******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34406.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:30295101-30295221 1.0000 120 chr3L:12915561-12915681 1.0000 120 chr2R:12646924-12647044 1.0000 120 chr3R:23496650-23496770 1.0000 120 chr3L:5128375-5128495 1.0000 120 chr3L:16174873-16174993 1.0000 120 chr2L:3189046-3189166 1.0000 120 chr3L:10786026-10786146 1.0000 120 chr3L:6270468-6270588 1.0000 120 chr3L:5365303-5365423 1.0000 120 chr2L:7199690-7199810 1.0000 120 chr3R:24206086-24206206 1.0000 120 chrX:16873218-16873338 1.0000 120 chrX:8255075-8255195 1.0000 120 chrX:17113414-17113534 1.0000 120 chrX:342566-342686 1.0000 120 chr2R:18109679-18109799 1.0000 120 chr3L:20729574-20729694 1.0000 120 chrX:19281399-19281519 1.0000 120 chr2L:11052517-11052637 1.0000 120 chr3L:6269137-6269257 1.0000 120 chr3R:21649578-21649698 1.0000 120 chr3L:10942611-10942731 1.0000 120 chr2L:5429213-5429333 1.0000 120 chr2R:9065332-9065452 1.0000 120 chr3L:18137329-18137449 1.0000 120 chr2R:23632032-23632152 1.0000 120 chr3R:30256401-30256521 1.0000 120 chr3L:2636515-2636635 1.0000 120 chrX:14897769-14897889 1.0000 120 chr3L:1374593-1374713 1.0000 120 chr2R:20646230-20646350 1.0000 120 chr3L:15174214-15174334 1.0000 120 chr3R:6233194-6233314 1.0000 120 chr2L:18468151-18468271 1.0000 120 chr2R:21495578-21495698 1.0000 120 chr3R:6106834-6106954 1.0000 120 chrX:17493721-17493841 1.0000 120 chr3R:22424124-22424244 1.0000 120 chr3L:20990380-20990500 1.0000 120 chr2R:7531326-7531446 1.0000 120 chr3R:17122870-17122990 1.0000 120 chr3R:7336567-7336687 1.0000 120 chr2L:6508820-6508940 1.0000 120 chr2L:2184785-2184905 1.0000 120 chr3R:18275537-18275657 1.0000 120 chr3R:30843219-30843339 1.0000 120 chrX:18540458-18540578 1.0000 120 chrX:13235177-13235297 1.0000 120 chr3L:6471928-6472048 1.0000 120 chr3R:24886626-24886746 1.0000 120 chr3R:17202443-17202563 1.0000 120 chr2R:18199040-18199160 1.0000 120 chr2L:4915760-4915880 1.0000 120 chr3R:17825950-17826070 1.0000 120 chr2L:12823717-12823837 1.0000 120 chr2R:19968784-19968904 1.0000 120 chr3L:21080592-21080712 1.0000 120 chr3R:13934754-13934874 1.0000 120 chr2L:11870994-11871114 1.0000 120 chr3L:6838635-6838755 1.0000 120 chr3L:16204230-16204350 1.0000 120 chr3L:12016331-12016451 1.0000 120 chr2L:18482253-18482373 1.0000 120 chr3R:26429751-26429871 1.0000 120 chr2R:22529702-22529822 1.0000 120 chr3R:22194896-22195016 1.0000 120 chrX:3055946-3056066 1.0000 120 chr3L:13393690-13393810 1.0000 120 chrX:11658575-11658695 1.0000 120 chr2R:22316613-22316733 1.0000 120 chr3R:21931412-21931532 1.0000 120 chr3L:10786229-10786349 1.0000 120 chr3R:31991893-31992013 1.0000 120 chr3L:15209181-15209301 1.0000 120 chrX:12663060-12663180 1.0000 120 chr3R:31225143-31225263 1.0000 120 chr2L:16594054-16594174 1.0000 120 chr3R:22539012-22539132 1.0000 120 chr3R:31688762-31688882 1.0000 120 chr3L:10952245-10952365 1.0000 120 chrX:17187647-17187767 1.0000 120 chr3L:13213132-13213252 1.0000 120 chrX:18273276-18273396 1.0000 120 chr3R:8968961-8969081 1.0000 120 chr3R:6343702-6343822 1.0000 120 chr3R:14691516-14691636 1.0000 120 chr3L:6085248-6085368 1.0000 120 chr3R:9346688-9346808 1.0000 120 chr2L:20956949-20957069 1.0000 120 chr3R:21648586-21648706 1.0000 120 chr3R:25461797-25461917 1.0000 120 chr3L:5096809-5096929 1.0000 120 chr3R:9913572-9913692 1.0000 120 chr2R:21569764-21569884 1.0000 120 chr2L:14995170-14995290 1.0000 120 chr3L:15258513-15258633 1.0000 120 chr2R:10580623-10580743 1.0000 120 chr2R:19620137-19620257 1.0000 120 chrX:17678144-17678264 1.0000 120 chr2L:19162835-19162955 1.0000 120 