******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3919.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:10774245-10774365 1.0000 120 chr3R:16206281-16206401 1.0000 120 chr2L:7277151-7277271 1.0000 120 chr2R:11072659-11072779 1.0000 120 chr2R:14004777-14004897 1.0000 120 chr3L:14422225-14422345 1.0000 120 chr2R:18965368-18965488 1.0000 120 chr3R:18787376-18787496 1.0000 120 chr3R:23787456-23787576 1.0000 120 chr3R:8038024-8038144 1.0000 120 chr3L:5950626-5950746 1.0000 120 chr3R:22785048-22785168 1.0000 120 chr2L:13272676-13272796 1.0000 120 chr3R:24720599-24720719 1.0000 120 chr2R:13823806-13823926 1.0000 120 chr2R:9557579-9557699 1.0000 120 chr3L:15005211-15005331 1.0000 120 chr3L:4383255-4383375 1.0000 120 chr3L:2117127-2117247 1.0000 120 chr3L:13028786-13028906 1.0000 120 chr3R:15631027-15631147 1.0000 120 chrX:9485294-9485414 1.0000 120 chr3L:2636519-2636639 1.0000 120 chr3L:15217433-15217553 1.0000 120 chr3L:21080590-21080710 1.0000 120 chr3L:7264182-7264302 1.0000 120 chr2L:17380810-17380930 1.0000 120 chr3R:31768366-31768486 1.0000 120 chr2L:14624011-14624131 1.0000 120 chr2L:20721614-20721734 1.0000 120 chr3R:18998486-18998606 1.0000 120 chr2L:7175910-7176030 1.0000 120 chr3L:8372067-8372187 1.0000 120 chr2L:18348781-18348901 1.0000 120 chr3R:14432019-14432139 1.0000 120 chr2R:14031607-14031727 1.0000 120 chr3L:4707984-4708104 1.0000 120 chr3L:12030656-12030776 1.0000 120 chr2R:21470551-21470671 1.0000 120 chr3L:2796369-2796489 1.0000 120 chr3R:26096211-26096331 1.0000 120 chr3L:6371562-6371682 1.0000 120 chr3L:741873-741993 1.0000 120 chr3R:14007677-14007797 1.0000 120 chr3L:16974675-16974795 1.0000 120 chr2L:3582867-3582987 1.0000 120 chr3R:24996628-24996748 1.0000 120 chr2L:6463321-6463441 1.0000 120 chr3L:787790-787910 1.0000 120 chr2R:17407774-17407894 1.0000 120 chr3L:12058567-12058687 1.0000 120 chr3R:21944160-21944280 1.0000 120 chr2L:4361567-4361687 1.0000 120 chr2L:19905365-19905485 1.0000 120 chr3R:31680015-31680135 1.0000 120 chr3L:9419483-9419603 1.0000 120 chr3L:6269107-6269227 1.0000 120 chr2L:646639-646759 1.0000 120 chr2L:19193847-19193967 1.0000 120 chr3L:12725855-12725975 1.0000 120 chr3R:25956195-25956315 1.0000 120 chr3R:9934990-9935110 1.0000 120 chr3L:7611366-7611486 1.0000 120 chr4:505197-505317 1.0000 120 chr2L:2168680-2168800 1.0000 120 chr3R:14847329-14847449 1.0000 120 chr3L:388293-388413 1.0000 120 chr3L:13263985-13264105 1.0000 120 chr2R:11755328-11755448 1.0000 120 chr3L:6396033-6396153 1.0000 120 chr3R:16368461-16368581 1.0000 120 chr3L:14241241-14241361 1.0000 120 chr3R:18485500-18485620 1.0000 120 chrX:7179422-7179542 1.0000 120 chr3R:31312435-31312555 1.0000 120 chr2R:14975306-14975426 1.0000 120 chr3L:16643127-16643247 1.0000 120 chr3L:4721997-4722117 1.0000 120 chr2R:14030243-14030363 1.0000 120 chr3R:27167505-27167625 1.0000 120 chr3L:16752537-16752657 1.0000 120 chr3L:16218052-16218172 1.0000 120 chr2R:12013406-12013526 1.0000 120 chr3R:11937571-11937691 1.0000 120 chrX:3436310-3436430 1.0000 120 chr3L:5633716-5633836 1.0000 120 chr3R:31700355-31700475 1.0000 120 chr3R:19074368-19074488 1.0000 120 chr3R:20286200-20286320 1.0000 120 chr3L:6308759-6308879 1.0000 120 chr2R:17811103-17811223 1.0000 120 chrX:3931828-3931948 1.0000 120 chr3L:14253585-14253705 1.0000 120 chr3R:8107083-8107203 1.0000 120 chr2R:23306099-23306219 1.0000 120 chr2L:1362365-1362485 1.0000 120 chr2R:21846139-21846259 1.0000 120 chr2L:1887864-1887984 1.0000 120 chr2L:20371568-20371688 1.0000 120 chr3L:20552050-20552170 1.0000 120 chr3R:26496510-26496630 1.0000 120 chr3L:7264388-7264508 1.0000 120 chr3L:20635710-20635830 1.0000 120 chr3R:10832643-10832763 1.0000 120 chr2R:22737966-22738086 1.0000 120 chr2R:18256965-18257085 1.0000 120 chr2R:16212907-16213027 1.0000 120 chr2L:7949928-7950048 1.0000 120 chr3L:9566981-9567101 1.0000 120 chr3L:2802187-2802307 1.0000 120 chr2L:20802347-20802467 1.0000 120 chr2R:20162672-20162792 1.0000 120 chr3L:12692873-12692993 1.0000 120 chr2L:18344460-18344580 1.0000 120 chr3R:30689781-30689901 1.0000 120 chr3L:2549062-2549182 1.0000 120 chr3L:1859675-1859795 1.0000 120 chr3R:29094297-29094417 1.0000 120 chr3L:6482999-6483119 1.0000 120 chr3R:6954712-6954832 1.0000 120 chr2L:3012879-3012999 1.0000 120 chr3R:29538572-29538692 1.0000 120 chr3L:14622544-14622664 1.0000 120 chr3R:31706246-31706366 1.0000 120 chrX:2455523-2455643 1.0000 120 chrX:4175964-4176084 1.0000 120 chr3L:1880821-1880941 1.0000 120 chr2L:4071714-4071834 1.0000 120 chr2L:5623860-5623980 1.0000 120 chr2L:4348703-4348823 1.0000 120 chr2L:7619384-7619504 1.0000 120 chr2L:5483239-5483359 1.0000 120 chr2R:20065634-20065754 1.0000 120 chr3R:8469792-8469912 1.0000 120 chr3R:30164255-30164375 1.0000 120 chr3L:1320635-1320755 1.0000 120 chr3L:10928837-10928957 1.0000 120 chr2R:10656075-10656195 1.0000 120 chr2L:6991225-6991345 1.0000 120 chr3R:11338434-11338554 1.0000 120 chr2L:6197912-6198032 1.0000 120 chr3L:14451693-14451813 1.0000 120 chr2L:6508802-6508922 1.0000 120 chr3R:14684075-14684195 1.0000 120 chr3L:14984617-14984737 1.0000 120 chr2L:2162738-2162858 1.0000 120 chr3L:2533852-2533972 1.0000 120 chr3L:14534771-14534891 1.0000 120 chr3R:20284684-20284804 1.0000 120 chrX:9460752-9460872 1.0000 120 chrX:10105800-10105920 1.0000 120 chr2L:2857960-2858080 1.0000 120 chr3R:31330001-31330121 1.0000 120 chr2R:23299474-23299594 1.0000 120 chr3L:2572124-2572244 1.0000 120 chr2L:9448016-9448136 1.0000 120 chr3R:29279692-29279812 1.0000 120 chr3R:9966230-9966350 1.0000 120 chrX:1083275-1083395 1.0000 