******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4282.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:11351545-11351665 1.0000 120 chr3R:13065274-13065394 1.0000 120 chr3R:26036142-26036262 1.0000 120 chr3L:10320897-10321017 1.0000 120 chr2L:2364295-2364415 1.0000 120 chr3L:12485095-12485215 1.0000 120 chrX:7735318-7735438 1.0000 120 chr3R:26967799-26967919 1.0000 120 chr2R:11593279-11593399 1.0000 120 chr3R:6406376-6406496 1.0000 120 chr2R:8051336-8051456 1.0000 120 chr3R:31805357-31805477 1.0000 120 chr3R:29725679-29725799 1.0000 120 chr2L:8545666-8545786 1.0000 120 chr3L:8175918-8176038 1.0000 120 chr3L:15234603-15234723 1.0000 120 chr2L:3770255-3770375 1.0000 120 chr2R:6635977-6636097 1.0000 120 chr2L:8084930-8085050 1.0000 120 chr3R:21643326-21643446 1.0000 120 chr3R:20949986-20950106 1.0000 120 chr3L:9678208-9678328 1.0000 120 chr3R:31060309-31060429 1.0000 120 chr3R:5599634-5599754 1.0000 120 chr2L:21263609-21263729 1.0000 120 chr3L:9504982-9505102 1.0000 120 chr2R:18133961-18134081 1.0000 120 chrX:18516134-18516254 1.0000 120 chr3R:15286175-15286295 1.0000 120 chr3R:5104457-5104577 1.0000 120 chrX:15709877-15709997 1.0000 120 chr2L:21308402-21308522 1.0000 120 chr3L:21540090-21540210 1.0000 120 chr2R:7586844-7586964 1.0000 120 chr3L:3320125-3320245 1.0000 120 chr2L:5044360-5044480 1.0000 120 chr2L:7544474-7544594 1.0000 120 chr2R:6811479-6811599 1.0000 120 chrX:1858930-1859050 1.0000 120 chr3R:17777042-17777162 1.0000 120 chr2L:1427860-1427980 1.0000 120 chr2L:5987103-5987223 1.0000 120 chr2L:4387007-4387127 1.0000 120 chr2R:24571638-24571758 1.0000 120 chr3L:9358764-9358884 1.0000 120 chr3R:21657250-21657370 1.0000 120 chr3R:25662255-25662375 1.0000 120 chr3L:14972746-14972866 1.0000 120 chr3L:16050033-16050153 1.0000 120 chr3R:28634972-28635092 1.0000 120 chr3R:19903479-19903599 1.0000 120 chr3L:1298800-1298920 1.0000 120 chr2L:19756837-19756957 1.0000 120 chr3L:1549242-1549362 1.0000 120 chr2R:24411759-24411879 1.0000 120 chr2R:5693182-5693302 1.0000 120 chr3L:1575904-1576024 1.0000 120 chr3R:6100925-6101045 1.0000 120 chrX:13088250-13088370 1.0000 120 chr3L:639721-639841 1.0000 120 chr2R:8725808-8725928 1.0000 120 chr2R:11892645-11892765 1.0000 120 chr3R:18243734-18243854 1.0000 120 chr3R:14285948-14286068 1.0000 120 chr2L:4333921-4334041 1.0000 120 chr2R:18660567-18660687 1.0000 120 chr3R:31745680-31745800 1.0000 120 chr3L:224226-224346 1.0000 120 chr3R:6761003-6761123 1.0000 120 chr3L:17005079-17005199 1.0000 120 chr2R:10077628-10077748 1.0000 120 chr2R:16338320-16338440 1.0000 120 chr2L:9699209-9699329 1.0000 120 chr2L:6948786-6948906 1.0000 120 chr3R:10677674-10677794 1.0000 120 chr2L:9496628-9496748 1.0000 120 chr2R:14009153-14009273 1.0000 120 chr3L:21281171-21281291 1.0000 120 chr3L:9836712-9836832 1.0000 120 chr2R:14219871-14219991 1.0000 120 chrX:10600599-10600719 1.0000 120 chr2R:7246940-7247060 1.0000 120 chr3R:26536799-26536919 1.0000 120 chrX:3950248-3950368 1.0000 120 chr3R:19648718-19648838 1.0000 120 chr3R:13064265-13064385 1.0000 120 chrX:9156508-9156628 1.0000 120 chr3L:10682077-10682197 1.0000 120 chr3R:26035393-26035513 1.0000 120 chr2L:13165612-13165732 1.0000 120 chr2L:10967362-10967482 1.0000 120 chrX:8606309-8606429 1.0000 120 chr3L:22871020-22871140 1.0000 120 chr3L:10860189-10860309 1.0000 120 chr3R:24231212-24231332 1.0000 120 chr3L:11419476-11419596 1.0000 120 chr2R:6015708-6015828 1.0000 120 chr2L:9437428-9437548 1.0000 120 chr3L:11789992-11790112 1.0000 120 chrX:9106610-9106730 1.0000 120 chr3L:12804952-12805072 1.0000 120 chr3L:11358827-11358947 1.0000 120 chr3R:29064954-29065074 1.0000 120 chr2R:19292020-19292140 1.0000 120 chr2R:22401992-22402112 1.0000 120 chr2R:9692447-9692567 1.0000 120 chr2L:5724581-5724701 1.0000 120 chr3R:9240060-9240180 1.0000 120 chr2L:11829387-11829507 1.0000 120 chrX:11885428-11885548 1.0000 120 chr3L:1188916-1189036 1.0000 120 chr2R:16150114-16150234 1.0000 120 chr3L:13922399-13922519 1.0000 120 chr2R:7245400-7245520 1.0000 120 chrX:13755229-13755349 1.0000 120 chr3R:26121994-26122114 1.0000 120 chrX:9608777-9608897 1.0000 120 chr2R:15147773-15147893 1.0000 120 chr3R:18215411-18215531 1.0000 120 chr3L:19140471-19140591 1.0000 120 chr3L:21196720-21196840 1.0000 120 chr3R:26005929-26006049 1.0000 120 chrX:6756540-6756660 1.0000 120 chr2R:21183250-21183370 1.0000 120 chr3R:30802306-30802426 1.0000 120 chr3R:9054343-9054463 1.0000 120 chr2L:283187-283307 1.0000 120 chr3L:7359959-7360079 1.0000 120 chrX:21323969-21324089 1.0000 120 chr2R:17564697-17564817 1.0000 120 chr2L:15254330-15254450 1.0000 120 chr2R:15934666-15934786 1.0000 120 chr2R:9989023-9989143 1.0000 120 chr3L:3811175-3811295 1.0000 120 chr3R:20832966-20833086 1.0000 120 chr3R:23293202-23293322 1.0000 120 chr3R:11581522-11581642 1.0000 120 chr2L:21629305-21629425 1.0000 120 chrX:12015036-12015156 1.0000 120 chr3L:11833418-11833538 1.0000 120 chrX:16446910-16447030 1.0000 120 chr3R:27937874-27937994 1.0000 120 chr2R:7418690-7418810 1.0000 120 chr2L:7306912-7307032 