chr3L:8157190-8157310 1.0000 120 chrX:18256567-18256687 1.0000 120 chr2L:11395801-11395921 1.0000 120 chr2L:7619402-7619522 1.0000 120 chr3R:23508434-23508554 1.0000 120 chr2R:19153375-19153495 1.0000 120 chr3L:776283-776403 1.0000 120 chr2L:18466359-18466479 1.0000 120 chrX:13568241-13568361 1.0000 120 chr3R:29758526-29758646 1.0000 120 chr3R:28848059-28848179 1.0000 120 chrX:3867148-3867268 1.0000 120 chr2R:14969736-14969856 1.0000 120 chr2L:16503099-16503219 1.0000 120 chr3R:14389336-14389456 1.0000 120 chr2R:19616012-19616132 1.0000 120 chr3R:14048848-14048968 1.0000 120 chr2L:7574393-7574513 1.0000 120 chr3L:10928142-10928262 1.0000 120 chrX:5897168-5897288 1.0000 120 chrX:2365488-2365608 1.0000 120 chr2L:15304459-15304579 1.0000 120 chrX:17879413-17879533 1.0000 120 chr3R:10530684-10530804 1.0000 120 chr3L:11373903-11374023 1.0000 120 chr3L:1064551-1064671 1.0000 120 chr3R:8470689-8470809 1.0000 120 chrX:6022201-6022321 1.0000 120 chr3R:14498219-14498339 1.0000 120 chr3R:24906135-24906255 1.0000 120 chr2L:5290016-5290136 1.0000 120 chrX:19878873-19878993 1.0000 120 chr2L:4348682-4348802 1.0000 120 chrX:7537963-7538083 1.0000 120 chr3R:27140069-27140189 1.0000 120 chr3R:22628046-22628166 1.0000 120 chr2L:18517119-18517239 1.0000 120 chr2R:10237781-10237901 1.0000 120 chrX:739958-740078 1.0000 120 chr3R:11614652-11614772 1.0000 120 chrX:18272460-18272580 1.0000 120 chr2R:10771999-10772119 1.0000 120 chrX:2358347-2358467 1.0000 120 chr2R:8650607-8650727 1.0000 120 chr3R:21733066-21733186 1.0000 120 chr2L:9447907-9448027 1.0000 120 chr2L:12602279-12602399 1.0000 120 chrX:22479447-22479567 1.0000 120 chr3L:10562400-10562520 1.0000 120 chr3L:9419453-9419573 1.0000 120 chr2L:7973884-7974004 1.0000 120 chr3L:9551277-9551397 1.0000 120 chr3L:11322618-11322738 1.0000 120 chr2L:10615929-10616049 1.0000 120 chr3L:18198962-18199082 1.0000 120 chr2L:18146765-18146885 1.0000 120 chr2L:15385512-15385632 1.0000 120 chr3L:10697087-10697207 1.0000 120 chrX:6059272-6059392 1.0000 120 chr2L:2931905-2932025 1.0000 120 chr3R:16154400-16154520 1.0000 120 chr3R:22324894-22325014 1.0000 120 chrX:19145236-19145356 1.0000 120 chr3L:531403-531523 1.0000 120 chr2L:18352980-18353100 1.0000 120 chr3L:2835113-2835233 1.0000 120 chr2L:675052-675172 1.0000 120 chr2R:15745316-15745436 1.0000 120 chr2L:20913062-20913182 1.0000 120 chr2L:11222208-11222328 1.0000 120 chr2R:18256974-18257094 1.0000 120 chr3L:3343364-3343484 1.0000 120 chrX:12596552-12596672 1.0000 120 chr2R:19985099-19985219 1.0000 120 chr2L:3341688-3341808 1.0000 120 chr3L:4722020-4722140 1.0000 120 chr2R:14975248-14975368 1.0000 120 chr2R:6147589-6147709 1.0000 120 chr2L:16406657-16406777 1.0000 120 chrX:6077115-6077235 1.0000 120 chr3R:8029725-8029845 1.0000 120 chrX:17542863-17542983 1.0000 120 chr3L:818509-818629 1.0000 120 chr3R:31505253-31505373 1.0000 120 chr2L:5483217-5483337 1.0000 120 chrX:1612042-1612162 1.0000 120 chrX:10104620-10104740 1.0000 120 chrX:19230001-19230121 1.0000 120 chr2R:14968031-14968151 1.0000 120 chr3R:26900103-26900223 1.0000 120 chr3L:20952221-20952341 1.0000 120 chr2R:10439090-10439210 1.0000 120 chrX:8215719-8215839 1.0000 120 chrX:19224985-19225105 1.0000 120 chrX:4197610-4197730 1.0000 120 chr3L:12442730-12442850 1.0000 120 chr2L:13572250-13572370 1.0000 120 chr3L:16015916-16016036 1.0000 120 chr2L:16590832-16590952 1.0000 120 chrX:13278190-13278310 1.0000 120 chrX:3411949-3412069 1.0000 120 chr2R:14513634-14513754 1.0000 120 chr2L:18648363-18648483 1.0000 120 chr2R:19903241-19903361 1.0000 120 chr3L:12410956-12411076 1.0000 120 chr2L:9235623-9235743 1.0000 