chr3L:19239219-19239339 0.00012 45_[+4]_67 chr2R:11275422-11275542 0.00012 [+4]_112 chr2L:1094874-1094994 0.00016 96_[+4]_16 chr2R:11176250-11176370 0.00016 90_[+4]_22 chr2R:6535226-6535346 0.00016 45_[+4]_67 chrX:17294270-17294390 0.00016 14_[+4]_98 chrX:15043864-15043984 0.00023 62_[+4]_50 chr2L:20077934-20078054 0.00023 5_[+4]_107 chr3L:15591336-15591456 0.00023 34_[+4]_78 chr3R:14568961-14569081 0.00023 102_[+4]_10 chr3L:332189-332309 0.00026 106_[+4]_6 chr3L:10679835-10679955 0.00026 63_[+4]_49 chr2R:10734310-10734430 0.00026 79_[+4]_33 chr2R:9429522-9429642 0.00026 85_[+4]_27 chr3R:5367665-5367785 0.00028 61_[+4]_51 chr3R:9675074-9675194 0.00028 63_[+4]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAACAR width=8 seqs=42 chr3R:9494390-9494510 ( 39) AACAACAA 1 chr3R:18168436-18168556 ( 40) AACAACAA 1 chr3L:13903375-13903495 ( 33) AACAACAA 1 chr3R:23445391-23445511 ( 45) AACAACAA 1 chr3L:3149307-3149427 ( 53) AACAACAA 1 chr2L:12463175-12463295 ( 6) AACAACAA 1 chrX:15497828-15497948 ( 89) AACAACAA 1 chr2R:14574208-14574328 ( 21) AACAACAA 1 chr3R:10186205-10186325 ( 14) AACAACAA 1 chr2R:13937220-13937340 ( 37) AACAACAA 1 chrX:5970343-5970463 ( 12) AACAACAA 1 chr2L:6082941-6083061 ( 93) AACAACAA 1 chrX:13749958-13750078 ( 42) AACAACAA 1 chr3L:18881748-18881868 ( 89) AACAACAA 1 chr2R:6464952-6465072 ( 54) AACAACAG 1 chr3L:1690855-1690975 ( 71) AACAACAG 1 chr3L:15548907-15549027 ( 62) AACAACAG 1 chr2R:9542758-9542878 ( 98) AACAACAG 1 chrX:13755259-13755379 ( 59) AACAAAAA 1 chr3L:16602764-16602884 ( 109) AACAAAAA 1 chr2L:1723232-1723352 ( 104) AACAAAAA 1 chr3R:5746768-5746888 ( 27) AACAAAAA 1 chrX:5664334-5664454 ( 23) AACAAAAA 1 chr3L:22175699-22175819 ( 93) AACAAAAA 1 chr3R:20263826-20263946 ( 96) AACAAAAG 1 chr2R:13576366-13576486 ( 110) AACAAAAG 1 chr3L:19239219-19239339 ( 46) AACAAAAG 1 chr2R:11275422-11275542 ( 1) AACAAAAG 1 chr2L:1094874-1094994 ( 97) AACAATAA 1 chr2R:11176250-11176370 ( 91) AACAATAA 1 chr2R:6535226-6535346 ( 46) AACAATAA 1 chrX:17294270-17294390 ( 15) AACAATAA 1 chrX:15043864-15043984 ( 63) AACAATAG 1 chr2L:20077934-20078054 ( 6) AAAAACAA 1 chr3L:15591336-15591456 ( 35) AAAAACAA 1 chr3R:14568961-14569081 ( 103) AACAATAG 1 chr3L:332189-332309 ( 107) AAAAACAG 1 chr3L:10679835-10679955 ( 64) AAAAACAG 1 chr2R:10734310-10734430 ( 80) AAAAACAG 1 chr2R:9429522-9429642 ( 86) AAAAACAG 1 chr3R:5367665-5367785 ( 62) ACCAACAA 1 chr3R:9675074-9675194 ( 64) ACCAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 9.5e+001 176 -1204 -1204 -1204 169 -215 -1204 -1204 -105 202 -1204 -1204 176 -1204 -1204 -1204 176 -1204 -1204 -1204 -31 155 -1204 -102 176 -1204 -1204 -1204 117 -1204 71 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 9.5e+001 1.000000 0.000000 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.238095 0.619048 0.000000 0.142857 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAACAR