******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4318.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:8353362-8353482 1.0000 120 chr2L:20295992-20296112 1.0000 120 chr3L:1200465-1200585 1.0000 120 chr2L:18751467-18751587 1.0000 120 chr3R:15922750-15922870 1.0000 120 chr2R:13768486-13768606 1.0000 120 chr3R:6222260-6222380 1.0000 120 chr2L:20943289-20943409 1.0000 120 chr3R:7992256-7992376 1.0000 120 chr3R:13831218-13831338 1.0000 120 chr2R:12603419-12603539 1.0000 120 chr3R:10150092-10150212 1.0000 120 chr2R:8152612-8152732 1.0000 120 chr3R:25532543-25532663 1.0000 120 chr2R:20024350-20024470 1.0000 120 chr2L:9141074-9141194 1.0000 120 chr2L:18493287-18493407 1.0000 120 chr2L:15321554-15321674 1.0000 120 chr2L:14366712-14366832 1.0000 120 chr3R:24204133-24204253 1.0000 120 chr3R:24777251-24777371 1.0000 120 chr3L:5609645-5609765 1.0000 120 chr3R:5330419-5330539 1.0000 120 chr3L:4509093-4509213 1.0000 120 chr3L:8422416-8422536 1.0000 120 chr3L:14063533-14063653 1.0000 120 chr2R:13750694-13750814 1.0000 120 chr4:831973-832093 1.0000 120 chr3L:10398825-10398945 1.0000 120 chr2R:20196863-20196983 1.0000 120 chr2R:12603622-12603742 1.0000 120 chr2R:12413292-12413412 1.0000 120 chr2L:5730642-5730762 1.0000 120 chr3R:29982167-29982287 1.0000 120 chr2R:15883454-15883574 1.0000 120 chr3L:4302276-4302396 1.0000 120 chr3R:11595707-11595827 1.0000 120 chr2R:13769545-13769665 1.0000 120 chr3L:12060244-12060364 1.0000 120 chr2L:19307781-19307901 1.0000 120 chr3L:3536514-3536634 1.0000 120 chr3L:20562833-20562953 1.0000 120 chr2L:2478465-2478585 1.0000 120 chr3L:15214802-15214922 1.0000 120 chrX:13911273-13911393 1.0000 120 chrX:10953338-10953458 1.0000 120 chr3L:10792082-10792202 1.0000 120 chr3L:10792293-10792413 1.0000 120 chr2R:23016241-23016361 1.0000 120 chr3L:10853683-10853803 1.0000 120 chrX:838140-838260 1.0000 120 chrX:1979850-1979970 1.0000 120 chr3R:30343202-30343322 1.0000 120 chr3L:17586925-17587045 1.0000 120 chr3R:23675850-23675970 1.0000 120 chr2L:16522079-16522199 1.0000 120 chr3R:4471906-4472026 1.0000 120 chrX:7173972-7174092 1.0000 120 chr2L:14318770-14318890 1.0000 120 chr3R:30329994-30330114 1.0000 120 chrX:2220012-2220132 1.0000 120 chr2R:23000880-23001000 1.0000 120 chrX:1198001-1198121 1.0000 120 chrX:6617546-6617666 1.0000 120 chr3R:6215158-6215278 1.0000 120 chrX:9467766-9467886 1.0000 120 chr2L:2185475-2185595 1.0000 120 chr2L:18907579-18907699 1.0000 120 chrX:16859867-16859987 1.0000 120 chrX:17719406-17719526 1.0000 120 chr2R:20047606-20047726 1.0000 120 chr2R:11763105-11763225 1.0000 120 chrX:1979139-1979259 1.0000 120 chr3R:14279741-14279861 1.0000 120 chrX:14214599-14214719 1.0000 120 chr3L:12073243-12073363 1.0000 120 chr2L:13925818-13925938 1.0000 120 chr2R:22727164-22727284 1.0000 120 chr2R:23057018-23057138 1.0000 120 chr3R:14280450-14280570 1.0000 120 chrX:18675893-18676013 1.0000 120 chr3L:19329641-19329761 1.0000 120 chrX:10960096-10960216 1.0000 120 chrX:18542048-18542168 1.0000 120 chrX:6357136-6357256 1.0000 120 chr3R:19996458-19996578 1.0000 120 chr2R:17243803-17243923 1.0000 120 chr2R:16742203-16742323 1.0000 120 chr2R:12984110-12984230 1.0000 120 chr2L:11505329-11505449 1.0000 120 chr3L:2541462-2541582 1.0000 120 chr3R:8948116-8948236 1.0000 120 chr3L:20980628-20980748 1.0000 120 chr3L:10796075-10796195 1.0000 120 chr3L:22106798-22106918 1.0000 120 chr2R:9024682-9024802 1.0000 120 chrX:3045557-3045677 1.0000 120 chr3R:18619675-18619795 1.0000 120 chr3L:12023537-12023657 1.0000 120 chr2R:14920999-14921119 1.0000 120 chr3R:23407980-23408100 1.0000 120 chr2R:15737510-15737630 1.0000 120 chr3R:24976216-24976336 1.0000 120 chr3R:14456589-14456709 1.0000 120 chr2L:3731243-3731363 1.0000 120 chr2L:19235365-19235485 1.0000 120 chr2R:6530770-6530890 1.0000 120 chr3L:6263592-6263712 1.0000 120 chr3R:24886606-24886726 1.0000 120 chr2L:14635097-14635217 1.0000 120 chrX:14922531-14922651 1.0000 120 chr2R:10216587-10216707 1.0000 120 chr2R:7744726-7744846 1.0000 120 