******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34376.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:22456132-22456252 1.0000 120 chr2R:18618174-18618294 1.0000 120 chrX:10926387-10926507 1.0000 120 chr3L:20777637-20777757 1.0000 120 chrX:509262-509382 1.0000 120 chr2R:18433137-18433257 1.0000 120 chr2L:8157302-8157422 1.0000 120 chr3R:22453403-22453523 1.0000 120 chr3R:15852061-15852181 1.0000 120 chr2L:16445170-16445290 1.0000 120 chr2L:4389524-4389644 1.0000 120 chr2L:7213758-7213878 1.0000 120 chr2L:18955815-18955935 1.0000 120 chr2R:18760144-18760264 1.0000 120 chr2L:5027566-5027686 1.0000 120 chr3R:12715386-12715506 1.0000 120 chr2R:11340135-11340255 1.0000 120 chr2L:13967038-13967158 1.0000 120 chr2R:19502403-19502523 1.0000 120 chr3R:4235093-4235213 1.0000 120 chr3R:12259110-12259230 1.0000 120 chr3L:2530301-2530421 1.0000 120 chr3R:22455398-22455518 1.0000 120 chr3R:15991769-15991889 1.0000 120 chr2R:17756482-17756602 1.0000 120 chr3R:23095441-23095561 1.0000 120 chr2L:5025737-5025857 1.0000 120 chr3L:4231781-4231901 1.0000 120 chr3L:14609478-14609598 1.0000 120 chr3L:9615975-9616095 1.0000 120 chrX:11095405-11095525 1.0000 120 chr3R:26871198-26871318 1.0000 120 chr3L:9074363-9074483 1.0000 120 chr3R:22454492-22454612 1.0000 120 chr2L:4896687-4896807 1.0000 120 chr2L:6423339-6423459 1.0000 120 chr2L:14015276-14015396 1.0000 120 chr2R:24138718-24138838 1.0000 120 chr2R:9411084-9411204 1.0000 120 chr3L:1324963-1325083 1.0000 120 chr2L:19386425-19386545 1.0000 120 chrX:11873260-11873380 1.0000 120 chrX:12682677-12682797 1.0000 120 chr3L:12837341-12837461 1.0000 120 chr2R:13588403-13588523 1.0000 120 chr3R:23177602-23177722 1.0000 120 chr3L:11965041-11965161 1.0000 120 chr2R:14225743-14225863 1.0000 120 chr2R:19501397-19501517 1.0000 120 chr3L:3306620-3306740 1.0000 120 chrX:17845946-17846066 1.0000 120 chr3L:8097212-8097332 1.0000 120 chr3L:7358648-7358768 1.0000 120 chr2R:24975408-24975528 1.0000 120 chr2R:22599144-22599264 1.0000 120 chr2R:24985034-24985154 1.0000 120 chr3L:1854115-1854235 1.0000 120 chr2L:8328834-8328954 1.0000 120 chr2R:8143867-8143987 1.0000 120 chr2R:17054079-17054199 1.0000 120 chr3R:12685397-12685517 1.0000 120 chr2L:8496397-8496517 1.0000 120 chr2R:25188722-25188842 1.0000 120 chr3R:22450208-22450328 1.0000 120 chr3R:9437663-9437783 1.0000 120 chr2R:10883385-10883505 1.0000 120 chr2R:12342878-12342998 1.0000 120 chr2R:11382948-11383068 1.0000 120 chr2L:7789204-7789324 1.0000 120 chr2L:16882954-16883074 1.0000 120 chr3L:12085084-12085204 