1.0000 120 chr2L:19576611-19576731 1.0000 120 chrX:15860608-15860728 1.0000 120 chr2R:17458602-17458722 1.0000 120 chr3R:25740498-25740618 1.0000 120 chr2R:7989651-7989771 1.0000 120 chr3L:9899220-9899340 1.0000 120 chr2L:7043203-7043323 1.0000 120 chr3R:26566992-26567112 1.0000 120 chr2L:108135-108255 1.0000 120 chr2R:24186670-24186790 1.0000 120 chr2R:7249134-7249254 1.0000 120 chr3R:6893184-6893304 1.0000 120 chr2L:8437341-8437461 1.0000 120 chr3L:21318011-21318131 1.0000 120 chr3L:17597074-17597194 1.0000 120 chr3L:14002904-14003024 1.0000 120 chr2R:6741981-6742101 1.0000 120 chr3R:12406522-12406642 1.0000 120 chr2L:8030943-8031063 1.0000 120 chr2R:18774899-18775019 1.0000 120 chr3L:8827265-8827385 1.0000 120 chr3L:20922601-20922721 1.0000 120 chrX:5517071-5517191 1.0000 120 chr2R:17062595-17062715 1.0000 120 chr3L:14028945-14029065 1.0000 120 chr3L:8440869-8440989 1.0000 120 chr2R:6636188-6636308 1.0000 120 chr3R:16431794-16431914 1.0000 120 chr3R:18663584-18663704 1.0000 120 chr2R:8733449-8733569 1.0000 120 chrX:12574682-12574802 1.0000 120 chr3R:4319577-4319697 1.0000 120 chrX:3719853-3719973 1.0000 120 chr2L:12467874-12467994 1.0000 120 chr3R:15472763-15472883 1.0000 120 chr2L:73277-73397 1.0000 120 chr3L:18673137-18673257 1.0000 120 chr2R:16551949-16552069 1.0000 120 chr2L:15039422-15039542 1.0000 120 chr2R:8928079-8928199 1.0000 120 chr3R:5086933-5087053 1.0000 120 chr3R:9039028-9039148 1.0000 120 chr3L:17846354-17846474 1.0000 120 chrX:11621971-11622091 1.0000 120 chr3R:9055142-9055262 1.0000 120 chr3R:15287860-15287980 1.0000 120 chrX:16547538-16547658 1.0000 120 chr3L:18114504-18114624 1.0000 120 chr3L:21049669-21049789 1.0000 120 chr3R:4714087-4714207 1.0000 120 chr2L:10428695-10428815 1.0000 120 chr2R:17161030-17161150 1.0000 120 chr3L:22065806-22065926 1.0000 120 chrX:3811509-3811629 1.0000 120 chr3R:18242663-18242783 1.0000 120 chr3R:10350051-10350171 1.0000 120 chrX:4530103-4530223 1.0000 120 chrX:7307701-7307821 1.0000 120 chr2R:6132301-6132421 1.0000 120 chr3R:22547744-22547864 1.0000 120 chr3L:1647403-1647523 1.0000 120 chr3L:11120718-11120838 1.0000 120 chrX:14602672-14602792 1.0000 120 chr3R:20555906-20556026 1.0000 120 chr3R:14656957-14657077 1.0000 120 chr2R:13854264-13854384 1.0000 120 chr2R:22374999-22375119 1.0000 120 chr2L:14094764-14094884 1.0000 120 chr2L:2376062-2376182 1.0000 120 chrX:19887323-19887443 1.0000 120 chr3L:21216816-21216936 1.0000 120 chr2L:11203725-11203845 1.0000 120 chr3L:7861057-7861177 1.0000 120 chrX:2012940-2013060 1.0000 120 chr3R:27273665-27273785 1.0000 120 chr3L:19041928-19042048 1.0000 120 chrX:1370093-1370213 1.0000 120 chr2L:2858112-2858232 1.0000 120 chr3R:5758953-5759073 1.0000 120 chr2L:10565811-10565931 1.0000 120 chrX:1517645-1517765 1.0000 120 chrX:14839850-14839970 1.0000 120 chr2L:20807962-20808082 1.0000 120 chr3R:8819840-8819960 1.0000 120 chrX:6524340-6524460 1.0000 120 chr3R:17002367-17002487 1.0000 120 chr2R:23856892-23857012 1.0000 120 chr3R:17072717-17072837 1.0000 120 chr3R:30761364-30761484 1.0000 120 chrX:9152345-9152465 1.0000 120 chr3L:5769098-5769218 1.0000 120 chr2R:10559601-10559721 1.0000 120 chr2R:20832429-20832549 1.0000 120 chr3L:1295827-1295947 1.0000 120 chr2L:18859273-18859393 1.0000 120 chr2L:2177792-2177912 1.0000 120 chr3R:22664416-22664536 1.0000 120 chr2R:9881470-9881590 1.0000 120 chr2R:10819841-10819961 1.0000 120 chr2R:9110695-9110815 1.0000 120 chrX:11454511-11454631 1.0000 120 chr2R:7525606-7525726 1.0000 120 chr2R:6757178-6757298 1.0000 120 chr3R:28887962-28888082 1.0000 120 chr3L:18625953-18626073 1.0000 120 chr2R:23840039-23840159 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG4282/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4282.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.274 C 0.231 G 0.222 T 0.274 Background letter frequencies (from file dataset with add-one prior applied): A 0.274 C 0.231 G 0.222 T 0.274 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCACWGTG MEME-1 width = 8 sites = 52 llr = 492 E-value = 6.6e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCACWGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:4::: pos.-specific C 5a:9:::: probability G 5::1:a:a matrix T ::::5:a: bits 2.2 * * * 2.0 ** *** 1.7 ** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 **** *** (13.6 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACTGTG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACWGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2177792-2177912 71 2.45e-05 GCTCCACTGT GCACTGTG GTTACGTACT chr3L:19041928-19042048 68 2.45e-05 CGATTTTTAA CCACTGTG CACGACGGCC chr2L:10428695-10428815 46 2.45e-05 AAAACTTGAA GCACTGTG CCGTTATCAA chrX:12574682-12574802 77 2.45e-05 CATTCTTGTT CCACTGTG CAGGCTCACA chr2R:8733449-8733569 106 2.45e-05 CAAATGATGC CCACTGTG CGGGGCT chrX:5517071-5517191 32 2.45e-05 TCGTTTCGTC CCACTGTG CCATGTGTTG chr3L:8827265-8827385 84 2.45e-05 ATTCATTGCA CCACTGTG CCAACATCTG chr2L:10967362-10967482 25 2.45e-05 CGAAACTGCA CCACTGTG CAATAATGAG