MEME-4 regular expression -------------------------------------------------------------------------------- AACAA[CA]A[AG] -------------------------------------------------------------------------------- Time 26.04 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTGGTK MEME-5 width = 8 sites = 10 llr = 106 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTGGTK MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::3::::: probability G aa7:aa:6 matrix T :::a::a4 bits 2.3 ** ** 2.1 ** ** 1.8 ** **** 1.6 ** **** Relative 1.4 ******* Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGTGGTG consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGTK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7837118-7837238 48 5.89e-06 GTTAGGCGGT GGGTGGTG TGTGGTGGGT chr3L:8741291-8741411 18 5.89e-06 ATATGGTATG GGGTGGTG GGCACAACAT chr2L:7940784-7940904 96 5.89e-06 CAGAGGAAGT GGGTGGTG GGGCGGAAAC chr2R:16802969-16803089 11 5.89e-06 TTGGTTCAGT GGGTGGTG GTGGCTGTGG chr2R:17719354-17719474 83 1.43e-05 ATGGACATAT GGGTGGTT GGATAGGGGC chr4:444064-444184 55 1.43e-05 ATTTTTTCTT GGGTGGTT GTCGTCCCCG chr2R:11045843-11045963 57 1.43e-05 AGCGCGTTGA GGGTGGTT CATAATTATT chr3L:6609300-6609420 18 2.04e-05 GTTGCCAGAC GGCTGGTG TTTTGCCATC chr3R:4999856-4999976 5 2.04e-05 CTTC GGCTGGTG TGGGGGAAAG chr3L:2647788-2647908 19 2.91e-05 CCCGACTAGG GGCTGGTT CGCCTATATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGTK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7837118-7837238 5.9e-06 47_[+5]_65 chr3L:8741291-8741411 5.9e-06 17_[+5]_95 chr2L:7940784-7940904 5.9e-06 95_[+5]_17 chr2R:16802969-16803089 5.9e-06 10_[+5]_102 chr2R:17719354-17719474 1.4e-05 82_[+5]_30 chr4:444064-444184 1.4e-05 54_[+5]_58 chr2R:11045843-11045963 1.4e-05 56_[+5]_56 chr3L:6609300-6609420 2e-05 17_[+5]_95 chr3R:4999856-4999976 2e-05 4_[+5]_108 chr3L:2647788-2647908 2.9e-05 18_[+5]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGTK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTGGTK width=8 seqs=10 chr3L:7837118-7837238 ( 48) GGGTGGTG 1 chr3L:8741291-8741411 ( 18) GGGTGGTG 1 chr2L:7940784-7940904 ( 96) GGGTGGTG 1 chr2R:16802969-16803089 ( 11) GGGTGGTG 1 chr2R:17719354-17719474 ( 83) GGGTGGTT 1 chr4:444064-444184 ( 55) GGGTGGTT 1 chr2R:11045843-11045963 ( 57) GGGTGGTT 1 chr3L:6609300-6609420 ( 18) GGCTGGTG 1 chr3R:4999856-4999976 ( 5) GGCTGGTG 1 chr3L:2647788-2647908 ( 19) GGCTGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGTK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 2.8e+003 -997 -997 230 -997 -997 -997 230 -997 -997 51 178 -997 -997 -997 -997 178 -997 -997 230 -997 -997 -997 230 -997 -997 -997 -997 178 -997 -997 156 46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGTK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGGTK MEME-5 regular expression -------------------------------------------------------------------------------- GG[GC]TGGT[GT] -------------------------------------------------------------------------------- Time 32.