120 chr2L:19364808-19364928 1.0000 120 chr3L:19557373-19557493 1.0000 120 chrX:7968500-7968620 1.0000 120 chr2R:17459057-17459177 1.0000 120 chr3R:14847328-14847448 1.0000 120 chr2R:10213640-10213760 1.0000 120 chr3R:23486902-23487022 1.0000 120 chr2R:12733018-12733138 1.0000 120 chr2R:10559946-10560066 1.0000 120 chr3R:30284105-30284225 1.0000 120 chr3L:785843-785963 1.0000 120 chr3L:10352227-10352347 1.0000 120 chrX:3381148-3381268 1.0000 120 chrX:13245875-13245995 1.0000 120 chr3R:10588845-10588965 1.0000 120 chr2L:488359-488479 1.0000 120 chr2L:7879665-7879785 1.0000 120 chr3L:3078626-3078746 1.0000 120 chrX:7535022-7535142 1.0000 120 chr3R:22195819-22195939 1.0000 120 chrX:17490025-17490145 1.0000 120 chr2R:24163454-24163574 1.0000 120 chr3L:1388249-1388369 1.0000 120 chr3R:11947228-11947348 1.0000 120 chr3L:16211231-16211351 1.0000 120 chrX:15642220-15642340 1.0000 120 chr3L:1084502-1084622 1.0000 120 chr2L:16438059-16438179 1.0000 120 chr2R:7147243-7147363 1.0000 120 chrX:18834549-18834669 1.0000 120 chr2R:18894883-18895003 1.0000 120 chr2L:4211366-4211486 1.0000 120 chr2L:6472500-6472620 1.0000 120 chr2R:21569028-21569148 1.0000 120 chr3L:8027767-8027887 1.0000 120 chrX:19160035-19160155 1.0000 120 chr3R:9230353-9230473 1.0000 120 chrX:17562713-17562833 1.0000 120 chr3L:18114099-18114219 1.0000 120 chrX:13679713-13679833 1.0000 120 chr3L:8763284-8763404 1.0000 120 chrX:19162367-19162487 1.0000 120 chr2R:19849274-19849394 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG34406/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34406.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.365 C 0.142 G 0.137 T 0.356 Background letter frequencies (from file dataset with add-one prior applied): A 0.365 C 0.142 G 0.137 T 0.356 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCGGTTCG MEME-1 width = 8 sites = 5 llr = 63 E-value = 6.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGTTCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8a:2::a: probability G 2:a8:2:a matrix T ::::a8:: bits 2.9 ** ** 2.6 ** ** 2.3 ** ** 2.0 **** ** Relative 1.7 **** ** Entropy 1.4 ***** ** (18.2 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCGGTTCG consensus G C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTTCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3078626-3078746 89 9.33e-07 TCTCATGATA CCGGTTCG ATTTACCGAA chr3R:6106834-6106954 92 9.33e-07 TAAACCCGAA CCGGTTCG CAAACTGGAA chr3R:14498219-14498339 46 1.29e-06 GGTGTGACTG CCGGTGCG TAAAAGTAAA chr2L:18466359-18466479 44 3.16e-06 GAATTTAACT GCGGTTCG TGGCATTAAA chrX:14897769-14897889 17 3.16e-06 CTAACCGATT CCGCTTCG CATATGCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTTCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3078626-3078746 9.3e-07 88_[+1]_24 chr3R:6106834-6106954 9.3e-07 91_[+1]_21 chr3R:14498219-14498339 1.3e-06 45_[+1]_67 chr2L:18466359-18466479 3.2e-06 43_[+1]_69 chrX:14897769-14897889 3.2e-06 16_[+1]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTTCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGTTCG width=8 seqs=5 chr3L:3078626-3078746 ( 89) CCGGTTCG 1 chr3R:6106834-6106954 ( 92) CCGGTTCG 1 chr3R:14498219-14498339 ( 46) CCGGTGCG 1 chr2L:18466359-18466479 ( 44) GCGGTTCG 1 chrX:14897769-14897889 ( 17) CCGCTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTTCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 6.4e+002 -897 250 55 -897 -897 282 -897 -897 -897 -897 287 -897 -897 50 254 -897 -897 -897 -897 149 -897 -897 55 117 -897 282 -897 -897 -897 -897 287 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTTCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.4e+002 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTTCG MEME-1 regular expression -------------------------------------------------------------------------------- [CG]CG[GC]T[TG]CG -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGCAGSS MEME-2 width = 8 sites = 9 llr = 101 E-value = 9.