1.0000 120 chr2L:7814236-7814356 1.0000 120 chr2R:9831205-9831325 1.0000 120 chr3L:20193775-20193895 1.0000 120 chr2R:7710187-7710307 1.0000 120 chr3L:12039184-12039304 1.0000 120 chr2L:5092143-5092263 1.0000 120 chr3L:13019649-13019769 1.0000 120 chr2R:11218795-11218915 1.0000 120 chr2R:7155410-7155530 1.0000 120 chr3R:28603667-28603787 1.0000 120 chr3L:20223623-20223743 1.0000 120 chr2R:12755291-12755411 1.0000 120 chr3R:27954661-27954781 1.0000 120 chr2L:495960-496080 1.0000 120 chr2R:16009170-16009290 1.0000 120 chr2R:10128333-10128453 1.0000 120 chr2R:6202452-6202572 1.0000 120 chr2R:16834479-16834599 1.0000 120 chr3R:30201135-30201255 1.0000 120 chr2L:14012533-14012653 1.0000 120 chr2R:5783561-5783681 1.0000 120 chr2R:18018125-18018245 1.0000 120 chr3R:8521597-8521717 1.0000 120 chr3R:4294836-4294956 1.0000 120 chr3R:13705408-13705528 1.0000 120 chr2L:2039613-2039733 1.0000 120 chr3L:300381-300501 1.0000 120 chr3L:7940659-7940779 1.0000 120 chr2R:15220989-15221109 1.0000 120 chr3L:6216639-6216759 1.0000 120 chr2R:25224949-25225069 1.0000 120 chr2L:12465459-12465579 1.0000 120 chr3R:10877962-10878082 1.0000 120 chr3L:349968-350088 1.0000 120 chr3L:3142655-3142775 1.0000 120 chr3L:12791989-12792109 1.0000 120 chr2L:4388072-4388192 1.0000 120 chr3L:14559071-14559191 1.0000 120 chr3R:5654037-5654157 1.0000 120 chr2R:6247976-6248096 1.0000 120 chrX:18857528-18857648 1.0000 120 chr3L:19156308-19156428 1.0000 120 chrX:13646298-13646418 1.0000 120 chr2L:3445799-3445919 1.0000 120 chr2L:20397157-20397277 1.0000 120 chr3R:21749197-21749317 1.0000 120 chr2L:13141063-13141183 1.0000 120 chr2R:11193014-11193134 1.0000 120 chr3L:2504249-2504369 1.0000 120 chr3R:26570473-26570593 1.0000 120 chr2R:11336624-11336744 1.0000 120 chr3L:3469836-3469956 1.0000 120 chr3L:11966236-11966356 1.0000 120 chr2L:10316013-10316133 1.0000 120 chr3L:1534892-1535012 1.0000 120 chr3L:17005512-17005632 1.0000 120 chr2L:8130139-8130259 1.0000 120 chr2L:3696593-3696713 1.0000 120 chr3L:2809930-2810050 1.0000 120 chr2L:8987623-8987743 1.0000 120 chr3L:8604846-8604966 1.0000 120 chr2L:12055523-12055643 1.0000 120 chr2R:15928516-15928636 1.0000 120 chrX:3442929-3443049 1.0000 120 chr3R:9644081-9644201 1.0000 120 chr2R:6205999-6206119 1.0000 120 chr2L:19389807-19389927 1.0000 120 chr3R:5309404-5309524 1.0000 120 chr3L:7760306-7760426 1.0000 120 chr2R:12166390-12166510 1.0000 120 chr3R:7514596-7514716 1.0000 120 chr2R:24071269-24071389 1.0000 120 chr2R:8084343-8084463 1.0000 120 chr3R:9043772-9043892 1.0000 