120 chr3R:16119603-16119723 1.0000 120 chr2L:12013947-12014067 1.0000 120 chr2R:13461300-13461420 1.0000 120 chr3R:14389395-14389515 1.0000 120 chr2R:18894905-18895025 1.0000 120 chr2L:4055562-4055682 1.0000 120 chr2L:16687870-16687990 1.0000 120 chr2R:21850467-21850587 1.0000 120 chr2L:6022945-6023065 1.0000 120 chrX:3722373-3722493 1.0000 120 chr3L:19315044-19315164 1.0000 120 chrX:18834542-18834662 1.0000 120 chr3L:817862-817982 1.0000 120 chr3L:8459392-8459512 1.0000 120 chr3L:1087454-1087574 1.0000 120 chr3L:6266532-6266652 1.0000 120 chr2R:9672813-9672933 1.0000 120 chrX:7491054-7491174 1.0000 120 chr3L:4545797-4545917 1.0000 120 chr3R:21837159-21837279 1.0000 120 chr3L:18079818-18079938 1.0000 120 chr3R:29300189-29300309 1.0000 120 chr3L:17965117-17965237 1.0000 120 chrX:7177275-7177395 1.0000 120 chr3L:18079599-18079719 1.0000 120 chr2L:19325591-19325711 1.0000 120 chrX:6059294-6059414 1.0000 120 chr2L:19202021-19202141 1.0000 120 chrX:4197626-4197746 1.0000 120 chr2R:24896050-24896170 1.0000 120 chr3L:15209087-15209207 1.0000 120 chr3R:23147747-23147867 1.0000 120 chr3R:8792673-8792793 1.0000 120 chr3L:746491-746611 1.0000 120 chr3R:14077174-14077294 1.0000 120 chr3R:21899201-21899321 1.0000 120 chr2L:15304473-15304593 1.0000 120 chr3R:31336391-31336511 1.0000 120 chrX:13245939-13246059 1.0000 120 chr3L:15762959-15763079 1.0000 120 chr2L:609615-609735 1.0000 120 chr3R:31991895-31992015 1.0000 120 chr2L:5249914-5250034 1.0000 120 chr3L:818536-818656 1.0000 120 chr3R:5120940-5121060 1.0000 120 chr3L:6220319-6220439 1.0000 120 chr3R:9159917-9160037 1.0000 120 chr3R:14449444-14449564 1.0000 120 chr3R:31762782-31762902 1.0000 120 chr3R:9594095-9594215 1.0000 120 chrX:4970041-4970161 1.0000 120 chr2R:12741716-12741836 1.0000 120 chr3R:15556629-15556749 1.0000 120 chrX:9047130-9047250 1.0000 120 chr2L:16591503-16591623 1.0000 120 chr2L:675046-675166 1.0000 120 chr3L:6359334-6359454 1.0000 120 chr3L:2471186-2471306 1.0000 120 chr2L:7503894-7504014 1.0000 120 chr3R:30501302-30501422 1.0000 120 chr2L:2804674-2804794 1.0000 120 chr3L:16915869-16915989 1.0000 120 chr3L:8419121-8419241 1.0000 120 chr3L:1392131-1392251 1.0000 120 chr3R:29786548-29786668 1.0000 120 chr3R:21682197-21682317 1.0000 120 chr2L:18645603-18645723 1.0000 120 chr3R:22324853-22324973 1.0000 120 chrX:16966661-16966781 1.0000 120 chr2R:15735433-15735553 1.0000 120 chr2L:14598402-14598522 1.0000 120 chr3L:8870657-8870777 1.0000 120 chr3R:8154146-8154266 1.0000 120 chrX:12015121-12015241 1.0000 120 chrX:14897815-14897935 1.0000 120 chrX:7544019-7544139 1.0000 120 chr3R:21824208-21824328 1.0000 120 chr3L:94196-94316 1.0000 120 chr3L:9742522-9742642 1.0000 120 chr3R:13841141-13841261 1.0000 120 chrX:10927304-10927424 1.0000 120 chr3R:21894023-21894143 1.0000 120 chr3R:27224846-27224966 1.0000 120 chr3L:6358634-6358754 1.0000 120 chr2R:19849198-19849318 1.0000 120 chr3R:22195817-22195937 1.0000 120 chr3L:16204211-16204331 1.0000 120 chr2L:5080649-5080769 1.0000 120 chr3R:30096007-30096127 1.0000 120 chr3R:23486871-23486991 1.0000 120 chr3R:16718112-16718232 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG3919/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3919.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.318 C 0.181 G 0.174 T 0.327 Background letter frequencies (from file dataset with add-one prior applied): A 0.318 C 0.182 G 0.174 T 0.326 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCTGCWGC MEME-1 width = 8 sites = 41 llr = 422 E-value = 3.3e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3::61: pos.-specific C :a::a::a probability G a::a::9: matrix T ::7::4:: bits 2.5 * ** 2.3 ** ** * 2.0 ** ** * 1.8 ** ** ** Relative 1.5 ** ** ** Entropy 1.3 ** ** ** (14.9 bits) 1.0 ** ** ** 0.8 ** ** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTGCAGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10927304-10927424 53 3.29e-06 aacaacagca gctgcagc aacaacagcg chr2R:13461300-13461420 16 3.29e-06 CAGCTTACTA GCTGCAGC ATTCTGAGCG chr3R:14432019-14432139 49 3.29e-06 tgctgttgct gctgcagc tgtgcggcag chr3L:13028786-13028906 34 3.29e-06 agcaacatct gctgcagc ggcaacagca chr2L:13272676-13272796 42 3.29e-06 agctccagca gctgcagc aacagcagtt chr3R:22785048-22785168 110 3.29e-06 agcagcagtt gctgcagc gtc chr3R:16206281-16206401 33 3.29e-06 TGCTGCAATT GCTGCAGC ATCAACAGCA chr3R:8792673-8792793 49 6.67e-06 CAACACTTGC GCTGCTGC AACTGCAACG chr2L:12013947-12014067 75 6.67e-06 tgctgcgttt gctgctgc tCCCAGCAGG chr3L:12692873-12692993 28 6.67e-06 tgtcgccgct gctgctgc tgctgctgct chr3R:9934990-9935110 100 6.67e-06 CGATTTGACT GCTGCTGC CATTTGAATT chr3R:25956195-25956315 12 6.67e-06 Ggctgctgct gctgctgc ggcttctgat chr2L:6463321-6463441 64 6.67e-06 cgctgctgct gctgctgc tgttgcacga chr3R:26096211-26096331 75 6.67e-06 tgcatgtgct gctgctgc gacactgttg chr3L:2796369-2796489 57 6.67e-06 tgctgctgtt gctgctgc ggctgctggt chr2L:17380810-17380930 39 6.67e-06 agctgctgtt gctgctgc gagttgaagt chr2R:13823806-13823926 103 6.67e-06 tgctgctgct gctgctgc tCCtgatggt chr3R:24720599-24720719 94 6.67e-06 tgtctcttgt gctgctgc tgtttccaaa chr2R:14004777-14004897 108 6.67e-06 tgctgttgct gctgctgc tgctg chr2L:7277151-7277271 108 6.67e-06 ttgtgctgtt gctgctgc tgttc chr2L:10774245-10774365 87 6.67e-06 TGTtgctgct gctgctgc agtgctgctg chr2R:15735433-15735553 106 9.88e-06 tacagcgcga gcagcagc aaccgga chr3L:17965117-17965237 104 9.88e-06 agcaactgca gcagcagc aATATTGCT chr2R:14030243-14030363 41 9.88e-06 ggcaacagca gcagcagc agcagcagca chr3R:21944160-21944280 50 9.88e-06 agcaacagca gcagcagc agcagcaACT chr2R:14031607-14031727 