chr3R:6761003-6761123 55 2.45e-05 CTGCTAGATA CCACTGTG CGGAACTGGG chr3R:17777042-17777162 95 2.45e-05 TATGCTGCAA CCACTGTG CCGGGaacgg chrX:15709877-15709997 6 2.45e-05 AATTT CCACTGTG CTGTCTGCGC chr3R:5599634-5599754 111 2.45e-05 ACACACATAC CCACTGTG CA chr3L:9678208-9678328 49 2.45e-05 AGAACTTGCA CCACTGTG GTACAGTGAA chr2L:3770255-3770375 36 2.45e-05 CAATTTAGTT CCACTGTG CAGCACCTTA chr3R:29725679-29725799 42 2.45e-05 TAGGCCCACT GCACTGTG GTTCGAGTCC chr2R:8051336-8051456 63 2.45e-05 ACCGTTTCAA CCACTGTG CTGTTGAGAA chr2R:11593279-11593399 104 2.45e-05 TAAGATGGGT CCACTGTG GCTCGCTAA chrX:7735318-7735438 63 2.45e-05 GACGCTTGGC CCACTGTG CGATCTTCGT chr2L:2364295-2364415 76 2.45e-05 GCCTTGCGAC CCACTGTG CACGCTGCAC chr3L:10320897-10321017 46 2.45e-05 TATTTTAACA CCACTGTG CTGCGCTATC chr3R:13065274-13065394 43 2.45e-05 AGCACATGCA CCACTGTG CTCCGCTTCT chr3R:11351545-11351665 63 2.45e-05 AGACCTTGCA CCACTGTG CACTAAGTGA chr2R:6757178-6757298 56 4.90e-05 CCAGCTGAAT GCACAGTG GTGCAAAACG chr2R:8928079-8928199 42 4.90e-05 TTCTTGCCAC GCACAGTG GCGTCGCGCA chr3R:27937874-27937994 81 4.90e-05 GCACCGTAAT GCACAGTG AGGCGAAGTG chrX:12015036-12015156 108 4.90e-05 CAGCTGCAAC GCACAGTG GAACC chrX:11885428-11885548 28 4.90e-05 AAGTGACGTC GCACAGTG GCCGGAAATC chr3R:24231212-24231332 102 4.90e-05 GTGTGCAAAG GCACAGTG AAAGAATGCG chrX:3950248-3950368 7 4.90e-05 GAGCTC GCACAGTG GGTGCGACAA chr3R:26536799-26536919 16 4.90e-05 ATACGCCGCT GCACAGTG GCACAAAAAC chrX:10600599-10600719 71 4.90e-05 TGAAGACACG CCACAGTG AATTGCAAAT chr2L:9496628-9496748 49 4.90e-05 GCCTCACTGC GCACAGTG GGACTAGAAA chr2L:19756837-19756957 89 4.90e-05 AGCGGTGGGG CCACAGTG ACCAGCTATC chr3R:19903479-19903599 34 4.90e-05 GCCGCGCAAC GCACAGTG GAACACAAAG chr2L:1427860-1427980 44 4.90e-05 GTGGCCCATC GCACAGTG GGACGAAAGT chrX:1858930-1859050 92 4.90e-05 AAGAATCCAT GCACAGTG GGTACTACTT chr2L:7544474-7544594 33 4.90e-05 CGATCGCGTC GCACAGTG GGCTGAAGAG chrX:18516134-18516254 45 4.90e-05 TTAGTGTTGT GCACAGTG ATGCCAAACT chr3R:31060309-31060429 39 4.90e-05 AAACTTGAAC GCACAGTG GAACAAATTC chr2L:8084930-8085050 62 4.90e-05 GCGATCGCGG GCACAGTG GGTTGCAATC chr2R:6635977-6636097 81 4.90e-05 GCACATGTGT GCACAGTG TAGCCAAATC chr3L:15234603-15234723 57 4.90e-05 CACATAGTGC GCACAGTG GGCCCAAATC chr3R:26967799-26967919 106 4.90e-05 AAAAGTGGAT CCACAGTG CTGGCCA chr3L:12485095-12485215 54 4.90e-05 TGTTGGCCGT GCACAGTG GTCTGGAACC chr3R:17072717-17072837 30 7.26e-05 TGCCAGACTG GCAGTGTG ATGTAATTTG chr3L:21216816-21216936 86 7.26e-05 GGCAACGCGA GCAGTGTG TTAAATATTT chr3R:22547744-22547864 64 7.26e-05 TGTGTTTTTT CCAGTGTG ACTGCAAGCG chr2L:8030943-8031063 14 7.26e-05 CACCAGTGTG CCAGTGTG TGTGTGTTTT chr2R:24186670-24186790 35 7.26e-05 TGGATTTATC GCAGTGTG TTTGTCTGCC chr3R:5758953-5759073 3 9.61e-05 CA CCAGAGTG ACCATTTGAG chr2R:7418690-7418810 87 1.17e-04 TTGTCGATTG GCACCGTG TGTCAAATTC chr3L:11358827-11358947 52 1.17e-04 ACAGAGGGCG CCACCGTG GCCCAACGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACWGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2177792-2177912 2.5e-05 70_[+1]_42 chr3L:19041928-19042048 2.5e-05 67_[+1]_45 chr2L:10428695-10428815 2.5e-05 45_[+1]_67 chrX:12574682-12574802 2.5e-05 76_[+1]_36 chr2R:8733449-8733569 2.5e-05 105_[+1]_7 chrX:5517071-5517191 2.5e-05 31_[+1]_81 chr3L:8827265-8827385 2.5e-05 83_[+1]_29 chr2L:10967362-10967482 2.5e-05 24_[+1]_88 chr3R:6761003-6761123 2.5e-05 54_[+1]_58 chr3R:17777042-17777162 2.5e-05 94_[+1]_18 chrX:15709877-15709997 2.5e-05 5_[+1]_107 chr3R:5599634-5599754 2.5e-05 110_[+1]_2 chr3L:9678208-9678328 2.5e-05 48_[+1]_64 chr2L:3770255-3770375 2.5e-05 35_[+1]_77 chr3R:29725679-29725799 2.5e-05 41_[+1]_71 chr2R:8051336-8051456 2.5e-05 62_[+1]_50 chr2R:11593279-11593399 2.5e-05 103_[+1]_9 chrX:7735318-7735438 2.5e-05 62_[+1]_50 chr2L:2364295-2364415 2.5e-05 75_[+1]_37 chr3L:10320897-10321017 2.5e-05 45_[+1]_67 chr3R:13065274-13065394 2.5e-05 42_[+1]_70 chr3R:11351545-11351665 2.5e-05 62_[+1]_50 chr2R:6757178-6757298 4.9e-05 55_[+1]_57 chr2R:8928079-8928199 4.9e-05 41_[+1]_71 chr3R:27937874-27937994 4.9e-05 80_[+1]_32 chrX:12015036-12015156 4.9e-05 107_[+1]_5 chrX:11885428-11885548 4.9e-05 27_[+1]_85 chr3R:24231212-24231332 4.9e-05 101_[+1]_11 chrX:3950248-3950368 4.9e-05 6_[+1]_106 chr3R:26536799-26536919 4.9e-05 15_[+1]_97 chrX:10600599-10600719 4.9e-05 70_[+1]_42 chr2L:9496628-9496748 4.9e-05 48_[+1]_64 chr2L:19756837-19756957 4.9e-05 88_[+1]_24 chr3R:19903479-19903599 4.9e-05 33_[+1]_79 chr2L:1427860-1427980 4.9e-05 43_[+1]_69 chrX:1858930-1859050 4.9e-05 91_[+1]_21 chr2L:7544474-7544594 4.9e-05 32_[+1]_80 chrX:18516134-18516254 4.9e-05 44_[+1]_68 chr3R:31060309-31060429 4.9e-05 38_[+1]_74 chr2L:8084930-8085050 4.9e-05 61_[+1]_51 chr2R:6635977-6636097 4.9e-05 80_[+1]_32 chr3L:15234603-15234723 4.9e-05 56_[+1]_56 chr3R:26967799-26967919 4.9e-05 105_[+1]_7 chr3L:12485095-12485215 4.9e-05 53_[+1]_59 chr3R:17072717-17072837 7.3e-05 29_[+1]_83 chr3L:21216816-21216936 7.3e-05 85_[+1]_27 chr3R:22547744-22547864 7.3e-05 63_[+1]_49 chr2L:8030943-8031063 7.3e-05 13_[+1]_99 chr2R:24186670-24186790 