120 chr2R:17095348-17095468 1.0000 120 chr3R:21757904-21758024 1.0000 120 chr2L:21304136-21304256 1.0000 120 chr2L:8991719-8991839 1.0000 120 chrX:9932416-9932536 1.0000 120 chr3R:26426742-26426862 1.0000 120 chr2L:13841601-13841721 1.0000 120 chr3L:9139691-9139811 1.0000 120 chr3L:21285412-21285532 1.0000 120 chrX:2531442-2531562 1.0000 120 chr2L:8937702-8937822 1.0000 120 chr3L:20366215-20366335 1.0000 120 chr3R:15231871-15231991 1.0000 120 chr3L:876794-876914 1.0000 120 chr3R:29686847-29686967 1.0000 120 chrX:13637006-13637126 1.0000 120 chr2L:14745085-14745205 1.0000 120 chr2R:21831523-21831643 1.0000 120 chrX:15464667-15464787 1.0000 120 chrX:11620639-11620759 1.0000 120 chrX:11718011-11718131 1.0000 120 chrX:12593640-12593760 1.0000 120 chr2L:7791137-7791257 1.0000 120 chr2R:6702234-6702354 1.0000 120 chr2R:18547305-18547425 1.0000 120 chr3L:11290431-11290551 1.0000 120 chr2R:12855553-12855673 1.0000 120 chr3L:140317-140437 1.0000 120 chr3R:23534725-23534845 1.0000 120 chr3R:11637722-11637842 1.0000 120 chr2R:11423582-11423702 1.0000 120 chr3R:15246712-15246832 1.0000 120 chr2L:3461876-3461996 1.0000 120 chr3L:3349877-3349997 1.0000 120 chr3R:8292189-8292309 1.0000 120 chr2L:8933968-8934088 1.0000 120 chr3R:14796462-14796582 1.0000 120 chr2R:9139400-9139520 1.0000 120 chr3R:21749403-21749523 1.0000 120 chr2R:7988604-7988724 1.0000 120 chr2R:6033252-6033372 1.0000 120 chr3L:7344125-7344245 1.0000 120 chr2R:16824003-16824123 1.0000 120 chr2R:21832494-21832614 1.0000 120 chr2L:19097458-19097578 1.0000 120 chr2L:2807786-2807906 1.0000 120 chr3L:2402391-2402511 1.0000 120 chrX:16747589-16747709 1.0000 120 chr2L:8328046-8328166 1.0000 120 chr2R:16668548-16668668 1.0000 120 chr2R:21532154-21532274 1.0000 120 chr3L:16652695-16652815 1.0000 120 chr3R:26259986-26260106 1.0000 120 chr2R:12947173-12947293 1.0000 120 chr3L:1784283-1784403 1.0000 120 chr3R:11126507-11126627 1.0000 120 chr3R:11691877-11691997 1.0000 120 chr3R:10059524-10059644 1.0000 120 chr2R:14873440-14873560 1.0000 120 chr2R:21118368-21118488 1.0000 120 chr2L:19763757-19763877 1.0000 120 chrX:5885086-5885206 1.0000 120 chr3R:16996697-16996817 1.0000 120 chr3R:18291980-18292100 1.0000 120 chr3L:6517070-6517190 1.0000 120 chr3R:24563520-24563640 1.0000 120 chr3R:9646596-9646716 1.0000 120 chr3L:7760507-7760627 1.0000 120 chr2L:9949560-9949680 1.0000 120 chr2R:15529127-15529247 1.0000 120 chr2R:22599358-22599478 1.0000 120 chr3R:24862815-24862935 1.0000 120 chrX:17659208-17659328 1.0000 120 chr2R:9073432-9073552 1.0000 120 