******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3838.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:6732256-6732376 1.0000 120 chrX:10621765-10621885 1.0000 120 chr3L:690461-690581 1.0000 120 chr3L:5950662-5950782 1.0000 120 chr3L:8623848-8623968 1.0000 120 chrX:6732459-6732579 1.0000 120 chr2R:24540560-24540680 1.0000 120 chr3L:20296906-20297026 1.0000 120 chr3R:25883947-25884067 1.0000 120 chr3L:11284763-11284883 1.0000 120 chr2L:19363753-19363873 1.0000 120 chr2L:21828047-21828167 1.0000 120 chr3R:8806269-8806389 1.0000 120 chr3R:24130205-24130325 1.0000 120 chr3L:12773491-12773611 1.0000 120 chrX:6759511-6759631 1.0000 120 chr2R:12439827-12439947 1.0000 120 chr2R:14004624-14004744 1.0000 120 chrX:9142379-9142499 1.0000 120 chr2R:14419866-14419986 1.0000 120 chr3R:11437696-11437816 1.0000 120 chr2R:17683092-17683212 1.0000 120 chr2L:9167093-9167213 1.0000 120 chr3R:24134731-24134851 1.0000 120 chr2R:20308632-20308752 1.0000 120 chr3L:21240345-21240465 1.0000 120 chr2R:22640136-22640256 1.0000 120 chr3L:10363485-10363605 1.0000 120 chr2L:3159480-3159600 1.0000 120 chr2R:17078400-17078520 1.0000 120 chrX:10472687-10472807 1.0000 120 chr3L:8912394-8912514 1.0000 120 chr2R:10582877-10582997 1.0000 120 chr3R:14819951-14820071 1.0000 120 chr2R:9444784-9444904 1.0000 120 chr2R:18094667-18094787 1.0000 120 chr3L:18239643-18239763 1.0000 120 chr2R:21475066-21475186 1.0000 120 chr2R:17436537-17436657 1.0000 120 chr2L:8478104-8478224 1.0000 120 chr2R:15750758-15750878 1.0000 120 chr2L:18947621-18947741 1.0000 120 chr2L:5208627-5208747 1.0000 120 chr2L:9568372-9568492 1.0000 120 chr2R:12571943-12572063 1.0000 120 chrX:2652488-2652608 1.0000 120 chr2L:14494983-14495103 1.0000 120 chr3L:5634545-5634665 1.0000 120 chr2R:24956009-24956129 1.0000 120 chr3R:28326986-28327106 1.0000 120 chr2R:14030249-14030369 1.0000 120 chrX:6700134-6700254 1.0000 120 chr3R:10617235-10617355 1.0000 120 chr3L:3410150-3410270 1.0000 120 chr3L:10766606-10766726 1.0000 120 chr3L:11295277-11295397 1.0000 120 chrX:13563988-13564108 1.0000 120 chr2R:15735139-15735259 1.0000 120 chrX:6219839-6219959 1.0000 120 chr2L:18944844-18944964 1.0000 120 chr2L:9570747-9570867 1.0000 120 chr2L:16268428-16268548 1.0000 120 chr2L:21628964-21629084 1.0000 120 chrX:9135064-9135184 1.0000 120 chr3R:31213354-31213474 1.0000 120 chr2R:19631093-19631213 1.0000 120 chr2R:11657873-11657993 1.0000 120 chr3R:21629634-21629754 1.0000 120 chr2L:3000585-3000705 1.0000 120 chr3L:21261717-21261837 1.0000 120 chr3R:11236195-11236315 1.0000 120 chr2R:10618340-10618460 1.0000 120 chr3R:14018680-14018800 1.0000 120 chr2L:16520093-16520213 1.0000 120 chr2L:5799314-5799434 1.0000 120 chr2R:14503561-14503681 1.0000 120 chrX:6862668-6862788 1.0000 120 chr2R:19420786-19420906 1.0000 120 chr3R:6426327-6426447 1.0000 120 chr2R:17803976-17804096 1.0000 120 chrX:10739045-10739165 1.0000 120 chr3R:15913354-15913474 1.0000 120 chr3R:29771812-29771932 1.0000 120 chr2R:11453441-11453561 1.0000 120 chr2R:11604880-11605000 1.0000 120 chr3R:19860838-19860958 1.0000 120 chr2R:17822305-17822425 1.0000 120 chr3R:5060680-5060800 1.0000 120 chr2R:17869420-17869540 1.0000 120 chr3L:1464621-1464741 1.0000 120 chr3R:10614449-10614569 1.0000 120 chr3L:1546039-1546159 1.0000 120 chr3R:21633860-21633980 1.0000 120 chrX:10802207-10802327 1.0000 120 chr2R:5122204-5122324 1.0000 120 chr2L:6644683-6644803 1.0000 120 chr3R:24768021-24768141 1.0000 120 chr2R:11198306-11198426 1.0000 120 chr2L:12007070-12007190 1.0000 120 chr2L:3575899-3576019 1.0000 120 chr2L:16321356-16321476 1.0000 120 chrX:2653614-2653734 1.0000 120 chr2R:6964838-6964958 1.0000 120 chr3L:11285065-11285185 1.0000 120 chr2R:16209730-16209850 1.0000 120 chr2L:19159047-19159167 1.0000 120 chr3R:29479303-29479423 1.0000 120 chrX:17658464-17658584 1.0000 120 chr3L:1177127-1177247 1.0000 120 chrX:14211621-14211741 1.0000 120 chr2L:12507848-12507968 1.0000 120 chr3R:11759501-11759621 1.0000 120 chr2R:10558888-10559008 1.0000 120 chr3R:24630113-24630233 1.0000 120 chr3R:21835647-21835767 1.0000 120 chr2L:19312623-19312743 1.0000 120 chr3L:224568-224688 1.0000 120 chr2R:9284005-9284125 1.0000 120 chr2R:6156684-6156804 1.0000 120 chr2L:14497808-14497928 1.0000 120 chr2R:7694399-7694519 1.0000 120 chr2R:11175450-11175570 1.0000 120 chr3R:21852812-21852932 1.0000 120 chr2R:7890069-7890189 1.0000 120 chr2R:18322179-18322299 1.0000 120 chr2L:12010226-12010346 1.0000 120 chr3L:21205135-21205255 1.0000 120 chr2R:9865560-9865680 1.0000 120 chr3R:14714230-14714350 1.0000 120 chrX:7947048-7947168 1.0000 120 chr2L:21237119-21237239 1.0000 120 chr3R:16847487-16847607 1.0000 120 chr3R:11568772-11568892 1.0000 120 chr3L:22277354-22277474 1.0000 120 chr3R:14748521-14748641 1.0000 120 chr2L:7027148-7027268 1.0000 120 chr3R:12398843-12398963 1.0000 120 chr2R:18180033-18180153 1.0000 120 chr2L:15501216-15501336 1.0000 120 chr2R:11603434-11603554 1.0000 120 chr2R:11582327-11582447 1.0000 120 chr2R:14031672-14031792 1.0000 120 chr2R:12168912-12169032 1.0000 120 chrX:17160469-17160589 1.0000 120 chr3R:21660698-21660818 1.0000 120 chr3L:14625081-14625201 1.0000 120 chr3R:21271302-21271422 1.0000 120 chr2L:13838777-13838897 1.0000 120 chr3L:3394426-3394546 1.0000 120 chr3R:26876556-26876676 1.0000 120 chr3L:616727-616847 1.0000 120 chrX:1380438-1380558 1.0000 120 chr3R:26980164-26980284 1.0000 120 chr3L:15626175-15626295 1.0000 120 chr3L:7249327-7249447 1.0000 120 chrX:10212099-10212219 1.0000 120 chr3L:698976-699096 1.0000 120 chr2R:19357481-19357601 1.0000 120 chr3L:3390645-3390765 1.0000 120 chrX:15591787-15591907 1.0000 120 chr2L:3862605-3862725 1.0000 120 chr3R:12716418-12716538 1.0000 120 chr2L:9576774-9576894 1.0000 120 chr2L:14024291-14024411 1.0000 120 chr2R:21000232-21000352 1.0000 120 chr3R:21829558-21829678 1.0000 120 chr2R:21312367-21312487 1.0000 120 chr3R:24105637-24105757 1.0000 120 chr3R:5076838-5076958 1.0000 120 chr2L:7043206-7043326 1.0000 120 chr2L:18454585-18454705 1.0000 120 chr2L:7158988-7159108 1.0000 120 chr3L:14131769-14131889 1.0000 120 chr2L:8825665-8825785 1.0000 120 chr3R:25074653-25074773 1.0000 120 chr3R:10863063-10863183 1.0000 120 chr2L:7998838-7998958 1.0000 120 chr3R:20328283-20328403 1.0000 120 chr3R:26566946-26567066 1.0000 120 chr3L:1794235-1794355 1.0000 120 chr3L:11790028-11790148 1.0000 120 chr2L:8009536-8009656 1.0000 120 chr3R:27559053-27559173 1.0000 120 chr2L:2494649-2494769 1.0000 120 chr2L:13550757-13550877 1.0000 120 chr3R:22367201-22367321 1.0000 120 chr3R:15347934-15348054 1.0000 120 chr3R:12980671-12980791 1.0000 120 chr2R:18811955-18812075 1.0000 120 chrX:17175869-17175989 1.0000 120 chr3R:26235185-26235305 1.0000 120 chr2L:1427973-1428093 1.0000 120 chr3R:10140328-10140448 1.0000 120 chr2R:21091922-21092042 1.0000 120 chr2L:17384624-17384744 1.0000 120 chr2R:15135590-15135710 1.0000 120 chr3R:26230245-26230365 1.0000 120 chr2R:14000787-14000907 1.0000 120 chrX:16296552-16296672 1.0000 120 chr3R:14285199-14285319 1.0000 120 chr3R:9430506-9430626 1.0000 120 chr2R:18775380-18775500 1.0000 120 chr3L:10767543-10767663 1.0000 120 chr3R:16282279-16282399 1.0000 120 chr2R:17766957-17767077 1.0000 120 chr2R:12274289-12274409 1.0000 120 chr3L:19040310-19040430 1.0000 120 chr3L:11273847-11273967 1.0000 120 chr3R:16276208-16276328 1.0000 120 chrX:8624957-8625077 1.0000 120 chr3R:13016406-13016526 1.0000 120 chr3R:19164427-19164547 1.0000 120 chr3R:16005209-16005329 1.0000 120 chr2L:13833170-13833290 1.0000 120 chr2R:14494821-14494941 1.0000 120 chr2R:9554105-9554225 1.0000 120 chr3R:16704372-16704492 1.0000 120 chr2R:11605081-11605201 1.0000 120 chr2R:18242146-18242266 1.0000 120 chr3L:6609328-6609448 1.0000 120 chr3R:4996569-4996689 1.0000 120 chr2R:10023911-10024031 1.0000 120 chrX:20506083-20506203 1.0000 120 chr3R:21017623-21017743 1.0000 120 chr4:56231-56351 1.0000 120 chr3R:21200155-21200275 1.0000 120 chr3L:4614080-4614200 1.0000 120 chr3L:629601-629721 1.0000 120 chr2R:24402742-24402862 1.0000 120 chr2R:7488720-7488840 1.0000 120 chrX:11548776-11548896 1.0000 120 chr3L:21961990-21962110 1.0000 120 chr3R:21865172-21865292 1.0000 120 chrX:4427079-4427199 1.0000 120 chr2L:16476575-16476695 1.0000 120 chr3L:3450736-3450856 1.0000 120 chr3R:8033234-8033354 1.0000 120 chr3R:29869207-29869327 1.0000 120 chr3R:20542405-20542525 1.0000 120 chr3R:7103602-7103722 1.0000 120 chr2R:14008449-14008569 1.0000 120 chr2R:10478152-10478272 1.0000 120 chrX:7333346-7333466 1.0000 120 chr3L:361316-361436 1.0000 120 chr3L:8525152-8525272 1.0000 120 chr2L:16269282-16269402 1.0000 120 chr2L:21629168-21629288 1.0000 120 chrX:11622195-11622315 1.0000 120 chr2R:22174684-22174804 1.0000 120 chrX:11715440-11715560 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG3838/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3838.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.287 C 0.217 G 0.216 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.287 C 0.217 G 0.216 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KTTGTTGY MEME-1 width = 8 sites = 69 llr = 610 E-value = 6.4e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTGTTGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :1::2::6 probability G 6::a::a: matrix T 49a:8a:4 bits 2.2 * * 2.0 * * 1.8 ** ** 1.5 ** ** Relative 1.3 *** ** Entropy 1.1 ******** (12.