109 9.88e-06 agcatcagca gcagcagc agca chr3L:8372067-8372187 42 9.88e-06 cggcaacaca gcagcagc agcaacacag chr3L:15217433-15217553 1 9.88e-06 . gcagcagc aactgcagca chrX:9485294-9485414 11 9.88e-06 attagcaaca gcagcagc aaaacgcaat chr2R:18965368-18965488 48 9.88e-06 agcaacactt gcagcagc aacagcggca chr3L:14241241-14241361 113 1.69e-05 TTCCTTTAGT GCCGCAGC chr3R:8154146-8154266 85 2.66e-05 AATTTCGCTC GGTGCAGC CTTCCAGTTT chr2L:18344460-18344580 66 2.66e-05 GATAAATAGT GCTGCAGG ATTAAGGATT chr2L:1887864-1887984 89 2.66e-05 AGGTGGGCTA GCTGCACC GCATCCTATT chr2L:14624011-14624131 10 2.66e-05 TCATTTAGA GCTGCACC CAGAGAAAAT chr2R:11072659-11072779 51 2.66e-05 tatgttgcat gctgcaGG AGGCACACAC chrX:12015121-12015241 15 3.26e-05 CAAGAGCACA GCTGCAAC GCACAGTGGA chr3R:16368461-16368581 71 4.64e-05 TTGGAATTTA GCAGCCGC TTTTAGGTAT chr3R:14847329-14847449 31 4.64e-05 ACTCTTTTTG GGTGCTGC GAGCTCAACT chr3L:5950626-5950746 84 6.79e-05 AACATACaca gcagcaac accagcaaca chr3R:27224846-27224966 1 8.37e-05 . GCAGCTAC CAGTACGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10927304-10927424 3.3e-06 52_[+1]_60 chr2R:13461300-13461420 3.3e-06 15_[+1]_97 chr3R:14432019-14432139 3.3e-06 48_[+1]_64 chr3L:13028786-13028906 3.3e-06 33_[+1]_79 chr2L:13272676-13272796 3.3e-06 41_[+1]_71 chr3R:22785048-22785168 3.3e-06 109_[+1]_3 chr3R:16206281-16206401 3.3e-06 32_[+1]_80 chr3R:8792673-8792793 6.7e-06 48_[+1]_64 chr2L:12013947-12014067 6.7e-06 74_[+1]_38 chr3L:12692873-12692993 6.7e-06 27_[+1]_85 chr3R:9934990-9935110 6.7e-06 99_[+1]_13 chr3R:25956195-25956315 6.7e-06 11_[+1]_101 chr2L:6463321-6463441 6.7e-06 63_[+1]_49 chr3R:26096211-26096331 6.7e-06 74_[+1]_38 chr3L:2796369-2796489 6.7e-06 56_[+1]_56 chr2L:17380810-17380930 6.7e-06 38_[+1]_74 chr2R:13823806-13823926 6.7e-06 102_[+1]_10 chr3R:24720599-24720719 6.7e-06 93_[+1]_19 chr2R:14004777-14004897 6.7e-06 107_[+1]_5 chr2L:7277151-7277271 6.7e-06 107_[+1]_5 chr2L:10774245-10774365 6.7e-06 86_[+1]_26 chr2R:15735433-15735553 9.9e-06 105_[+1]_7 chr3L:17965117-17965237 9.9e-06 103_[+1]_9 chr2R:14030243-14030363 9.9e-06 40_[+1]_72 chr3R:21944160-21944280 9.9e-06 49_[+1]_63 chr2R:14031607-14031727 9.9e-06 108_[+1]_4 chr3L:8372067-8372187 9.9e-06 41_[+1]_71 chr3L:15217433-15217553 9.9e-06 [+1]_112 chrX:9485294-9485414 9.9e-06 10_[+1]_102 chr2R:18965368-18965488 9.9e-06 47_[+1]_65 chr3L:14241241-14241361 1.7e-05 112_[+1] chr3R:8154146-8154266 2.7e-05 84_[+1]_28 chr2L:18344460-18344580 2.7e-05 65_[+1]_47 chr2L:1887864-1887984 2.7e-05 88_[+1]_24 chr2L:14624011-14624131 2.7e-05 9_[+1]_103 chr2R:11072659-11072779 2.7e-05 50_[+1]_62 chrX:12015121-12015241 3.3e-05 14_[+1]_98 chr3R:16368461-16368581 4.6e-05 70_[+1]_42 chr3R:14847329-14847449 4.6e-05 30_[+1]_82 chr3L:5950626-5950746 6.8e-05 83_[+1]_29 chr3R:27224846-27224966 8.4e-05 [+1]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCWGC width=8 seqs=41 chrX:10927304-10927424 ( 53) GCTGCAGC 1 chr2R:13461300-13461420 ( 16) GCTGCAGC 1 chr3R:14432019-14432139 ( 49) GCTGCAGC 1 chr3L:13028786-13028906 ( 34) GCTGCAGC 1 chr2L:13272676-13272796 ( 42) GCTGCAGC 1 chr3R:22785048-22785168 ( 110) GCTGCAGC 1 chr3R:16206281-16206401 ( 33) GCTGCAGC 1 chr3R:8792673-8792793 ( 49) GCTGCTGC 1 chr2L:12013947-12014067 ( 75) GCTGCTGC 1 chr3L:12692873-12692993 ( 28) GCTGCTGC 1 chr3R:9934990-9935110 ( 100) GCTGCTGC 1 chr3R:25956195-25956315 ( 12) GCTGCTGC 1 chr2L:6463321-6463441 ( 64) GCTGCTGC 1 chr3R:26096211-26096331 ( 75) GCTGCTGC 1 chr3L:2796369-2796489 ( 57) GCTGCTGC 1 chr2L:17380810-17380930 ( 39) GCTGCTGC 1 chr2R:13823806-13823926 ( 103) GCTGCTGC 1 chr3R:24720599-24720719 ( 94) GCTGCTGC 1 chr2R:14004777-14004897 ( 108) GCTGCTGC 1 chr2L:7277151-7277271 ( 108) GCTGCTGC 1 chr2L:10774245-10774365 ( 87) GCTGCTGC 1 chr2R:15735433-15735553 ( 106) GCAGCAGC 1 chr3L:17965117-17965237 ( 104) GCAGCAGC 1 chr2R:14030243-14030363 ( 41) GCAGCAGC 1 chr3R:21944160-21944280 ( 50) GCAGCAGC 1 chr2R:14031607-14031727 ( 109) GCAGCAGC 1 chr3L:8372067-8372187 ( 42) GCAGCAGC 1 chr3L:15217433-15217553 ( 1) GCAGCAGC 1 chrX:9485294-9485414 ( 11) GCAGCAGC 1 chr2R:18965368-18965488 ( 48) GCAGCAGC 1 chr3L:14241241-14241361 ( 113) GCCGCAGC 1 chr3R:8154146-8154266 ( 85) GGTGCAGC 1 chr2L:18344460-18344580 ( 66) GCTGCAGG 1 chr2L:1887864-1887984 ( 89) GCTGCACC 1 chr2L:14624011-14624131 ( 10) GCTGCACC 1 chr2R:11072659-11072779 ( 51) GCTGCAGG 1 chrX:12015121-12015241 ( 15) GCTGCAAC 1 chr3R:16368461-16368581 ( 71) GCAGCCGC 1 chr3R:14847329-14847449 ( 31) GGTGCTGC 1 chr3L:5950626-5950746 ( 84) GCAGCAAC 1 chr3R:27224846-27224966 ( 1) GCAGCTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 3.3e-036 -1200 -1200 253 -1200 -1200 239 -183 -1200 -12 -289 -1200 106 -1200 -1200 253 -1200 -1200 246 -1200 -1200 88 -289 -1200 26 -212 -189 234 -1200 -1200 239 -183 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 3.3e-036 0.000000 0.000000 1.000000 0.000000 0.000000 0.951220 0.048780 0.000000 0.292683 0.024390 0.000000 0.682927 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.585366 0.024390 0.000000 0.390244 0.073171 0.048780 0.878049 0.000000 0.000000 0.951220 0.048780 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[TA]GC[AT]GC -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGCWGC MEME-2 width = 8 sites = 34 llr = 344 E-value = 3.5e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::61:6:: pos.