chr2L:5720546-5720666 1.0000 120 chr2R:10040540-10040660 1.0000 120 chr3L:16666605-16666725 1.0000 120 chr3L:19495076-19495196 1.0000 120 chr3L:15520100-15520220 1.0000 120 chrX:2199433-2199553 1.0000 120 chrX:1170468-1170588 1.0000 120 chr2L:20074538-20074658 1.0000 120 chr2L:5029296-5029416 1.0000 120 chr2L:6367624-6367744 1.0000 120 chrX:1285444-1285564 1.0000 120 chr3R:17624702-17624822 1.0000 120 chrX:15465620-15465740 1.0000 120 chr2L:16447099-16447219 1.0000 120 chr3R:19792836-19792956 1.0000 120 chr2R:23615523-23615643 1.0000 120 chr3R:16200857-16200977 1.0000 120 chr3R:19785521-19785641 1.0000 120 chr2R:11338837-11338957 1.0000 120 chr3R:12700103-12700223 1.0000 120 chr3L:8787857-8787977 1.0000 120 chr3R:19783505-19783625 1.0000 120 chr2R:8158348-8158468 1.0000 120 chrX:12469308-12469428 1.0000 120 chr2L:10529143-10529263 1.0000 120 chr2L:7240441-7240561 1.0000 120 chrX:5427399-5427519 1.0000 120 chr2R:24642401-24642521 1.0000 120 chr3L:10867055-10867175 1.0000 120 chr2L:9529979-9530099 1.0000 120 chr3L:12828642-12828762 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG34376/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34376.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.215 G 0.215 T 0.286 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.215 G 0.215 T 0.286 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BCTTATCA MEME-1 width = 8 sites = 90 llr = 686 E-value = 4.3e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCTTATCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11:1a::7 pos.-specific C 28::::a: probability G 41:::::2 matrix T 31a9:a:1 bits 2.2 * 2.0 * 1.8 * *** 1.6 ***** Relative 1.3 ***** Entropy 1.1 ****** (11.0 bits) 0.9 ****** 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GCTTATCA consensus T G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10529143-10529263 66 1.88e-05 CGGACCCACG GCTTATCA TCGATTGGCC chr3R:19783505-19783625 96 1.88e-05 CCCGGGCTAG GCTTATCA GTCACCGCAA chr2L:3461876-3461996 1 1.88e-05 . GCTTATCA GTTGGAAAAT chr3L:11290431-11290551 24 1.88e-05 GACTTCTAGG GCTTATCA CTAGCGATAT chr3R:29686847-29686967 37 1.88e-05 GAGTTCAGTT GCTTATCA TCGCTCCAGT chr3L:20366215-20366335 34 1.88e-05 CCATGATACG GCTTATCA ATTTTGGCAA chr3L:19156308-19156428 79 1.88e-05 TAAATCGCGG GCTTATCA GCGTTTTTTG chr3L:12791989-12792109 107 1.88e-05 TACCGTTATT GCTTATCA AATTGT chr2R:18018125-18018245 33 1.88e-05 CAAAGTTACT GCTTATCA GTTTTGGCTA chr2R:8143867-8143987 17 1.88e-05 GTCGAACTCC GCTTATCA ACGACGGTTA chr3R:26871198-26871318 85 1.88e-05 