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTGTTGC consensus T C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGTTGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7103602-7103722 26 1.36e-05 CCTCTCTATT GTTGTTGC TCTTTAATAT chr3L:629601-629721 31 1.36e-05 agctgctctt gttgttgc tgAATTTCAG chr2R:18242146-18242266 92 1.36e-05 CGTTACACAG GTtgttgc tgttgccgcc chrX:8624957-8625077 97 1.36e-05 GGGCATACGC GTTGTTGC TGCGAGTGGG chr2R:15135590-15135710 37 1.36e-05 AGCGGATGTT GTTGTTGC TGGcagaaga chr3R:10863063-10863183 97 1.36e-05 TCGATTTCAT GTTGTTGC GTCGCCGGTC chr3L:15626175-15626295 49 1.36e-05 CAGTGTTTGT GTTGTTGC CTGGCTTTGT chr2R:11603434-11603554 9 1.36e-05 ttgttatt gttgttgC TTTCTGCTGT chr2R:7890069-7890189 74 1.36e-05 cttgtcggcg gttgttgc aggttgcCGT chr3R:11759501-11759621 83 1.36e-05 tgccgctgat gttgttgc tgctgctgct chr3L:1177127-1177247 5 1.36e-05 actt gttgttgc ttttgctttg chrX:17658464-17658584 85 1.36e-05 tgtcgctgat gttgttgc attgttgttg chr2L:12007070-12007190 28 1.36e-05 gtgatgttgt gttgttgc tgtgttgtcg chr2R:17869420-17869540 27 1.36e-05 ACGTAGTTTA GTTGTTGC GCCTGTCTGC chr3R:15913354-15913474 104 1.36e-05 ttgccctgct gttgttgc ggcaacatg chr2R:19420786-19420906 16 1.36e-05 GCAGCAGTTT GTTGTTGC ACGATGCGGC chr2L:5799314-5799434 19 1.36e-05 CCTGCTGttt gttgttgc tgtcgcctcg chr2R:24956009-24956129 36 1.36e-05 actgttgtgc gttgttgc tgctttttaa chr3L:5634545-5634665 4 1.36e-05 ttt gttgttgc tgCCTTGACA chr2R:9444784-9444904 104 1.36e-05 CGCCGTCGCT GTTGTTGC AATGCTTGT chr3L:10363485-10363605 53 1.36e-05 tcctgttgtt gttgttgc tgtttgttgG chr3R:16005209-16005329 25 3.13e-05 GCTGGTTGCC GTTGTTGT TCTTGTTTTT chr3R:27559053-27559173 61 3.13e-05 GCGATGTTGT GTTGTTGT TCATCGTTCG chrX:2653614-2653734 77 3.13e-05 ACCCAACATT GTTGTTGT TTTGTCATGT chrX:10802207-10802327 4 3.13e-05 GTT GTTGTTGT TCGTTTTTCT chr2R:17803976-17804096 102 3.13e-05 tgttgttgtt gttgttgt cattgttgct chr2R:17436537-17436657 33 3.13e-05 GGTGGCTACT GTTGTTGT GTGCATTGAA chr2R:14419866-14419986 111 3.13e-05 tgctgctatt gttgttgt tg chr3L:690461-690581 79 3.13e-05 TTGTCGCACT GTTGTTGT CGCCTTTGTG chr3R:21017623-21017743 88 4.90e-05 CAATCGATTA TTTGTTGC ATATGTTGTT chr2R:14000787-14000907 27 4.90e-05 CATCGCTCTC TTTGTTGC ATGGGTATTG chr2L:13550757-13550877 11 4.90e-05 TTTAATGCAT TTTGTTGC GTTTGCGCCG chr2R:9865560-9865680 8 4.90e-05 GGACAAT TTTGTTGC TTGTTGAACA chr2R:18322179-18322299 51 4.90e-05 TATTATTGTT TTTGTTGC TCCTGTTTCG chr2L:16321356-16321476 52 4.90e-05 TTCTTGTTGC TTTGTTGC TTGTCTTTAA chr2L:18944844-18944964 73 4.90e-05 tgtttgttcg tttgttGC CTCGCCATGG chr2R:17683092-17683212 113 4.90e-05 TGAAAACCTG TTTGTTGC chr2L:14497808-14497928 68 5.96e-05 TTGTGACATT GTTGCTGC TGTTAGCCTG chr3R:14819951-14820071 8 5.96e-05 tctcact gttgctgc tgccgcgacg chrX:11715440-11715560 40 8.25e-05 GTTCGCTGCT TTTGTTGT GCCAGTTGCC chr2R:22174684-22174804 54 8.25e-05 TTGCATGTTG TTTGTTGT ATGAAAAAGC chr3L:3450736-3450856 34 8.25e-05 GCACATGGCT TTTGTTGT TTTTGGCAAC chr3R:21865172-21865292 37 8.25e-05 GCTGTTTACA TTTGTTGT GATTAATTTT chr2R:11582327-11582447 13 8.25e-05 AAGCGTTAAA TTTGTTGT ATTTTGTTTA chr2R:17822305-17822425 44 8.25e-05 CAGcgtcgtt tttgttgt cgtgccgtcg chr3R:14018680-14018800 45 8.25e-05 AACATTTCTG TTTGTTGt ttcgcattcg chr2R:11657873-11657993 86 8.25e-05 CCGTTTCGCA TTTGTTGT AACGGTCTCG chr2R:19631093-19631213 21 8.25e-05 CGGGTTTTAT TTTGTTGT TATTTTGTCA chr2L:9568372-9568492 30 8.25e-05 GTTTGTCTTA TTTGTTGT TCGTTGCCAG chrX:6759511-6759631 54 8.25e-05 AGATACTTGT TTTGTTGT TTGTTAGTTT chr3L:10767543-10767663 98 9.62e-05 CGTTCgttgt gttgctgt tgctgatgtt chr3R:16847487-16847607 99 9.62e-05 gattgctgat gttgctgt cgtctttgga chr3R:24630113-24630233 40 9.62e-05 CCGCACAACT GTTGCTGT TACTCTCCAA chr3L:8912394-8912514 105 9.62e-05 TATTGGTGGG GTTGCTGT GGCAGCAA chr3L:8525152-8525272 14 1.10e-04 gtttttaata tttGCTGC AAGAGGTTAC chr2R:14008449-14008569 55 1.10e-04 ACCGCCTGCA TTTGCTGC GCGCCTGGTA chr2L:14024291-14024411 10 1.10e-04 acttgtttg tttgctgc tagttgatat chr3L:616727-616847 41 1.10e-04 TCTCTTGTTG TTTGCTGC CGTTGGTTTT chr4:56231-56351 86 1.20e-04 ATTAACACTA GCTGTTGC AATGCTTCGT chr3R:11568772-11568892 32 1.20e-04 CCGTGCAACA GCTGTTGC GTTTGTAAAA chr3R:6426327-6426447 25 1.20e-04 TTGCGTGAGC GCTGTTGC CAAACTTCAG chr2R:9554105-9554225 68 1.38e-04 TGTTGGTCTT TTTGCTGT TGCCAAGAGT chr3R:26876556-26876676 101 1.38e-04 GTTTGTTAGT TTTGCTGT TTGGTTTTTA chr3R:19860838-19860958 103 1.38e-04 CTGTTGTGAT TTTGCTGT AGCTGATGCA chr2L:16520093-16520213 68 1.38e-04 CTTTTTTTTG TTTGCTGT GCGCGAAAGC chr2R:7488720-7488840 51 1.65e-04 tatctctctc tctGTTGC TTTTGCCGCt chr2R:14494821-14494941 50 1.91e-04 GGCTGGCTTT TCTGTTGT GATCAAAAGT chrX:6700134-6700254 9 1.91e-04 ATTTTGAT TCTGTTGT ATGTGAAAAA chr2L:9570747-9570867 77 2.02e-04 TGCCATTGTC GCTGCTGT GGCTATAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGTTGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7103602-7103722 1.4e-05 25_[+1]_87 chr3L:629601-629721 1.4e-05 30_[+1]_82 chr2R:18242146-18242266 1.4e-05 91_[+1]_21 chrX:8624957-8625077 1.4e-05 96_[+1]_16 chr2R:15135590-15135710 1.4e-05 36_[+1]_76 chr3R:10863063-10863183 1.4e-05 96_[+1]_16 chr3L:15626175-15626295 1.4e-05 48_[+1]_64 chr2R:11603434-11603554 1.4e-05 8_[+1]_104 chr2R:7890069-7890189 1.4e-05 73_[+1]_39 chr3R:11759501-11759621 1.4e-05 82_[+1]_30 chr3L:1177127-1177247 1.4e-05 4_[+1]_108 chrX:17658464-17658584 1.4e-05 84_[+1]_28 chr2L:12007070-12007190 1.4e-05 27_[+1]_85 chr2R:17869420-17869540 1.4e-05 26_[+1]_86 chr3R:15913354-15913474 1.4e-05 103_[+1]_9 chr2R:19420786-19420906 1.4e-05 15_[+1]_97 chr2L:5799314-5799434 1.4e-05 18_[+1]_94 chr2R:24956009-24956129 1.4e-05 35_[+1]_77 chr3L:5634545-5634665 1.4e-05 3_[+1]_109 chr2R:9444784-9444904 1.4e-05 103_[+1]_9 chr3L:10363485-10363605 1.4e-05 52_[+1]_60 chr3R:16005209-16005329 3.1e-05 24_[+1]_88 chr3R:27559053-27559173 3.1e-05 60_[+1]_52 chrX:2653614-2653734 3.1e-05 76_[+1]_36 chrX:10802207-10802327 3.1e-05 3_[+1]_109 chr2R:17803976-17804096 3.1e-05 101_[+1]_11 chr2R:17436537-17436657 3.1e-05 32_[+1]_80 chr2R:14419866-14419986 3.1e-05 110_[+1]_2 chr3L:690461-690581 3.1e-05 78_[+1]_34 chr3R:21017623-21017743 4.9e-05 87_[+1]_25 chr2R:14000787-14000907 4.9e-05 26_[+1]_86 chr2L:13550757-13550877 4.9e-05 10_[+1]_102 chr2R:9865560-9865680 4.9e-05 7_[+1]_105 chr2R:18322179-18322299 4.9e-05 50_[+1]_62 chr2L:16321356-16321476 4.9e-05 51_[+1]_61 chr2L:18944844-18944964 4.9e-05 72_[+1]_40 chr2R:17683092-17683212 4.9e-05 112_[+1] chr2L:14497808-14497928 6e-05 67_[+1]_45 chr3R:14819951-14820071 6e-05 7_[+1]_105 chrX:11715440-11715560 8.3e-05 39_[+1]_73 chr2R:22174684-22174804 8.3e-05 53_[+1]_59 chr3L:3450736-3450856 8.3e-05 33_[+1]_79 chr3R:21865172-21865292 8.3e-05 36_[+1]_76 chr2R:11582327-11582447 8.3e-05 12_[+1]_100 chr2R:17822305-17822425 8.3e-05 43_[+1]_69 chr3R:14018680-14018800 8.3e-05 44_[+1]_68 chr2R:11657873-11657993 8.3e-05 85_[+1]_27 chr2R:19631093-19631213 8.3e-05 20_[+1]_92 chr2L:9568372-9568492 8.3e-05 29_[+1]_83 chrX:6759511-6759631 8.3e-05 53_[+1]_59 chr3L:10767543-10767663 9.6e-05 97_[+1]_15 chr3R:16847487-16847607 9.6e-05 98_[+1]_14 chr3R:24630113-24630233 9.6e-05 39_[+1]_73 chr3L:8912394-8912514 9.6e-05 104_[+1]_8 chr3L:8525152-8525272 0.00011 13_[+1]_99 chr2R:14008449-14008569 0.00011 54_[+1]_58 chr2L:14024291-14024411 0.00011 9_[+1]_103 chr3L:616727-616847 0.00011 40_[+1]_72 chr4:56231-56351 0.00012 85_[+1]_27 chr3R:11568772-11568892 0.00012 31_[+1]_81 chr3R:6426327-6426447 0.00012 24_[+1]_88 chr2R:9554105-9554225 0.00014 67_[+1]_45 chr3R:26876556-26876676 0.00014 100_[+1]_12 chr3R:19860838-19860958 0.00014 102_[+1]_10 chr2L:16520093-16520213 0.00014 67_[+1]_45 chr2R:7488720-7488840 0.00017 50_[+1]_62 chr2R:14494821-14494941 0.00019 49_[+1]_63 chrX:6700134-6700254 0.00019 8_[+1]_104 chr2L:9570747-9570867 0.0002 76_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGTTGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTGTTGY width=8 seqs=69 chr3R:7103602-7103722 ( 26) GTTGTTGC 1 chr3L:629601-629721 ( 31) GTTGTTGC 1 chr2R:18242146-18242266 ( 92) GTTGTTGC 1 chrX:8624957-8625077 ( 97) GTTGTTGC 1 chr2R:15135590-15135710 ( 37) GTTGTTGC 1 chr3R:10863063-10863183 ( 97) GTTGTTGC 1 chr3L:15626175-15626295 ( 49) GTTGTTGC 1 chr2R:11603434-11603554 ( 9) GTTGTTGC 1 chr2R:7890069-7890189 ( 74) GTTGTTGC 1 chr3R:11759501-11759621 ( 83) GTTGTTGC 1 chr3L:1177127-1177247 ( 5) GTTGTTGC 1 chrX:17658464-17658584 ( 85) GTTGTTGC 1 chr2L:12007070-12007190 ( 28) GTTGTTGC 1 chr2R:17869420-17869540 ( 27) GTTGTTGC 1 chr3R:15913354-15913474 ( 104) GTTGTTGC 1 chr2R:19420786-19420906 ( 16) GTTGTTGC 1 chr2L:5799314-5799434 ( 19) GTTGTTGC 1 chr2R:24956009-24956129 ( 36) GTTGTTGC 1 chr3L:5634545-5634665 ( 4) GTTGTTGC 1 chr2R:9444784-9444904 ( 104) GTTGTTGC 1 chr3L:10363485-10363605 ( 53) GTTGTTGC 1 chr3R:16005209-16005329 ( 25) GTTGTTGT 1 chr3R:27559053-27559173 ( 61) GTTGTTGT 1 chrX:2653614-2653734 ( 77) GTTGTTGT 1 chrX:10802207-10802327 ( 4) GTTGTTGT 1 chr2R:17803976-17804096 ( 102) GTTGTTGT 1 chr2R:17436537-17436657 ( 33) GTTGTTGT 1 chr2R:14419866-14419986 ( 111) GTTGTTGT 1 chr3L:690461-690581 ( 79) GTTGTTGT 1 chr3R:21017623-21017743 ( 88) TTTGTTGC 1 chr2R:14000787-14000907 ( 27) TTTGTTGC 1 chr2L:13550757-13550877 ( 11) TTTGTTGC 1 chr2R:9865560-9865680 ( 8) TTTGTTGC 1 chr2R:18322179-18322299 ( 51) TTTGTTGC 1 chr2L:16321356-16321476 ( 52) TTTGTTGC 1 chr2L:18944844-18944964 ( 73) TTTGTTGC 1 chr2R:17683092-17683212 ( 113) TTTGTTGC 1 chr2L:14497808-14497928 ( 68) GTTGCTGC 1 chr3R:14819951-14820071 ( 8) GTTGCTGC 1 chrX:11715440-11715560 ( 40) TTTGTTGT 1 chr2R:22174684-22174804 ( 54) TTTGTTGT 1 chr3L:3450736-3450856 ( 34) TTTGTTGT 