-specific C :91:a::a probability G a::9::a: matrix T :14::4:: bits 2.5 * 2.3 * * ** 2.0 ** ** ** 1.8 ** ** ** Relative 1.5 ** ** ** Entropy 1.3 ** ** ** (14.6 bits) 1.0 ** ** ** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGCAGC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10927304-10927424 20 3.21e-06 ggctcatacg gcagcagc agcaacagca chr3L:17965117-17965237 71 3.21e-06 aagagcagca gcagcagc agcagcaact chr2R:14030243-14030363 50 3.21e-06 agcagcagca gcagcagc aacatcaacg chr3R:21944160-21944280 35 3.21e-06 GGCCTcagca gcagcagc aacagcagca chr2R:14031607-14031727 94 3.21e-06 CGACAAACca gcagcagc atcagcagca chr3L:8372067-8372187 7 3.21e-06 ATagca gcagcagc aacatcactc chr3L:15217433-15217553 28 3.21e-06 accaccagca gcagcagc aatgcccaac chrX:9485294-9485414 71 3.21e-06 acagcaacag gcagcagc aacaactgca chr3L:13028786-13028906 10 3.21e-06 gcggcagca gcagcagc agcaaaagca chr2L:13272676-13272796 108 3.21e-06 aacagttgca gcagcagc aacag chr3R:22785048-22785168 98 3.21e-06 tgcagctgtt gcagcagc agttgctgca chr2R:18965368-18965488 30 3.21e-06 ACTcggcaac gcagcagc agcaacactt chr3R:16206281-16206401 87 3.21e-06 agcagcagca gcagcagc aATTGCAGCA chr2L:6463321-6463441 43 6.50e-06 tgttgctgtt gcagctgc cgtcgctgct chr2L:17380810-17380930 27 6.50e-06 TGCGGTctgc gcagctgc tgttgctgct chr2L:12013947-12014067 63 1.32e-05 ttgctgctgt gctgctgc gtttgctgct chr3L:12692873-12692993 6 1.32e-05 ctgct gctgctgc ttcttgtcgc chr3R:25956195-25956315 3 1.32e-05 GG gctgctgc tgctgctgcg chr3R:26096211-26096331 54 1.32e-05 gtcgtctgcg gctgctgc tgttgcatgt chr3L:2796369-2796489 27 1.32e-05 tgcaagtgct gctgctgc tgctgttgga chr3R:14432019-14432139 28 1.32e-05 CAAtgttgtt gctgctgc tgttgctgtt chr2R:13823806-13823926 94 1.32e-05 tgctgttgct gctgctgc tgctgctgct chr3R:24720599-24720719 22 1.32e-05 tgtatatgtt gctgctgc atgtgttaca chr2L:7277151-7277271 69 1.32e-05 cgatggtgtt gctgctgc ttctgctgtt chr2L:10774245-10774365 98 1.32e-05 ctgctgcagt gctgctgc ttgccggtgc chr3R:8792673-8792793 75 1.50e-05 CGCTGCAACT GCCGCAGC AGGTTTTTTT chrX:3436310-3436430 6 2.28e-05 caagt gcaaCAGC CGAGCCAGGA chr3L:5950626-5950746 113 2.28e-05 gagcaacaca gcaacagc chr3L:1859675-1859795 48 4.36e-05 AGCCTTGGCC GCAGGAGC CTCTTGTCTC chr2R:15735433-15735553 4 4.70e-05 gca ccagcagc gccagcaaca chr2L:9448016-9448136 108 7.15e-05 TTTTTCATCA GTTGCAGC ACTTT chr2R:12013406-12013526 41 8.39e-05 TTTACAGAGT GCAGCAGT TACTATCAAT chr2R:14004777-14004897 93 8.99e-05 TGGAGGCGAA gttgctgc tgttgctgct chrX:4175964-4176084 64 1.21e-04 CAGTGTACTT GCCACTGC TTATCCTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10927304-10927424 3.2e-06 19_[+2]_93 chr3L:17965117-17965237 3.2e-06 70_[+2]_42 chr2R:14030243-14030363 3.2e-06 49_[+2]_63 chr3R:21944160-21944280 3.2e-06 34_[+2]_78 chr2R:14031607-14031727 3.2e-06 93_[+2]_19 chr3L:8372067-8372187 3.2e-06 6_[+2]_106 chr3L:15217433-15217553 3.2e-06 27_[+2]_85 chrX:9485294-9485414 3.2e-06 70_[+2]_42 chr3L:13028786-13028906 3.2e-06 9_[+2]_103 chr2L:13272676-13272796 3.2e-06 107_[+2]_5 chr3R:22785048-22785168 3.2e-06 97_[+2]_15 chr2R:18965368-18965488 3.2e-06 29_[+2]_83 chr3R:16206281-16206401 3.2e-06 86_[+2]_26 chr2L:6463321-6463441 6.5e-06 42_[+2]_70 chr2L:17380810-17380930 6.5e-06 26_[+2]_86 chr2L:12013947-12014067 1.3e-05 62_[+2]_50 chr3L:12692873-12692993 1.3e-05 5_[+2]_107 chr3R:25956195-25956315 1.3e-05 2_[+2]_110 chr3R:26096211-26096331 1.3e-05 53_[+2]_59 chr3L:2796369-2796489 1.3e-05 26_[+2]_86 chr3R:14432019-14432139 1.3e-05 27_[+2]_85 chr2R:13823806-13823926 1.3e-05 93_[+2]_19 chr3R:24720599-24720719 1.3e-05 21_[+2]_91 chr2L:7277151-7277271 1.3e-05 68_[+2]_44 chr2L:10774245-10774365 1.3e-05 97_[+2]_15 chr3R:8792673-8792793 1.5e-05 74_[+2]_38 chrX:3436310-3436430 2.3e-05 5_[+2]_107 chr3L:5950626-5950746 2.3e-05 112_[+2] chr3L:1859675-1859795 4.4e-05 47_[+2]_65 chr2R:15735433-15735553 4.7e-05 3_[+2]_109 chr2L:9448016-9448136 7.2e-05 107_[+2]_5 chr2R:12013406-12013526 8.4e-05 40_[+2]_72 chr2R:14004777-14004897 9e-05 92_[+2]_20 chrX:4175964-4176084 0.00012 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGCWGC width=8 seqs=34 chrX:10927304-10927424 ( 20) GCAGCAGC 1 chr3L:17965117-17965237 ( 71) GCAGCAGC 1 chr2R:14030243-14030363 ( 50) GCAGCAGC 1 chr3R:21944160-21944280 ( 35) GCAGCAGC 1 chr2R:14031607-14031727 ( 94) GCAGCAGC 1 chr3L:8372067-8372187 ( 7) GCAGCAGC 1 chr3L:15217433-15217553 ( 28) GCAGCAGC 1 chrX:9485294-9485414 ( 71) GCAGCAGC 1 chr3L:13028786-13028906 ( 10) GCAGCAGC 1 chr2L:13272676-13272796 ( 108) GCAGCAGC 1 chr3R:22785048-22785168 ( 98) GCAGCAGC 1 chr2R:18965368-18965488 ( 30) GCAGCAGC 1 chr3R:16206281-16206401 ( 87) GCAGCAGC 1 chr2L:6463321-6463441 ( 43) GCAGCTGC 1 chr2L:17380810-17380930 ( 27) GCAGCTGC 1 chr2L:12013947-12014067 ( 63) GCTGCTGC 1 chr3L:12692873-12692993 ( 6) GCTGCTGC 1 chr3R:25956195-25956315 ( 3) GCTGCTGC 1 chr3R:26096211-26096331 ( 54) GCTGCTGC 1 chr3L:2796369-2796489 ( 27) GCTGCTGC 1 chr3R:14432019-14432139 ( 28) GCTGCTGC 1 chr2R:13823806-13823926 ( 94) GCTGCTGC 1 chr3R:24720599-24720719 ( 22) GCTGCTGC 1 chr2L:7277151-7277271 ( 69) GCTGCTGC 1 chr2L:10774245-10774365 ( 98) GCTGCTGC 1 chr3R:8792673-8792793 ( 75) GCCGCAGC 1 chrX:3436310-3436430 ( 6) GCAACAGC 1 chr3L:5950626-5950746 ( 113) GCAACAGC 1 chr3L:1859675-1859795 ( 48) GCAGGAGC 1 chr2R:15735433-15735553 ( 4) CCAGCAGC 1 chr2L:9448016-9448136 ( 108) GTTGCAGC 1 chr2R:12013406-12013526 ( 41) GCAGCAGT 1 chr2R:14004777-14004897 ( 93) GTTGCTGC 1 chrX:4175964-4176084 ( 64) GCCACTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 3.5e-023 -1173 -262 248 -1173 -1173 237 -1173 -247 89 -162 -1173 11 -185 -1173 239 -1173 -1173 242 -256 -1173 89 -1173 -1173 33 -1173 -1173 253 -1173 -1173 242 -1173 -347 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 3.5e-023 0.000000 0.029412 0.970588 0.000000 0.000000 0.941176 0.000000 0.058824 0.588235 0.058824 0.000000 0.352941 0.088235 0.000000 0.911765 0.000000 0.000000 0.970588 0.029412 0.000000 0.588235 0.000000 0.000000 0.411765 0.000000 0.000000 1.000000 0.000000 0.000000 0.970588 0.000000 0.029412 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-2 regular expression -------------------------------------------------------------------------------- GC[AT]GC[AT]GC -------------------------------------------------------------------------------- Time 13.