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18881748-18881868 9.75e-02 88_[+4(2.93e-05)]_24 chr2L:14537966-14538086 4.72e-03 48_[+3(3.76e-05)]_64 chr2R:16802770-16802890 1.95e-02 17_[+1(5.44e-05)]_95 chr2L:14537128-14537248 9.46e-01 120 chr2L:14497754-14497874 7.56e-01 120 chr3L:22175699-22175819 1.81e-01 92_[+4(9.06e-05)]_20 chr2L:14445073-14445193 1.24e-01 120 chrX:2219388-2219508 9.55e-01 120 chr2L:14558917-14559037 2.58e-01 120 chr3R:14331644-14331764 5.92e-01 120 chr2L:14376686-14376806 2.55e-01 120 chr3L:5751653-5751773 1.52e-01 120 chr3L:14654904-14655024 2.28e-01 120 chr3R:18114915-18115035 4.08e-01 120 chr3R:23718677-23718797 7.50e-03 1_[+3(1.62e-05)]_111 chr2R:21923366-21923486 5.79e-01 120 chr3R:30092064-30092184 1.86e-01 120 chr3L:9814710-9814830 5.74e-02 1_[+3(4.20e-05)]_111 chr3L:133525-133645 4.41e-02 120 chr2R:21195030-21195150 3.26e-01 120 chr3L:5971377-5971497 4.52e-01 120 chr3R:15124609-15124729 8.99e-01 120 chrX:2295183-2295303 1.93e-02 [+2(2.68e-05)]_10_[+2(2.68e-05)]_\ [+2(2.68e-05)]_7_[+2(2.68e-05)]_14_[+2(2.68e-05)]_7_[+2(8.36e-05)]_34 chr2L:14497953-14498073 4.72e-02 120 chr3L:1393632-1393752 4.85e-01 120 chrX:13108554-13108674 5.47e-01 120 chr3L:2089993-2090113 4.48e-03 33_[+1(2.95e-05)]_79 chr3L:22159537-22159657 5.53e-01 120 chr2R:16802969-16803089 1.76e-04 10_[+5(5.89e-06)]_49_[+1(2.95e-05)]_\ 45 chrX:13749958-13750078 1.95e-05 41_[+4(2.93e-05)]_6_[+2(8.36e-05)]_\ 57 chr3L:20441117-20441237 9.87e-01 120 chr2R:10314895-10315015 5.79e-01 120 chr3L:2765132-2765252 1.57e-01 120 chr2R:9429522-9429642 5.31e-01 120 chr3L:22160924-22161044 8.15e-01 120 chr2R:9565860-9565980 2.06e-05 21_[+1(7.16e-05)]_48_[+3(8.88e-06)]_\ 35 chr3L:10165362-10165482 3.28e-01 120 chr3L:11512631-11512751 1.00e+00 120 chr3L:19019506-19019626 3.08e-01 120 chr3L:21112077-21112197 6.72e-01 120 chr3L:6707117-6707237 3.56e-01 120 chr3R:21567380-21567500 2.21e-01 67_[+3(4.20e-05)]_45 chr2L:14501523-14501643 8.93e-01 120 chr3L:21452213-21452333 2.89e-01 120 chr3L:8683932-8684052 8.70e-01 120 chr2L:5064092-5064212 2.52e-04 67_[+1(7.16e-05)]_16_[+3(8.88e-06)]_\ 21 chr2R:7879143-7879263 8.43e-01 120 chr3R:20168090-20168210 9.52e-01 120 chr2L:14399328-14399448 1.10e-01 120 chr2R:11045843-11045963 1.22e-03 56_[+5(1.43e-05)]_7_[+1(5.44e-05)]_\ 41 chr3L:12564457-12564577 3.76e-01 120 chr2L:22144298-22144418 1.79e-03 3_[+2(2.68e-05)]_26_[+2(8.36e-05)]_\ 25_[+2(6.51e-05)]_34_[+1(1.75e-05)] chr3L:19992062-19992182 2.00e-02 87_[+2(2.68e-05)]_16_[+2(2.68e-05)]_\ 1 chr2L:6291838-6291958 5.19e-01 120 chr2R:10480998-10481118 2.21e-01 120 chr2R:24963461-24963581 4.56e-01 120 chr3R:21629904-21630024 1.10e-02 68_[+3(2.04e-05)]_8_[+3(1.62e-05)]_\ 28 chr2R:11275422-11275542 4.50e-02 120 chr3R:4999653-4999773 3.72e-01 120 chr3R:14332868-14332988 3.86e-01 