chr3R:15541061-15541181 1.0000 120 chr3R:13788327-13788447 1.0000 120 chr3L:8423300-8423420 1.0000 120 chr3L:6331834-6331954 1.0000 120 chr3L:3657008-3657128 1.0000 120 chr3R:8918969-8919089 1.0000 120 chr3R:19808203-19808323 1.0000 120 chr3R:30828637-30828757 1.0000 120 chr2L:18725010-18725130 1.0000 120 chrX:4170614-4170734 1.0000 120 chr3L:18096899-18097019 1.0000 120 chr2R:7905138-7905258 1.0000 120 chr3L:15708671-15708791 1.0000 120 chr3L:21224409-21224529 1.0000 120 chr2L:20940909-20941029 1.0000 120 chr2L:7598926-7599046 1.0000 120 chr2L:7918896-7919016 1.0000 120 chr2R:20055387-20055507 1.0000 120 chr2R:7173222-7173342 1.0000 120 chr3L:756494-756614 1.0000 120 chr3L:20570173-20570293 1.0000 120 chrX:4959046-4959166 1.0000 120 chr3R:8107012-8107132 1.0000 120 chrX:724617-724737 1.0000 120 chr3L:21046213-21046333 1.0000 120 chr2R:14111926-14112046 1.0000 120 chr3L:12109359-12109479 1.0000 120 chrX:8843915-8844035 1.0000 120 chr3R:23416678-23416798 1.0000 120 chr3R:24891076-24891196 1.0000 120 chr3L:1905414-1905534 1.0000 120 chr3L:1392698-1392818 1.0000 120 chr3L:20982625-20982745 1.0000 120 chr3R:21731754-21731874 1.0000 120 chr3L:8384123-8384243 1.0000 120 chr3L:2162766-2162886 1.0000 120 chr3L:2145118-2145238 1.0000 120 chr3R:21703495-21703615 1.0000 120 chr3L:19196823-19196943 1.0000 120 chr2L:16803764-16803884 1.0000 120 chrX:5002909-5003029 1.0000 120 chr2L:12530042-12530162 1.0000 120 chrX:1988820-1988940 1.0000 120 chr3L:6997078-6997198 1.0000 120 chrX:293435-293555 1.0000 120 chr2R:18244018-18244138 1.0000 120 chr3R:18624679-18624799 1.0000 120 chr3R:6664812-6664932 1.0000 120 chr3R:19264973-19265093 1.0000 120 chrX:10536077-10536197 1.0000 120 chr2L:664472-664592 1.0000 120 chr3L:17587911-17588031 1.0000 120 chr3R:23737753-23737873 1.0000 120 chr3L:8782120-8782240 1.0000 120 chrX:5013181-5013301 1.0000 120 chr2L:7938584-7938704 1.0000 120 chr2R:21801105-21801225 1.0000 120 chr2R:15737260-15737380 1.0000 120 chr3L:6084545-6084665 1.0000 120 chrX:17111349-17111469 1.0000 120 chr2R:18353647-18353767 1.0000 120 chr3L:21229948-21230068 1.0000 120 chr3R:23365187-23365307 1.0000 120 chr3R:6214376-6214496 1.0000 120 chr2L:3482164-3482284 1.0000 120 chrX:9401161-9401281 1.0000 120 chrX:23071350-23071470 1.0000 120 chr2L:20716876-20716996 1.0000 120 chr2R:18901748-18901868 1.0000 120 chr3R:14009809-14009929 1.0000 120 chr3L:22743054-22743174 1.0000 120 chr2R:22148064-22148184 1.0000 120 chr3L:10444044-10444164 1.0000 120 chr3L:793819-793939 1.0000 120 chr3L:4395650-4395770 1.0000 120 chr3L:11246922-11247042 1.0000 120 chr2R:15599950-15600070 1.0000 120 chr3L:9765354-9765474 1.0000 120 chr3R:22594374-22594494 1.0000 120 chr2L:7522926-7523046 1.0000 120 chr2R:11069135-11069255 1.0000 120 chr3R:30567350-30567470 1.0000 120 chr3L:11536870-11536990 1.0000 120 chr3L:6453565-6453685 1.0000 120 chr2R:23761526-23761646 1.0000 120 chr2L:14023478-14023598 1.0000 120 chr3L:10903445-10903565 1.0000 120 chrX:18558762-18558882 1.0000 120 chr3R:31251507-31251627 1.0000 120 chr3R:22150051-22150171 1.0000 120 chr3L:6307401-6307521 1.0000 120 chr3R:12381452-12381572 1.0000 120 chr3R:27175860-27175980 1.0000 120 chrX:16873145-16873265 1.0000 120 chr3R:14720227-14720347 1.0000 120 chr3L:19326201-19326321 1.0000 120 chr2R:8584848-8584968 1.0000 120 chr3R:4179220-4179340 1.0000 120 chr2L:18005661-18005781 1.0000 120 chr3R:22668761-22668881 1.0000 120 chr2L:19990016-19990136 1.0000 120 chr3R:29847241-29847361 1.0000 120 chr2L:3635483-3635603 1.0000 120 chr3R:23324083-23324203 1.0000 120 chrX:20130549-20130669 1.0000 120 chr3L:741862-741982 1.0000 120 chr3L:16643114-16643234 1.0000 120 chrX:17112174-17112294 1.0000 120 chr2L:17427316-17427436 1.0000 120 chrX:3436407-3436527 1.0000 120 chr3R:31767691-31767811 1.0000 120 chrX:1966897-1967017 1.0000 120 chr2R:9032818-9032938 1.0000 120 chr3L:11444246-11444366 1.0000 120 chr3L:16463942-16464062 1.0000 120 chr2R:19904077-19904197 1.0000 120 chr3L:5626603-5626723 1.0000 120 chr2L:14413600-14413720 