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GCDGCWGC MEME-3 width = 8 sites = 25 llr = 255 E-value = 5.3e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::31:4:: pos.-specific C :8::a::a probability G a:29::a: matrix T :25::6:: bits 2.5 * * ** 2.3 * * ** 2.0 * ** ** 1.8 ** ** ** Relative 1.5 ** ** ** Entropy 1.3 ** ** ** (14.7 bits) 1.0 ** ** ** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel GCTGCTGC consensus A A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12692873-12692993 37 3.38e-06 tgctgctgct gctgctgc tATGCCATCT chr3R:25956195-25956315 72 3.38e-06 tgccgctgtt gctgctgc GCCGACGATG chr2L:6463321-6463441 55 3.38e-06 agctgccgtc gctgctgc tgctgctgct chr3R:26096211-26096331 9 3.38e-06 ttgctgtt gctgctgc tgttgctgtg chr3L:2796369-2796489 12 3.38e-06 tgtgcgtgct gctgctgc aagtgctgct chr2L:17380810-17380930 77 3.38e-06 tgttgctgcc gctgctgc tgctgttgct chr2R:13823806-13823926 52 3.38e-06 gcatgttgct gctgctgc tgttgttgct chr3R:16206281-16206401 21 3.38e-06 TCGAGCCGAT GCTGCTGC AATTGCTGCA chr3R:24720599-24720719 112 5.18e-06 tgtttccaaa gcggctgc t chrX:10927304-10927424 68 1.02e-05 agcaacaaca gcggcagc tacaacagca chr2R:14030243-14030363 70 1.02e-05 catcaacgca gcggcagc aacatcaccg chr3R:14432019-14432139 60 1.02e-05 ctgcagctgt gcggcagc aacacatgtg chr3L:13028786-13028906 1 1.02e-05 . gcggcagc agcagcagca chr2R:18965368-18965488 60 1.02e-05 agcagcaaca gcggcagc aacagcagta chr3L:17965117-17965237 35 1.67e-05 agaagcagca gcagcagc agcgacagcg chr3L:8372067-8372187 65 1.67e-05 cacagcagca gcagcagc agcagcacaa chr3L:15217433-15217553 61 1.67e-05 catccaacat gcagcagc aacatcaaca chr2L:13272676-13272796 21 1.67e-05 agttgcaaca gcagcagc aacagctcca chr3R:22785048-22785168 77 1.67e-05 AGCGCATgca gcagcagc agttgcagct chr2L:12013947-12014067 52 2.28e-05 ttgctgggat gttgctgc tgtgctgctg chr2R:14004777-14004897 56 2.28e-05 TGGACCTGTT GTTGCTGC GTTTGCTGTT chr2L:7277151-7277271 90 2.28e-05 tgctgttggt gttgctgc ttgtgctgtt chr2L:10774245-10774365 78 2.28e-05 CGCGGATGAT GTtgctgc tgctgctgca chr3R:21944160-21944280 62 7.14e-05 agcagcagca gcaACTGC AGCAATCTCT chrX:9485294-9485414 95 7.14e-05 tgcaactgca gcaactgc aactgcaaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12692873-12692993 3.4e-06 36_[+3]_76 chr3R:25956195-25956315 3.4e-06 71_[+3]_41 chr2L:6463321-6463441 3.4e-06 54_[+3]_58 chr3R:26096211-26096331 3.4e-06 8_[+3]_104 chr3L:2796369-2796489 3.4e-06 11_[+3]_101 chr2L:17380810-17380930 3.4e-06 76_[+3]_36 chr2R:13823806-13823926 3.4e-06 51_[+3]_61 chr3R:16206281-16206401 3.4e-06 20_[+3]_92 chr3R:24720599-24720719 5.2e-06 111_[+3]_1 chrX:10927304-10927424 1e-05 67_[+3]_45 chr2R:14030243-14030363 1e-05 69_[+3]_43 chr3R:14432019-14432139 1e-05 59_[+3]_53 chr3L:13028786-13028906 1e-05 [+3]_112 chr2R:18965368-18965488 1e-05 59_[+3]_53 chr3L:17965117-17965237 1.7e-05 34_[+3]_78 chr3L:8372067-8372187 1.7e-05 64_[+3]_48 chr3L:15217433-15217553 1.7e-05 60_[+3]_52 chr2L:13272676-13272796 1.7e-05 20_[+3]_92 chr3R:22785048-22785168 1.7e-05 76_[+3]_36 chr2L:12013947-12014067 2.3e-05 51_[+3]_61 chr2R:14004777-14004897 2.3e-05 55_[+3]_57 chr2L:7277151-7277271 2.3e-05 89_[+3]_23 chr2L:10774245-10774365 2.3e-05 77_[+3]_35 chr3R:21944160-21944280 7.1e-05 61_[+3]_51 chrX:9485294-9485414 7.1e-05 94_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCDGCWGC width=8 seqs=25 chr3L:12692873-12692993 ( 37) GCTGCTGC 1 chr3R:25956195-25956315 ( 72) GCTGCTGC 1 chr2L:6463321-6463441 ( 55) GCTGCTGC 1 chr3R:26096211-26096331 ( 9) GCTGCTGC 1 chr3L:2796369-2796489 ( 12) GCTGCTGC 1 chr2L:17380810-17380930 ( 77) GCTGCTGC 1 chr2R:13823806-13823926 ( 52) GCTGCTGC 1 chr3R:16206281-16206401 ( 21) GCTGCTGC 1 chr3R:24720599-24720719 ( 112) GCGGCTGC 1 chrX:10927304-10927424 ( 68) GCGGCAGC 1 chr2R:14030243-14030363 ( 70) GCGGCAGC 1 chr3R:14432019-14432139 ( 60) GCGGCAGC 1 chr3L:13028786-13028906 ( 1) GCGGCAGC 1 chr2R:18965368-18965488 ( 60) GCGGCAGC 1 chr3L:17965117-17965237 ( 35) GCAGCAGC 1 chr3L:8372067-8372187 ( 65) GCAGCAGC 1 chr3L:15217433-15217553 ( 61) GCAGCAGC 1 chr2L:13272676-13272796 ( 21) GCAGCAGC 1 chr3R:22785048-22785168 ( 77) GCAGCAGC 1 chr2L:12013947-12014067 ( 52) GTTGCTGC 1 chr2R:14004777-14004897 ( 56) GTTGCTGC 1 chr2L:7277151-7277271 ( 90) GTTGCTGC 1 chr2L:10774245-10774365 ( 78) GTTGCTGC 1 chr3R:21944160-21944280 ( 62) GCAACTGC 1 chrX:9485294-9485414 ( 95) GCAACTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 5.3e-011 -1129 -1129 253 -1129 -1129 221 -1129 -103 -18 -1129 47 56 -199 -1129 240 -1129 -1129 246 -1129 -1129 33 -1129 -1129 88 -1129 -1129 253 -1129 -1129 246 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 5.3e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.840000 0.000000 0.160000 0.280000 0.000000 0.240000 0.480000 0.080000 0.000000 0.920000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDGCWGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[TAG]GC[TA]GC -------------------------------------------------------------------------------- Time 20.03 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAACAGC MEME-4 width = 8 sites = 16 llr = 170 E-value = 1.