7.3e-05 34_[+1]_78 chr3R:5758953-5759073 9.6e-05 2_[+1]_110 chr2R:7418690-7418810 0.00012 86_[+1]_26 chr3L:11358827-11358947 0.00012 51_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACWGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCACWGTG width=8 seqs=52 chr2L:2177792-2177912 ( 71) GCACTGTG 1 chr3L:19041928-19042048 ( 68) CCACTGTG 1 chr2L:10428695-10428815 ( 46) GCACTGTG 1 chrX:12574682-12574802 ( 77) CCACTGTG 1 chr2R:8733449-8733569 ( 106) CCACTGTG 1 chrX:5517071-5517191 ( 32) CCACTGTG 1 chr3L:8827265-8827385 ( 84) CCACTGTG 1 chr2L:10967362-10967482 ( 25) CCACTGTG 1 chr3R:6761003-6761123 ( 55) CCACTGTG 1 chr3R:17777042-17777162 ( 95) CCACTGTG 1 chrX:15709877-15709997 ( 6) CCACTGTG 1 chr3R:5599634-5599754 ( 111) CCACTGTG 1 chr3L:9678208-9678328 ( 49) CCACTGTG 1 chr2L:3770255-3770375 ( 36) CCACTGTG 1 chr3R:29725679-29725799 ( 42) GCACTGTG 1 chr2R:8051336-8051456 ( 63) CCACTGTG 1 chr2R:11593279-11593399 ( 104) CCACTGTG 1 chrX:7735318-7735438 ( 63) CCACTGTG 1 chr2L:2364295-2364415 ( 76) CCACTGTG 1 chr3L:10320897-10321017 ( 46) CCACTGTG 1 chr3R:13065274-13065394 ( 43) CCACTGTG 1 chr3R:11351545-11351665 ( 63) CCACTGTG 1 chr2R:6757178-6757298 ( 56) GCACAGTG 1 chr2R:8928079-8928199 ( 42) GCACAGTG 1 chr3R:27937874-27937994 ( 81) GCACAGTG 1 chrX:12015036-12015156 ( 108) GCACAGTG 1 chrX:11885428-11885548 ( 28) GCACAGTG 1 chr3R:24231212-24231332 ( 102) GCACAGTG 1 chrX:3950248-3950368 ( 7) GCACAGTG 1 chr3R:26536799-26536919 ( 16) GCACAGTG 1 chrX:10600599-10600719 ( 71) CCACAGTG 1 chr2L:9496628-9496748 ( 49) GCACAGTG 1 chr2L:19756837-19756957 ( 89) CCACAGTG 1 chr3R:19903479-19903599 ( 34) GCACAGTG 1 chr2L:1427860-1427980 ( 44) GCACAGTG 1 chrX:1858930-1859050 ( 92) GCACAGTG 1 chr2L:7544474-7544594 ( 33) GCACAGTG 1 chrX:18516134-18516254 ( 45) GCACAGTG 1 chr3R:31060309-31060429 ( 39) GCACAGTG 1 chr2L:8084930-8085050 ( 62) GCACAGTG 1 chr2R:6635977-6636097 ( 81) GCACAGTG 1 chr3L:15234603-15234723 ( 57) GCACAGTG 1 chr3R:26967799-26967919 ( 106) CCACAGTG 1 chr3L:12485095-12485215 ( 54) GCACAGTG 1 chr3R:17072717-17072837 ( 30) GCAGTGTG 1 chr3L:21216816-21216936 ( 86) GCAGTGTG 1 chr3R:22547744-22547864 ( 64) CCAGTGTG 1 chr2L:8030943-8031063 ( 14) CCAGTGTG 1 chr2R:24186670-24186790 ( 35) GCAGTGTG 1 chr3R:5758953-5759073 ( 3) CCAGAGTG 1 chr2R:7418690-7418810 ( 87) GCACCGTG 1 chr3L:11358827-11358947 ( 52) CCACCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACWGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2487 E= 6.6e-035 -1234 111 117 -1234 -1234 211 -1234 -1234 187 -1234 -1234 -1234 -1234 194 -94 -1234 69 -258 -1234 92 -1234 -1234 217 -1234 -1234 -1234 -1234 187 -1234 -1234 217 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACWGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 6.6e-035 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.884615 0.115385 0.000000 0.442308 0.038462 0.000000 0.519231 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACWGTG MEME-1 regular expression -------------------------------------------------------------------------------- [CG]CAC[TA]GTG -------------------------------------------------------------------------------- Time 7.57 secs. ******************************************************************************** ******************************************************************************** MOTIF HATCGATA MEME-2 width = 8 sites = 25 llr = 230 E-value = 6.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif HATCGATA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3a:::a:8 pos.-specific C 2::a:::: probability G ::::a::2 matrix T 4:a:::a: bits 2.2 ** 2.0 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (13.3 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HATCGATA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23856892-23857012 36 2.17e-05 AGGCGATACT TATCGATA GCTTTGCTAT chr2R:22374999-22375119 50 2.17e-05 AGCCCTAGCA TATCGATA GCACGTAGCG chr3R:4714087-4714207 96 2.17e-05 GAAAAGGGCC TATCGATA GTGCGGGTGG chr2L:15039422-15039542 73 2.17e-05 CCTATCGGAC TATCGATA CAACATCAAC chr3R:4319577-4319697 43 2.17e-05 GAGCAGCAGG TATCGATA ATCGCAACAA chrX:16446910-16447030 89 2.17e-05 ACAGTGGTGT TATCGATA TTTAATTGCG chr3R:11581522-11581642 34 2.17e-05 CTCTACAAAG TATCGATA ACTTCAGCGA chr2R:18660567-18660687 99 2.17e-05 ACAGCTTACT TATCGATA AAAGTATTTC chr2L:19756837-19756957 103 2.17e-05 AGTGACCAGC TATCGATA GCAGTTCTAT chr3L:21318011-21318131 15 4.34e-05 TCATGTAAAC AATCGATA GTGCTGCGAG chr2R:9989023-9989143 90 4.34e-05 CGCAGCGTGT AATCGATA TTTTCTAAGC chr2L:283187-283307 107 4.34e-05 TTTAAAGCCA AATCGATA TGATAG chr3L:9836712-9836832 113 4.34e-05 GATTACATTT AATCGATA chr3R:17002367-17002487 23 6.17e-05 TTGCCACCGC CATCGATA GTTTTCTTAC chr3L:21216816-21216936 33 6.17e-05 TGGTGTATGT CATCGATA CCACGATACA chr3R:27937874-27937994 7 6.17e-05 TCGATC CATCGATA CGATCGCTGA chr2R:21183250-21183370 21 6.17e-05 TGTTTTGATG CATCGATA ACAACAAAAA chr2L:5724581-5724701 40 6.17e-05 tagataaata catcgata gTATCGGCTT chr2R:9692447-9692567 5 6.17e-05 GATT CATCGATA TCTCCGCCGG chr2R:6757178-6757298 