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGCAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8::a::: pos.-specific C :::8:137 probability G a:a2:973 matrix T :2:::::: bits 2.9 * * 2.6 * * 2.3 * * * 2.0 * ** *** Relative 1.7 * ** *** Entropy 1.4 * ****** (16.2 bits) 1.1 * ****** 0.9 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GAGCAGGC consensus T G CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16154400-16154520 106 9.46e-07 TGCAGTTGGG GAGCAGGC GAAGTTT chr3R:9230353-9230473 79 2.84e-06 GATGTGTAGC GAGCAGGG TATCAAAAGG chr2R:10559946-10560066 31 2.84e-06 AAATACAGTG GAGCAGCC TTAAGCTCGT chr3L:2835113-2835233 13 2.84e-06 TTGTTTGGGA GAGCAGCC TGTTGAGGAT chr3R:27140069-27140189 35 2.84e-06 TGTAAGTAAC GAGCAGGG TTTTTGGAAA chr3L:10786229-10786349 112 9.30e-06 TTTAAAAACC GAGGAGCC a chr2R:9065332-9065452 111 9.30e-06 CCGAACTAAA GTGCAGGG TA chr2R:19616012-19616132 60 1.03e-05 ATCTCTTCGA GAGCACGC ATGCAAACTG chrX:5897168-5897288 15 1.12e-05 AATGGCCACA GTGGAGGC CAGAATACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16154400-16154520 9.5e-07 105_[+2]_7 chr3R:9230353-9230473 2.8e-06 78_[+2]_34 chr2R:10559946-10560066 2.8e-06 30_[+2]_82 chr3L:2835113-2835233 2.8e-06 12_[+2]_100 chr3R:27140069-27140189 2.8e-06 34_[+2]_78 chr3L:10786229-10786349 9.3e-06 111_[+2]_1 chr2R:9065332-9065452 9.3e-06 110_[+2]_2 chr2R:19616012-19616132 1e-05 59_[+2]_53 chrX:5897168-5897288 1.1e-05 14_[+2]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGCAGSS width=8 seqs=9 chr3R:16154400-16154520 ( 106) GAGCAGGC 1 chr3R:9230353-9230473 ( 79) GAGCAGGG 1 chr2R:10559946-10560066 ( 31) GAGCAGCC 1 chr3L:2835113-2835233 ( 13) GAGCAGCC 1 chr3R:27140069-27140189 ( 35) GAGCAGGG 1 chr3L:10786229-10786349 ( 112) GAGGAGCC 1 chr2R:9065332-9065452 ( 111) GTGCAGGG 1 chr2R:19616012-19616132 ( 60) GAGCACGC 1 chrX:5897168-5897288 ( 15) GTGGAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 9.5e+001 -982 -982 287 -982 109 -982 -982 -68 -982 -982 287 -982 -982 246 70 -982 145 -982 -982 -982 -982 -35 270 -982 -982 123 228 -982 -982 223 128 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 9.5e+001 0.000000 0.000000 1.000000 0.000000 0.777778 0.000000 0.000000 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.222222 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCAGSS MEME-2 regular expression -------------------------------------------------------------------------------- G[AT]G[CG]AG[GC][CG] -------------------------------------------------------------------------------- Time 13.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCWGGGG MEME-3 width = 8 sites = 4 llr = 51 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCWGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::5:::: pos.