1.0000 120 chr2L:604252-604372 1.0000 120 chr2L:2858596-2858716 1.0000 120 chr3L:10376745-10376865 1.0000 120 chr2L:7277700-7277820 1.0000 120 chrX:3739360-3739480 1.0000 120 chr3R:30344703-30344823 1.0000 120 chr3L:4346516-4346636 1.0000 120 chr2R:5496248-5496368 1.0000 120 chr3R:13857436-13857556 1.0000 120 chr3L:1371126-1371246 1.0000 120 chr2L:7949171-7949291 1.0000 120 chr3L:15544490-15544610 1.0000 120 chr2R:23024313-23024433 1.0000 120 chr3R:9870543-9870663 1.0000 120 chr3R:26019346-26019466 1.0000 120 chr2R:7912097-7912217 1.0000 120 chr2L:16521872-16521992 1.0000 120 chr3R:15113694-15113814 1.0000 120 chr3L:20570375-20570495 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG4318/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4318.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.343 C 0.153 G 0.15 T 0.355 Background letter frequencies (from file dataset with add-one prior applied): A 0.343 C 0.153 G 0.15 T 0.355 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTCAKTGC MEME-1 width = 8 sites = 30 llr = 268 E-value = 2.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCAKTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::7:::: pos.-specific C 12a:1::a probability G 12:35:a: matrix T 86::4a:: bits 2.7 * ** 2.5 * ** 2.2 * ** 1.9 * ** Relative 1.6 * ** Entropy 1.4 * *** (12.9 bits) 1.1 ** *** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTCAGTGC consensus G GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAKTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21229948-21230068 110 3.53e-06 TCGACAGTTT TTCGGTGC GTG chr3L:1371126-1371246 73 1.31e-05 AGTTTTTGTT TTCAGTGC ATGTAAatct chr3R:14720227-14720347 107 1.31e-05 CACCGTTTCT TGCGGTGC ACCTAT chr3R:23365187-23365307 98 1.31e-05 CCTTGTTTCT TTCAGTGC AACTCCAATG chr2R:7173222-7173342 37 1.31e-05 TTCAAATTGT TTCAGTGC CATAACTCTT chr3R:13831218-13831338 98 1.31e-05 ACCTGTTTTT TTCAGTGC TTTGACAATT chr2R:23000880-23001000 77 1.80e-05 TTAATTTTTT TCCGGTGC ATACACACAC chr2L:20943289-20943409 98 1.80e-05 CGACATGGCA TCCGGTGC AAGTGATAAC chr3R:22668761-22668881 111 2.15e-05 TGCAATTTCT TCCAGTGC AG chr2L:14318770-14318890 99 3.14e-05 GCACCCAATC TTCGTTGC AAGTTCCACA chr3R:9870543-9870663 87 5.82e-05 TGTTTACAAA TTCATTGC AGTGTCATTA chr3L:19326201-19326321 39 5.82e-05 TTTTCAGTCT TTCATTGC TTCAATTAAT chr2L:18725010-18725130 112 5.82e-05 GTTGTATTTT CTCAGTGC A chr3L:12073243-12073363 99 5.82e-05 TAATTTTTTT CTCAGTGC AGATACTTGA chr2R:11763105-11763225 42 5.82e-05 TATAGTTTAT TGCGTTGC TATTATATAG chrX:16859867-16859987 10 5.82e-05 TAATTTATT TTCATTGC AATAAATCAA chr3L:20562833-20562953 76 5.82e-05 AGTCTTAGAT TTCATTGC GTATTAATAA chr3L:1200465-1200585 100 5.82e-05 CTGACAGAAC TTCATTGC ATAGATAGCT chr3L:8384123-8384243 36 6.93e-05 TCTGCACAGC TGCATTGC TCCACTTTGA chr2R:6530770-6530890 79 6.93e-05 AAATTATATT TGCATTGC TATTTCGAAG chr3R:19996458-19996578 19 6.93e-05 GATACTTACA CGCAGTGC GGACTTGGGA chr2L:2858596-2858716 67 7.69e-05 CTCTCAAGAA TTCGCTGC GATATTTGCA chr3L:1905414-1905534 109 7.69e-05 GTATCTCAAG TTCGCTGC TTTC chrX:18675893-18676013 89 7.69e-05 TCGGCATGCT GTCAGTGC TGAAAAGCTA chr2L:16521872-16521992 37 9.24e-05 AGATCAATAT TCCGTTGC CTTAGTTTTT chrX:3739360-3739480 95 9.24e-05 TTCGTCACCA TTCACTGC TGGGCGACGT chr2L:14635097-14635217 27 1.06e-04 TGGCAGTACA TGCACTGC AACCAAAGta chrX:1979850-1979970 110 1.06e-04 TTCGCCTACC GCCGGTGC AGC chr3R:29982167-29982287 34 1.26e-04 CTTCTTATTT CTCATTGC GAAGAACCAG chr3R:30567350-30567470 50 1.54e-04 TCAACATAAA GGCATTGC GTGTGAATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAKTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21229948-21230068 3.5e-06 109_[+1]_3 chr3L:1371126-1371246 1.3e-05 72_[+1]_40 chr3R:14720227-14720347 1.3e-05 106_[+1]_6 chr3R:23365187-23365307 1.3e-05 97_[+1]_15 chr2R:7173222-7173342 1.3e-05 36_[+1]_76 chr3R:13831218-13831338 1.3e-05 97_[+1]_15 chr2R:23000880-23001000 1.8e-05 76_[+1]_36 chr2L:20943289-20943409 1.8e-05 97_[+1]_15 chr3R:22668761-22668881 2.2e-05 110_[+1]_2 chr2L:14318770-14318890 