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAACAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a9:a11 pos.-specific C 1a::a:19 probability G 9:::::9: matrix T :::1:::: bits 2.5 * * 2.3 ** * 2.0 ** * 1.8 *** **** Relative 1.5 *** **** Entropy 1.3 ******** (15.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAACAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10927304-10927424 29 5.87e-06 ggcagcagca gcaacagc agcaacaaca chr3L:17965117-17965237 89 5.87e-06 agcagcaact gcaacagc aactgcagca chr2R:14030243-14030363 93 5.87e-06 caccgcaaca gcaacagc TTCGAGTCGC chr3L:8372067-8372187 88 5.87e-06 cacaacagca gcaacagc aACCATGTGA chr3L:15217433-15217553 79 5.87e-06 aacatcaaca gcaacagc aacagcaaca chrX:9485294-9485414 113 5.87e-06 aactgcaaca gcaacagc chr3L:13028786-13028906 61 5.87e-06 agcagcagca gcaacagc aacactttgc chr2R:13823806-13823926 18 5.87e-06 TTCGGCGGCT GCAACAGC CTCTGCAACA chr2L:13272676-13272796 3 5.87e-06 ca gcaacagc agttgcaaca chr2R:18965368-18965488 87 5.87e-06 agcaacactt gcaacagc aacatcaacg chr3R:31706246-31706366 85 1.61e-05 TTGCTTATTC GCAACAGA TTCTGAAACA chrX:3931828-3931948 108 1.61e-05 CATCTCACCA GCAACAGA TAGTT chr2L:2162738-2162858 51 2.83e-05 AGAAGGTTTA GCATCAGC TAAACATGAT chr2R:11072659-11072779 83 2.83e-05 CGTGCAGCGT GCAACACC TCGCCAGGAA chr2L:5623860-5623980 54 3.44e-05 TTATTATTAC CCAACAGC AACGTGGCAT chr3R:22785048-22785168 38 4.51e-05 GCGTTAGTCC GCAACAAC TGGAGCAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10927304-10927424 5.9e-06 28_[+4]_84 chr3L:17965117-17965237 5.9e-06 88_[+4]_24 chr2R:14030243-14030363 5.9e-06 92_[+4]_20 chr3L:8372067-8372187 5.9e-06 87_[+4]_25 chr3L:15217433-15217553 5.9e-06 78_[+4]_34 chrX:9485294-9485414 5.9e-06 112_[+4] chr3L:13028786-13028906 5.9e-06 60_[+4]_52 chr2R:13823806-13823926 5.9e-06 17_[+4]_95 chr2L:13272676-13272796 5.9e-06 2_[+4]_110 chr2R:18965368-18965488 5.9e-06 86_[+4]_26 chr3R:31706246-31706366 1.6e-05 84_[+4]_28 chrX:3931828-3931948 1.6e-05 107_[+4]_5 chr2L:2162738-2162858 2.8e-05 50_[+4]_62 chr2R:11072659-11072779 2.8e-05 82_[+4]_30 chr2L:5623860-5623980 3.4e-05 53_[+4]_59 chr3R:22785048-22785168 4.5e-05 37_[+4]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAACAGC width=8 seqs=16 chrX:10927304-10927424 ( 29) GCAACAGC 1 chr3L:17965117-17965237 ( 89) GCAACAGC 1 chr2R:14030243-14030363 ( 93) GCAACAGC 1 chr3L:8372067-8372187 ( 88) GCAACAGC 1 chr3L:15217433-15217553 ( 79) GCAACAGC 1 chrX:9485294-9485414 ( 113) GCAACAGC 1 chr3L:13028786-13028906 ( 61) GCAACAGC 1 chr2R:13823806-13823926 ( 18) GCAACAGC 1 chr2L:13272676-13272796 ( 3) GCAACAGC 1 chr2R:18965368-18965488 ( 87) GCAACAGC 1 chr3R:31706246-31706366 ( 85) GCAACAGA 1 chrX:3931828-3931948 ( 108) GCAACAGA 1 chr2L:2162738-2162858 ( 51) GCATCAGC 1 chr2R:11072659-11072779 ( 83) GCAACACC 1 chr2L:5623860-5623980 ( 54) CCAACAGC 1 chr3R:22785048-22785168 ( 38) GCAACAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 1.3e-003 -1064 -154 243 -1064 -1064 246 -1064 -1064 165 -1064 -1064 -1064 156 -1064 -1064 -238 -1064 246 -1064 -1064 165 -1064 -1064 -1064 -234 -154 233 -1064 -135 227 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.3e-003 0.000000 0.062500 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.937500 0.000000 0.000000 0.062500 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.062500 0.062500 0.875000 0.000000 0.125000 0.875000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAACAGC MEME-4 regular expression -------------------------------------------------------------------------------- GCAACAGC -------------------------------------------------------------------------------- Time 26.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCTGCTG MEME-5 width = 8 sites = 23 llr = 225 E-value = 1.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::81:a:: probability G 18::a::a matrix T 9228::a: bits 2.5 ** 2.3 ** * 2.0 ** * 1.8 ** * Relative 1.5 ** **** Entropy 1.3 *** **** (14.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGCTGCTG consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8154146-8154266 113 6.05e-06 GGCTTGTTCA TGCTGCTG chr3R:25956195-25956315 32 6.05e-06 cttctgatgt tgctgctg ttgctgcggc chr2L:6463321-6463441 92 6.05e-06 tggctgtgca tgctgctg AGCCTCCGCG chr3R:26096211-26096331 104 6.05e-06 cgacgtttca tgctgctg gaagttatg chr3L:2796369-2796489 83 6.05e-06 gtattgctgt tgctgctg cgacagtagt chr3R:14432019-14432139 76 6.05e-06 gcaacacatg tgctgctg ttgccgttgA chr2L:17380810-17380930 57 6.05e-06 gagttgaagt tgctgctg catgttgctg chr2R:13823806-13823926 69 6.05e-06 ctgttgttgc tgctgctg caagtgttgc chr3R:24720599-24720719 6 6.05e-06 gtcgt tgctgctg tatatgttgc chr2L:10774245-10774365 113 6.05e-06 tgcttgccgg tgctgctg chr2L:2804674-2804794 37 9.42e-06 TGGACTGGAC TGCCGCTG AACTTTGGAC chr2R:18894905-18895025 104 1.26e-05 TCCTCGCGTC GGCTGCTG AAACGTATC chrX:1083275-1083395 48 1.26e-05 ACGGAGAGAC GGCTGCTG AATATCGATT chr2L:12013947-12014067 40 3.48e-05 CAAGGTCCGT tgttgctg ggatgttgct chr3L:21080590-21080710 66 3.48e-05 AATATTCTAG TTCTGCTG TTCTCCGTTC chr2R:14004777-14004897 77 3.48e-05 TGCTGTTTGA TGTTGCTG GAGGCGAAgt chr2L:7277151-7277271 77 3.48e-05 ttgctgctgc ttctgctg ttggtgttgc chr3R:22785048-22785168 88 4.07e-05 cagcagcagt tgcagctg ttgcagcagc chr3L:12692873-12692993 109 5.49e-05 ATACTACCGC TGTCGCTG CCGC chr3L:5950626-5950746 5 5.49e-05 TCGC TTCCGCTG ACTCAACGCA chr2L:2857960-2858080 81 7.80e-05 ATTTAAGGTG TGCTGCTT TTGCCCCACT chr2L:4055562-4055682 63 9.83e-05 AGATAAATTT TTTTGCTG AATTTAAAGT chr3R:27167505-27167625 50 9.83e-05 TATGTTTAAC TTTTGCTG TGTACAATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8154146-8154266 6e-06 112_[+5] chr3R:25956195-25956315 6e-06 31_[+5]_81 chr2L:6463321-6463441 6e-06 91_[+5]_21 chr3R:26096211-26096331 6e-06 103_[+5]_9 chr3L:2796369-2796489 6e-06 82_[+5]_30 chr3R:14432019-14432139 6e-06 75_[+5]_37 chr2L:17380810-17380930 6e-06 56_[+5]_56 chr2R:13823806-13823926 6e-06 68_[+5]_44 chr3R:24720599-24720719 6e-06 5_[+5]_107 chr2L:10774245-10774365 6e-06 112_[+5] chr2L:2804674-2804794 9.4e-06 36_[+5]_76 chr2R:18894905-18895025 1.3e-05 103_[+5]_9 chrX:1083275-1083395 1.3e-05 47_[+5]_65 chr2L:12013947-12014067 3.5e-05 39_[+5]_73 chr3L:21080590-21080710 3.5e-05 65_[+5]_47 chr2R:14004777-14004897 3.5e-05 76_[+5]_36 chr2L:7277151-7277271 3.5e-05 76_[+5]_36 chr3R:22785048-22785168 4.1e-05 87_[+5]_25 chr3L:12692873-12692993 5.5e-05 108_[+5]_4 chr3L:5950626-5950746 5.5e-05 4_[+5]_108 chr2L:2857960-2858080 7.8e-05 80_[+5]_32 chr2L:4055562-4055682 9.8e-05 62_[+5]_50 chr3R:27167505-27167625 9.8e-05 49_[+5]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGCTG width=8 seqs=23 chr3R:8154146-8154266 ( 113) TGCTGCTG 1 chr3R:25956195-25956315 ( 32) TGCTGCTG 1 chr2L:6463321-6463441 ( 92) TGCTGCTG 1 chr3R:26096211-26096331 ( 104) TGCTGCTG 1 chr3L:2796369-2796489 ( 83) TGCTGCTG 1 chr3R:14432019-14432139 ( 76) TGCTGCTG 1 chr2L:17380810-17380930 ( 57) TGCTGCTG 1 chr2R:13823806-13823926 ( 69) TGCTGCTG 1 chr3R:24720599-24720719 ( 6) TGCTGCTG 1 chr2L:10774245-10774365 ( 113) TGCTGCTG 1 chr2L:2804674-2804794 ( 37) TGCCGCTG 1 chr2R:18894905-18895025 ( 104) GGCTGCTG 1 chrX:1083275-1083395 ( 48) GGCTGCTG 1 chr2L:12013947-12014067 ( 40) TGTTGCTG 1 chr3L:21080590-21080710 ( 66) TTCTGCTG 1 chr2R:14004777-14004897 ( 77) TGTTGCTG 1 chr2L:7277151-7277271 ( 77) TTCTGCTG 1 chr3R:22785048-22785168 ( 88) TGCAGCTG 1 chr3L:12692873-12692993 ( 109) TGTCGCTG 1 chr3L:5950626-5950746 ( 5) TTCCGCTG 1 chr2L:2857960-2858080 ( 81) TGCTGCTT 1 chr2L:4055562-4055682 ( 63) TTTTGCTG 1 chr3R:27167505-27167625 ( 50) TTTTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 1.3e-003 -1117 -1117 -100 148 -1117 -1117 217 -59 -1117 211 -1117 -59 -287 -48 -1117 134 -1117 -1117 253 -1117 -1117 246 -1117 -1117 -1117 -1117 -1117 161 -1117 -1117 246 -290 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.3e-003 0.000000 0.000000 0.086957 0.913043 0.000000 0.000000 0.782609 0.217391 0.000000 0.782609 0.000000 0.217391 0.043478 0.130435 0.000000 0.826087 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.956522 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGCTG MEME-5 regular expression -------------------------------------------------------------------------------- T[GT][CT]TGCTG -------------------------------------------------------------------------------- Time 32.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10774245-10774365 9.27e-09 34_[+5(3.48e-05)]_14_[+3(2.28e-05)]_\ 16_[+3(3.38e-06)]_9_[+3(3.38e-06)]_7_[+5(6.05e-06)] chr3R:16206281-16206401 3.59e-11 20_[+3(3.38e-06)]_4_[+1(3.29e-06)]_\ 25_[+2(3.21e-06)]_1_[+2(3.21e-06)]_1_[+2(3.21e-06)]_29 chr2L:7277151-7277271 4.43e-09 68_[+3(3.38e-06)]_[+5(3.48e-05)]_5_\ [+3(2.28e-05)]_10_[+3(3.38e-06)]_5 chr2R:11072659-11072779 6.86e-06 50_[+1(2.66e-05)]_24_[+4(2.83e-05)]_\ 30 chr2R:14004777-14004897 7.91e-09 55_[+3(2.28e-05)]_13_[+5(3.48e-05)]_\ 10_[+5(6.05e-06)]_2_[+3(3.38e-06)]_[+5(6.05e-06)] chr3L:14422225-14422345 9.44e-01 120 chr2R:18965368-18965488 1.74e-09 29_[+2(3.21e-06)]_10_[+2(3.21e-06)]_\ 10_[+4(5.87e-06)]_13_[+4(5.87e-06)]_26 chr3R:18787376-18787496 9.07e-01 120 chr3R:23787456-23787576 9.96e-01 120 chr3R:8038024-8038144 9.72e-01 120 chr3L:5950626-5950746 2.07e-08 4_[+5(5.49e-05)]_74_[+4(2.83e-05)]_\ 10_[+4(6.64e-05)]_[+4(5.87e-06)] chr3R:22785048-22785168 1.78e-10 37_[+4(4.51e-05)]_28_[+2(3.21e-06)]_\ 4_[+3(3.19e-05)]_4_[+2(3.21e-06)]_4_[+1(3.29e-06)]_3 chr2L:13272676-13272796 5.59e-10 2_[+4(5.87e-06)]_10_[+2(3.21e-06)]_\ 13_[+1(3.29e-06)]_10_[+2(4.70e-05)]_10_[+4(4.51e-05)]_7_[+4(4.51e-05)]_4_\ [+2(3.21e-06)]_8 chr3R:24720599-24720719 4.43e-09 5_[+5(6.05e-06)]_8_[+3(3.38e-06)]_\ 30_[+5(6.05e-06)]_26_[+3(3.38e-06)]_10_[+3(5.18e-06)]_1 chr2R:13823806-13823926 1.55e-11 11_[+3(5.18e-06)]_16_[+3(3.38e-06)]_\ 5_[+3(3.38e-06)]_10_[+3(3.38e-06)]_6_[+5(3.48e-05)]_2_[+3(3.38e-06)]_1_\ [+3(3.38e-06)]_13 chr2R:9557579-9557699 5.91e-01 120 chr3L:15005211-15005331 9.15e-01 120 chr3L:4383255-4383375 9.60e-01 120 chr3L:2117127-2117247 9.84e-01 120 chr3L:13028786-13028906 2.43e-10 3_[+2(3.21e-06)]_1_[+2(3.21e-06)]_\ 13_[+1(3.29e-06)]_7_[+2(3.21e-06)]_4_[+4(5.87e-06)]_52 chr3R:15631027-15631147 3.85e-01 120 chrX:9485294-9485414 3.09e-09 10_[+2(3.21e-06)]_52_[+2(3.21e-06)]_\ 7_[+2(2.88e-05)]_1_[+2(2.88e-05)]_4_[+4(5.87e-06)]_6 chr3L:2636519-2636639 1.63e-01 120 chr3L:15217433-15217553 2.67e-09 [+2(3.21e-06)]_4_[+1(6.20e-05)]_4_\ [+2(3.21e-06)]_8_[+4(3.44e-05)]_12_[+2(3.21e-06)]_10_[+4(5.87e-06)]_4_\ [+4(4.51e-05)]_22 chr3L:21080590-21080710 1.97e-02 65_[+5(3.48e-05)]_47 chr3L:7264182-7264302 1.41e-01 120 chr2L:17380810-17380930 1.81e-09 26_[+2(6.50e-06)]_4_[+3(3.38e-06)]_\ 11_[+3(3.38e-06)]_2_[+3(2.28e-05)]_1_[+3(3.38e-06)]_36 chr3R:31768366-31768486 8.07e-01 120 chr2L:14624011-14624131 1.49e-03 9_[+1(2.66e-05)]_103 chr2L:20721614-20721734 9.84e-01 120 chr3R:18998486-18998606 8.19e-01 120 chr2L:7175910-7176030 7.06e-01 120 chr3L:8372067-8372187 1.24e-08 3_[+2(3.21e-06)]_13_[+4(5.87e-06)]_\ 1_[+4(6.64e-05)]_[+2(3.21e-06)]_1_[+4(6.64e-05)]_[+2(3.21e-06)]_1_\ [+2(3.21e-06)]_12_[+4(5.87e-06)]_25 chr2L:18348781-18348901 6.31e-01 120 chr3R:14432019-14432139 