110 7.93e-05 CAGTCACTCC TATCGATG CTC chr3L:18673137-18673257 52 7.93e-05 CGTTCGATAG TATCGATG CCGCTTGGGC chrX:16547538-16547658 18 9.69e-05 GATTACTGTA AATCGATG TTAATCGAAA chr2R:6741981-6742101 83 9.69e-05 GTGGCACCGG AATCGATG CGACCAGCAG chrX:9608777-9608897 109 9.69e-05 GATGGGCATA AATCGATG CAAC chr3R:18243734-18243854 51 9.69e-05 TGCTGCGAAA AATCGATG AATGAATCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HATCGATA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23856892-23857012 2.2e-05 35_[+2]_77 chr2R:22374999-22375119 2.2e-05 49_[+2]_63 chr3R:4714087-4714207 2.2e-05 95_[+2]_17 chr2L:15039422-15039542 2.2e-05 72_[+2]_40 chr3R:4319577-4319697 2.2e-05 42_[+2]_70 chrX:16446910-16447030 2.2e-05 88_[+2]_24 chr3R:11581522-11581642 2.2e-05 33_[+2]_79 chr2R:18660567-18660687 2.2e-05 98_[+2]_14 chr2L:19756837-19756957 2.2e-05 102_[+2]_10 chr3L:21318011-21318131 4.3e-05 14_[+2]_98 chr2R:9989023-9989143 4.3e-05 89_[+2]_23 chr2L:283187-283307 4.3e-05 106_[+2]_6 chr3L:9836712-9836832 4.3e-05 112_[+2] chr3R:17002367-17002487 6.2e-05 22_[+2]_90 chr3L:21216816-21216936 6.2e-05 32_[+2]_80 chr3R:27937874-27937994 6.2e-05 6_[+2]_106 chr2R:21183250-21183370 6.2e-05 20_[+2]_92 chr2L:5724581-5724701 6.2e-05 39_[+2]_73 chr2R:9692447-9692567 6.2e-05 4_[+2]_108 chr2R:6757178-6757298 7.9e-05 109_[+2]_3 chr3L:18673137-18673257 7.9e-05 51_[+2]_61 chrX:16547538-16547658 9.7e-05 17_[+2]_95 chr2R:6741981-6742101 9.7e-05 82_[+2]_30 chrX:9608777-9608897 9.7e-05 108_[+2]_4 chr3R:18243734-18243854 9.7e-05 50_[+2]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HATCGATA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HATCGATA width=8 seqs=25 chr2R:23856892-23857012 ( 36) TATCGATA 1 chr2R:22374999-22375119 ( 50) TATCGATA 1 chr3R:4714087-4714207 ( 96) TATCGATA 1 chr2L:15039422-15039542 ( 73) TATCGATA 1 chr3R:4319577-4319697 ( 43) TATCGATA 1 chrX:16446910-16447030 ( 89) TATCGATA 1 chr3R:11581522-11581642 ( 34) TATCGATA 1 chr2R:18660567-18660687 ( 99) TATCGATA 1 chr2L:19756837-19756957 ( 103) TATCGATA 1 chr3L:21318011-21318131 ( 15) AATCGATA 1 chr2R:9989023-9989143 ( 90) AATCGATA 1 chr2L:283187-283307 ( 107) AATCGATA 1 chr3L:9836712-9836832 ( 113) AATCGATA 1 chr3R:17002367-17002487 ( 23) CATCGATA 1 chr3L:21216816-21216936 ( 33) CATCGATA 1 chr3R:27937874-27937994 ( 7) CATCGATA 1 chr2R:21183250-21183370 ( 21) CATCGATA 1 chr2L:5724581-5724701 ( 40) CATCGATA 1 chr2R:9692447-9692567 ( 5) CATCGATA 1 chr2R:6757178-6757298 ( 110) TATCGATG 1 chr3L:18673137-18673257 ( 52) TATCGATG 1 chrX:16547538-16547658 ( 18) AATCGATG 1 chr2R:6741981-6742101 ( 83) AATCGATG 1 chrX:9608777-9608897 ( 109) AATCGATG 1 chr3R:18243734-18243854 ( 51) AATCGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HATCGATA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.84894 E= 6.7e+000 23 6 -1129 68 187 -1129 -1129 -1129 -1129 -1129 -1129 187 -1129 211 -1129 -1129 -1129 -1129 217 -1129 187 -1129 -1129 -1129 -1129 -1129 -1129 187 147 -1129 11 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HATCGATA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 6.7e+000 0.320000 0.240000 0.000000 0.440000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.760000 0.000000 0.240000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HATCGATA MEME-2 regular expression -------------------------------------------------------------------------------- [TAC]ATCGAT[AG] -------------------------------------------------------------------------------- Time 13.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTT MEME-3 width = 8 sites = 9 llr = 100 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::a:::: probability G ::a::a:: matrix T ::::a:aa bits 2.2 * ** * 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19887323-19887443 2 1.48e-05 T CAGCTGTT CGAATTGGCG chr3L:1647403-1647523 37 1.48e-05 CAATACACAA CAGCTGTT TAATGTGCCC chrX:12574682-12574802 95 1.48e-05 CAGGCTCACA CAGCTGTT TTTTTTTTGT chr2L:8437341-8437461 69 1.48e-05 ACTGTTCAGC CAGCTGTT TACTCTTTAC chr2L:7043203-7043323 13 1.48e-05 AAAAAAAAGC CAGCTGTT TGCCGATGTT chrX:13088250-13088370 81 1.48e-05 ACGCGGTTCA CAGCTGTT AATACCACTG chr2L:21263609-21263729 111 1.48e-05 GCTATATAAT CAGCTGTT TG chr3L:8175918-8176038 23 1.48e-05 AACACAAGTG CAGCTGTT TTGCTTAGCG chr3R:31805357-31805477 16 1.48e-05 AACCACCGAA CAGCTGTT CGCCCAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19887323-19887443 1.5e-05 1_[+3]_111 chr3L:1647403-1647523 1.5e-05 36_[+3]_76 chrX:12574682-12574802 1.5e-05 94_[+3]_18 chr2L:8437341-8437461 1.5e-05 68_[+3]_44 chr2L:7043203-7043323 1.5e-05 12_[+3]_100 chrX:13088250-13088370 1.5e-05 80_[+3]_32 chr2L:21263609-21263729 1.5e-05 110_[+3]_2 chr3L:8175918-8176038 1.5e-05 22_[+3]_90 chr3R:31805357-31805477 1.5e-05 15_[+3]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTT width=8 seqs=9 chrX:19887323-19887443 ( 2) CAGCTGTT 1 chr3L:1647403-1647523 ( 37) CAGCTGTT 1 chrX:12574682-12574802 ( 95) CAGCTGTT 1 chr2L:8437341-8437461 ( 69) CAGCTGTT 1 chr2L:7043203-7043323 ( 13) CAGCTGTT 1 chrX:13088250-13088370 ( 81) CAGCTGTT 1 chr2L:21263609-21263729 ( 111) CAGCTGTT 1 chr3L:8175918-8176038 ( 23) CAGCTGTT 1 chr3R:31805357-31805477 ( 16) CAGCTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 1.2e+003 -982 211 -982 -982 187 -982 -982 -982 -982 -982 217 -982 -982 211 -982 -982 -982 -982 -982 187 -982 -982 217 -982 -982 -982 -982 187 -982 -982 -982 187 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTT MEME-3 regular expression -------------------------------------------------------------------------------- CAGCTGTT -------------------------------------------------------------------------------- Time 20.