3.1e-05 98_[+1]_14 chr3R:9870543-9870663 5.8e-05 86_[+1]_26 chr3L:19326201-19326321 5.8e-05 38_[+1]_74 chr2L:18725010-18725130 5.8e-05 111_[+1]_1 chr3L:12073243-12073363 5.8e-05 98_[+1]_14 chr2R:11763105-11763225 5.8e-05 41_[+1]_71 chrX:16859867-16859987 5.8e-05 9_[+1]_103 chr3L:20562833-20562953 5.8e-05 75_[+1]_37 chr3L:1200465-1200585 5.8e-05 99_[+1]_13 chr3L:8384123-8384243 6.9e-05 35_[+1]_77 chr2R:6530770-6530890 6.9e-05 78_[+1]_34 chr3R:19996458-19996578 6.9e-05 18_[+1]_94 chr2L:2858596-2858716 7.7e-05 66_[+1]_46 chr3L:1905414-1905534 7.7e-05 108_[+1]_4 chrX:18675893-18676013 7.7e-05 88_[+1]_24 chr2L:16521872-16521992 9.2e-05 36_[+1]_76 chrX:3739360-3739480 9.2e-05 94_[+1]_18 chr2L:14635097-14635217 0.00011 26_[+1]_86 chrX:1979850-1979970 0.00011 109_[+1]_3 chr3R:29982167-29982287 0.00013 33_[+1]_79 chr3R:30567350-30567470 0.00015 49_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAKTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCAKTGC width=8 seqs=30 chr3L:21229948-21230068 ( 110) TTCGGTGC 1 chr3L:1371126-1371246 ( 73) TTCAGTGC 1 chr3R:14720227-14720347 ( 107) TGCGGTGC 1 chr3R:23365187-23365307 ( 98) TTCAGTGC 1 chr2R:7173222-7173342 ( 37) TTCAGTGC 1 chr3R:13831218-13831338 ( 98) TTCAGTGC 1 chr2R:23000880-23001000 ( 77) TCCGGTGC 1 chr2L:20943289-20943409 ( 98) TCCGGTGC 1 chr3R:22668761-22668881 ( 111) TCCAGTGC 1 chr2L:14318770-14318890 ( 99) TTCGTTGC 1 chr3R:9870543-9870663 ( 87) TTCATTGC 1 chr3L:19326201-19326321 ( 39) TTCATTGC 1 chr2L:18725010-18725130 ( 112) CTCAGTGC 1 chr3L:12073243-12073363 ( 99) CTCAGTGC 1 chr2R:11763105-11763225 ( 42) TGCGTTGC 1 chrX:16859867-16859987 ( 10) TTCATTGC 1 chr3L:20562833-20562953 ( 76) TTCATTGC 1 chr3L:1200465-1200585 ( 100) TTCATTGC 1 chr3L:8384123-8384243 ( 36) TGCATTGC 1 chr2R:6530770-6530890 ( 79) TGCATTGC 1 chr3R:19996458-19996578 ( 19) CGCAGTGC 1 chr2L:2858596-2858716 ( 67) TTCGCTGC 1 chr3L:1905414-1905534 ( 109) TTCGCTGC 1 chrX:18675893-18676013 ( 89) GTCAGTGC 1 chr2L:16521872-16521992 ( 37) TCCGTTGC 1 chrX:3739360-3739480 ( 95) TTCACTGC 1 chr2L:14635097-14635217 ( 27) TGCACTGC 1 chrX:1979850-1979970 ( 110) GCCGGTGC 1 chr3R:29982167-29982287 ( 34) CTCATTGC 1 chr3R:30567350-30567470 ( 50) GGCATTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAKTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 2.8e+001 -1155 -19 -58 111 -1155 13 64 76 -1155 271 -1155 -1155 96 -1155 115 -1155 -1155 -19 164 17 -1155 -1155 -1155 150 -1155 -1155 274 -1155 -1155 271 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAKTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.8e+001 0.000000 0.133333 0.100000 0.766667 0.000000 0.166667 0.233333 0.600000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.133333 0.466667 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAKTGC MEME-1 regular expression -------------------------------------------------------------------------------- T[TG]C[AG][GT]TGC -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGCTGC MEME-2 width = 8 sites = 9 llr = 98 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:21: pos.-specific C :a::8::9 probability G a:891:9: matrix T ::2:18:1 bits 2.7 ** 2.5 ** 2.2 ** * ** 1.9 ** * ** Relative 1.6 ***** ** Entropy 1.4 ***** ** (15.8 bits) 1.1 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGCTGC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1371126-1371246 103 1.27e-06 atctgtcagt gcggcagc agcttcagca chr2R:8584848-8584968 4 1.27e-06 gct gcggcagc gccgcgggca chr2L:14635097-14635217 6 1.90e-06 CAACT GCGGGTGC TGCTGGCAGT chr3R:30567350-30567470 13 3.42e-06 GCTCGGTGAT GCTGCTGC CCAATATACA chr3R:30343202-30343322 102 3.42e-06 CTGTGCAGTT GCTGCTGC CACCAAAAGC chr2R:5496248-5496368 96 4.91e-06 CTTCACGAAT GCGGTTGC CTTTGGCGCT chr2R:6530770-6530890 13 6.41e-06 GTAACTTTAT GCGGCTGT GACCTTTTAA chr3L:1392698-1392818 89 9.35e-06 TGGAAAACTT GCGACTGC CACGCGATCG chr2L:14366712-14366832 64 9.35e-06 TTTCATCTTT GCGGCTAC CTTCTGAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1371126-1371246 