-specific C ::a:3::: probability G :a::8aaa matrix T a::5:::: bits 2.9 ** *** 2.6 ** *** 2.3 ** *** 2.0 ** **** Relative 1.7 ** **** Entropy 1.4 *** **** (18.3 bits) 1.1 *** **** 0.9 *** **** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGCAGGGG consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1388249-1388369 23 1.76e-06 GTTTAAAAGT TGCAGGGG TCTCCCATTG chr3R:26900103-26900223 7 1.76e-06 GCGTGC TGCTGGGG AATGATGATT chr2L:7619402-7619522 68 1.76e-06 TGGACTTTAA TGCTGGGG TATTTCAAAG chrX:2358347-2358467 2 3.58e-06 A TGCACGGG AAATGGTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1388249-1388369 1.8e-06 22_[+3]_90 chr3R:26900103-26900223 1.8e-06 6_[+3]_106 chr2L:7619402-7619522 1.8e-06 67_[+3]_45 chrX:2358347-2358467 3.6e-06 1_[+3]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCWGGGG width=8 seqs=4 chr3L:1388249-1388369 ( 23) TGCAGGGG 1 chr3R:26900103-26900223 ( 7) TGCTGGGG 1 chr2L:7619402-7619522 ( 68) TGCTGGGG 1 chrX:2358347-2358467 ( 2) TGCACGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 3.1e+003 -865 -865 -865 149 -865 -865 286 -865 -865 282 -865 -865 45 -865 -865 49 -865 82 245 -865 -865 -865 286 -865 -865 -865 286 -865 -865 -865 286 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.1e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGGGG MEME-3 regular expression -------------------------------------------------------------------------------- TGC[AT][GC]GGG -------------------------------------------------------------------------------- Time 20.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGSCSAG MEME-4 width = 8 sites = 2 llr = 27 E-value = 8.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGSCSAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C :::5a5:: probability G aaa5:5:a matrix T :::::::: bits 2.9 *** * * 2.6 *** * * 2.3 *** * * 2.0 *** * * Relative 1.7 ****** * Entropy 1.4 ******** (19.4 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGGCCCAG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSCSAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:31505253-31505373 5 1.42e-06 TTAG GGGGCGAG TTGGTGGATG chr3R:22539012-22539132 20 1.42e-06 CTAAAACTTC GGGCCCAG GATATTAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSCSAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31505253-31505373 1.4e-06 4_[+4]_108 chr3R:22539012-22539132 1.4e-06 19_[+4]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSCSAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGSCSAG width=8 seqs=2 chr3R:31505253-31505373 ( 5) GGGGCGAG 1 chr3R:22539012-22539132 ( 20) GGGCCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSCSAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.3e+003 -765 -765 286 -765 -765 -765 286 -765 -765 -765 286 -765 -765 182 186 -765 -765 281 -765 -765 -765 182 186 -765 145 -765 -765 -765 -765 -765 286 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSCSAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSCSAG MEME-4 regular expression -------------------------------------------------------------------------------- GGG[CG]C[CG]AG -------------------------------------------------------------------------------- Time 26.45 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTGCAG MEME-5 width = 8 sites = 5 llr = 59 E-value = 7.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTGCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::6: pos.-specific C :2:::8:: probability G a8a2a22a matrix T :::8::2: bits 2.9 * * * * 2.6 * * * * 2.3 * * * * 2.0 *** ** * Relative 1.7 *** ** * Entropy 1.4 *** ** * (17.1 bits) 1.1 ****** * 0.9 ****** * 0.6 ****** * 0.3 ******** 0.0 -------- Multilevel GGGTGCAG consensus C G GG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12733018-12733138 69 8.91e-07 TATATTAAAT GGGTGCAG ACCTAGCTTA chr2R:14975248-14975368 12 1.22e-06 TTTTATTTTT GGGTGCGG TTGTAGGGCT chr3R:14847328-14847448 31 2.56e-06 AACTCTTTTT GGGTGCTG CGAGCTCAAC chr3R:22195819-22195939 30 4.35e-06 GCTCCAGAGG GCGTGCAG TTGTTTAAAT chrX:11658575-11658695 4 6.04e-06 TGA GGGGGGAG AGTGGGGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12733018-12733138 