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CGAGCGGG MEME-4 width = 8 sites = 4 llr = 47 E-value = 7.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGAGCGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C a:::a::: probability G :a:a:aaa matrix T :::::::: bits 2.2 ** ***** 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGAGCGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGCGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8030943-8031063 104 7.88e-06 TGCGCGAGTG CGAGCGGG AAAAAGGCT chrX:16446910-16447030 45 7.88e-06 CAATTTCTGC CGAGCGGG CGCAAGAAGA chr3R:29064954-29065074 62 7.88e-06 TCATCACTCT CGAGCGGG GAAAAGAGAA chr2L:4333921-4334041 51 7.88e-06 CTTCTGCGGT CGAGCGGG ATTTTCGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGCGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8030943-8031063 7.9e-06 103_[+4]_9 chrX:16446910-16447030 7.9e-06 44_[+4]_68 chr3R:29064954-29065074 7.9e-06 61_[+4]_51 chr2L:4333921-4334041 7.9e-06 50_[+4]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGCGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGAGCGGG width=8 seqs=4 chr2L:8030943-8031063 ( 104) CGAGCGGG 1 chrX:16446910-16447030 ( 45) CGAGCGGG 1 chr3R:29064954-29065074 ( 62) CGAGCGGG 1 chr2L:4333921-4334041 ( 51) CGAGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGCGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 7.8e+004 -865 211 -865 -865 -865 -865 217 -865 187 -865 -865 -865 -865 -865 217 -865 -865 211 -865 -865 -865 -865 217 -865 -865 -865 217 -865 -865 -865 217 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGCGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 7.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGAGCGGG MEME-4 regular expression -------------------------------------------------------------------------------- CGAGCGGG -------------------------------------------------------------------------------- Time 26.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GATGGGCG MEME-5 width = 8 sites = 4 llr = 46 E-value = 2.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C ::::::a: probability G a::aaa:a matrix T ::a::::: bits 2.2 * ***** 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GATGGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1295827-1295947 2 9.35e-06 C GATGGGCG GCTACTTAAA chr3R:5758953-5759073 86 9.35e-06 ATTTTGTAGA GATGGGCG TTCTATTCTA chr2R:7989651-7989771 8 9.35e-06 AATCCCG GATGGGCG TGTGGCACGG chr2R:7246940-7247060 59 9.35e-06 CTTCACATGT GATGGGCG CATGTTGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1295827-1295947 9.4e-06 1_[+5]_111 chr3R:5758953-5759073 9.4e-06 85_[+5]_27 chr2R:7989651-7989771 9.4e-06 7_[+5]_105 chr2R:7246940-7247060 9.4e-06 58_[+5]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGGGCG width=8 seqs=4 chr3L:1295827-1295947 ( 2) GATGGGCG 1 chr3R:5758953-5759073 ( 86) GATGGGCG 1 chr2R:7989651-7989771 ( 8) GATGGGCG 1 chr2R:7246940-7247060 ( 59) GATGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 2.2e+005 -865 -865 217 -865 187 -865 -865 -865 -865 -865 -865 187 -865 -865 217 -865 -865 -865 217 -865 -865 -865 217 -865 -865 211 -865 -865 -865 -865 217 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.2e+005 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGGCG MEME-5 regular expression -------------------------------------------------------------------------------- GATGGGCG -------------------------------------------------------------------------------- Time 32.55 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11351545-11351665 1.53e-01 62_[+1(2.45e-05)]_50 chr3R:13065274-13065394 6.27e-02 42_[+1(2.45e-05)]_70 chr3R:26036142-26036262 8.94e-01 120 chr3L:10320897-10321017 1.28e-01 45_[+1(2.45e-05)]_67 chr2L:2364295-2364415 4.31e-02 6_[+1(9.61e-05)]_61_[+1(2.45e-05)]_\ 37 chr3L:12485095-12485215 2.93e-02 53_[+1(4.90e-05)]_59 chrX:7735318-7735438 5.36e-02 62_[+1(2.45e-05)]_50 chr3R:26967799-26967919 1.02e-02 9_[+5(5.90e-05)]_88_[+1(4.90e-05)]_\ 7 chr2R:11593279-11593399 1.50e-02 103_[+1(2.45e-05)]_9 chr3R:6406376-6406496 4.19e-01 120 chr2R:8051336-8051456 3.04e-02 62_[+1(2.45e-05)]_50 chr3R:31805357-31805477 1.94e-02 15_[+3(1.48e-05)]_97 chr3R:29725679-29725799 1.57e-01 41_[+1(2.45e-05)]_71 chr2L:8545666-8545786 9.64e-01 120 chr3L:8175918-8176038 3.11e-02 22_[+3(1.48e-05)]_90 chr3L:15234603-15234723 1.60e-03 56_[+1(4.90e-05)]_56 chr2L:3770255-3770375 1.29e-01 35_[+1(2.45e-05)]_77 chr2R:6635977-6636097 