1.3e-06 102_[+2]_10 chr2R:8584848-8584968 1.3e-06 3_[+2]_109 chr2L:14635097-14635217 1.9e-06 5_[+2]_107 chr3R:30567350-30567470 3.4e-06 12_[+2]_100 chr3R:30343202-30343322 3.4e-06 101_[+2]_11 chr2R:5496248-5496368 4.9e-06 95_[+2]_17 chr2R:6530770-6530890 6.4e-06 12_[+2]_100 chr3L:1392698-1392818 9.4e-06 88_[+2]_24 chr2L:14366712-14366832 9.4e-06 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGCTGC width=8 seqs=9 chr3L:1371126-1371246 ( 103) GCGGCAGC 1 chr2R:8584848-8584968 ( 4) GCGGCAGC 1 chr2L:14635097-14635217 ( 6) GCGGGTGC 1 chr3R:30567350-30567470 ( 13) GCTGCTGC 1 chr3R:30343202-30343322 ( 102) GCTGCTGC 1 chr2R:5496248-5496368 ( 96) GCGGTTGC 1 chr2R:6530770-6530890 ( 13) GCGGCTGT 1 chr3L:1392698-1392818 ( 89) GCGACTGC 1 chr2L:14366712-14366832 ( 64) GCGGCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.0203 E= 1.6e+003 -982 -982 274 -982 -982 271 -982 -982 -982 -982 237 -67 -162 -982 257 -982 -982 235 -43 -167 -62 -982 -982 113 -162 -982 257 -982 -982 254 -982 -167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.777778 0.222222 0.111111 0.000000 0.888889 0.000000 0.000000 0.777778 0.111111 0.111111 0.222222 0.000000 0.000000 0.777778 0.111111 0.000000 0.888889 0.000000 0.000000 0.888889 0.000000 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCTGC MEME-2 regular expression -------------------------------------------------------------------------------- GC[GT]GC[TA]GC -------------------------------------------------------------------------------- Time 13.95 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACTSCS MEME-3 width = 8 sites = 11 llr = 117 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACTSCS MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a::::: pos.-specific C :a:a:475 probability G :::::635 matrix T ::::a::: bits 2.7 * * 2.5 * * 2.2 * * 1.9 * * ** Relative 1.6 **** *** Entropy 1.4 ******** (15.4 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ACACTGCC consensus CGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACTSCS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17586925-17587045 82 3.43e-06 TTTCCATTCA ACACTGCC TACTTTAGAA chr2R:7912097-7912217 36 6.80e-06 ATATGTCATC ACACTGCG GGGAATCACA chr3R:13857436-13857556 37 6.80e-06 CAGGCTGTGC ACACTGCG AGAAAATTGG chr3R:29847241-29847361 2 6.80e-06 T ACACTGCG GGAAATAGGG chr3L:10444044-10444164 9 6.80e-06 ATGCAGCT ACACTGCG ATTTATTCCT chrX:9401161-9401281 64 6.80e-06 TTGGGCCATT ACACTGCG AAAGAAATTC chr2L:664472-664592 76 1.03e-05 TCTAATGGGA ACACTCCC AAACAACCAA chr3L:1200465-1200585 59 1.03e-05 tttaattaGG ACACTCCC TTTATTAATT chrX:20130549-20130669 57 1.71e-05 AAACTGTATT ACACTGGC CCAAAAGTTG chr2R:7744726-7744846 106 2.38e-05 CAATTTCATC ACACTCGC GTACTTC chr2R:23016241-23016361 48 2.38e-05 ATTGTGAGCC ACACTCGC AGTAAAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACTSCS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17586925-17587045 3.4e-06 81_[+3]_31 chr2R:7912097-7912217 6.8e-06 35_[+3]_77 chr3R:13857436-13857556 6.8e-06 36_[+3]_76 chr3R:29847241-29847361 6.8e-06 1_[+3]_111 chr3L:10444044-10444164 6.8e-06 8_[+3]_104 chrX:9401161-9401281 6.8e-06 63_[+3]_49 chr2L:664472-664592 1e-05 75_[+3]_37 chr3L:1200465-1200585 1e-05 58_[+3]_54 chrX:20130549-20130669 1.7e-05 56_[+3]_56 chr2R:7744726-7744846 2.4e-05 105_[+3]_7 chr2R:23016241-23016361 2.4e-05 47_[+3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACTSCS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACTSCS width=8 seqs=11 chr3L:17586925-17587045 ( 82) ACACTGCC 1 chr2R:7912097-7912217 ( 36) ACACTGCG 1 chr3R:13857436-13857556 ( 37) ACACTGCG 1 chr3R:29847241-29847361 ( 2) ACACTGCG 1 chr3L:10444044-10444164 ( 9) ACACTGCG 1 chrX:9401161-9401281 ( 64) ACACTGCG 1 chr2L:664472-664592 ( 76) ACACTCCC 1 chr3L:1200465-1200585 ( 59) ACACTCCC 1 chrX:20130549-20130669 ( 57) ACACTGGC 1 chr2R:7744726-7744846 ( 106) ACACTCGC 1 chr2R:23016241-23016361 ( 48) ACACTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACTSCS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6812 