120 chr3L:9425789-9425909 8.99e-01 120 chrX:6039543-6039663 3.13e-01 120 chr3R:4999856-4999976 2.96e-02 4_[+5(2.04e-05)]_108 chrX:6220274-6220394 9.80e-01 120 chr4:1219191-1219311 9.44e-01 120 chr2L:7940784-7940904 1.34e-02 95_[+5(5.89e-06)]_17 chr2L:20016598-20016718 6.46e-01 120 chr3L:9465705-9465825 9.97e-01 120 chr2R:11276412-11276532 1.16e-01 55_[+1(7.16e-05)]_57 chrX:6720101-6720221 2.49e-02 32_[+2(2.68e-05)]_4_[+2(2.68e-05)]_\ [+2(2.68e-05)]_12_[+2(2.68e-05)]_40 chr3R:16655359-16655479 5.36e-03 13_[+2(2.68e-05)]_[+2(2.68e-05)]_91 chr3L:4254630-4254750 1.21e-01 120 chr2L:10986327-10986447 1.66e-01 120 chr3L:8750209-8750329 9.43e-01 120 chrX:12947772-12947892 9.47e-01 120 chr3L:15597182-15597302 5.00e-02 26_[+2(2.68e-05)]_86 chr2L:20970029-20970149 4.90e-01 120 chr2R:14031215-14031335 1.86e-05 29_[+3(2.88e-06)]_50_[+1(5.44e-05)]_\ 25 chr3L:18881948-18882068 3.02e-01 120 chr2R:8094457-8094577 6.39e-01 120 chrX:5664334-5664454 1.06e-02 22_[+4(9.06e-05)]_12_[+3(4.95e-05)]_\ 70 chr3R:14386743-14386863 4.44e-01 120 chr3L:6697389-6697509 4.93e-03 8_[+3(2.89e-05)]_104 chrX:17294270-17294390 2.27e-01 120 chr2L:3323552-3323672 7.94e-02 120 chr2R:16338391-16338511 8.14e-01 120 chr2L:7572928-7573048 9.46e-01 120 chr2R:23635885-23636005 1.56e-01 120 chr3R:23927651-23927771 3.88e-01 120 chr3L:2647788-2647908 1.13e-03 18_[+5(2.91e-05)]_6_[+2(6.51e-05)]_\ 80 chr3L:20006828-20006948 1.40e-02 63_[+2(2.68e-05)]_49 chr3L:19239219-19239339 9.84e-02 120 chr2L:19421720-19421840 8.10e-01 120 chr2L:856125-856245 5.31e-01 120 chrX:18004381-18004501 9.62e-01 120 chr3L:19048306-19048426 8.51e-01 120 chr3L:8347496-8347616 4.04e-01 120 chr3R:4975289-4975409 1.45e-01 120 chr3R:20555906-20556026 3.99e-02 48_[+2(2.68e-05)]_[+2(2.68e-05)]_23_\ [+2(2.68e-05)]_25 chr2R:10734310-10734430 6.09e-02 120 chrX:18238038-18238158 4.74e-02 72_[+2(6.51e-05)]_40 chrX:11885477-11885597 8.68e-01 120 chr3R:27946669-27946789 3.28e-03 90_[+2(2.68e-05)]_[+2(6.51e-05)]_14 chr4:167690-167810 4.12e-02 31_[+2(6.51e-05)]_19_[+2(2.68e-05)]_\ 54 chr3R:10048909-10049029 3.99e-01 120 chr2R:11364658-11364778 1.00e+00 120 chr2R:6535226-6535346 4.34e-02 120 chr3R:14568961-14569081 2.95e-02 120 chr2R:7054303-7054423 8.03e-01 120 chr3L:21036466-21036586 1.29e-01 120 chr2L:14456884-14457004 1.41e-01 55_[+1(2.95e-05)]_[+1(2.95e-05)]_49 chrX:12547717-12547837 9.85e-01 120 chr2L:19817277-19817397 2.47e-02 68_[+1(7.16e-05)]_44 chr3R:30198912-30199032 2.10e-01 120 chr3R:4995789-4995909 3.43e-01 120 chr3R:15243306-15243426 7.10e-01 120 chr2R:22542252-22542372 2.19e-01 120 chr3R:31600030-31600150 2.01e-05 60_[+3(5.88e-06)]_18_[+5(8.96e-05)]_\ 26 chr2R:17714580-17714700 2.48e-01 120 chr3L:15591336-15591456 8.70e-03 120 chr2R:9542758-9542878 4.78e-02 97_[+4(4.95e-05)]_15 chr3L:1742827-1742947 5.95e-01 120 chr3L:8060556-8060676 1.12e-01 120 chr2L:3058369-3058489 2.64e-03 65_[+3(5.88e-06)]_47 