6.69e-02 80_[+1(4.90e-05)]_32 chr2L:8084930-8085050 2.36e-02 61_[+1(4.90e-05)]_51 chr3R:21643326-21643446 9.95e-01 120 chr3R:20949986-20950106 6.44e-01 120 chr3L:9678208-9678328 2.22e-02 48_[+1(2.45e-05)]_64 chr3R:31060309-31060429 2.49e-02 38_[+1(4.90e-05)]_74 chr3R:5599634-5599754 4.83e-02 110_[+1(2.45e-05)]_2 chr2L:21263609-21263729 3.43e-02 110_[+3(1.48e-05)]_2 chr3L:9504982-9505102 2.23e-01 120 chr2R:18133961-18134081 1.90e-01 120 chrX:18516134-18516254 1.95e-01 44_[+1(4.90e-05)]_68 chr3R:15286175-15286295 3.12e-01 120 chr3R:5104457-5104577 5.83e-01 120 chrX:15709877-15709997 1.73e-02 5_[+1(2.45e-05)]_11_[+1(2.45e-05)]_\ 88 chr2L:21308402-21308522 2.95e-01 120 chr3L:21540090-21540210 3.51e-01 120 chr2R:7586844-7586964 2.96e-01 120 chr3L:3320125-3320245 1.86e-01 120 chr2L:5044360-5044480 7.81e-01 120 chr2L:7544474-7544594 1.54e-01 32_[+1(4.90e-05)]_80 chr2R:6811479-6811599 7.32e-03 24_[+4(2.88e-05)]_88 chrX:1858930-1859050 1.49e-02 31_[+1(7.26e-05)]_52_[+1(4.90e-05)]_\ 21 chr3R:17777042-17777162 7.94e-02 94_[+1(2.45e-05)]_18 chr2L:1427860-1427980 1.58e-01 43_[+1(4.90e-05)]_69 chr2L:5987103-5987223 6.34e-01 120 chr2L:4387007-4387127 1.65e-02 120 chr2R:24571638-24571758 4.42e-02 46_[+5(9.01e-05)]_66 chr3L:9358764-9358884 3.91e-01 120 chr3R:21657250-21657370 1.33e-02 120 chr3R:25662255-25662375 4.55e-01 120 chr3L:14972746-14972866 9.93e-01 120 chr3L:16050033-16050153 9.57e-01 120 chr3R:28634972-28635092 4.24e-02 120 chr3R:19903479-19903599 1.41e-01 33_[+1(4.90e-05)]_79 chr3L:1298800-1298920 1.42e-01 120 chr2L:19756837-19756957 8.26e-04 88_[+1(4.90e-05)]_6_[+2(2.17e-05)]_\ 10 chr3L:1549242-1549362 4.79e-01 120 chr2R:24411759-24411879 9.52e-01 120 chr2R:5693182-5693302 7.41e-01 120 chr3L:1575904-1576024 9.50e-01 120 chr3R:6100925-6101045 8.15e-01 120 chrX:13088250-13088370 1.81e-02 80_[+3(1.48e-05)]_32 chr3L:639721-639841 7.60e-01 120 chr2R:8725808-8725928 8.19e-01 120 chr2R:11892645-11892765 3.50e-01 120 chr3R:18243734-18243854 1.13e-01 50_[+2(9.69e-05)]_62 chr3R:14285948-14286068 5.50e-01 120 chr2L:4333921-4334041 2.82e-02 50_[+4(7.88e-06)]_62 chr2R:18660567-18660687 1.12e-01 98_[+2(2.17e-05)]_14 chr3R:31745680-31745800 1.58e-01 120 chr3L:224226-224346 2.44e-01 120 chr3R:6761003-6761123 1.40e-01 54_[+1(2.45e-05)]_24_[+1(7.26e-05)]_\ 26 chr3L:17005079-17005199 6.47e-01 120 chr2R:10077628-10077748 9.27e-01 120 chr2R:16338320-16338440 2.78e-01 120 chr2L:9699209-9699329 8.44e-01 120 chr2L:6948786-6948906 3.52e-01 120 chr3R:10677674-10677794 8.15e-01 120 chr2L:9496628-9496748 2.15e-01 48_[+1(4.90e-05)]_64 chr2R:14009153-14009273 5.05e-01 120 chr3L:21281171-21281291 2.20e-01 120 chr3L:9836712-9836832 6.47e-02 112_[+2(4.34e-05)] chr2R:14219871-14219991 4.92e-01 120 chrX:10600599-10600719 5.63e-02 70_[+1(4.90e-05)]_42 chr2R:7246940-7247060 1.07e-02 58_[+5(9.35e-06)]_54 chr3R:26536799-26536919 7.59e-02 15_[+1(4.90e-05)]_97 chrX:3950248-3950368 1.20e-01 6_[+1(4.90e-05)]_106 chr3R:19648718-19648838 3.71e-01 120 chr3R:13064265-13064385 4.36e-01 120 chrX:9156508-9156628 9.65e-01 120 chr3L:10682077-10682197 4.68e-01 120 chr3R:26035393-26035513 7.96e-01 120 chr2L:13165612-13165732 9.95e-01 120 chr2L:10967362-10967482 1.66e-03 24_[+1(2.45e-05)]_88 chrX:8606309-8606429 1.42e-01 120 chr3L:22871020-22871140 3.29e-01 120 chr3L:10860189-10860309 4.70e-01 120 chr3R:24231212-24231332 4.13e-02 101_[+1(4.90e-05)]_11 chr3L:11419476-11419596 4.37e-01 120 chr2R:6015708-6015828 6.13e-01 120 chr2L:9437428-9437548 4.66e-01 120 chr3L:11789992-11790112 4.73e-02 28_[+2(4.34e-05)]_12_[+2(7.93e-05)]_\ 64 chrX:9106610-9106730 5.98e-01 120 chr3L:12804952-12805072 7.64e-01 120 chr3L:11358827-11358947 1.44e-01 120 chr3R:29064954-29065074 2.41e-02 61_[+4(7.88e-06)]_51 chr2R:19292020-19292140 4.77e-01 120 chr2R:22401992-22402112 5.14e-01 120 chr2R:9692447-9692567 3.98e-02 4_[+2(6.17e-05)]_108 chr2L:5724581-5724701 6.20e-02 39_[+2(6.17e-05)]_73 chr3R:9240060-9240180 9.50e-01 120 chr2L:11829387-11829507 7.60e-02 120 chrX:11885428-11885548 7.46e-02 27_[+1(4.90e-05)]_85 chr3L:1188916-1189036 3.07e-01 120 chr2R:16150114-16150234 1.38e-01 120 chr3L:13922399-13922519 9.99e-01 120 chr2R:7245400-7245520 6.77e-02 120 chrX:13755229-13755349 9.13e-01 120 chr3R:26121994-26122114 4.45e-01 120 chrX:9608777-9608897 5.95e-02 108_[+2(9.69e-05)]_4 chr2R:15147773-15147893 1.27e-01 120 chr3R:18215411-18215531 6.89e-01 120 chr3L:19140471-19140591 7.91e-01 120 chr3L:21196720-21196840 1.27e-01 120 chr3R:26005929-26006049 4.52e-01 120 chrX:6756540-6756660 3.34e-01 120 chr2R:21183250-21183370 1.17e-01 20_[+2(6.17e-05)]_92 chr3R:30802306-30802426 2.13e-01 120 chr3R:9054343-9054463 8.28e-01 120 chr2L:283187-283307 2.15e-02 106_[+2(4.34e-05)]_6 chr3L:7359959-7360079 7.51e-02 120 chrX:21323969-21324089 3.51e-02 60_[+2(7.93e-05)]_52 chr2R:17564697-17564817 9.94e-01 120 chr2L:15254330-15254450 9.99e-01 120 chr2R:15934666-15934786 2.36e-01 120 chr2R:9989023-9989143 2.65e-02 89_[+2(4.34e-05)]_12_[+2(9.69e-05)]_\ 3 chr3L:3811175-3811295 7.02e-01 120 chr3R:20832966-20833086 1.26e-01 