8.9e-07 68_[+5]_44 chr2R:14975248-14975368 1.2e-06 11_[+5]_101 chr3R:14847328-14847448 2.6e-06 30_[+5]_82 chr3R:22195819-22195939 4.3e-06 29_[+5]_83 chrX:11658575-11658695 6e-06 3_[+5]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTGCAG width=8 seqs=5 chr2R:12733018-12733138 ( 69) GGGTGCAG 1 chr2R:14975248-14975368 ( 12) GGGTGCGG 1 chr3R:14847328-14847448 ( 31) GGGTGCTG 1 chr3R:22195819-22195939 ( 30) GCGTGCAG 1 chrX:11658575-11658695 ( 4) GGGGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 7.5e+003 -897 -897 287 -897 -897 50 254 -897 -897 -897 287 -897 -897 -897 55 117 -897 -897 287 -897 -897 250 55 -897 72 -897 55 -83 -897 -897 287 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.600000 0.000000 0.200000 0.200000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTGCAG MEME-5 regular expression -------------------------------------------------------------------------------- G[GC]G[TG]G[CG][AGT]G -------------------------------------------------------------------------------- Time 32.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30295101-30295221 9.86e-01 120 chr3L:12915561-12915681 1.00e+00 120 chr2R:12646924-12647044 9.85e-01 120 chr3R:23496650-23496770 1.75e-01 120 chr3L:5128375-5128495 5.41e-01 120 chr3L:16174873-16174993 1.00e+00 120 chr2L:3189046-3189166 3.95e-01 120 chr3L:10786026-10786146 5.63e-01 120 chr3L:6270468-6270588 7.17e-02 120 chr3L:5365303-5365423 2.02e-02 120 chr2L:7199690-7199810 7.64e-01 120 chr3R:24206086-24206206 7.98e-01 120 chrX:16873218-16873338 4.98e-02 120 chrX:8255075-8255195 5.26e-01 120 chrX:17113414-17113534 8.83e-01 120 chrX:342566-342686 9.49e-01 120 chr2R:18109679-18109799 4.33e-01 120 chr3L:20729574-20729694 6.90e-01 120 chrX:19281399-19281519 4.58e-03 98_[+4(5.56e-05)]_14 chr2L:11052517-11052637 7.55e-01 120 chr3L:6269137-6269257 7.20e-01 120 chr3R:21649578-21649698 1.10e-01 120 chr3L:10942611-10942731 7.74e-01 120 chr2L:5429213-5429333 1.36e-02 120 chr2R:9065332-9065452 1.59e-05 110_[+2(9.30e-06)]_2 chr3L:18137329-18137449 4.06e-01 120 chr2R:23632032-23632152 7.97e-01 120 chr3R:30256401-30256521 1.00e+00 120 chr3L:2636515-2636635 1.09e-01 120 chrX:14897769-14897889 1.61e-02 16_[+1(3.16e-06)]_96 chr3L:1374593-1374713 4.05e-01 120 chr2R:20646230-20646350 3.78e-03 96_[+1(5.13e-05)]_16 chr3L:15174214-15174334 9.98e-01 120 chr3R:6233194-6233314 1.37e-02 120 chr2L:18468151-18468271 9.48e-01 120 chr2R:21495578-21495698 1.46e-01 120 chr3R:6106834-6106954 1.48e-02 91_[+1(9.33e-07)]_21 chrX:17493721-17493841 4.40e-02 120 chr3R:22424124-22424244 5.60e-01 120 chr3L:20990380-20990500 6.47e-01 120 chr2R:7531326-7531446 9.99e-01 120 chr3R:17122870-17122990 9.49e-01 120 chr3R:7336567-7336687 6.66e-01 120 chr2L:6508820-6508940 9.86e-01 120 chr2L:2184785-2184905 9.36e-01 120 chr3R:18275537-18275657 2.50e-01 120 chr3R:30843219-30843339 2.21e-01 120 chrX:18540458-18540578 1.06e-02 90_[+3(7.24e-05)]_22 chrX:13235177-13235297 4.60e-02 120 chr3L:6471928-6472048 3.18e-01 120 chr3R:24886626-24886746 9.86e-01 120 chr3R:17202443-17202563 9.09e-01 120 chr2R:18199040-18199160 9.15e-01 120 chr2L:4915760-4915880 9.04e-01 120 chr3R:17825950-17826070 1.16e-01 120 chr2L:12823717-12823837 1.00e+00 120 chr2R:19968784-19968904 2.77e-02 120 chr3L:21080592-21080712 6.39e-01 120 chr3R:13934754-13934874 6.59e-01 120 chr2L:11870994-11871114 7.03e-01 120 chr3L:6838635-6838755 9.97e-01 120 chr3L:16204230-16204350 3.27e-01 120 chr3L:12016331-12016451 6.83e-01 120 chr2L:18482253-18482373 9.60e-01 120 chr3R:26429751-26429871 9.93e-01 120 chr2R:22529702-22529822 9.10e-01 120 chr3R:22194896-22195016 