5.49e-11 27_[+3(3.38e-06)]_[+5(3.48e-05)]_5_\ [+1(3.29e-06)]_3_[+3(1.02e-05)]_8_[+5(6.05e-06)]_37 chr2R:14031607-14031727 1.84e-08 93_[+2(3.21e-06)]_4_[+2(3.21e-06)]_\ 7 chr3L:4707984-4708104 3.56e-01 120 chr3L:12030656-12030776 9.27e-01 120 chr2R:21470551-21470671 3.34e-01 120 chr3L:2796369-2796489 2.29e-09 8_[+3(3.38e-06)]_7_[+3(3.38e-06)]_\ [+5(6.05e-06)]_7_[+5(6.05e-06)]_2_[+3(3.38e-06)]_[+5(1.26e-05)]_11_\ [+3(3.38e-06)]_29 chr3R:26096211-26096331 5.89e-09 8_[+3(3.38e-06)]_[+5(3.48e-05)]_7_\ [+5(3.48e-05)]_14_[+3(3.38e-06)]_10_[+3(3.38e-06)]_24_[+5(6.05e-06)]_9 chr3L:6371562-6371682 2.18e-01 120 chr3L:741873-741993 9.65e-01 120 chr3R:14007677-14007797 9.81e-01 120 chr3L:16974675-16974795 9.55e-01 120 chr2L:3582867-3582987 9.28e-01 120 chr3R:24996628-24996748 8.80e-02 120 chr2L:6463321-6463441 1.81e-09 21_[+3(3.38e-06)]_3_[+5(3.48e-05)]_\ 2_[+2(6.50e-06)]_4_[+3(3.38e-06)]_1_[+3(3.38e-06)]_20_[+5(6.05e-06)]_21 chr3L:787790-787910 4.94e-01 120 chr2R:17407774-17407894 5.66e-01 120 chr3L:12058567-12058687 9.92e-01 120 chr3R:21944160-21944280 2.45e-09 31_[+2(3.21e-06)]_7_[+2(3.21e-06)]_\ 1_[+2(3.21e-06)]_57 chr2L:4361567-4361687 1.54e-01 120 chr2L:19905365-19905485 9.88e-01 120 chr3R:31680015-31680135 5.96e-01 120 chr3L:9419483-9419603 9.44e-01 120 chr3L:6269107-6269227 9.09e-01 120 chr2L:646639-646759 9.38e-01 120 chr2L:19193847-19193967 1.43e-01 120 chr3L:12725855-12725975 1.42e-01 77_[+4(9.61e-05)]_35 chr3R:25956195-25956315 1.09e-09 2_[+3(3.38e-06)]_1_[+3(3.38e-06)]_\ 10_[+3(2.28e-05)]_1_[+3(2.28e-05)]_10_[+3(3.38e-06)]_7_[+3(3.38e-06)]_41 chr3R:9934990-9935110 6.44e-09 99_[+3(3.38e-06)]_13 chr3L:7611366-7611486 9.17e-01 120 chr4:505197-505317 3.15e-03 120 chr2L:2168680-2168800 6.49e-01 120 chr3R:14847329-14847449 1.65e-03 30_[+1(4.64e-05)]_82 chr3L:388293-388413 2.49e-01 120 chr3L:13263985-13264105 7.78e-01 120 chr2R:11755328-11755448 6.26e-01 120 chr3L:6396033-6396153 7.26e-01 120 chr3R:16368461-16368581 8.80e-04 70_[+1(4.64e-05)]_42 chr3L:14241241-14241361 9.24e-06 112_[+2(1.50e-05)] chr3R:18485500-18485620 2.14e-03 4_[+3(8.83e-05)]_108 chrX:7179422-7179542 6.97e-01 120 chr3R:31312435-31312555 8.13e-01 120 chr2R:14975306-14975426 9.81e-01 120 chr3L:16643127-16643247 8.93e-01 120 chr3L:4721997-4722117 9.71e-01 120 chr2R:14030243-14030363 8.07e-09 19_[+4(2.83e-05)]_10_[+2(3.21e-06)]_\ 1_[+2(3.21e-06)]_15_[+3(1.02e-05)]_9_[+4(5.87e-06)]_26 chr3R:27167505-27167625 2.93e-01 49_[+5(9.83e-05)]_63 chr3L:16752537-16752657 5.62e-01 120 chr3L:16218052-16218172 8.90e-01 120 chr2R:12013406-12013526 2.49e-03 40_[+2(8.39e-05)]_72 chr3R:11937571-11937691 2.15e-02 120 chrX:3436310-3436430 4.65e-06 5_[+4(5.87e-06)]_107 chr3L:5633716-5633836 4.81e-01 120 chr3R:31700355-31700475 7.21e-01 120 chr3R:19074368-19074488 9.38e-02 120 chr3R:20286200-20286320 9.13e-01 120 chr3L:6308759-6308879 8.64e-01 120 chr2R:17811103-17811223 9.94e-01 120 chrX:3931828-3931948 5.82e-03 107_[+4(1.61e-05)]_5 chr3L:14253585-14253705 6.56e-01 120 chr3R:8107083-8107203 5.56e-01 120 chr2R:23306099-23306219 9.69e-01 120 chr2L:1362365-1362485 5.76e-01 120 chr2R:21846139-21846259 9.90e-01 120 chr2L:1887864-1887984 1.51e-03 88_[+1(2.66e-05)]_24 chr2L:20371568-20371688 8.67e-01 120 chr3L:20552050-20552170 5.15e-01 120 chr3R:26496510-26496630 6.53e-01 120 chr3L:7264388-7264508 4.45e-01 120 chr3L:20635710-20635830 5.00e-01 120 chr3R:10832643-10832763 4.92e-01 120 chr2R:22737966-22738086 7.57e-01 120 chr2R:18256965-18257085 9.83e-01 120 chr2R:16212907-16213027 7.20e-01 120 chr2L:7949928-7950048 2.04e-03 120 chr3L:9566981-9567101 8.48e-01 120 chr3L:2802187-2802307 9.80e-01 120 chr2L:20802347-20802467 8.74e-02 120 chr2R:20162672-20162792 5.25e-01 120 chr3L:12692873-12692993 4.43e-09 2_[+3(3.38e-06)]_14_[+3(3.38e-06)]_\ 1_[+3(3.38e-06)]_71_[+1(1.51e-05)] chr2L:18344460-18344580 1.04e-03 65_[+1(2.66e-05)]_47 chr3R:30689781-30689901 4.66e-01 120 chr3L:2549062-2549182 2.15e-01 120 chr3L:1859675-1859795 1.59e-04 47_[+2(4.36e-05)]_65 chr3R:29094297-29094417 6.93e-01 120 chr3L:6482999-6483119 3.50e-01 120 chr3R:6954712-6954832 8.85e-01 120 chr2L:3012879-3012999 1.73e-01 120 chr3R:29538572-29538692 5.57e-01 120 chr3L:14622544-14622664 4.95e-01 120 chr3R:31706246-31706366 1.03e-02 84_[+4(1.61e-05)]_28 chrX:2455523-2455643 8.43e-01 120 chrX:4175964-4176084 4.43e-03 120 chr3L:1880821-1880941 5.02e-01 120 chr2L:4071714-4071834 7.91e-01 120 chr2L:5623860-5623980 6.81e-04 53_[+4(3.44e-05)]_59 chr2L:4348703-4348823 9.39e-02 120 chr2L:7619384-7619504 7.68e-01 120 chr2L:5483239-5483359 1.49e-01 120 chr2R:20065634-20065754 7.95e-02 120 chr3R:8469792-8469912 9.46e-01 120 chr3R:30164255-30164375 1.42e-01 120 chr3L:1320635-1320755 6.57e-01 120 chr3L:10928837-10928957 3.68e-01 120 chr2R:10656075-10656195 9.96e-01 120 chr2L:6991225-6991345 9.81e-01 120 chr3R:11338434-11338554 2.37e-01 120 chr2L:6197912-6198032 4.87e-02 120 chr3L:14451693-14451813 7.15e-01 120 chr2L:6508802-6508922 9.88e-01 120 chr3R:14684075-14684195 8.57e-01 120 chr3L:14984617-14984737 9.88e-01 120 chr2L:2162738-2162858 4.92e-04 50_[+4(2.83e-05)]_62 chr3L:2533852-2533972 8.38e-01 120 chr3L:14534771-14534891 9.89e-01 120 chr3R:20284684-20284804 9.10e-01 120 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chr2R:19849198-19849318 1.49e-01 120 chr3R:22195817-22195937 2.85e-02 120 chr3L:16204211-16204331 9.38e-02 120 chr2L:5080649-5080769 6.55e-01 120 chr3R:30096007-30096127 1.28e-01 120 chr3R:23486871-23486991 1.00e+00 120 chr3R:16718112-16718232 3.18e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************