120 chr3R:23293202-23293322 6.34e-01 120 chr3R:11581522-11581642 4.08e-02 33_[+2(2.17e-05)]_79 chr2L:21629305-21629425 2.84e-01 120 chrX:12015036-12015156 1.98e-02 107_[+1(4.90e-05)]_5 chr3L:11833418-11833538 4.55e-01 120 chrX:16446910-16447030 6.46e-04 44_[+4(7.88e-06)]_36_[+2(2.17e-05)]_\ 24 chr3R:27937874-27937994 1.94e-03 6_[+2(6.17e-05)]_66_[+1(4.90e-05)]_\ 32 chr2R:7418690-7418810 9.95e-02 120 chr2L:7306912-7307032 7.67e-01 120 chr2L:19576611-19576731 9.35e-01 120 chrX:15860608-15860728 3.01e-01 120 chr2R:17458602-17458722 9.45e-01 120 chr3R:25740498-25740618 9.21e-01 120 chr2R:7989651-7989771 5.80e-03 7_[+5(9.35e-06)]_105 chr3L:9899220-9899340 9.98e-01 120 chr2L:7043203-7043323 2.35e-02 12_[+3(1.48e-05)]_100 chr3R:26566992-26567112 3.63e-01 120 chr2L:108135-108255 3.84e-01 120 chr2R:24186670-24186790 5.94e-02 34_[+1(7.26e-05)]_78 chr2R:7249134-7249254 6.02e-01 120 chr3R:6893184-6893304 5.05e-01 120 chr2L:8437341-8437461 3.25e-03 68_[+3(1.48e-05)]_44 chr3L:21318011-21318131 9.35e-02 14_[+2(4.34e-05)]_98 chr3L:17597074-17597194 8.83e-01 120 chr3L:14002904-14003024 8.02e-01 120 chr2R:6741981-6742101 3.64e-02 82_[+2(9.69e-05)]_30 chr3R:12406522-12406642 1.20e-01 120 chr2L:8030943-8031063 1.44e-03 5_[+1(7.26e-05)]_[+1(7.26e-05)]_82_\ [+4(7.88e-06)]_9 chr2R:18774899-18775019 3.37e-01 120 chr3L:8827265-8827385 1.34e-01 83_[+1(2.45e-05)]_29 chr3L:20922601-20922721 9.21e-01 120 chrX:5517071-5517191 7.48e-02 31_[+1(2.45e-05)]_81 chr2R:17062595-17062715 5.63e-01 120 chr3L:14028945-14029065 5.29e-02 120 chr3L:8440869-8440989 9.34e-01 120 chr2R:6636188-6636308 5.43e-01 120 chr3R:16431794-16431914 5.42e-01 120 chr3R:18663584-18663704 8.35e-01 120 chr2R:8733449-8733569 2.22e-02 105_[+1(2.45e-05)]_7 chrX:12574682-12574802 2.77e-03 76_[+1(2.45e-05)]_10_[+3(1.48e-05)]_\ 18 chr3R:4319577-4319697 1.19e-02 42_[+2(2.17e-05)]_70 chrX:3719853-3719973 4.49e-01 120 chr2L:12467874-12467994 7.44e-02 120 chr3R:15472763-15472883 8.50e-01 120 chr2L:73277-73397 8.33e-02 120 chr3L:18673137-18673257 2.20e-03 51_[+2(7.93e-05)]_61 chr2R:16551949-16552069 9.36e-01 120 chr2L:15039422-15039542 5.72e-02 72_[+2(2.17e-05)]_40 chr2R:8928079-8928199 9.89e-02 41_[+1(4.90e-05)]_71 chr3R:5086933-5087053 9.98e-01 120 chr3R:9039028-9039148 9.98e-01 120 chr3L:17846354-17846474 9.62e-01 120 chrX:11621971-11622091 2.27e-01 120 chr3R:9055142-9055262 8.69e-01 120 chr3R:15287860-15287980 4.15e-01 120 chrX:16547538-16547658 6.71e-02 17_[+2(9.69e-05)]_95 chr3L:18114504-18114624 9.29e-02 28_[+5(5.90e-05)]_84 chr3L:21049669-21049789 9.29e-01 120 chr3R:4714087-4714207 2.76e-03 95_[+2(2.17e-05)]_17 chr2L:10428695-10428815 1.12e-02 45_[+1(2.45e-05)]_67 chr2R:17161030-17161150 4.44e-01 120 chr3L:22065806-22065926 3.46e-01 120 chrX:3811509-3811629 4.54e-01 120 chr3R:18242663-18242783 8.48e-01 120 chr3R:10350051-10350171 9.52e-01 120 chrX:4530103-4530223 5.40e-01 120 chrX:7307701-7307821 9.32e-01 120 chr2R:6132301-6132421 1.34e-01 120 chr3R:22547744-22547864 1.93e-02 63_[+1(7.26e-05)]_49 chr3L:1647403-1647523 2.63e-02 36_[+3(1.48e-05)]_76 chr3L:11120718-11120838 8.26e-01 120 chrX:14602672-14602792 6.12e-01 120 chr3R:20555906-20556026 4.50e-01 120 chr3R:14656957-14657077 8.53e-01 120 chr2R:13854264-13854384 4.03e-01 120 chr2R:22374999-22375119 3.45e-02 49_[+2(2.17e-05)]_63 chr2L:14094764-14094884 5.88e-01 120 chr2L:2376062-2376182 6.24e-01 120 chrX:19887323-19887443 3.41e-02 1_[+3(1.48e-05)]_111 chr3L:21216816-21216936 7.31e-04 32_[+2(6.17e-05)]_45_[+1(7.26e-05)]_\ 27 chr2L:11203725-11203845 2.51e-01 120 chr3L:7861057-7861177 8.87e-01 120 chrX:2012940-2013060 3.21e-01 120 chr3R:27273665-27273785 6.61e-01 120 chr3L:19041928-19042048 2.00e-01 67_[+1(2.45e-05)]_45 chrX:1370093-1370213 9.91e-01 120 chr2L:2858112-2858232 8.84e-01 120 chr3R:5758953-5759073 2.67e-03 2_[+1(9.61e-05)]_75_[+5(9.35e-06)]_\ 27 chr2L:10565811-10565931 9.97e-01 120 chrX:1517645-1517765 7.61e-01 120 chrX:14839850-14839970 2.31e-01 120 chr2L:20807962-20808082 4.15e-01 120 chr3R:8819840-8819960 3.92e-01 120 chrX:6524340-6524460 8.11e-02 120 chr3R:17002367-17002487 1.41e-01 22_[+2(6.17e-05)]_90 chr2R:23856892-23857012 6.23e-02 35_[+2(2.17e-05)]_77 chr3R:17072717-17072837 3.72e-01 29_[+1(7.26e-05)]_83 chr3R:30761364-30761484 7.77e-01 120 chrX:9152345-9152465 3.82e-01 120 chr3L:5769098-5769218 5.43e-01 120 chr2R:10559601-10559721 5.32e-01 120 chr2R:20832429-20832549 5.35e-01 120 chr3L:1295827-1295947 1.19e-02 1_[+5(9.35e-06)]_111 chr2L:18859273-18859393 9.05e-01 120 chr2L:2177792-2177912 1.89e-02 63_[+1(2.45e-05)]_49 chr3R:22664416-22664536 3.43e-01 120 chr2R:9881470-9881590 5.77e-01 120 chr2R:10819841-10819961 3.90e-01 120 chr2R:9110695-9110815 7.33e-01 120 chrX:11454511-11454631 5.02e-01 120 chr2R:7525606-7525726 7.77e-01 120 chr2R:6757178-6757298 8.97e-04 55_[+1(4.90e-05)]_46_[+2(7.93e-05)]_\ 3 chr3R:28887962-28888082 2.58e-02 62_[+2(6.17e-05)]_9_[+2(6.17e-05)]_\ 33 chr3L:18625953-18626073 9.17e-01 120 chr2R:23840039-23840159 5.64e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************