E= 1.8e+003 154 -1010 -1010 -1010 -1010 271 -1010 -1010 154 -1010 -1010 -1010 -1010 271 -1010 -1010 -1010 -1010 -1010 150 -1010 125 208 -1010 -1010 225 86 -1010 -1010 184 160 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACTSCS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.8e+003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.545455 0.454545 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACTSCS MEME-3 regular expression -------------------------------------------------------------------------------- ACACT[GC][CG][CG] -------------------------------------------------------------------------------- Time 20.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCAGAGG MEME-4 width = 8 sites = 2 llr = 27 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCAGAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:a:: pos.-specific C ::a::::: probability G aa::a:aa matrix T :::::::: bits 2.7 *** * ** 2.5 *** * ** 2.2 *** * ** 1.9 *** * ** Relative 1.6 ******** Entropy 1.4 ******** (19.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCAGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8584848-8584968 18 1.37e-06 cagcgccgcg ggcagagg cagcggGTAA chrX:2220012-2220132 13 1.37e-06 ACTTGCATAA GGCAGAGG TTTCCAAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8584848-8584968 1.4e-06 17_[+4]_95 chrX:2220012-2220132 1.4e-06 12_[+4]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCAGAGG width=8 seqs=2 chr2R:8584848-8584968 ( 18) GGCAGAGG 1 chrX:2220012-2220132 ( 13) GGCAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.2e+004 -765 -765 273 -765 -765 -765 273 -765 -765 271 -765 -765 154 -765 -765 -765 -765 -765 273 -765 154 -765 -765 -765 -765 -765 273 -765 -765 -765 273 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAGAGG MEME-4 regular expression -------------------------------------------------------------------------------- GGCAGAGG -------------------------------------------------------------------------------- Time 26.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCSCCSA MEME-5 width = 8 sites = 2 llr = 26 E-value = 3.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCSCCSA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C ::a5aa5: probability G aa:5::5: matrix T :::::::: bits 2.7 *** ** 2.5 *** ** 2.2 *** ** 1.9 *** ** Relative 1.6 ******** Entropy 1.4 ******** (18.6 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCCCCCA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSCCSA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18493287-18493407 111 2.54e-06 TTAAATTAAG GGCCCCGA AA chr2R:12603419-12603539 47 2.54e-06 TTACAGAATT GGCGCCCA ACGTGGGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSCCSA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18493287-18493407 2.5e-06 110_[+5]_2 chr2R:12603419-12603539 2.5e-06 46_[+5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSCCSA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCSCCSA width=8 seqs=2 chr2L:18493287-18493407 ( 111) GGCCCCGA 1 chr2R:12603419-12603539 ( 47) GGCGCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSCCSA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.9e+004 -765 -765 273 -765 -765 -765 273 -765 -765 271 -765 -765 -765 171 173 -765 -765 271 -765 -765 -765 271 -765 -765 -765 171 173 -765 154 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSCCSA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCSCCSA MEME-5 regular expression -------------------------------------------------------------------------------- GGC[CG]CC[CG]A -------------------------------------------------------------------------------- Time 32.68 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8353362-8353482 1.00e+00 120 chr2L:20295992-20296112 5.13e-01 120 chr3L:1200465-1200585 1.44e-03 58_[+3(1.03e-05)]_33_[+1(5.82e-05)]_\ 13 chr2L:18751467-18751587 4.05e-01 120 chr3R:15922750-15922870 5.06e-01 120 chr2R:13768486-13768606 3.86e-01 120 chr3R:6222260-6222380 