1 chr3R:21865172-21865292 ( 37) TTTGTTGT 1 chr2R:11582327-11582447 ( 13) TTTGTTGT 1 chr2R:17822305-17822425 ( 44) TTTGTTGT 1 chr3R:14018680-14018800 ( 45) TTTGTTGT 1 chr2R:11657873-11657993 ( 86) TTTGTTGT 1 chr2R:19631093-19631213 ( 21) TTTGTTGT 1 chr2L:9568372-9568492 ( 30) TTTGTTGT 1 chrX:6759511-6759631 ( 54) TTTGTTGT 1 chr3L:10767543-10767663 ( 98) GTTGCTGT 1 chr3R:16847487-16847607 ( 99) GTTGCTGT 1 chr3R:24630113-24630233 ( 40) GTTGCTGT 1 chr3L:8912394-8912514 ( 105) GTTGCTGT 1 chr3L:8525152-8525272 ( 14) TTTGCTGC 1 chr2R:14008449-14008569 ( 55) TTTGCTGC 1 chr2L:14024291-14024411 ( 10) TTTGCTGC 1 chr3L:616727-616847 ( 41) TTTGCTGC 1 chr4:56231-56351 ( 86) GCTGTTGC 1 chr3R:11568772-11568892 ( 32) GCTGTTGC 1 chr3R:6426327-6426447 ( 25) GCTGTTGC 1 chr2R:9554105-9554225 ( 68) TTTGCTGT 1 chr3R:26876556-26876676 ( 101) TTTGCTGT 1 chr3R:19860838-19860958 ( 103) TTTGCTGT 1 chr2L:16520093-16520213 ( 68) TTTGCTGT 1 chr2R:7488720-7488840 ( 51) TCTGTTGC 1 chr2R:14494821-14494941 ( 50) TCTGTTGT 1 chrX:6700134-6700254 ( 9) TCTGTTGT 1 chr2L:9570747-9570867 ( 77) GCTGCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGTTGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 6.4e-042 -1275 -1275 139 63 -1275 -110 -1275 168 -1275 -1275 -1275 183 -1275 -1275 221 -1275 -1275 0 -1275 148 -1275 -1275 -1275 183 -1275 -1275 221 -1275 -1275 138 -1275 63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGTTGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 6.4e-042 0.000000 0.000000 0.565217 0.434783 0.000000 0.101449 0.000000 0.898551 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.217391 0.000000 0.782609 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.565217 0.000000 0.434783 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTGTTGY MEME-1 regular expression -------------------------------------------------------------------------------- [GT]TTG[TC]TG[CT] -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF MARCAACA MEME-2 width = 8 sites = 106 llr = 823 E-value = 3.9e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif MARCAACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 494:a929 pos.-specific C 5::a::8: probability G ::6::1:1 matrix T :1:::::: bits 2.2 * 2.0 * 1.8 * 1.5 * ** * Relative 1.3 * ***** Entropy 1.1 * ***** (11.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAACA consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MARCAACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16005209-16005329 72 1.50e-05 AAAACGACAA CAGCAACA AAATCTGAAA chr3R:14285199-14285319 51 1.50e-05 TCAACAGCGC CAGCAACA AAACAAACAG chr2R:14000787-14000907 113 1.50e-05 acatcagcag cagcaaca chr2L:8825665-8825785 70 1.50e-05 caacatcacg cagcaaca tcaactcggt chr2R:14031672-14031792 72 1.50e-05 gcaacagcaa cagcaaca cgacgccagc chr2L:21237119-21237239 66 1.50e-05 TGGCAGTGTG CAGCAACA GCTCGCAGAA chr2R:7694399-7694519 19 1.50e-05 acaacaataa cagcaaca agaacaacaa chr3L:224568-224688 63 1.50e-05 GTAGCTTAAG CAGCAACA ATGGCAACCA chr2L:12507848-12507968 46 1.50e-05 cgctgcccat cagcaaca TCGTCGACAA chrX:14211621-14211741 13 1.50e-05 GGCCGAAATG CAGCAACA TATGCAATGA chr3L:11285065-11285185 40 1.50e-05 AAAGTAACAA CAGCAACA AAAGAGGAAG chr2R:17822305-17822425 104 1.50e-05 GAaacagcgg cagcaaca acaaaaaca chr3R:31213354-31213474 105 1.50e-05 AGACTTAGGC CAGCAACA ATCGATAA chr3L:3410150-3410270 43 1.50e-05 attgcaacag cagcaaca TCGGTCGAGA chrX:6700134-6700254 110 1.50e-05 gccgcagcag cagcaaca aca chr2R:14030249-14030369 68 1.50e-05 aacgcagcgg cagcaaca tcaccgcaac chr2L:9568372-9568492 45 1.50e-05 TGTTCGTTGC CAGCAACA ACAATAAAAA chr3L:21240345-21240465 80 1.50e-05 CATCAAGCAG CAGCAACA ACAGTGATTC chr2L:9167093-9167213 57 1.50e-05 TAACAAATTG CAGCAACA ACGTCACACG chr3L:11284763-11284883 89 1.50e-05 GCAACATTAA CAGCAACA TGTGGAACCT chr3L:5950662-5950782 58 1.50e-05 gcagcaacac cagcaaca cgagcaacac chr2L:21629168-21629288 38 3.48e-05 AAACGCAGCA AAGCAACA TACGAGGTAG chr3L:10767543-10767663 74 3.48e-05 AGCAGCAGAA AAGCAACA GAAACTCGTT chr2R:11582327-11582447 52 3.48e-05 GAAACACCAC AAGCAACA AACAAGTCAA chrX:2653614-2653734 59 3.48e-05 TGTTTACATT AAGCAACA ACCCAACATT chr3L:1464621-1464741 112 3.48e-05 GCAGACACAA AAGCAACA A chr3R:29771812-29771932 19 3.48e-05 TCGGATTCAA AAGCAACA AAATCCAACA chr2L:5799314-5799434 89 3.48e-05 CGCTGGGCAA AAGCAACA ACTGCAACAA chr2L:3000585-3000705 81 3.48e-05 CATCCGAGGA AAGCAACA AATAACAGGC chrX:9135064-9135184 26 3.48e-05 ACAGAGATAA AAGCAACA ACTGCAACAT chrX:2652488-2652608 13 3.48e-05 aacgagaaac aagcaaca gaaacaaaaa chr3R:24134731-24134851 95 3.48e-05 AGCTGAGCGG AAGCAACA ATAATATAGA chr3R:8806269-8806389 49 3.48e-05 TGTTAAACGC AAGCAACA TATTGTCAAT chr3R:25883947-25884067 55 3.48e-05 GACATGATTG AAGCAACA ACAACACCGA chrX:11622195-11622315 45 5.47e-05 TAACCAACGA CAACAACA GAATAGAAGT chr2L:17384624-17384744 105 5.47e-05 TAACTCAGTG CAACAACA AAATTCCA chr3L:3394426-3394546 62 5.47e-05 acaacagaaa caacaaca acatacacgc chr2L:13838777-13838897 111 5.47e-05 GCCCTAAAAA CAACAACA AC chr2R:18322179-18322299 11 5.47e-05 GTCGCAGTGA CAACAACA AAGGGGCATT chr3L:21261717-21261837 113 5.47e-05 ccacaacata caacaaca chr3L:18239643-18239763 28 5.47e-05 acaacaatct caacaaca acatacacca chr2R:14004624-14004744 66 5.47e-05 TGGCATGGAA CAACAACA GTGGCGCCCT chr3L:21961990-21962110 70 8.10e-05 TAAACAACCC AAACAACA CTGTGTTTAA chr3R:22367201-22367321 2 8.10e-05 A AAACAACA CGCTTACCGT chr3L:1794235-1794355 60 8.10e-05 AGAAACAAAC AAACAACA CTCTTTGCCA chr3R:25074653-25074773 70 8.10e-05 ATAAATAATA AAACAACA TGTTTACAGC chr2R:16209730-16209850 102 8.10e-05 ATAAGCAAAC AAACAACA AGGCGGGGAA chr2R:11198306-11198426 77 8.10e-05 AAGTCGGAAT AAACAACA ACGCAGCACA chr2R:19631093-19631213 79 8.10e-05 AACAACAAAC AAACAACA ACTCGATGCG chr3R:28326986-28327106 107 8.10e-05 AGGCAAAACA AAACAACA TGTGAT chr2R:21475066-21475186 6 8.10e-05 cacaa aaacaaca aTGAAAAGCG chr2R:18811955-18812075 56 1.01e-04 AAAGAACTGG CAGCAAAA CATTAAAGCT chr2R:6156684-6156804 107 1.01e-04 GCCACAAAAG CAGCAAAA ACAACG chr2R:10618340-10618460 97 1.01e-04 TAAAAGACAA CAGCAAAA AAATACGCAA chr2R:12274289-12274409 88 1.12e-04 aagcaagaag cagcagca gCATCCACCA chr3R:21633860-21633980 62 1.12e-04 GTTGTAGTTG CAGCAGCA CAGCAGCGTT chrX:6219839-6219959 111 1.12e-04 GTCACACCAG CAGCAGCA AT chrX:13563988-13564108 80 1.12e-04 GAAGAAGAAG CAGCAGCA GCAGGGCACA chr2R:10582877-10582997 55 1.12e-04 gcaaccgaaa cagcagca gtgggagcaa chr3R:8033234-8033354 37 1.38e-04 ATGATGAAAA AAGCAAAA CGTAAGCTCC chr3R:19164427-19164547 43 1.38e-04 AGTGCAGAAA AAGCAAAA AAAAACATAA chr2R:11453441-11453561 32 1.38e-04 GTCAACAAAT AAGCAAAA GAAAGAAGAA chrX:10739045-10739165 61 1.53e-04 ACAATGAGCG AAGCAGCA AAGCAGCGGA chr2L:9570747-9570867 24 1.53e-04 aaacacaaac aagcagca caaacagcCA chr2R:15735139-15735259 31 1.64e-04 acacaaagcc cagcaacG AATGCAAGAT chr2R:15135590-15135710 78 1.91e-04 gccacagcca caacaaaa aacacagaaa chrX:17160469-17160589 26 1.91e-04 CACACAAACA CAACAAAA CAAACAATAA chr2L:19159047-19159167 6 1.91e-04 CAATG CAACAAAA CATTTTATTC chr2R:5122204-5122324 38 1.91e-04 AAAAGCGAGC CAACAAAA CAGGGTGCTT chr2R:9444784-9444904 29 1.91e-04 TTTCAATGTG CAACAAAA GCGACAATAA chrX:6732459-6732579 68 1.91e-04 GTACAACATT CAACAAAA AACATTAAAC chr3L:8623848-8623968 39 1.91e-04 GTATAAAACA CAACAAAA CAATGGGCGT chr3R:26566946-26567066 35 2.06e-04 AAACAATCAC CAACAGCA GCCACACCCA chrX:8624957-8625077 34 2.35e-04 ATTTAACGGT AAGCAACG CGCTGCGTCG chr2L:7998838-7998958 68 2.35e-04 GCAACTAAAC AAGCAACG CGGGCTATAA chr2L:19312623-19312743 7 2.35e-04 atcaag ctgcaaca TCGTCGGCGC chr2L:21628964-21629084 46 2.35e-04 GTATTATAAG CTGCAACA TATAATAACT chr2R:7488720-7488840 101 2.70e-04 TATGTAGCCT AAACAAAA TATAAAAAAT chr2L:3862605-3862725 81 2.70e-04 CTTGAAACAC AAACAAAA ATCCCGAGTG chr3R:14748521-14748641 37 2.70e-04 ACTCCGGCGA AAACAAAA ACAAAGTACT chr2R:9865560-9865680 104 2.70e-04 TATCGCACTA AAACAAAA CAAAGCATG chr2L:21828047-21828167 36 2.70e-04 CAATGCAACG AAACAAAA GAAGCGAGAT chrX:11715440-11715560 57 3.16e-04 TGCCAGTTGC CAGCGACA GCGGCGTCGT chr3L:4614080-4614200 76 3.16e-04 AAATTTGAAC AAACAGCA GGGAGTGACA chr2L:16268428-16268548 15 3.16e-04 AAGAAGAAAT AAACAGCA GCCAGCGGCA chr2R:15750758-15750878 111 3.16e-04 ACTGCAGCAG Gagcaaca cc chr2R:17683092-17683212 80 3.16e-04 CGAGAGGGTA GAGCAACA CACGTCTGTA chr2L:2494649-2494769 84 3.65e-04 ACGGAAAACC CAGCAGAA ACAAGAACAA chr3R:26876556-26876676 52 3.65e-04 ATGTTATTAG CAGCAGAA ACAGCTGGCT chr2R:22640136-22640256 60 3.65e-04 CTGGCTTCCG ATGCAACA ATCGATAGGT chrX:6732256-6732376 69 3.65e-04 AACATTGAAC ATGCAACA TTGAATATGC chr2L:16269282-16269402 52 3.80e-04 CCAACCAACA AAGCGACA ATACACAACA chr2R:12439827-12439947 107 3.80e-04 AAAAAGAGCA AAGCGACA AACACG chr3L:629601-629721 88 4.54e-04 CACACACGCA CACCAACA CCAGCGAACG chrX:16296552-16296672 108 4.54e-04 CGATAGCAGC AAACAACG ATAGC chrX:17175869-17175989 55 4.54e-04 TTACACAGTT CACCAACA CGCCAACTGG chr3L:14131769-14131889 113 4.54e-04 ATTTCACTCT AAACAACG chr3R:14714230-14714350 8 5.04e-04 TTGCCTC CAGCAAAG CGGTAGAGTG chr3L:1546039-1546159 99 5.04e-04 TGTGTCCGAC GAACAACA AACGAATTGT chr2L:14494983-14495103 46 5.04e-04 GTCAAGCGAT CAACGACA ACGTTTTTTC chr3R:24768021-24768141 53 5.12e-04 ctGTTGACGT CAGCAGCG ACTGCGGTGT chr3R:11568772-11568892 56 5.78e-04 AAAACTTTAG ATACAACA TCTATTATCT chr3L:20296906-20297026 57 5.78e-04 CAAACATGCG ATACAACA TCGCAGATGA chr2R:11175450-11175570 59 6.37e-04 GGCGCGCGCG CTGCAAAA TGTTGGGGAT chrX:6862668-6862788 4 6.37e-04 GTG AAGCAAAg tgtgcgagtg chr3L:698976-699096 63 7.20e-04 AGAGTGTTCG AAACAGAA ACTAGCGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MARCAACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16005209-16005329 1.5e-05 71_[+2]_41 chr3R:14285199-14285319 1.5e-05 50_[+2]_62 chr2R:14000787-14000907 1.5e-05 112_[+2] chr2L:8825665-8825785 1.5e-05 69_[+2]_43 chr2R:14031672-14031792 1.5e-05 71_[+2]_41 chr2L:21237119-21237239 1.5e-05 65_[+2]_47 chr2R:7694399-7694519 1.5e-05 18_[+2]_94 chr3L:224568-224688 1.5e-05 62_[+2]_50 chr2L:12507848-12507968 1.5e-05 45_[+2]_67 chrX:14211621-14211741 1.5e-05 12_[+2]_100 chr3L:11285065-11285185 1.5e-05 39_[+2]_73 chr2R:17822305-17822425 1.5e-05 103_[+2]_9 chr3R:31213354-31213474 1.5e-05 104_[+2]_8 chr3L:3410150-3410270 1.5e-05 42_[+2]_70 chrX:6700134-6700254 1.5e-05 109_[+2]_3 chr2R:14030249-14030369 1.5e-05 67_[+2]_45 chr2L:9568372-9568492 1.5e-05 44_[+2]_68 chr3L:21240345-21240465 1.5e-05 79_[+2]_33 chr2L:9167093-9167213 1.5e-05 56_[+2]_56 chr3L:11284763-11284883 1.5e-05 88_[+2]_24 chr3L:5950662-5950782 1.5e-05 57_[+2]_55 chr2L:21629168-21629288 3.5e-05 37_[+2]_75 chr3L:10767543-10767663 3.5e-05 73_[+2]_39 chr2R:11582327-11582447 3.5e-05 51_[+2]_61 chrX:2653614-2653734 3.5e-05 58_[+2]_54 chr3L:1464621-1464741 3.5e-05 111_[+2]_1 chr3R:29771812-29771932 3.5e-05 18_[+2]_94 chr2L:5799314-5799434 3.5e-05 88_[+2]_24 chr2L:3000585-3000705 3.5e-05 80_[+2]_32 chrX:9135064-9135184 3.5e-05 25_[+2]_87 chrX:2652488-2652608 3.5e-05 12_[+2]_100 chr3R:24134731-24134851 3.5e-05 94_[+2]_18 chr3R:8806269-8806389 3.5e-05 48_[+2]_64 chr3R:25883947-25884067 3.5e-05 54_[+2]_58 chrX:11622195-11622315 5.5e-05 44_[+2]_68 chr2L:17384624-17384744 5.5e-05 104_[+2]_8 chr3L:3394426-3394546 5.5e-05 61_[+2]_51 chr2L:13838777-13838897 5.5e-05 110_[+2]_2 chr2R:18322179-18322299 5.5e-05 10_[+2]_102 chr3L:21261717-21261837 5.5e-05 112_[+2] chr3L:18239643-18239763 5.5e-05 27_[+2]_85 chr2R:14004624-14004744 5.5e-05 65_[+2]_47 chr3L:21961990-21962110 8.1e-05 69_[+2]_43 chr3R:22367201-22367321 8.1e-05 1_[+2]_111 chr3L:1794235-1794355 8.1e-05 59_[+2]_53 chr3R:25074653-25074773 8.1e-05 69_[+2]_43 chr2R:16209730-16209850 8.1e-05 101_[+2]_11 chr2R:11198306-11198426 8.1e-05 76_[+2]_36 chr2R:19631093-19631213 8.1e-05 78_[+2]_34 chr3R:28326986-28327106 8.1e-05 106_[+2]_6 chr2R:21475066-21475186 8.1e-05 5_[+2]_107 chr2R:18811955-18812075 0.0001 55_[+2]_57 chr2R:6156684-6156804 0.0001 106_[+2]_6 chr2R:10618340-10618460 0.0001 96_[+2]_16 chr2R:12274289-12274409 0.00011 87_[+2]_25 chr3R:21633860-21633980 0.00011 61_[+2]_51 chrX:6219839-6219959 0.00011 110_[+2]_2 chrX:13563988-13564108 0.00011 79_[+2]_33 chr2R:10582877-10582997 0.00011 54_[+2]_58 chr3R:8033234-8033354 0.00014 36_[+2]_76 chr3R:19164427-19164547 0.00014 42_[+2]_70 chr2R:11453441-11453561 0.00014 31_[+2]_81 chrX:10739045-10739165 0.00015 60_[+2]_52 chr2L:9570747-9570867 0.00015 23_[+2]_89 chr2R:15735139-15735259 0.00016 30_[+2]_82 chr2R:15135590-15135710 0.00019 77_[+2]_35 chrX:17160469-17160589 0.00019 25_[+2]_87 chr2L:19159047-19159167 0.00019 5_[+2]_107 chr2R:5122204-5122324 0.00019 37_[+2]_75 chr2R:9444784-9444904 0.00019 28_[+2]_84 chrX:6732459-6732579 0.00019 67_[+2]_45 chr3L:8623848-8623968 0.00019 38_[+2]_74 chr3R:26566946-26567066 0.00021 34_[+2]_78 chrX:8624957-8625077 0.00024 33_[+2]_79 chr2L:7998838-7998958 0.00024 67_[+2]_45 chr2L:19312623-19312743 0.00024 6_[+2]_106 chr2L:21628964-21629084 0.00024 45_[+2]_67 chr2R:7488720-7488840 0.00027 100_[+2]_12 chr2L:3862605-3862725 0.00027 80_[+2]_32 chr3R:14748521-14748641 0.00027 36_[+2]_76 chr2R:9865560-9865680 0.00027 103_[+2]_9 chr2L:21828047-21828167 0.00027 35_[+2]_77 chrX:11715440-11715560 0.00032 56_[+2]_56 chr3L:4614080-4614200 0.00032 75_[+2]_37 chr2L:16268428-16268548 0.00032 14_[+2]_98 chr2R:15750758-15750878 0.00032 110_[+2]_2 chr2R:17683092-17683212 0.00032 79_[+2]_33 chr2L:2494649-2494769 0.00037 83_[+2]_29 chr3R:26876556-26876676 0.00037 51_[+2]_61 chr2R:22640136-22640256 0.00037 59_[+2]_53 chrX:6732256-6732376 0.00037 68_[+2]_44 chr2L:16269282-16269402 0.00038 51_[+2]_61 chr2R:12439827-12439947 0.00038 106_[+2]_6 chr3L:629601-629721 0.00045 87_[+2]_25 chrX:16296552-16296672 0.00045 107_[+2]_5 chrX:17175869-17175989 0.00045 54_[+2]_58 chr3L:14131769-14131889 0.00045 112_[+2] chr3R:14714230-14714350 0.0005 7_[+2]_105 chr3L:1546039-1546159 0.0005 98_[+2]_14 chr2L:14494983-14495103 0.0005 45_[+2]_67 chr3R:24768021-24768141 0.00051 52_[+2]_60 chr3R:11568772-11568892 0.00058 55_[+2]_57 chr3L:20296906-20297026 0.00058 56_[+2]_56 chr2R:11175450-11175570 0.00064 58_[+2]_54 chrX:6862668-6862788 0.00064 3_[+2]_109 chr3L:698976-699096 0.00072 62_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MARCAACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MARCAACA width=8 seqs=106 chr3R:16005209-16005329 ( 72) CAGCAACA 1 chr3R:14285199-14285319 ( 51) CAGCAACA 1 chr2R:14000787-14000907 ( 113) CAGCAACA 1 chr2L:8825665-8825785 ( 70) CAGCAACA 1 chr2R:14031672-14031792 ( 72) CAGCAACA 1 chr2L:21237119-21237239 ( 66) CAGCAACA 1 chr2R:7694399-7694519 ( 19) CAGCAACA 1 chr3L:224568-224688 ( 63) CAGCAACA 1 chr2L:12507848-12507968 ( 46) CAGCAACA 1 chrX:14211621-14211741 ( 13) CAGCAACA 1 chr3L:11285065-11285185 ( 40) CAGCAACA 1 chr2R:17822305-17822425 ( 104) CAGCAACA 1 chr3R:31213354-31213474 ( 105) CAGCAACA 1 chr3L:3410150-3410270 ( 43) CAGCAACA 1 chrX:6700134-6700254 ( 110) CAGCAACA 1 chr2R:14030249-14030369 ( 68) CAGCAACA 1 chr2L:9568372-9568492 ( 45) CAGCAACA 1 chr3L:21240345-21240465 ( 80) CAGCAACA 1 chr2L:9167093-9167213 ( 57) CAGCAACA 1 chr3L:11284763-11284883 ( 89) CAGCAACA 1 chr3L:5950662-5950782 ( 58) CAGCAACA 1 chr2L:21629168-21629288 ( 38) AAGCAACA 1 chr3L:10767543-10767663 ( 74) AAGCAACA 1 chr2R:11582327-11582447 ( 52) AAGCAACA 1 chrX:2653614-2653734 ( 59) AAGCAACA 1 chr3L:1464621-1464741 ( 112) AAGCAACA 1 chr3R:29771812-29771932 ( 19) AAGCAACA 1 chr2L:5799314-5799434 ( 89) AAGCAACA 1 chr2L:3000585-3000705 ( 81) AAGCAACA 1 chrX:9135064-9135184 ( 26) AAGCAACA 1 chrX:2652488-2652608 ( 13) AAGCAACA 1 chr3R:24134731-24134851 ( 95) AAGCAACA 1 chr3R:8806269-8806389 ( 49) AAGCAACA 1 chr3R:25883947-25884067 ( 55) AAGCAACA 1 chrX:11622195-11622315 ( 45) CAACAACA 1 chr2L:17384624-17384744 ( 105) CAACAACA 1 chr3L:3394426-3394546 ( 62) CAACAACA 1 chr2L:13838777-13838897 ( 111) CAACAACA 1 chr2R:18322179-18322299 ( 11) CAACAACA 1 chr3L:21261717-21261837 ( 113) CAACAACA 1 chr3L:18239643-18239763 ( 28) CAACAACA 1 chr2R:14004624-14004744 ( 66) CAACAACA 1 chr3L:21961990-21962110 ( 70) AAACAACA 1 chr3R:22367201-22367321 ( 2) AAACAACA 1 chr3L:1794235-1794355 ( 60) AAACAACA 1 chr3R:25074653-25074773 ( 70) AAACAACA 1 chr2R:16209730-16209850 ( 102) AAACAACA 1 chr2R:11198306-11198426 ( 77) AAACAACA 1 chr2R:19631093-19631213 ( 79) AAACAACA 1 chr3R:28326986-28327106 ( 107) AAACAACA 1 chr2R:21475066-21475186 ( 6) AAACAACA 1 chr2R:18811955-18812075 ( 56) CAGCAAAA 1 chr2R:6156684-6156804 ( 107) CAGCAAAA 1 chr2R:10618340-10618460 ( 97) CAGCAAAA 1 chr2R:12274289-12274409 ( 88) CAGCAGCA 1 chr3R:21633860-21633980 ( 62) CAGCAGCA 1 chrX:6219839-6219959 ( 111) CAGCAGCA 1 chrX:13563988-13564108 ( 80) CAGCAGCA 1 chr2R:10582877-10582997 ( 55) CAGCAGCA 1 chr3R:8033234-8033354 ( 37) AAGCAAAA 1 chr3R:19164427-19164547 ( 43) AAGCAAAA 1 chr2R:11453441-11453561 ( 32) AAGCAAAA 1 chrX:10739045-10739165 ( 61) AAGCAGCA 1 chr2L:9570747-9570867 ( 24) AAGCAGCA 1 chr2R:15735139-15735259 ( 31) CAGCAACG 1 chr2R:15135590-15135710 ( 78) CAACAAAA 1 chrX:17160469-17160589 ( 26) CAACAAAA 1 chr2L:19159047-19159167 ( 6) CAACAAAA 1 chr2R:5122204-5122324 ( 38) CAACAAAA 1 chr2R:9444784-9444904 ( 29) CAACAAAA 1 chrX:6732459-6732579 ( 68) CAACAAAA 1 chr3L:8623848-8623968 ( 39) CAACAAAA 1 chr3R:26566946-26567066 ( 35) CAACAGCA 1 chrX:8624957-8625077 ( 34) AAGCAACG 1 chr2L:7998838-7998958 ( 68) AAGCAACG 1 chr2L:19312623-19312743 ( 7) CTGCAACA 1 chr2L:21628964-21629084 ( 46) CTGCAACA 1 chr2R:7488720-7488840 ( 101) AAACAAAA 1 chr2L:3862605-3862725 ( 81) AAACAAAA 1 chr3R:14748521-14748641 ( 37) AAACAAAA 1 chr2R:9865560-9865680 ( 104) AAACAAAA 1 chr2L:21828047-21828167 ( 36) AAACAAAA 1 chrX:11715440-11715560 ( 57) CAGCGACA 1 chr3L:4614080-4614200 ( 76) AAACAGCA 1 chr2L:16268428-16268548 ( 15) AAACAGCA 1 chr2R:15750758-15750878 ( 111) GAGCAACA 1 chr2R:17683092-17683212 ( 80) GAGCAACA 1 chr2L:2494649-2494769 ( 84) CAGCAGAA 1 chr3R:26876556-26876676 ( 52) CAGCAGAA 1 chr2R:22640136-22640256 ( 60) ATGCAACA 1 chrX:6732256-6732376 ( 69) ATGCAACA 1 chr2L:16269282-16269402 ( 52) AAGCGACA 1 chr2R:12439827-12439947 ( 107) AAGCGACA 1 chr3L:629601-629721 ( 88) CACCAACA 1 chrX:16296552-16296672 ( 108) AAACAACG 1 chrX:17175869-17175989 ( 55) CACCAACA 1 chr3L:14131769-14131889 ( 113) AAACAACG 1 chr3R:14714230-14714350 ( 8) CAGCAAAG 1 chr3L:1546039-1546159 ( 99) GAACAACA 1 chr2L:14494983-14495103 ( 46) CAACGACA 1 chr3R:24768021-24768141 ( 53) CAGCAGCG 1 chr3R:11568772-11568892 ( 56) ATACAACA 1 chr3L:20296906-20297026 ( 57) ATACAACA 1 chr2R:11175450-11175570 ( 59) CTGCAAAA 1 chrX:6862668-6862788 ( 4) AAGCAAAG 1 chr3L:698976-699096 ( 63) AAACAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MARCAACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.23513 E= 3.9e-045 60 131 -293 -1337 170 -1337 -1337 -209 36 -352 151 -1337 -1337 221 -1337 -1337 175 -1337 -252 -1337 160 -1337 -71 -1337 -34 184 -1337 -1337 169 -1337 -152 -1337 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MARCAACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 3.9e-045 0.433962 0.537736 0.028302 0.000000 0.933962 0.000000 0.000000 0.066038 0.367925 0.018868 0.613208 0.000000 0.000000 1.000000 0.000000 0.000000 0.962264 0.000000 0.037736 0.000000 0.867925 0.000000 0.132075 0.000000 0.226415 0.773585 0.000000 0.000000 0.924528 0.000000 0.075472 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MARCAACA MEME-2 regular expression -------------------------------------------------------------------------------- [CA]A[GA]CAA[CA]A -------------------------------------------------------------------------------- Time 13.