CCCCACCGCC GCTTATCA GGATCGGTCG chr3R:4235093-4235213 22 1.88e-05 ACGAAGCTTT GCTTATCA ATCGTCCCAG chr2L:5720546-5720666 80 3.75e-05 ATTTTCCTAT CCTTATCA TAACAATTCA chr2R:21118368-21118488 96 3.75e-05 TATCACGGAA CCTTATCA ACTCGGGTAC chr2R:6702234-6702354 4 3.75e-05 TCA CCTTATCA GCCCTAAAAA chrX:13637006-13637126 43 3.75e-05 TAATTCCGCG CCTTATCA CGCTGCCTGT chr3R:5654037-5654157 21 3.75e-05 AGAGCGAACG CCTTATCA TCTTAGCTGA chr2R:10128333-10128453 53 3.75e-05 TTGCTGGCGA CCTTATCA GCAAGGTTCG chr2L:16882954-16883074 64 3.75e-05 ACAGCGTTTC CCTTATCA CTGTGAGTGA chr2R:24138718-24138838 56 3.75e-05 CATTCTACAA CCTTATCA GACGCGTTTG chr3R:15991769-15991889 100 3.75e-05 GCCAAGAACA CCTTATCA ACATTTTCGA chr2R:10040540-10040660 53 6.24e-05 TTCGTGTCAT TCTTATCA ATAACGTCCA chr3R:16996697-16996817 95 6.24e-05 CACGAACTAC TCTTATCA GTTGCGGTGA chr2R:16668548-16668668 103 6.24e-05 TTCAGAGATC TCTTATCA CCGGTGCTAT chr3L:2402391-2402511 51 6.24e-05 AACCACGAAA TCTTATCA GACTCGCGGT chr3R:11637722-11637842 6 6.24e-05 TCTAA TCTTATCA CAGGTTTGCA chrX:11718011-11718131 3 6.24e-05 CG TCTTATCA AGAAGCCATC chrX:11620639-11620759 28 6.24e-05 GGCGTTGCGT TCTTATCA CCGGCGTATC chr2L:8937702-8937822 65 6.24e-05 GAGCACCTAG TCTTATCA TCCGTCGAGG chr2R:11382948-11383068 70 6.24e-05 TTCCTTACGG TCTTATCA ATGTGTCTGC chr3L:1854115-1854235 80 6.24e-05 AGGAGCTCGA TCTTATCA AGAACAATAG chr3R:22456132-22456252 46 6.24e-05 TTTTCAGATT TCTTATCA TAGCTGTTTT chr2R:24642401-24642521 94 7.66e-05 CCCCGCCCAC GCTTATCG CCTTTGCAGC chr2R:15529127-15529247 95 7.66e-05 ATTCTGCGTT GCTTATCG CAGACTTTCC chr3L:6517070-6517190 9 7.66e-05 CATCCGCC GCTTATCG CGTTCCAATT chr2R:18547305-18547425 30 7.66e-05 TTTTGGATTG GCTTATCG CAGCCAGACG chr2L:8991719-8991839 67 7.66e-05 TTTTTTTTGG GCTTATCG AAGGCGTGCG chr2R:6205999-6206119 9 7.66e-05 AATTCAGG GCTTATCG CCCAAAGCCT chr2L:8130139-8130259 24 7.66e-05 ATACGAACTG GCTTATCG ACAAACAATT chr2R:10883385-10883505 97 7.66e-05 TACAGTGTGT GCTTATCG CGATTCCCCG chr3L:3306620-3306740 67 7.66e-05 GTCTAATTTG GCTTATCG AAATGCCCAC chr3L:16652695-16652815 23 9.08e-05 AGTTGGCCAA CCTTATCG GTGGCCCGTT chrX:509262-509382 10 9.08e-05 CGATAGCCG CCTTATCG CCCATCCAGT chr3R:19785521-19785641 68 1.29e-04 GATATCGACG GCTTATCT CCAGTTGATT chr2R:7988604-7988724 77 1.29e-04 TTTCCCGGCA TCTTATCG CACGGAAATT chr2L:13141063-13141183 75 1.29e-04 CAACTGGCTG GCTTATCT CATTGGAAGC chr3R:28603667-28603787 105 1.29e-04 ATAACTAACC GCTTATCT ATCCCGTA chr3L:12085084-12085204 8 1.29e-04 TAAATCA GCTTATCT GCAGTCGAAA chr2R:9411084-9411204 42 1.29e-04 CGCGGCATTA TCTTATCG CAAGCGTTCT chr2R:11340135-11340255 