9.56e-01 120 chr2L:20943289-20943409 1.24e-02 97_[+1(1.80e-05)]_15 chr3R:7992256-7992376 9.97e-01 120 chr3R:13831218-13831338 1.11e-01 97_[+1(1.31e-05)]_15 chr2R:12603419-12603539 4.14e-02 46_[+5(2.54e-06)]_66 chr3R:10150092-10150212 6.79e-01 120 chr2R:8152612-8152732 4.51e-01 120 chr3R:25532543-25532663 9.87e-01 120 chr2R:20024350-20024470 5.65e-01 120 chr2L:9141074-9141194 1.41e-01 120 chr2L:18493287-18493407 2.22e-02 110_[+5(2.54e-06)]_2 chr2L:15321554-15321674 4.90e-01 120 chr2L:14366712-14366832 5.13e-03 63_[+2(9.35e-06)]_49 chr3R:24204133-24204253 7.52e-02 120 chr3R:24777251-24777371 9.98e-01 120 chr3L:5609645-5609765 6.11e-01 120 chr3R:5330419-5330539 9.14e-01 120 chr3L:4509093-4509213 9.93e-01 120 chr3L:8422416-8422536 5.66e-01 120 chr3L:14063533-14063653 2.77e-01 120 chr2R:13750694-13750814 2.25e-04 76_[+5(2.54e-06)]_13_[+5(9.01e-05)]_\ 15 chr4:831973-832093 5.90e-01 120 chr3L:10398825-10398945 5.60e-01 120 chr2R:20196863-20196983 7.84e-01 120 chr2R:12603622-12603742 9.31e-01 120 chr2R:12413292-12413412 2.12e-01 120 chr2L:5730642-5730762 9.75e-01 120 chr3R:29982167-29982287 2.60e-02 120 chr2R:15883454-15883574 5.05e-01 120 chr3L:4302276-4302396 7.79e-01 120 chr3R:11595707-11595827 8.91e-01 120 chr2R:13769545-13769665 2.16e-01 120 chr3L:12060244-12060364 8.95e-01 120 chr2L:19307781-19307901 9.92e-01 120 chr3L:3536514-3536634 3.84e-03 7_[+4(5.30e-05)]_105 chr3L:20562833-20562953 3.41e-02 75_[+1(5.82e-05)]_37 chr2L:2478465-2478585 4.80e-01 120 chr3L:15214802-15214922 4.61e-01 120 chrX:13911273-13911393 5.84e-01 120 chrX:10953338-10953458 9.99e-01 120 chr3L:10792082-10792202 9.33e-01 120 chr3L:10792293-10792413 1.00e+00 120 chr2R:23016241-23016361 3.13e-02 47_[+3(2.38e-05)]_65 chr3L:10853683-10853803 9.00e-01 120 chrX:838140-838260 6.99e-01 120 chrX:1979850-1979970 1.20e-02 120 chr3R:30343202-30343322 5.92e-04 101_[+2(3.42e-06)]_11 chr3L:17586925-17587045 2.24e-02 81_[+3(3.43e-06)]_31 chr3R:23675850-23675970 6.71e-01 120 chr2L:16522079-16522199 9.84e-01 120 chr3R:4471906-4472026 9.11e-01 120 chrX:7173972-7174092 9.63e-01 120 chr2L:14318770-14318890 8.51e-03 98_[+1(3.14e-05)]_14 chr3R:30329994-30330114 3.43e-01 120 chrX:2220012-2220132 2.61e-02 12_[+4(1.37e-06)]_100 chr2R:23000880-23001000 1.94e-03 76_[+1(1.80e-05)]_36 chrX:1198001-1198121 4.55e-01 120 chrX:6617546-6617666 4.71e-01 120 chr3R:6215158-6215278 1.48e-02 120 chrX:9467766-9467886 9.64e-01 120 chr2L:2185475-2185595 9.60e-01 120 chr2L:18907579-18907699 9.65e-01 120 chrX:16859867-16859987 1.64e-01 9_[+1(5.82e-05)]_103 chrX:17719406-17719526 1.48e-01 120 chr2R:20047606-20047726 8.75e-01 120 chr2R:11763105-11763225 3.49e-02 41_[+1(5.82e-05)]_71 chrX:1979139-1979259 5.50e-01 120 chr3R:14279741-14279861 8.20e-01 120 chrX:14214599-14214719 8.56e-02 120 chr3L:12073243-12073363 2.04e-01 98_[+1(5.82e-05)]_14 chr2L:13925818-13925938 6.44e-01 120 chr2R:22727164-22727284 8.17e-01 120 chr2R:23057018-23057138 4.19e-02 30_[+5(9.01e-05)]_82 chr3R:14280450-14280570 3.35e-01 120 chrX:18675893-18676013 1.22e-01 88_[+1(7.69e-05)]_24 chr3L:19329641-19329761 3.72e-01 120 chrX:10960096-10960216 9.31e-01 120 chrX:18542048-18542168 5.42e-01 120 chrX:6357136-6357256 3.29e-01 120 chr3R:19996458-19996578 7.82e-02 18_[+1(6.93e-05)]_94 chr2R:17243803-17243923 8.51e-01 120 chr2R:16742203-16742323 1.47e-01 120 chr2R:12984110-12984230 8.66e-01 120 chr2L:11505329-11505449 5.70e-01 120 chr3L:2541462-2541582 5.77e-01 120 chr3R:8948116-8948236 9.91e-01 120 chr3L:20980628-20980748 3.05e-01 120 chr3L:10796075-10796195 9.31e-01 120 chr3L:22106798-22106918 5.91e-01 120 chr2R:9024682-9024802 5.56e-01 120 chrX:3045557-3045677 9.07e-01 120 chr3R:18619675-18619795 7.13e-01 120 chr3L:12023537-12023657 9.62e-01 120 chr2R:14920999-14921119 9.98e-01 120 chr3R:23407980-23408100 8.87e-01 120 chr2R:15737510-15737630 6.47e-01 120 chr3R:24976216-24976336 8.57e-01 120 chr3R:14456589-14456709 9.00e-01 120 chr2L:3731243-3731363 6.89e-01 120 chr2L:19235365-19235485 4.13e-01 120 chr2R:6530770-6530890 7.92e-04 