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTTKGTT MEME-3 width = 8 sites = 69 llr = 534 E-value = 1.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTTKGTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::12: probability G :5::47:1 matrix T a5aa6289 bits 2.2 2.0 1.8 * ** 1.5 * ** * Relative 1.3 * ** ** Entropy 1.1 ***** ** (11.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTTGTT consensus T GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKGTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11622195-11622315 10 2.30e-05 gtgcgcctg tgTTTGTT TTTTGTTATT chr3R:13016406-13016526 30 2.30e-05 AAAGACGATT TGTTTGTT TTCATAACCA chr2R:18775380-18775500 33 2.30e-05 CTTTCAATGT TGTTTGTT TTGCTCGACT chr2L:7043206-7043326 24 2.30e-05 TGTTTGCCGA TGTTTGTT TGCATTAGGT chrX:10212099-10212219 71 2.30e-05 gtgttttgtt tgtttgtt tgtttgcttg chrX:1380438-1380558 28 2.30e-05 ATGCGTTTAA TGTTTGTT TATAAACTCT chr3R:26876556-26876676 90 2.30e-05 GCTGCATTAT TGTTTGTT AGTTTTGCTG chr3R:21660698-21660818 43 2.30e-05 CTTCATACTT TGTTTGTT CTTTCGCACG chrX:17658464-17658584 55 2.30e-05 tttgcttatg tgtttgtt tgtGCTTCAC chr2L:19159047-19159167 90 2.30e-05 TGTGTATGTG TGTTTGTT CTTTTCGACG chr3L:21261717-21261837 65 2.30e-05 GTGTTGTGAT TGTTTGTT TGGAAACCGC chr2L:18944844-18944964 63 2.30e-05 cgtgcttgtt tgtttgtt cgtttgttGC chr3L:10363485-10363605 61 2.30e-05 ttgttgttgc tgtttgtt gGCTGCCGTT chr3R:11437696-11437816 83 2.30e-05 gtttttcgtt tgtttgtt tgtttattat chrX:16296552-16296672 6 4.06e-05 GCCAG TGTTGGTT AGTCTCGAAT chr2R:17683092-17683212 11 4.06e-05 TTATACAtgt tgttggtt ttgttgtttc chr3R:21865172-21865292 51 7.05e-05 TTGTGATTAA TTTTTGTT GATTAAATTT chr3R:16005209-16005329 112 7.05e-05 GGCAAAACAG TTTTTGTT T chr3R:9430506-9430626 84 7.05e-05 TACACTTCAA TTTTTGTT CTTGTTCCTG chr2R:9284005-9284125 17 7.05e-05 ACGCGTCGCG TTTTTGTT TACTTTCCTT chr2L:12007070-12007190 112 7.05e-05 ctgtttttgt tttttgtt g chr2R:5122204-5122324 104 7.05e-05 CACGGCACAA TTTTTGTT AAATACTGA chr2L:16268428-16268548 79 7.05e-05 CTAGCTGGGT TTTTTGTT ATTGCACACA chrX:9142379-9142499 29 7.05e-05 ATTGGTTTTT TTTTTGTT TCACTTTTAA chr3R:8033234-8033354 110 9.35e-05 GTTGCAACTA TTTTGGTT TGA chr3R:20328283-20328403 69 9.35e-05 AATTATAATA TTTTGGTT TGCTCGCACA chr3L:14625081-14625201 103 9.35e-05 TGTTTATTTT TTTTGGTT CAAAGGGGTG chr3R:24768021-24768141 97 9.35e-05 CACCGTGACT TTTTGGTT CTTGGAGAAA chr3R:29771812-29771932 63 9.35e-05 AGTGTTTGCT TTTTGGTT GGGGAGGGAG chr3L:20296906-20297026 25 9.35e-05 GTTGATATAG TTTTGGTT TACAACACAA chr3R:27559053-27559173 31 1.23e-04 CGTTTATCTC TGTTTTTT AACGAACGCG chr2L:7158988-7159108 45 1.41e-04 GTGTACATTG TGTTTGCT TTGGGGTGAG chr3R:11759501-11759621 59 1.41e-04 ttacctaaca tgtttgct gccttttgcc chr3L:8912394-8912514 43 1.41e-04 TGATGTTGGA TGTTTGCT GGGGAGCCGA chr2R:14419866-14419986 97 1.41e-04 agtgcagctg tgtttgct gctattgttg chr3L:3450736-3450856 6 1.64e-04 GCTCT TGTTGTTT TCTTGATGGG chr3R:21017623-21017743 99 1.64e-04 TTGTTGCATA TGTTGTTT ACGGCAATTG chr3L:12773491-12773611 49 1.64e-04 TATAAACAAA TGTTGTTT TCCTTTATCG chr3R:24130205-24130325 41 1.64e-04 AAACAGCTGA TGTTGTTT TGATTGCGGC chr4:56231-56351 50 2.01e-04 CTTATTCCTA TGTTTCTT ACGAGTGGAC chrX:17175869-17175989 83 2.01e-04 TTTCGGCGGA TGTTTCTT GAATGTAGTT chrX:7947048-7947168 82 2.01e-04 AGACGGGCTC TGTTTCTT TGTTTTGCAC chr3R:14819951-14820071 80 2.01e-04 CTACTAAACT TGTTGGCT TTGGCTTGAA chr3L:690461-690581 42 2.01e-04 AACTCTGCGA TGTTGGCT GTTTTTGCAC chr2R:10478152-10478272 106 2.40e-04 AGTTTTTAGC TTTTTTTT CGGGCCG chr3R:16704372-16704492 113 2.40e-04 AAAAACGTAA TTTTTTTT chr3R:24105637-24105757 52 2.40e-04 GGCCAAGAGT TTTTTTTT GTGTGATTTC chr2L:9576774-9576894 89 2.40e-04 TAGTGTCGTT TTTTTTTT AACTAGGTGG chr2R:15135590-15135710 1 2.80e-04 . TTTTTGCT GCCGTCTGTT chr2L:14024291-14024411 62 2.80e-04 TCGCATGAAC TTTTTGCT TTGGCTCGGC chr3L:616727-616847 55 2.80e-04 CTGCCGTTGG TTTTTGCT TTGCGACGAT chr2R:7890069-7890189 28 2.80e-04 cattgtcggt tgttgctt gctgcgcgta chr2L:3575899-3576019 83 2.80e-04 TTACGTGTAA TGTTGCTT TGGCGTTGTC chr2R:19357481-19357601 48 3.10e-04 CACACAATTA TTTTGTTT ACCACACACA chr2R:11582327-11582447 22 3.10e-04 ATTTGTTGTA TTTTGTTT AAAGAACACC chr2R:14503561-14503681 1 3.10e-04 . TTTTGTTT TAGCGGTTTT chr2L:21628964-21629084 22 3.10e-04 TAGGCATGAG TTTTGTTT TGTTATGTAT chr2L:3159480-3159600 52 3.10e-04 TATTTTGACA TTTTGTTT GGTTTTTCGA chr2L:16321356-16321476 101 3.58e-04 GCGCTGCTGC TTTTGGCT AGCCAAAGAA chr3R:21629634-21629754 108 3.58e-04 AAATAACAAG TTTTTCTT TATTT chr2R:20308632-20308752 95 3.58e-04 TCAGTATGCA TTTTTCTT TATTTTGTCC chr3R:25074653-25074773 33 3.99e-04 ATTTTATATA TTTTGCTT ATTCATTACA chr3L:1546039-1546159 85 3.99e-04 TTCGAAGTTG TGTTTGTG TCCGACGAAC chr3R:5060680-5060800 93 3.99e-04 tgtgtatttg tgtttgtg tgtgtATTCC chr2R:24540560-24540680 15 3.99e-04 TTATCGCCAG TTTTGCTT TGCTCTTTCA chr3L:629601-629721 4 4.12e-04 tgt tgttggtg tgttgttgta chr3L:11295277-11295397 14 4.12e-04 TTGGTATAAA TGTTGGTG TAATTATTAT chr2L:1427973-1428093 67 4.35e-04 TCAAATTTAA TTTTTGTG GAATTAGAGG chr3L:3410150-3410270 108 4.58e-04 ATCCAACAGA TGTTTTCT ATGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKGTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11622195-11622315 2.3e-05 9_[+3]_103 chr3R:13016406-13016526 2.3e-05 29_[+3]_83 chr2R:18775380-18775500 2.3e-05 32_[+3]_80 chr2L:7043206-7043326 2.3e-05 23_[+3]_89 chrX:10212099-10212219 2.3e-05 70_[+3]_42 chrX:1380438-1380558 2.3e-05 27_[+3]_85 chr3R:26876556-26876676 2.3e-05 89_[+3]_23 chr3R:21660698-21660818 2.3e-05 42_[+3]_70 chrX:17658464-17658584 2.3e-05 54_[+3]_58 chr2L:19159047-19159167 2.3e-05 89_[+3]_23 chr3L:21261717-21261837 2.3e-05 64_[+3]_48 chr2L:18944844-18944964 2.3e-05 62_[+3]_50 chr3L:10363485-10363605 2.3e-05 60_[+3]_52 chr3R:11437696-11437816 2.3e-05 82_[+3]_30 chrX:16296552-16296672 4.1e-05 5_[+3]_107 chr2R:17683092-17683212 4.1e-05 10_[+3]_102 chr3R:21865172-21865292 7.1e-05 50_[+3]_62 chr3R:16005209-16005329 7.1e-05 111_[+3]_1 chr3R:9430506-9430626 7.1e-05 83_[+3]_29 chr2R:9284005-9284125 7.1e-05 16_[+3]_96 chr2L:12007070-12007190 7.1e-05 111_[+3]_1 chr2R:5122204-5122324 7.1e-05 103_[+3]_9 chr2L:16268428-16268548 7.1e-05 78_[+3]_34 chrX:9142379-9142499 7.1e-05 28_[+3]_84 chr3R:8033234-8033354 9.3e-05 109_[+3]_3 chr3R:20328283-20328403 9.3e-05 68_[+3]_44 chr3L:14625081-14625201 9.3e-05 102_[+3]_10 chr3R:24768021-24768141 9.3e-05 96_[+3]_16 chr3R:29771812-29771932 9.3e-05 62_[+3]_50 chr3L:20296906-20297026 9.3e-05 24_[+3]_88 chr3R:27559053-27559173 0.00012 30_[+3]_82 chr2L:7158988-7159108 0.00014 44_[+3]_68 chr3R:11759501-11759621 0.00014 58_[+3]_54 chr3L:8912394-8912514 0.00014 42_[+3]_70 chr2R:14419866-14419986 0.00014 96_[+3]_16 chr3L:3450736-3450856 0.00016 5_[+3]_107 chr3R:21017623-21017743 0.00016 98_[+3]_14 chr3L:12773491-12773611 0.00016 48_[+3]_64 chr3R:24130205-24130325 0.00016 40_[+3]_72 chr4:56231-56351 0.0002 49_[+3]_63 chrX:17175869-17175989 0.0002 82_[+3]_30 chrX:7947048-7947168 0.0002 81_[+3]_31 chr3R:14819951-14820071 0.0002 79_[+3]_33 chr3L:690461-690581 0.0002 41_[+3]_71 chr2R:10478152-10478272 0.00024 105_[+3]_7 chr3R:16704372-16704492 0.00024 112_[+3] chr3R:24105637-24105757 0.00024 51_[+3]_61 chr2L:9576774-9576894 0.00024 88_[+3]_24 chr2R:15135590-15135710 0.00028 [+3]_112 chr2L:14024291-14024411 0.00028 61_[+3]_51 chr3L:616727-616847 0.00028 54_[+3]_58 chr2R:7890069-7890189 0.00028 27_[+3]_85 chr2L:3575899-3576019 0.00028 82_[+3]_30 chr2R:19357481-19357601 0.00031 47_[+3]_65 chr2R:11582327-11582447 0.00031 21_[+3]_91 chr2R:14503561-14503681 0.00031 [+3]_112 chr2L:21628964-21629084 0.00031 21_[+3]_91 chr2L:3159480-3159600 0.00031 51_[+3]_61 chr2L:16321356-16321476 0.00036 100_[+3]_12 chr3R:21629634-21629754 0.00036 107_[+3]_5 chr2R:20308632-20308752 0.00036 94_[+3]_18 chr3R:25074653-25074773 0.0004 32_[+3]_80 chr3L:1546039-1546159 0.0004 84_[+3]_28 chr3R:5060680-5060800 0.0004 92_[+3]_20 chr2R:24540560-24540680 0.0004 14_[+3]_98 chr3L:629601-629721 0.00041 3_[+3]_109 chr3L:11295277-11295397 0.00041 13_[+3]_99 chr2L:1427973-1428093 0.00044 66_[+3]_46 chr3L:3410150-3410270 0.00046 107_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKGTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTTKGTT width=8 seqs=69 chrX:11622195-11622315 ( 10) TGTTTGTT 1 chr3R:13016406-13016526 ( 30) TGTTTGTT 1 chr2R:18775380-18775500 ( 33) TGTTTGTT 1 chr2L:7043206-7043326 ( 24) TGTTTGTT 1 chrX:10212099-10212219 ( 71) TGTTTGTT 1 chrX:1380438-1380558 ( 28) TGTTTGTT 1 chr3R:26876556-26876676 ( 90) TGTTTGTT 1 chr3R:21660698-21660818 ( 43) TGTTTGTT 1 chrX:17658464-17658584 ( 55) TGTTTGTT 1 chr2L:19159047-19159167 ( 90) TGTTTGTT 1 chr3L:21261717-21261837 ( 65) TGTTTGTT 1 chr2L:18944844-18944964 ( 63) TGTTTGTT 1 chr3L:10363485-10363605 ( 61) TGTTTGTT 1 chr3R:11437696-11437816 ( 83) TGTTTGTT 1 chrX:16296552-16296672 ( 6) TGTTGGTT 1 chr2R:17683092-17683212 ( 11) TGTTGGTT 1 chr3R:21865172-21865292 ( 51) TTTTTGTT 1 chr3R:16005209-16005329 ( 112) TTTTTGTT 1 chr3R:9430506-9430626 ( 84) TTTTTGTT 1 chr2R:9284005-9284125 ( 17) TTTTTGTT 1 chr2L:12007070-12007190 ( 112) TTTTTGTT 1 chr2R:5122204-5122324 ( 104) TTTTTGTT 1 chr2L:16268428-16268548 ( 79) TTTTTGTT 1 chrX:9142379-9142499 ( 29) TTTTTGTT 1 chr3R:8033234-8033354 ( 110) TTTTGGTT 1 chr3R:20328283-20328403 ( 69) TTTTGGTT 1 chr3L:14625081-14625201 ( 103) TTTTGGTT 1 chr3R:24768021-24768141 ( 97) TTTTGGTT 1 chr3R:29771812-29771932 ( 63) TTTTGGTT 1 chr3L:20296906-20297026 ( 25) TTTTGGTT 1 chr3R:27559053-27559173 ( 31) TGTTTTTT 1 chr2L:7158988-7159108 ( 45) TGTTTGCT 1 chr3R:11759501-11759621 ( 59) TGTTTGCT 1 chr3L:8912394-8912514 ( 43) TGTTTGCT 1 chr2R:14419866-14419986 ( 97) TGTTTGCT 1 chr3L:3450736-3450856 ( 6) TGTTGTTT 1 chr3R:21017623-21017743 ( 99) TGTTGTTT 1 chr3L:12773491-12773611 ( 49) TGTTGTTT 1 chr3R:24130205-24130325 ( 41) TGTTGTTT 1 chr4:56231-56351 ( 50) TGTTTCTT 1 chrX:17175869-17175989 ( 83) TGTTTCTT 1 chrX:7947048-7947168 ( 82) TGTTTCTT 1 chr3R:14819951-14820071 ( 80) TGTTGGCT 1 chr3L:690461-690581 ( 42) TGTTGGCT 1 chr2R:10478152-10478272 ( 106) TTTTTTTT 1 chr3R:16704372-16704492 ( 113) TTTTTTTT 1 chr3R:24105637-24105757 ( 52) TTTTTTTT 1 chr2L:9576774-9576894 ( 89) TTTTTTTT 1 chr2R:15135590-15135710 ( 1) TTTTTGCT 1 chr2L:14024291-14024411 ( 62) TTTTTGCT 1 chr3L:616727-616847 ( 55) TTTTTGCT 1 chr2R:7890069-7890189 ( 28) TGTTGCTT 1 chr2L:3575899-3576019 ( 83) TGTTGCTT 1 chr2R:19357481-19357601 ( 48) TTTTGTTT 1 chr2R:11582327-11582447 ( 22) TTTTGTTT 1 chr2R:14503561-14503681 ( 1) TTTTGTTT 1 chr2L:21628964-21629084 ( 22) TTTTGTTT 1 chr2L:3159480-3159600 ( 52) TTTTGTTT 1 chr2L:16321356-16321476 ( 101) TTTTGGCT 1 chr3R:21629634-21629754 ( 108) TTTTTCTT 1 chr2R:20308632-20308752 ( 95) TTTTTCTT 1 chr3R:25074653-25074773 ( 33) TTTTGCTT 1 chr3L:1546039-1546159 ( 85) TGTTTGTG 1 chr3R:5060680-5060800 ( 93) TGTTTGTG 1 chr2R:24540560-24540680 ( 15) TTTTGCTT 1 chr3L:629601-629721 ( 4) TGTTGGTG 1 chr3L:11295277-11295397 ( 14) TGTTGGTG 1 chr2L:1427973-1428093 ( 67) TTTTTGTG 1 chr3L:3410150-3410270 ( 108) TGTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKGTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0512 E= 1.3e-008 -1275 -1275 -1275 183 -1275 -1275 131 72 -1275 -1275 -1275 183 -1275 -1275 -1275 183 -1275 -1275 80 115 -1275 -73 159 -37 -1275 -44 -1275 158 -1275 -1275 -157 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKGTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 1.3e-008 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.536232 0.463768 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.376812 0.623188 0.000000 0.130435 0.652174 0.217391 0.000000 0.159420 0.000000 0.840580 0.000000 0.000000 0.072464 0.927536 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKGTT MEME-3 regular expression -------------------------------------------------------------------------------- T[GT]TT[TG][GT]TT -------------------------------------------------------------------------------- Time 19.64 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCRGCR MEME-4 width = 8 sites = 33 llr = 294 E-value = 6.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCRGCR MEME-4 Description -------------------------------------------------------------------------------- Simplified A :71:5::6 pos.-specific C a2:a::a1 probability G :29:5a:3 matrix T :::::::: bits 2.2 * * ** 2.0 * * ** 1.8 * * ** 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 * ** ** (12.9 bits) 0.9 * ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAGCA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRGCR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14000787-14000907 87 8.48e-06 acaacttagg cagcggca gcgcaggaac chr2L:16268428-16268548 25 8.48e-06 AAACAGCAGC CAGCGGCA ACGGCGAGAA chr2R:9444784-9444904 57 8.48e-06 AATAACAAGC CAGCGGCA ATATACAGCC chr2L:8825665-8825785 54 1.98e-05 agcacgccat cagcagca acatcacgca chr2R:14031672-14031792 45 1.98e-05 gcatcagcag cagcagca gcagcTGAGg chr2L:12507848-12507968 9 1.98e-05 agaagcag cagcagca gtaataacaa chr3L:11285065-11285185 96 1.98e-05 ATGGCCCATA CAGCAGCA ACAATAGTTG chr3L:21261717-21261837 27 1.98e-05 ATAGTAAGAG CAGCAGCA ACGAGGGGCT chr2R:14030249-14030369 42 1.98e-05 gcagcagcag cagcagca gcaacatcaa chr2R:14004624-14004744 95 1.98e-05 TGCAATGTTG CAGCAGCA TGGACGATAA chr3L:5950662-5950782 81 1.98e-05 aacacagcaa cagcagca acagcGACGC chr2L:16476575-16476695 49 2.61e-05 AGCCAAAAGA CAGCGGCG ATGGGCAAAT chr3R:21017623-21017743 58 2.61e-05 TGTTGGATAG CAGCGGCG ACTTCGATTA chr3R:24130205-24130325 79 2.61e-05 GGACATTCGC CAGCGGCG TTGCCAGACA chrX:16296552-16296672 83 3.46e-05 CCATCGCTAA CAGCAGCG ATAACAGCGA chr3R:21633860-21633980 70 3.46e-05 TGCAGCAGCA CAGCAGCG TTGCCGATTT chr2R:15735139-15735259 74 3.46e-05 AAAACCCAGG CAGCAGCG CAGCGAATTG chrX:8624957-8625077 70 4.74e-05 TGAACGCCCT CCGCGGCA GAACGAGATG chr2R:12168912-12169032 48 4.74e-05 GCGAGGTGTA CCGCGGCA AACTCATCGA chr3R:21835647-21835767 100 4.74e-05 GCAAACACGG CGGCGGCA AACACTTTGA chr2R:11604880-11605000 92 4.74e-05 CATTCAACAT CGGCGGCA GCGACTGTGA chr3L:3410150-3410270 20 6.44e-05 agcaaacaca cggcagca acactattgc chrX:6700134-6700254 101 6.44e-05 caacagtaag ccgcagca gcagcaacaa chr3R:16847487-16847607 43 7.41e-05 GACAGTCGGG CGGCGGCG GTCCGCTCGC chr2R:17766957-17767077 30 9.33e-05 TTATACACGT CAGCGGCC GAGACAACTA chr3R:21660698-21660818 82 9.33e-05 GGCTCGTCGA CCGCAGCG TTGCTTTTTT chr2L:19312623-19312743 69 9.33e-05 TTTACGCAGT CCGCAGCG GGAGAAGGGG chr3R:6426327-6426447 44 1.02e-04 AAACTTCAGG CAGCAGCC AGCCACCGAA chr3R:25883947-25884067 6 1.13e-04 GCGAG CAACGGCA CTTGGCAACA chr3L:21240345-21240465 61 1.28e-04 TCCCAAGTTA CAACAGCA ACATCAAGCA chr2R:21000232-21000352 71 1.37e-04 ACAGGCATAC CAACGGCG AACATACATA chr3R:14285199-14285319 42 1.48e-04 TTAAAAGTTT CAACAGCG CCAGCAACAA chr3R:24105637-24105757 38 1.57e-04 GCGATTTTCC CGGCGGCC AAGAGTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRGCR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14000787-14000907 8.5e-06 86_[+4]_26 chr2L:16268428-16268548 8.5e-06 24_[+4]_88 chr2R:9444784-9444904 8.5e-06 56_[+4]_56 chr2L:8825665-8825785 2e-05 53_[+4]_59 chr2R:14031672-14031792 2e-05 44_[+4]_68 chr2L:12507848-12507968 2e-05 8_[+4]_104 chr3L:11285065-11285185 2e-05 95_[+4]_17 chr3L:21261717-21261837 2e-05 26_[+4]_86 chr2R:14030249-14030369 2e-05 41_[+4]_71 chr2R:14004624-14004744 2e-05 94_[+4]_18 chr3L:5950662-5950782 2e-05 80_[+4]_32 chr2L:16476575-16476695 2.6e-05 48_[+4]_64 chr3R:21017623-21017743 2.6e-05 57_[+4]_55 chr3R:24130205-24130325 2.6e-05 78_[+4]_34 chrX:16296552-16296672 3.5e-05 82_[+4]_30 chr3R:21633860-21633980 3.5e-05 69_[+4]_43 chr2R:15735139-15735259 3.5e-05 73_[+4]_39 chrX:8624957-8625077 4.7e-05 69_[+4]_43 chr2R:12168912-12169032 4.7e-05 47_[+4]_65 chr3R:21835647-21835767 4.7e-05 99_[+4]_13 chr2R:11604880-11605000 4.7e-05 91_[+4]_21 chr3L:3410150-3410270 6.4e-05 19_[+4]_93 chrX:6700134-6700254 6.4e-05 100_[+4]_12 chr3R:16847487-16847607 7.4e-05 42_[+4]_70 chr2R:17766957-17767077 9.3e-05 29_[+4]_83 chr3R:21660698-21660818 9.3e-05 81_[+4]_31 chr2L:19312623-19312743 9.3e-05 68_[+4]_44 chr3R:6426327-6426447 0.0001 43_[+4]_69 chr3R:25883947-25884067 0.00011 5_[+4]_107 chr3L:21240345-21240465 0.00013 60_[+4]_52 chr2R:21000232-21000352 0.00014 70_[+4]_42 chr3R:14285199-14285319 0.00015 41_[+4]_71 chr3R:24105637-24105757 0.00016 37_[+4]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRGCR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCRGCR width=8 seqs=33 chr2R:14000787-14000907 ( 87) CAGCGGCA 1 chr2L:16268428-16268548 ( 25) CAGCGGCA 1 chr2R:9444784-9444904 ( 57) CAGCGGCA 1 chr2L:8825665-8825785 ( 54) CAGCAGCA 1 chr2R:14031672-14031792 ( 45) CAGCAGCA 1 chr2L:12507848-12507968 ( 9) CAGCAGCA 1 chr3L:11285065-11285185 ( 96) CAGCAGCA 1 chr3L:21261717-21261837 ( 27) CAGCAGCA 1 chr2R:14030249-14030369 ( 42) CAGCAGCA 1 chr2R:14004624-14004744 ( 95) CAGCAGCA 1 chr3L:5950662-5950782 ( 81) CAGCAGCA 1 chr2L:16476575-16476695 ( 49) CAGCGGCG 1 chr3R:21017623-21017743 ( 58) CAGCGGCG 1 chr3R:24130205-24130325 ( 79) CAGCGGCG 1 chrX:16296552-16296672 ( 83) CAGCAGCG 1 chr3R:21633860-21633980 ( 70) CAGCAGCG 1 chr2R:15735139-15735259 ( 74) CAGCAGCG 1 chrX:8624957-8625077 ( 70) CCGCGGCA 1 chr2R:12168912-12169032 ( 48) CCGCGGCA 1 chr3R:21835647-21835767 ( 100) CGGCGGCA 1 chr2R:11604880-11605000 ( 92) CGGCGGCA 1 chr3L:3410150-3410270 ( 20) CGGCAGCA 1 chrX:6700134-6700254 ( 101) CCGCAGCA 1 chr3R:16847487-16847607 ( 43) CGGCGGCG 1 chr2R:17766957-17767077 ( 30) CAGCGGCC 1 chr3R:21660698-21660818 ( 82) CCGCAGCG 1 chr2L:19312623-19312743 ( 69) CCGCAGCG 1 chr3R:6426327-6426447 ( 44) CAGCAGCC 1 chr3R:25883947-25884067 ( 6) CAACGGCA 1 chr3L:21240345-21240465 ( 61) CAACAGCA 1 chr2R:21000232-21000352 ( 71) CAACGGCG 1 chr3R:14285199-14285319 ( 42) CAACAGCG 1 chr3R:24105637-24105757 ( 38) CGGCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRGCR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 6.5e-002 -1169 221 -1169 -1169 128 -52 -51 -1169 -124 -1169 202 -1169 -1169 221 -1169 -1169 93 -1169 107 -1169 -1169 -1169 221 -1169 -1169 221 -1169 -1169 101 -125 63 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRGCR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 6.5e-002 0.000000 1.000000 0.000000 0.000000 0.696970 0.151515 0.151515 0.000000 0.121212 0.000000 0.878788 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.000000 0.454545 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.575758 0.090909 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRGCR MEME-4 regular expression -------------------------------------------------------------------------------- CAGC[AG]GC[AG] -------------------------------------------------------------------------------- Time 25.46 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGCTSBC MEME-5 width = 8 sites = 24 llr = 221 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGCTSBC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2a:a:72a probability G 1:a::34: matrix T 7:::a:4: bits 2.2 *** * 2.0 *** * 1.8 **** * 1.5 **** * Relative 1.3 ***** * Entropy 1.1 ***** * (13.3 bits) 0.9 ****** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGCTCGC consensus GT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCTSBC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7488720-7488840 17 8.17e-06 AACACTCGAG TCGCTCGc tctctctctc chrX:8624957-8625077 1 8.17e-06 . TCGCTCGC ACTGCAATGG chr2R:11603434-11603554 64 8.17e-06 cctctccctt tcgctcgc actggcccac chr2R:10558888-10559008 112 8.17e-06 GCCGTCTCGC TCGCTCGC A chr3R:28326986-28327106 58 8.17e-06 ATTTGCTATC TCGCTCGC GCACGATGTA chr2L:21828047-21828167 14 8.17e-06 ACTCTCCTAC TCGCTCGC ACAGCAATGC chr2R:14000787-14000907 19 1.88e-05 ACAGCGTACA TCGCTCTC TTTGTTGCAT chr2L:13550757-13550877 35 1.88e-05 GCCGCAGctg tcgctctc tccttttccg chr2R:14008449-14008569 5 3.51e-05 CTTC TCGCTCCC CCAGCCACCC chr2L:15501216-15501336 97 3.51e-05 ACTTGACTTT TCGCTCCC CGCACTCCGT chrX:9135064-9135184 43 3.51e-05 AACTGCAACA TCGCTGGC AACTACAACA chr3L:21240345-21240465 96 3.51e-05 CAACAGTGAT TCGCTGGc aaacaaacaa chr2L:8825665-8825785 91 4.57e-05 actcggttgt tcgctgtc tcgaattcgg chrX:10212099-10212219 96 4.57e-05 ttgtCGCCTT TCGCTGTC GTTCGCCAac chr2L:9167093-9167213 90 4.57e-05 GACACCTGCG TCGCTGTC GCCAAAGTTG chr3R:16847487-16847607 53 5.20e-05 CGGCGGCGGT CCGCTCGC GCCGCTTTAC chr2L:21237119-21237239 7 6.65e-05 CCACCG TCGCTGCC TTGACGTATT chrX:2653614-2653734 32 6.65e-05 CTTCTTCTCG TCGCTGCC TTGTTTATTT chr3R:10614449-10614569 105 6.65e-05 CTGCGCAGGC GCGCTCGC ATCCTGGG chr3R:29771812-29771932 42 7.47e-05 CAACATGTGC CCGCTCTC TTGAGTGTTT chr3L:15626175-15626295 22 8.28e-05 TCTAAGTGCT GCGCTCTC GAAATGCGCC chr2R:9284005-9284125 107 8.28e-05 TTTATCGAAT GCGCTCTC ATTTGA chrX:10802207-10802327 75 9.55e-05 TCGTTTTCTC CCGCTCCC GCTTATCACT chr2R:17436537-17436657 97 1.16e-04 GCTTTTGCTG CCGCTGTC GTTTTTTCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCTSBC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7488720-7488840 8.2e-06 16_[+5]_96 chrX:8624957-8625077 8.2e-06 [+5]_112 chr2R:11603434-11603554 8.2e-06 63_[+5]_49 chr2R:10558888-10559008 8.2e-06 111_[+5]_1 chr3R:28326986-28327106 8.2e-06 57_[+5]_55 chr2L:21828047-21828167 8.2e-06 13_[+5]_99 chr2R:14000787-14000907 1.9e-05 18_[+5]_94 chr2L:13550757-13550877 1.9e-05 34_[+5]_78 chr2R:14008449-14008569 3.5e-05 4_[+5]_108 chr2L:15501216-15501336 3.5e-05 96_[+5]_16 chrX:9135064-9135184 3.5e-05 42_[+5]_70 chr3L:21240345-21240465 3.5e-05 95_[+5]_17 chr2L:8825665-8825785 4.6e-05 90_[+5]_22 chrX:10212099-10212219 4.6e-05 95_[+5]_17 chr2L:9167093-9167213 4.6e-05 89_[+5]_23 chr3R:16847487-16847607 5.2e-05 52_[+5]_60 chr2L:21237119-21237239 6.6e-05 6_[+5]_106 chrX:2653614-2653734 6.6e-05 31_[+5]_81 chr3R:10614449-10614569 6.6e-05 104_[+5]_8 chr3R:29771812-29771932 7.5e-05 41_[+5]_71 chr3L:15626175-15626295 8.3e-05 21_[+5]_91 chr2R:9284005-9284125 8.3e-05 106_[+5]_6 chrX:10802207-10802327 9.5e-05 74_[+5]_38 chr2R:17436537-17436657 0.00012 96_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCTSBC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGCTSBC width=8 seqs=24 chr2R:7488720-7488840 ( 17) TCGCTCGC 1 chrX:8624957-8625077 ( 1) TCGCTCGC 1 chr2R:11603434-11603554 ( 64) TCGCTCGC 1 chr2R:10558888-10559008 ( 112) TCGCTCGC 1 chr3R:28326986-28327106 ( 58) TCGCTCGC 1 chr2L:21828047-21828167 ( 14) TCGCTCGC 1 chr2R:14000787-14000907 ( 19) TCGCTCTC 1 chr2L:13550757-13550877 ( 35) TCGCTCTC 1 chr2R:14008449-14008569 ( 5) TCGCTCCC 1 chr2L:15501216-15501336 ( 97) TCGCTCCC 1 chrX:9135064-9135184 ( 43) TCGCTGGC 1 chr3L:21240345-21240465 ( 96) TCGCTGGC 1 chr2L:8825665-8825785 ( 91) TCGCTGTC 1 chrX:10212099-10212219 ( 96) TCGCTGTC 1 chr2L:9167093-9167213 ( 90) TCGCTGTC 1 chr3R:16847487-16847607 ( 53) CCGCTCGC 1 chr2L:21237119-21237239 ( 7) TCGCTGCC 1 chrX:2653614-2653734 ( 32) TCGCTGCC 1 chr3R:10614449-10614569 ( 105) GCGCTCGC 1 chr3R:29771812-29771932 ( 42) CCGCTCTC 1 chr3L:15626175-15626295 ( 22) GCGCTCTC 1 chr2R:9284005-9284125 ( 107) GCGCTCTC 1 chrX:10802207-10802327 ( 75) CCGCTCCC 1 chr2R:17436537-17436657 ( 97) CCGCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCTSBC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 1.5e+002 -1123 -38 -79 134 -1123 221 -1123 -1123 -1123 -1123 221 -1123 -1123 221 -1123 -1123 -1123 -1123 -1123 183 -1123 162 63 -1123 -1123 -6 95 42 -1123 221 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCTSBC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.5e+002 0.000000 0.166667 0.125000 0.708333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.208333 0.416667 0.375000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGCTSBC MEME-5 regular expression -------------------------------------------------------------------------------- TCGCT[CG][GTC]C -------------------------------------------------------------------------------- Time 31.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6732256-6732376 7.48e-01 120 chrX:10621765-10621885 4.19e-01 120 chr3L:690461-690581 1.42e-03 78_[+1(3.13e-05)]_34 chr3L:5950662-5950782 2.50e-04 48_[+2(1.50e-05)]_1_[+2(1.50e-05)]_\ 9_[+2(1.50e-05)]_1_[+2(1.50e-05)]_10_[+4(1.98e-05)]_11 chr3L:8623848-8623968 1.83e-01 120 chrX:6732459-6732579 4.77e-01 120 chr2R:24540560-24540680 1.31e-01 120 chr3L:20296906-20297026 2.35e-02 24_[+3(9.35e-05)]_88 chr3R:25883947-25884067 8.86e-03 54_[+2(3.48e-05)]_58 chr3L:11284763-11284883 4.83e-02 43_[+2(3.48e-05)]_37_[+2(1.50e-05)]_\ 10_[+2(3.48e-05)]_6 chr2L:19363753-19363873 2.87e-01 120 chr2L:21828047-21828167 3.55e-03 13_[+5(8.17e-06)]_99 chr3R:8806269-8806389 1.41e-02 48_[+2(3.48e-05)]_64 chr3R:24130205-24130325 2.72e-04 78_[+4(2.61e-05)]_34 chr3L:12773491-12773611 1.75e-01 120 chrX:6759511-6759631 1.06e-02 58_[+3(2.30e-05)]_54 chr2R:12439827-12439947 3.24e-01 120 chr2R:14004624-14004744 4.54e-04 65_[+2(5.47e-05)]_21_[+4(1.98e-05)]_\ 18 chrX:9142379-9142499 1.08e-02 28_[+3(7.05e-05)]_84 chr2R:14419866-14419986 3.16e-03 19_[+1(5.96e-05)]_16_[+1(9.62e-05)]_\ 59_[+1(3.13e-05)]_2 chr3R:11437696-11437816 5.30e-02 82_[+3(2.30e-05)]_30 chr2R:17683092-17683212 5.49e-04 10_[+3(4.06e-05)]_17_[+1(5.96e-05)]_\ 67_[+3(2.30e-05)]_2 chr2L:9167093-9167213 9.83e-05 37_[+2(3.48e-05)]_11_[+2(1.50e-05)]_\ 25_[+5(4.57e-05)]_23 chr3R:24134731-24134851 1.38e-01 94_[+2(3.48e-05)]_18 chr2R:20308632-20308752 4.19e-02 120 chr3L:21240345-21240465 2.12e-05 63_[+2(1.50e-05)]_8_[+2(1.50e-05)]_\ 8_[+5(3.51e-05)]_17 chr2R:22640136-22640256 4.77e-01 120 chr3L:10363485-10363605 6.59e-04 34_[+1(1.36e-05)]_10_[+1(1.36e-05)]_\ [+3(2.30e-05)]_52 chr2L:3159480-3159600 6.13e-01 120 chr2R:17078400-17078520 8.91e-01 120 chrX:10472687-10472807 2.56e-02 120 chr3L:8912394-8912514 7.33e-03 104_[+1(9.62e-05)]_8 chr2R:10582877-10582997 1.29e-02 54_[+4(1.98e-05)]_58 chr3R:14819951-14820071 5.82e-03 7_[+1(5.96e-05)]_105 chr2R:9444784-9444904 3.29e-06 56_[+4(8.48e-06)]_39_[+1(1.36e-05)]_\ 9 chr2R:18094667-18094787 5.07e-01 120 chr3L:18239643-18239763 1.12e-01 15_[+2(5.47e-05)]_4_[+2(5.47e-05)]_\ 85 chr2R:21475066-21475186 2.53e-03 5_[+2(8.10e-05)]_107 chr2R:17436537-17436657 4.69e-03 32_[+1(3.13e-05)]_80 chr2L:8478104-8478224 7.63e-01 120 chr2R:15750758-15750878 1.36e-01 120 chr2L:18947621-18947741 1.47e-01 120 chr2L:5208627-5208747 5.35e-01 120 chr2L:9568372-9568492 1.10e-04 29_[+1(8.25e-05)]_7_[+2(1.50e-05)]_\ 68 chr2R:12571943-12572063 1.12e-01 120 chrX:2652488-2652608 7.13e-02 12_[+2(3.48e-05)]_13_[+2(8.10e-05)]_\ 79 chr2L:14494983-14495103 8.47e-02 120 chr3L:5634545-5634665 3.30e-03 3_[+1(1.36e-05)]_109 chr2R:24956009-24956129 4.14e-02 35_[+1(1.36e-05)]_48_[+1(3.13e-05)]_\ 21 chr3R:28326986-28327106 1.95e-03 57_[+5(8.17e-06)]_41_[+2(8.10e-05)]_\ 6 chr2R:14030249-14030369 1.54e-03 8_[+4(8.48e-06)]_13_[+4(1.98e-05)]_\ 1_[+4(1.98e-05)]_1_[+2(1.50e-05)]_6_[+4(8.48e-06)]_15_[+2(1.50e-05)]_28 chrX:6700134-6700254 8.65e-05 36_[+2(3.48e-05)]_43_[+2(5.47e-05)]_\ 5_[+4(6.44e-05)]_1_[+2(1.50e-05)]_3 chr3R:10617235-10617355 3.02e-01 120 chr3L:3410150-3410270 5.85e-05 2_[+2(1.50e-05)]_12_[+2(1.50e-05)]_\ 12_[+2(1.50e-05)]_70 chr3L:10766606-10766726 5.23e-01 120 chr3L:11295277-11295397 1.54e-01 120 chrX:13563988-13564108 1.33e-02 79_[+4(1.98e-05)]_33 chr2R:15735139-15735259 3.61e-02 73_[+4(3.46e-05)]_39 chrX:6219839-6219959 1.27e-04 107_[+4(1.98e-05)]_5 chr2L:18944844-18944964 4.37e-03 58_[+3(2.30e-05)]_6_[+1(4.90e-05)]_\ 40 chr2L:9570747-9570867 3.81e-04 120 chr2L:16268428-16268548 7.01e-05 24_[+4(8.48e-06)]_46_[+3(7.05e-05)]_\ 34 chr2L:21628964-21629084 3.80e-02 120 chrX:9135064-9135184 1.08e-03 25_[+2(3.48e-05)]_9_[+5(3.51e-05)]_\ 70 chr3R:31213354-31213474 1.40e-02 104_[+2(1.50e-05)]_8 chr2R:19631093-19631213 6.90e-03 20_[+1(8.25e-05)]_39_[+2(8.10e-05)]_\ 3_[+2(8.10e-05)]_34 chr2R:11657873-11657993 6.40e-02 85_[+1(8.25e-05)]_27 chr3R:21629634-21629754 2.68e-01 120 chr2L:3000585-3000705 7.36e-03 80_[+2(3.48e-05)]_32 chr3L:21261717-21261837 2.35e-05 26_[+4(1.98e-05)]_30_[+3(2.30e-05)]_\ 10_[+4(2.61e-05)]_22_[+2(5.47e-05)] chr3R:11236195-11236315 1.15e-01 120 