7.04e-01 120 chrX:3055946-3056066 9.28e-01 120 chr3L:13393690-13393810 9.43e-01 120 chrX:11658575-11658695 1.70e-06 3_[+5(6.04e-06)]_109 chr2R:22316613-22316733 2.67e-01 120 chr3R:21931412-21931532 2.52e-01 105_[+3(7.24e-05)]_7 chr3L:10786229-10786349 6.17e-04 111_[+2(9.30e-06)]_1 chr3R:31991893-31992013 9.86e-01 120 chr3L:15209181-15209301 9.99e-01 120 chrX:12663060-12663180 9.89e-01 120 chr3R:31225143-31225263 1.88e-03 120 chr2L:16594054-16594174 6.49e-01 120 chr3R:22539012-22539132 8.34e-04 19_[+4(1.42e-06)]_93 chr3R:31688762-31688882 4.18e-01 120 chr3L:10952245-10952365 9.68e-01 120 chrX:17187647-17187767 9.06e-01 120 chr3L:13213132-13213252 9.97e-01 120 chrX:18273276-18273396 3.70e-01 120 chr3R:8968961-8969081 2.69e-01 120 chr3R:6343702-6343822 1.61e-01 120 chr3R:14691516-14691636 2.85e-02 120 chr3L:6085248-6085368 1.00e+00 120 chr3R:9346688-9346808 8.72e-01 120 chr2L:20956949-20957069 4.89e-01 120 chr3R:21648586-21648706 7.46e-01 120 chr3R:25461797-25461917 9.09e-01 120 chr3L:5096809-5096929 1.97e-01 120 chr3R:9913572-9913692 6.98e-01 120 chr2R:21569764-21569884 6.71e-01 120 chr2L:14995170-14995290 1.00e+00 120 chr3L:15258513-15258633 8.00e-01 120 chr2R:10580623-10580743 1.62e-01 120 chr2R:19620137-19620257 2.38e-01 120 chrX:17678144-17678264 1.70e-02 120 chr2L:19162835-19162955 5.20e-01 120 chr3L:8157190-8157310 1.74e-01 120 chrX:18256567-18256687 9.88e-01 120 chr2L:11395801-11395921 4.80e-01 120 chr2L:7619402-7619522 9.75e-03 67_[+3(1.76e-06)]_45 chr3R:23508434-23508554 6.40e-01 120 chr2R:19153375-19153495 9.01e-01 120 chr3L:776283-776403 8.65e-03 39_[+2(2.72e-05)]_73 chr2L:18466359-18466479 7.86e-03 43_[+1(3.16e-06)]_69 chrX:13568241-13568361 1.01e-01 120 chr3R:29758526-29758646 6.51e-01 120 chr3R:28848059-28848179 9.96e-01 120 chrX:3867148-3867268 7.84e-01 120 chr2R:14969736-14969856 9.26e-01 120 chr2L:16503099-16503219 1.02e-01 120 chr3R:14389336-14389456 1.80e-01 120 chr2R:19616012-19616132 5.92e-04 59_[+2(1.03e-05)]_53 chr3R:14048848-14048968 9.07e-01 120 chr2L:7574393-7574513 4.42e-01 120 chr3L:10928142-10928262 1.04e-01 120 chrX:5897168-5897288 5.75e-05 14_[+2(1.12e-05)]_98 chrX:2365488-2365608 7.49e-01 120 chr2L:15304459-15304579 1.00e+00 120 chrX:17879413-17879533 6.00e-01 120 chr3R:10530684-10530804 1.04e-01 120 chr3L:11373903-11374023 7.39e-03 120 chr3L:1064551-1064671 5.33e-01 120 chr3R:8470689-8470809 1.00e+00 120 chrX:6022201-6022321 3.97e-01 120 chr3R:14498219-14498339 2.64e-04 45_[+1(1.29e-06)]_67 chr3R:24906135-24906255 1.00e+00 120 chr2L:5290016-5290136 8.17e-01 120 chrX:19878873-19878993 8.45e-01 120 chr2L:4348682-4348802 1.13e-01 120 chrX:7537963-7538083 1.02e-04 38_[+2(2.90e-05)]_74 chr3R:27140069-27140189 2.71e-04 34_[+2(2.84e-06)]_78 chr3R:22628046-22628166 9.31e-01 120 chr2L:18517119-18517239 8.94e-02 120 chr2R:10237781-10237901 2.44e-01 120 chrX:739958-740078 1.97e-02 120 chr3R:11614652-11614772 9.45e-01 120 chrX:18272460-18272580 9.36e-01 120 chr2R:10771999-10772119 7.96e-02 120 chrX:2358347-2358467 2.06e-03 1_[+3(3.58e-06)]_111 chr2R:8650607-8650727 2.40e-01 120 chr3R:21733066-21733186 5.29e-01 120 chr2L:9447907-9448027 7.88e-01 120 chr2L:12602279-12602399 3.20e-01 120 chrX:22479447-22479567 1.13e-01 120 chr3L:10562400-10562520 3.96e-02 120 chr3L:9419453-9419573 3.84e-02 120 chr2L:7973884-7974004 2.19e-01 120 chr3L:9551277-9551397 1.84e-02 35_[+4(5.56e-05)]_77 chr3L:11322618-11322738 8.24e-02 58_[+4(1.12e-05)]_54 chr2L:10615929-10616049 9.70e-02 120 chr3L:18198962-18199082 7.84e-01 120 chr2L:18146765-18146885 2.54e-01 120 chr2L:15385512-15385632 2.89e-01 120 chr3L:10697087-10697207 