12_[+2(6.41e-06)]_58_[+1(6.93e-05)]_\ 34 chr3L:6263592-6263712 1.14e-01 120 chr3R:24886606-24886726 9.30e-01 120 chr2L:14635097-14635217 1.33e-04 5_[+2(1.90e-06)]_107 chrX:14922531-14922651 4.61e-01 120 chr2R:10216587-10216707 7.65e-01 120 chr2R:7744726-7744846 1.86e-01 105_[+3(2.38e-05)]_7 chr3R:15541061-15541181 1.42e-01 120 chr3R:13788327-13788447 1.00e+00 120 chr3L:8423300-8423420 9.84e-01 120 chr3L:6331834-6331954 1.00e+00 120 chr3L:3657008-3657128 4.47e-01 120 chr3R:8918969-8919089 6.83e-01 120 chr3R:19808203-19808323 9.45e-01 120 chr3R:30828637-30828757 8.27e-01 120 chr2L:18725010-18725130 2.52e-02 111_[+1(5.82e-05)]_1 chrX:4170614-4170734 7.02e-01 120 chr3L:18096899-18097019 5.73e-01 120 chr2R:7905138-7905258 5.53e-01 120 chr3L:15708671-15708791 8.71e-01 120 chr3L:21224409-21224529 9.59e-01 120 chr2L:20940909-20941029 3.61e-01 120 chr2L:7598926-7599046 7.48e-03 91_[+5(1.91e-05)]_21 chr2L:7918896-7919016 2.90e-01 120 chr2R:20055387-20055507 6.27e-01 120 chr2R:7173222-7173342 4.09e-02 36_[+1(1.31e-05)]_76 chr3L:756494-756614 5.88e-01 120 chr3L:20570173-20570293 4.90e-01 120 chrX:4959046-4959166 6.82e-01 120 chr3R:8107012-8107132 1.66e-02 120 chrX:724617-724737 3.67e-01 120 chr3L:21046213-21046333 7.30e-03 120 chr2R:14111926-14112046 2.00e-01 120 chr3L:12109359-12109479 5.26e-02 30_[+4(5.30e-05)]_82 chrX:8843915-8844035 4.02e-01 120 chr3R:23416678-23416798 9.79e-01 120 chr3R:24891076-24891196 5.08e-01 120 chr3L:1905414-1905534 7.52e-02 108_[+1(7.69e-05)]_4 chr3L:1392698-1392818 3.29e-03 88_[+2(9.35e-06)]_24 chr3L:20982625-20982745 4.91e-01 120 chr3R:21731754-21731874 3.91e-02 120 chr3L:8384123-8384243 4.49e-02 35_[+1(6.93e-05)]_77 chr3L:2162766-2162886 1.94e-01 120 chr3L:2145118-2145238 1.01e-01 120 chr3R:21703495-21703615 7.12e-01 120 chr3L:19196823-19196943 9.43e-01 120 chr2L:16803764-16803884 5.44e-01 120 chrX:5002909-5003029 4.62e-01 120 chr2L:12530042-12530162 9.32e-01 120 chrX:1988820-1988940 1.67e-02 3_[+5(1.91e-05)]_109 chr3L:6997078-6997198 1.98e-01 120 chrX:293435-293555 2.28e-01 120 chr2R:18244018-18244138 4.54e-01 120 chr3R:18624679-18624799 6.06e-01 120 chr3R:6664812-6664932 5.85e-01 120 chr3R:19264973-19265093 3.41e-01 120 chrX:10536077-10536197 7.37e-01 120 chr2L:664472-664592 1.00e-02 75_[+3(1.03e-05)]_37 chr3L:17587911-17588031 8.65e-01 120 chr3R:23737753-23737873 9.02e-01 120 chr3L:8782120-8782240 5.91e-01 120 chrX:5013181-5013301 7.23e-02 120 chr2L:7938584-7938704 5.49e-01 120 chr2R:21801105-21801225 8.46e-01 120 chr2R:15737260-15737380 5.55e-01 120 chr3L:6084545-6084665 6.10e-02 120 chrX:17111349-17111469 2.13e-01 120 chr2R:18353647-18353767 5.30e-01 120 chr3L:21229948-21230068 2.66e-02 109_[+1(3.53e-06)]_3 chr3R:23365187-23365307 2.57e-02 97_[+1(1.31e-05)]_15 chr3R:6214376-6214496 5.40e-01 120 chr2L:3482164-3482284 6.92e-01 120 chrX:9401161-9401281 6.29e-05 11_[+5(9.01e-05)]_44_[+3(6.80e-06)]_\ 49 chrX:23071350-23071470 7.99e-03 120 chr2L:20716876-20716996 8.80e-01 120 chr2R:18901748-18901868 3.74e-01 120 chr3R:14009809-14009929 1.73e-01 120 chr3L:22743054-22743174 4.28e-01 120 chr2R:22148064-22148184 2.20e-01 120 chr3L:10444044-10444164 1.44e-03 8_[+3(6.80e-06)]_104 chr3L:793819-793939 4.12e-02 55_[+4(5.30e-05)]_57 chr3L:4395650-4395770 9.95e-01 120 chr3L:11246922-11247042 4.88e-01 120 chr2R:15599950-15600070 9.38e-01 120 chr3L:9765354-9765474 1.00e+00 120 chr3R:22594374-22594494 9.12e-01 120 chr2L:7522926-7523046 5.09e-01 120 chr2R:11069135-11069255 6.78e-01 120 chr3R:30567350-30567470 1.83e-04 12_[+2(3.42e-06)]_100 chr3L:11536870-11536990 8.74e-01 120 chr3L:6453565-6453685 3.94e-01 120 chr2R:23761526-23761646 7.82e-01 120 chr2L:14023478-14023598 9.25e-01 120 chr3L:10903445-10903565 7.92e-01 120 chrX:18558762-18558882 7.43e-01 120 chr3R:31251507-31251627 9.66e-01 120 chr3R:22150051-22150171 9.13e-01 120 chr3L:6307401-6307521 7.25e-01 120 chr3R:12381452-12381572 9.63e-01 120 chr3R:27175860-27175980 6.32e-01 120 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************