chr2R:10618340-10618460 2.97e-02 120 chr3R:14018680-14018800 9.08e-03 25_[+1(8.25e-05)]_9_[+3(2.30e-05)]_\ 70 chr2L:16520093-16520213 4.04e-03 13_[+3(7.05e-05)]_40_[+3(7.05e-05)]_\ 51 chr2L:5799314-5799434 4.46e-06 18_[+1(1.36e-05)]_62_[+2(3.48e-05)]_\ 24 chr2R:14503561-14503681 3.42e-01 120 chrX:6862668-6862788 3.18e-01 120 chr2R:19420786-19420906 1.03e-03 15_[+1(1.36e-05)]_97 chr3R:6426327-6426447 3.78e-03 120 chr2R:17803976-17804096 1.43e-02 89_[+1(3.13e-05)]_1_[+1(3.13e-05)]_\ 14 chrX:10739045-10739165 2.05e-01 120 chr3R:15913354-15913474 6.12e-03 50_[+1(5.96e-05)]_25_[+1(5.96e-05)]_\ 12_[+1(1.36e-05)]_9 chr3R:29771812-29771932 1.26e-04 18_[+2(3.48e-05)]_15_[+5(7.47e-05)]_\ 13_[+3(9.35e-05)]_50 chr2R:11453441-11453561 4.08e-01 120 chr2R:11604880-11605000 8.95e-02 91_[+4(4.74e-05)]_21 chr3R:19860838-19860958 5.67e-02 120 chr2R:17822305-17822425 6.52e-07 41_[+3(7.05e-05)]_48_[+4(8.48e-06)]_\ 15 chr3R:5060680-5060800 7.70e-02 120 chr2R:17869420-17869540 7.53e-02 26_[+1(1.36e-05)]_86 chr3L:1464621-1464741 9.31e-02 111_[+2(3.48e-05)]_1 chr3R:10614449-10614569 1.50e-01 104_[+5(6.65e-05)]_8 chr3L:1546039-1546159 8.07e-02 120 chr3R:21633860-21633980 4.50e-04 61_[+4(1.98e-05)]_[+4(3.46e-05)]_43 chrX:10802207-10802327 3.54e-04 [+1(3.13e-05)]_66_[+5(9.55e-05)]_38 chr2R:5122204-5122324 2.21e-02 103_[+3(7.05e-05)]_9 chr2L:6644683-6644803 6.83e-01 120 chr3R:24768021-24768141 1.73e-04 52_[+4(3.46e-05)]_36_[+3(9.35e-05)]_\ 16 chr2R:11198306-11198426 7.48e-02 76_[+2(8.10e-05)]_36 chr2L:12007070-12007190 7.46e-03 27_[+1(1.36e-05)]_69_[+3(7.05e-05)]_\ 8 chr2L:3575899-3576019 1.41e-01 120 chr2L:16321356-16321476 1.10e-02 51_[+1(4.90e-05)]_61 chrX:2653614-2653734 7.84e-06 31_[+5(6.65e-05)]_19_[+2(3.48e-05)]_\ 10_[+1(3.13e-05)]_36 chr2R:6964838-6964958 2.63e-01 120 chr3L:11285065-11285185 1.32e-03 39_[+2(1.50e-05)]_51_[+2(1.50e-05)]_\ 14 chr2R:16209730-16209850 6.40e-02 101_[+2(8.10e-05)]_11 chr2L:19159047-19159167 1.16e-03 89_[+3(2.30e-05)]_23 chr3R:29479303-29479423 3.68e-01 120 chrX:17658464-17658584 1.39e-03 38_[+3(2.30e-05)]_8_[+3(2.30e-05)]_\ 22_[+1(1.36e-05)]_3_[+1(3.13e-05)]_17 chr3L:1177127-1177247 1.33e-03 4_[+1(1.36e-05)]_33_[+1(3.13e-05)]_\ 1_[+1(3.13e-05)]_13_[+1(1.36e-05)]_37 chrX:14211621-14211741 4.91e-03 12_[+2(1.50e-05)]_100 chr2L:12507848-12507968 3.60e-04 5_[+4(1.98e-05)]_10_[+2(5.47e-05)]_\ 14_[+2(1.50e-05)]_67 chr3R:11759501-11759621 5.49e-03 20_[+1(4.90e-05)]_7_[+1(1.36e-05)]_\ 39_[+1(1.36e-05)]_30 chr2R:10558888-10559008 1.33e-02 107_[+5(8.17e-06)]_5 chr3R:24630113-24630233 2.32e-03 39_[+1(9.62e-05)]_73 chr3R:21835647-21835767 1.67e-01 99_[+4(4.74e-05)]_13 chr2L:19312623-19312743 2.01e-03 68_[+4(9.33e-05)]_44 chr3L:224568-224688 3.51e-02 62_[+2(1.50e-05)]_19_[+2(5.47e-05)]_\ 23 chr2R:9284005-9284125 7.69e-03 16_[+3(7.05e-05)]_82_[+5(8.28e-05)]_\ 6 chr2R:6156684-6156804 6.94e-03 120 chr2L:14497808-14497928 1.47e-02 67_[+1(5.96e-05)]_45 chr2R:7694399-7694519 4.78e-02 6_[+2(8.10e-05)]_4_[+2(1.50e-05)]_4_\ [+2(5.47e-05)]_82 chr2R:11175450-11175570 8.40e-02 120 chr3R:21852812-21852932 1.92e-01 120 chr2R:7890069-7890189 2.46e-03 25_[+1(1.36e-05)]_40_[+1(1.36e-05)]_\ 39 chr2R:18322179-18322299 8.32e-05 10_[+2(5.47e-05)]_32_[+1(4.90e-05)]_\ 62 chr2L:12010226-12010346 4.04e-01 120 chr3L:21205135-21205255 3.71e-01 120 chr2R:9865560-9865680 2.58e-03 7_[+1(4.90e-05)]_105 chr3R:14714230-14714350 3.94e-01 120 chrX:7947048-7947168 4.53e-02 120 chr2L:21237119-21237239 3.31e-04 6_[+5(6.65e-05)]_51_[+2(1.50e-05)]_\ 47 chr3R:16847487-16847607 9.39e-05 42_[+4(7.41e-05)]_2_[+5(5.20e-05)]_\ 38_[+1(9.62e-05)]_14 chr3R:11568772-11568892 3.67e-02 120 chr3L:22277354-22277474 6.58e-01 120 chr3R:14748521-14748641 2.09e-01 120 chr2L:7027148-7027268 1.57e-01 120 chr3R:12398843-12398963 2.26e-02 120 chr2R:18180033-18180153 4.36e-01 120 chr2L:15501216-15501336 1.48e-01 96_[+5(3.51e-05)]_16 chr2R:11603434-11603554 1.60e-04 8_[+1(1.36e-05)]_47_[+5(8.17e-06)]_\ 28_[+5(1.88e-05)]_13 chr2R:11582327-11582447 1.68e-03 12_[+1(8.25e-05)]_31_[+2(3.48e-05)]_\ 61 chr2R:14031672-14031792 3.76e-03 26_[+4(1.98e-05)]_4_[+4(1.98e-05)]_\ 1_[+4(1.98e-05)]_10_[+2(1.50e-05)]_12_[+4(1.98e-05)]_27 chr2R:12168912-12169032 1.30e-01 47_[+4(4.74e-05)]_65 chrX:17160469-17160589 4.03e-01 120 chr3R:21660698-21660818 2.97e-04 42_[+3(2.30e-05)]_31_[+4(9.33e-05)]_\ 31 chr3L:14625081-14625201 2.24e-02 102_[+3(9.35e-05)]_10 chr3R:21271302-21271422 9.32e-01 120 chr2L:13838777-13838897 1.67e-02 110_[+2(5.47e-05)]_2 chr3L:3394426-3394546 6.21e-02 19_[+2(5.47e-05)]_7_[+2(5.47e-05)]_\ 7_[+2(5.47e-05)]_4_[+2(5.47e-05)]_51 chr3R:26876556-26876676 1.31e-04 89_[+3(2.30e-05)]_23 chr3L:616727-616847 1.70e-02 120 chrX:1380438-1380558 2.45e-02 27_[+3(2.30e-05)]_85 chr3R:26980164-26980284 3.44e-01 120 chr3L:15626175-15626295 1.07e-03 21_[+5(8.28e-05)]_19_[+1(1.36e-05)]_\ 64 chr3L:7249327-7249447 6.84e-01 120 chrX:10212099-10212219 2.63e-03 66_[+3(2.30e-05)]_[+3(2.30e-05)]_13_\ [+5(4.57e-05)]_17 chr3L:698976-699096 1.27e-01 120 chr2R:19357481-19357601 2.15e-01 120 chr3L:3390645-3390765 1.15e-01 120 chrX:15591787-15591907 3.16e-01 120 chr2L:3862605-3862725 3.23e-01 120 chr3R:12716418-12716538 6.91e-01 120 chr2L:9576774-9576894 2.99e-01 120 chr2L:14024291-14024411 2.47e-03 3_[+3(2.30e-05)]_109 chr2R:21000232-21000352 3.10e-02 120 chr3R:21829558-21829678 5.44e-01 120 chr2R:21312367-21312487 5.01e-01 120 chr3R:24105637-24105757 3.90e-03 120 chr3R:5076838-5076958 8.21e-01 120 chr2L:7043206-7043326 7.81e-02 23_[+3(2.30e-05)]_89 chr2L:18454585-18454705 2.90e-01 120 chr2L:7158988-7159108 1.53e-01 120 chr3L:14131769-14131889 1.97e-02 120 chr2L:8825665-8825785 1.10e-05 56_[+2(1.50e-05)]_5_[+2(1.50e-05)]_\ 13_[+5(4.57e-05)]_22 chr3R:25074653-25074773 8.64e-02 69_[+2(8.10e-05)]_43 chr3R:10863063-10863183 7.10e-03 96_[+1(1.36e-05)]_16 chr2L:7998838-7998958 3.14e-01 120 chr3R:20328283-20328403 7.08e-02 68_[+3(9.35e-05)]_44 chr3R:26566946-26567066 7.68e-03 120 chr3L:1794235-1794355 6.92e-02 59_[+2(8.10e-05)]_53 chr3L:11790028-11790148 8.39e-01 120 chr2L:8009536-8009656 5.37e-01 120 chr3R:27559053-27559173 6.16e-03 60_[+1(3.13e-05)]_52 chr2L:2494649-2494769 6.71e-02 120 chr2L:13550757-13550877 3.87e-04 10_[+1(4.90e-05)]_16_[+5(1.88e-05)]_\ 78 chr3R:22367201-22367321 1.99e-01 1_[+2(8.10e-05)]_111 chr3R:15347934-15348054 9.55e-01 120 chr3R:12980671-12980791 7.47e-01 120 chr2R:18811955-18812075 2.75e-02 120 chrX:17175869-17175989 8.46e-02 120 chr3R:26235185-26235305 3.81e-01 120 chr2L:1427973-1428093 4.48e-01 120 chr3R:10140328-10140448 5.59e-01 120 chr2R:21091922-21092042 7.59e-01 120 chr2L:17384624-17384744 1.01e-02 104_[+2(5.47e-05)]_8 chr2R:15135590-15135710 2.39e-05 36_[+1(1.36e-05)]_76 chr3R:26230245-26230365 3.62e-01 120 chr2R:14000787-14000907 5.45e-08 18_[+5(1.88e-05)]_[+1(4.90e-05)]_37_\ [+2(5.47e-05)]_7_[+4(8.48e-06)]_18_[+2(1.50e-05)] chrX:16296552-16296672 7.02e-04 5_[+3(4.06e-05)]_69_[+4(3.46e-05)]_\ 30 chr3R:14285199-14285319 1.20e-03 50_[+2(1.50e-05)]_62 chr3R:9430506-9430626 4.74e-02 83_[+3(7.05e-05)]_29 chr2R:18775380-18775500 6.20e-02 32_[+3(2.30e-05)]_80 chr3L:10767543-10767663 2.47e-04 53_[+2(5.47e-05)]_12_[+2(3.48e-05)]_\ 16_[+1(9.62e-05)]_15 chr3R:16282279-16282399 2.40e-01 120 chr2R:17766957-17767077 1.77e-02 29_[+4(9.33e-05)]_83 chr2R:12274289-12274409 1.62e-02 87_[+4(1.98e-05)]_25 chr3L:19040310-19040430 7.03e-01 120 chr3L:11273847-11273967 7.00e-01 120 chr3R:16276208-16276328 2.34e-01 120 chrX:8624957-8625077 3.08e-07 [+5(8.17e-06)]_61_[+4(4.74e-05)]_19_\ [+1(1.36e-05)]_16 chr3R:13016406-13016526 6.72e-03 29_[+3(2.30e-05)]_83 chr3R:19164427-19164547 8.75e-03 120 chr3R:16005209-16005329 2.02e-06 24_[+1(3.13e-05)]_39_[+2(1.50e-05)]_\ 32_[+3(7.05e-05)]_1 chr2L:13833170-13833290 6.52e-01 120 chr2R:14494821-14494941 7.27e-02 120 chr2R:9554105-9554225 5.08e-03 120 chr3R:16704372-16704492 6.41e-02 120 chr2R:11605081-11605201 2.46e-01 120 chr2R:18242146-18242266 3.50e-02 91_[+1(1.36e-05)]_21 chr3L:6609328-6609448 9.91e-01 120 chr3R:4996569-4996689 3.98e-01 120 chr2R:10023911-10024031 3.18e-01 120 chrX:20506083-20506203 9.76e-01 120 chr3R:21017623-21017743 1.84e-04 57_[+4(2.61e-05)]_22_[+1(4.90e-05)]_\ 25 chr4:56231-56351 1.65e-02 120 chr3R:21200155-21200275 1.96e-01 120 chr3L:4614080-4614200 9.56e-02 120 chr3L:629601-629721 7.60e-04 12_[+1(3.13e-05)]_10_[+1(1.36e-05)]_\ 82 chr2R:24402742-24402862 8.66e-01 120 chr2R:7488720-7488840 3.03e-05 16_[+5(8.17e-06)]_96 chrX:11548776-11548896 9.02e-01 120 chr3L:21961990-21962110 2.70e-01 69_[+2(8.10e-05)]_43 chr3R:21865172-21865292 7.84e-03 36_[+1(8.25e-05)]_6_[+3(7.05e-05)]_\ 62 chrX:4427079-4427199 5.03e-02 120 chr2L:16476575-16476695 8.28e-03 48_[+4(2.61e-05)]_64 chr3L:3450736-3450856 1.55e-02 33_[+1(8.25e-05)]_79 chr3R:8033234-8033354 5.47e-03 109_[+3(9.35e-05)]_3 chr3R:29869207-29869327 1.72e-01 120 chr3R:20542405-20542525 9.76e-01 120 chr3R:7103602-7103722 8.70e-03 25_[+1(1.36e-05)]_87 chr2R:14008449-14008569 1.06e-02 4_[+5(3.51e-05)]_108 chr2R:10478152-10478272 4.16e-01 120 chrX:7333346-7333466 3.34e-01 120 chr3L:361316-361436 9.76e-01 120 chr3L:8525152-8525272 3.14e-02 120 chr2L:16269282-16269402 2.63e-01 120 chr2L:21629168-21629288 1.32e-02 37_[+2(3.48e-05)]_75 chrX:11622195-11622315 1.63e-03 9_[+3(2.30e-05)]_27_[+2(5.47e-05)]_\ 49_[+3(9.35e-05)]_11 chr2R:22174684-22174804 1.34e-02 51_[+3(2.30e-05)]_61 chrX:11715440-11715560 7.47e-05 39_[+1(8.25e-05)]_15_[+4(2.61e-05)]_\ 50 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************