9.36e-01 120 chrX:6059272-6059392 1.03e-01 120 chr2L:2931905-2932025 2.19e-02 120 chr3R:16154400-16154520 6.44e-07 105_[+2(9.46e-07)]_7 chr3R:22324894-22325014 4.43e-01 120 chrX:19145236-19145356 9.92e-01 120 chr3L:531403-531523 7.89e-01 120 chr2L:18352980-18353100 9.95e-01 120 chr3L:2835113-2835233 2.43e-04 12_[+2(2.84e-06)]_100 chr2L:675052-675172 8.25e-02 120 chr2R:15745316-15745436 3.21e-01 120 chr2L:20913062-20913182 7.44e-01 120 chr2L:11222208-11222328 1.00e+00 120 chr2R:18256974-18257094 8.22e-02 120 chr3L:3343364-3343484 9.67e-01 120 chrX:12596552-12596672 3.53e-01 120 chr2R:19985099-19985219 8.95e-01 120 chr2L:3341688-3341808 7.82e-01 120 chr3L:4722020-4722140 8.34e-01 120 chr2R:14975248-14975368 3.89e-04 11_[+5(1.22e-06)]_101 chr2R:6147589-6147709 9.96e-01 120 chr2L:16406657-16406777 4.95e-01 120 chrX:6077115-6077235 5.70e-01 120 chr3R:8029725-8029845 9.08e-01 120 chrX:17542863-17542983 1.00e-01 120 chr3L:818509-818629 8.21e-02 120 chr3R:31505253-31505373 1.67e-05 4_[+4(1.42e-06)]_108 chr2L:5483217-5483337 3.60e-02 120 chrX:1612042-1612162 2.68e-01 120 chrX:10104620-10104740 9.97e-01 120 chrX:19230001-19230121 9.93e-01 120 chr2R:14968031-14968151 7.19e-01 120 chr3R:26900103-26900223 1.10e-05 6_[+3(1.76e-06)]_106 chr3L:20952221-20952341 7.50e-01 120 chr2R:10439090-10439210 4.97e-01 120 chrX:8215719-8215839 3.65e-01 120 chrX:19224985-19225105 9.27e-01 120 chrX:4197610-4197730 9.92e-01 120 chr3L:12442730-12442850 9.35e-01 120 chr2L:13572250-13572370 1.00e+00 120 chr3L:16015916-16016036 9.50e-01 120 chr2L:16590832-16590952 9.99e-01 120 chrX:13278190-13278310 4.12e-02 120 chrX:3411949-3412069 2.47e-01 120 chr2R:14513634-14513754 9.42e-01 120 chr2L:18648363-18648483 1.11e-01 120 chr2R:19903241-19903361 4.29e-01 120 chr3L:12410956-12411076 3.43e-01 120 chr2L:9235623-9235743 7.17e-01 120 chr2L:19364808-19364928 9.83e-01 120 chr3L:19557373-19557493 8.97e-01 120 chrX:7968500-7968620 9.84e-01 120 chr2R:17459057-17459177 9.70e-01 120 chr3R:14847328-14847448 1.80e-05 30_[+5(2.56e-06)]_82 chr2R:10213640-10213760 6.42e-01 120 chr3R:23486902-23487022 6.90e-01 120 chr2R:12733018-12733138 1.02e-04 68_[+5(8.91e-07)]_44 chr2R:10559946-10560066 6.52e-04 30_[+2(2.84e-06)]_82 chr3R:30284105-30284225 5.98e-01 120 chr3L:785843-785963 9.66e-01 120 chr3L:10352227-10352347 8.73e-02 120 chrX:3381148-3381268 4.58e-02 90_[+4(5.56e-05)]_22 chrX:13245875-13245995 6.09e-04 51_[+5(8.88e-05)]_61 chr3R:10588845-10588965 9.77e-02 120 chr2L:488359-488479 1.97e-01 120 chr2L:7879665-7879785 1.19e-01 120 chr3L:3078626-3078746 1.70e-02 88_[+1(9.33e-07)]_24 chrX:7535022-7535142 4.19e-02 120 chr3R:22195819-22195939 3.65e-04 29_[+5(4.35e-06)]_83 chrX:17490025-17490145 5.00e-01 120 chr2R:24163454-24163574 3.12e-01 120 chr3L:1388249-1388369 5.76e-04 22_[+3(1.76e-06)]_90 chr3R:11947228-11947348 8.93e-01 120 chr3L:16211231-16211351 9.60e-01 120 chrX:15642220-15642340 5.61e-01 120 chr3L:1084502-1084622 9.95e-01 120 chr2L:16438059-16438179 9.99e-01 120 chr2R:7147243-7147363 4.67e-01 120 chrX:18834549-18834669 6.48e-01 120 chr2R:18894883-18895003 7.12e-01 120 chr2L:4211366-4211486 9.98e-01 120 chr2L:6472500-6472620 3.68e-01 120 chr2R:21569028-21569148 4.74e-01 120 chr3L:8027767-8027887 5.53e-01 120 chrX:19160035-19160155 8.97e-02 120 chr3R:9230353-9230473 4.96e-06 78_[+2(2.84e-06)]_34 chrX:17562713-17562833 5.46e-01 120 chr3L:18114099-18114219 6.80e-01 120 chrX:13679713-13679833 4.22e-01 120 chr3L:8763284-8763404 1.45e-01 120 chrX:19162367-19162487 3.11e-01 120 chr2R:19849274-19849394 8.74e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************