chrX:6694484-6694604 9.49e-01 120 chr2L:5096961-5097081 8.46e-01 120 chr2L:6082941-6083061 6.91e-04 92_[+4(2.93e-05)]_20 chr3R:23941783-23941903 4.58e-02 120 chr3L:19091831-19091951 8.45e-01 120 chr2R:12008866-12008986 1.95e-01 120 chr3L:14031203-14031323 8.21e-02 120 chrX:13570387-13570507 5.01e-02 26_[+2(2.68e-05)]_86 chr2L:2861558-2861678 1.00e-01 120 chr3R:5746768-5746888 2.38e-01 26_[+4(9.06e-05)]_86 chrX:5970343-5970463 1.40e-02 8_[+4(2.93e-05)]_104 chr4:482688-482808 7.56e-01 120 chr3L:8741291-8741411 4.77e-02 17_[+5(5.89e-06)]_95 chr2L:1723232-1723352 4.77e-04 81_[+1(2.95e-05)]_14_[+4(9.06e-05)]_\ 9 chr3L:15530805-15530925 8.07e-03 6_[+2(2.68e-05)]_106 chr2R:7451140-7451260 9.80e-02 120 chr3L:329341-329461 3.79e-01 120 chr2L:1987095-1987215 5.91e-01 120 chr2L:10249802-10249922 4.96e-02 42_[+2(2.68e-05)]_70 chrX:18657576-18657696 2.72e-01 120 chr3L:7860751-7860871 5.94e-01 120 chr2R:13937220-13937340 1.10e-01 36_[+4(2.93e-05)]_76 chr3R:14012962-14013082 3.65e-01 102_[+2(8.36e-05)]_10 chr3R:22526657-22526777 2.41e-02 111_[+3(1.62e-05)]_1 chr3R:10852257-10852377 9.98e-01 120 chr3L:19191978-19192098 1.47e-02 33_[+2(2.68e-05)]_79 chr3L:18020994-18021114 3.54e-02 88_[+1(2.95e-05)]_24 chr3L:17531546-17531666 3.03e-01 120 chr3L:15548907-15549027 3.11e-04 11_[+3(2.04e-05)]_42_[+4(4.95e-05)]_\ 51 chr2L:3086898-3087018 1.31e-01 120 chr2L:14490197-14490317 2.22e-04 120 chr2R:12035174-12035294 1.88e-01 120 chr4:444064-444184 1.40e-02 54_[+5(1.43e-05)]_58 chr2L:20077934-20078054 2.14e-01 120 chr3R:23817657-23817777 4.67e-01 120 chrX:15746416-15746536 2.82e-01 120 chr3R:9344612-9344732 9.69e-01 120 chr3R:10186205-10186325 7.75e-03 13_[+4(2.93e-05)]_17_[+2(2.68e-05)]_\ 74 chr2R:10123684-10123804 2.37e-01 120 chr2R:13723381-13723501 2.45e-01 120 chr2R:24964489-24964609 1.57e-02 2_[+3(2.88e-06)]_110 chr2R:14574208-14574328 2.80e-01 20_[+4(2.93e-05)]_92 chr2R:13430073-13430193 9.20e-01 120 chr2L:3100830-3100950 6.34e-01 120 chr3L:6609300-6609420 4.03e-02 17_[+5(2.04e-05)]_95 chr3R:9675074-9675194 7.19e-01 120 chr3R:11758871-11758991 1.85e-01 46_[+2(6.51e-05)]_66 chrX:17856911-17857031 4.80e-02 120 chrX:6866111-6866231 4.39e-01 120 chrX:15497828-15497948 2.14e-01 88_[+4(2.93e-05)]_24 chr2R:14175330-14175450 5.19e-01 120 chr3R:31221409-31221529 8.34e-01 120 chr4:1199348-1199468 1.74e-01 3_[+2(8.36e-05)]_109 chr3L:7837118-7837238 5.38e-05 16_[+3(5.88e-06)]_23_[+5(5.89e-06)]_\ 65 chr3R:23947129-23947249 4.65e-01 120 chr3R:5367665-5367785 7.61e-04 88_[+1(1.75e-05)]_24 chr2R:11176250-11176370 2.99e-01 120 chr3L:3078910-3079030 1.13e-01 80_[+2(6.51e-05)]_32 chr2R:18539977-18540097 4.56e-01 120 chrX:11816644-11816764 1.31e-01 120 chr2L:10231189-10231309 2.13e-01 120 chr2R:16097050-16097170 4.58e-02 43_[+2(2.68e-05)]_69 chr3L:16602764-16602884 4.02e-01 108_[+4(9.06e-05)]_4 chr2R:19449824-19449944 2.00e-01 120 chr3L:1690855-1690975 5.42e-05 70_[+4(4.95e-05)]_32_[+3(1.20e-05)]_\ 2 chr2L:2864732-2864852 1.75e-01 120 chr2R:18835081-18835201 8.67e-01 120 chr3L:4221448-4221568 6.41e-01 120 chr2L:3228820-3228940 2.67e-01 120 chr3R:24318628-24318748 6.50e-02 71_[+1(5.44e-05)]_41 chr2R:13560891-13561011 2.26e-02 120 chr3L:10679835-10679955 8.28e-02 120 chr3L:8058389-8058509 1.74e-01 51_[+2(2.68e-05)]_61 chr3R:29748929-29749049 4.04e-01 120 chr2R:5782735-5782855 5.12e-01 120 chr3L:17047860-17047980 9.75e-02 120 chr3L:19845613-19845733 8.36e-02 29_[+2(2.68e-05)]_83 chr2L:2873455-2873575 8.85e-01 120 chr3L:16149628-16149748 7.70e-04 30_[+1(1.75e-05)]_82 chrX:18082874-18082994 5.93e-03 30_[+2(2.68e-05)]_82 chr3L:21205115-21205235 5.51e-02 120 chr2R:17719354-17719474 5.58e-03 82_[+5(1.43e-05)]_13_[+3(8.29e-05)]_\ 9 chr2L:5327045-5327165 8.83e-01 120 chr3R:20252983-20253103 4.04e-01 120 chr2L:12463175-12463295 3.61e-03 5_[+4(2.93e-05)]_26_[+1(5.44e-05)]_\ 73 chr3L:12668186-12668306 2.05e-02 30_[+1(2.95e-05)]_82 chr2R:9549944-9550064 3.30e-01 120 chr2R:10059018-10059138 5.70e-02 17_[+2(2.68e-05)]_8_[+2(2.68e-05)]_\ 79 chr3L:6216108-6216228 4.14e-02 120 chr2R:15134275-15134395 5.11e-01 120 chr2L:11445658-11445778 3.43e-02 52_[+1(2.95e-05)]_[+1(2.95e-05)]_52 chrX:21322693-21322813 9.66e-01 120 chr3L:16129306-16129426 4.81e-01 120 chr3R:15213690-15213810 2.95e-01 120 chr2L:13206320-13206440 1.70e-01 120 chrX:15043864-15043984 2.92e-01 120 chr3R:23725890-23726010 1.56e-01 32_[+2(2.68e-05)]_48_[+2(2.68e-05)]_\ 24 chrX:13755259-13755379 2.42e-01 58_[+4(9.06e-05)]_54 chr2R:13008262-13008382 8.12e-01 120 chr3R:21373558-21373678 9.35e-01 120 chr3R:14657200-14657320 6.53e-01 120 chr3R:30103185-30103305 6.36e-01 120 chr2R:13576366-13576486 1.53e-01 120 chr4:226026-226146 7.80e-03 66_[+2(2.68e-05)]_46 chr3L:3149307-3149427 2.91e-04 49_[+4(2.93e-05)]_22_[+1(2.95e-05)]_\ 33 chrX:6853566-6853686 4.44e-04 59_[+1(2.95e-05)]_45_[+3(4.95e-05)] chr2R:11970489-11970609 6.79e-01 120 chr2R:7457765-7457885 2.47e-01 120 chr3R:20263826-20263946 1.92e-02 120 chr2L:5196845-5196965 1.67e-01 5_[+1(7.16e-05)]_107 chr3R:23445391-23445511 1.00e-01 44_[+4(2.93e-05)]_7_[+4(2.93e-05)]_\ 53 chr3R:7892595-7892715 2.84e-01 120 chr2L:1094874-1094994 1.26e-01 120 chr2R:6707732-6707852 9.12e-02 65_[+2(6.51e-05)]_47 chr2R:8649238-8649358 4.31e-02 39_[+2(6.51e-05)]_73 chr2R:6464952-6465072 6.90e-02 53_[+4(4.95e-05)]_10_[+4(4.95e-05)]_\ 41 chr2R:19413317-19413437 6.31e-01 120 chr3L:332189-332309 1.77e-01 120 chr2L:9494812-9494932 6.47e-01 120 chr3L:13903375-13903495 4.42e-02 32_[+4(2.93e-05)]_80 chr3R:16011770-16011890 2.83e-02 109_[+3(3.76e-05)]_3 chr2L:294993-295113 3.58e-01 120 chr3R:5413004-5413124 3.08e-01 120 chr3R:18168436-18168556 4.33e-02 39_[+4(2.93e-05)]_73 chrX:15860645-15860765 5.64e-01 120 chr3R:9494390-9494510 1.20e-01 38_[+4(2.93e-05)]_74 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************