27 1.29e-04 CCATTCCATG GCTTATCT AACGGCCGAT chr2L:9529979-9530099 72 1.53e-04 CTGTGGACAT ACTTATCA ACCTTAAGAA chrX:12469308-12469428 39 1.53e-04 TTGTTAGTGA ACTTATCA GCACGCCGCA chr3L:7760507-7760627 85 1.53e-04 GTTTTATTGT ACTTATCA GTGGAGAAAC chr3R:9646596-9646716 44 1.53e-04 AAGTTTTCAC ACTTATCA GTGAAGAGCT chr3L:7344125-7344245 55 1.53e-04 AGTTTGCTGA ACTTATCA CACAAATTGC chr2R:19501397-19501517 79 1.53e-04 ATTTTGTGCC ACTTATCA GTTGCAGTTG chr2L:7789204-7789324 72 1.72e-04 TGTTTAGTCT GGTTATCA TTTAATTGAT chr2L:6423339-6423459 70 1.72e-04 ATATGAGTCG GGTTATCA TCACGGGTAC chr2R:11423582-11423702 56 1.91e-04 GAAAATAAAA CCTTATCT CTGACGTTTA chr3R:16200857-16200977 29 2.41e-04 ACTCATAGCG GATTATCA GAGGCCACCA chr3R:21749403-21749523 19 2.41e-04 ATGGGCCTTT TCTTATCT CAAGAGCGAA chr2R:12166390-12166510 22 2.41e-04 ATAAAATCTC TCTTATCT GCGAAAGGAA chr2L:10316013-10316133 43 2.41e-04 GATAAGGGCT TCTTATCT GAAAGATTGT chr3R:21749197-21749317 9 2.41e-04 CGAAATTC GATTATCA AGTGGATATT chr3R:10877962-10878082 112 2.41e-04 GAATACACAC TCTTATCT A chr2R:17756482-17756602 96 2.41e-04 ACAGCACGTT TCTTATCT GGGTTCGGAG chr2R:9139400-9139520 89 2.78e-04 TTCTCGACCA CGTTATCA GCGATCTGCT chr3L:20193775-20193895 96 2.78e-04 CCAATTATGT CGTTATCA TTTGAAGACT chr2L:4389524-4389644 66 2.78e-04 TAATGGCGAG CGTTATCA GCGAGGCTCG chr2L:5029296-5029416 18 3.47e-04 GCAGCGACGG ACTTATCG CCAAGTTTCA chr3R:14796462-14796582 27 3.47e-04 TCAGATATGC GTTTATCA TAGCACTGCG chr3L:21285412-21285532 44 3.47e-04 TGGCTGGAAC GTTTATCA GGTCGTATGT chr2L:14012533-14012653 73 3.47e-04 GTGTACCCGT GTTTATCA GATCATAAAC chr3R:26259986-26260106 90 3.72e-04 AAAGGTTTTG CATTATCA TAACGAGATT chr2L:19386425-19386545 62 3.72e-04 CGTCTGCCGA CATTATCA CATTTGCGAT chr3R:24563520-24563640 87 4.19e-04 TTATTGTTAT GGTTATCG CCGATTTTAA chr3R:7514596-7514716 29 4.19e-04 gatttgattt ggttATCG CCAATGTCGA chr3R:9437663-9437783 6 4.19e-04 CTTTA TATTATCA GTTGATTCTC chr2L:8496397-8496517 53 4.19e-04 TAATCTGGCA TATTATCA TTTCAGGTGT chr2R:9073432-9073552 66 4.38e-04 TTTAAATGCT GATTATCG CTTGATAAAG chr3R:24862815-24862935 84 4.38e-04 AAGCATCAAC GATTATCG CATAGGCGGA chr3R:8292189-8292309 43 4.56e-04 GCCGGATAAG CCTAATCA ACCTGCGCCA chr3L:9139691-9139811 24 5.06e-04 AAAGCCATTT TCTAATCA ATGTTTGCTC chr3R:26426742-26426862 66 5.06e-04 TTCTTCCAAC CTTTATCA GCACTTTATG chr2R:12755291-12755411 65 5.06e-04 GTGAAACTAT CTTTATCA GTTAGCAAAA chr3L:7358648-7358768 13 5.06e-04 tctagcctaa tctaatca cagtctaaGT chr2L:13967038-13967158 48 5.06e-04 TTGTCCCCCT TCTAATCA GCACCTCGCC chr2R:18433137-18433257 8 5.06e-04 AACAGTT TCTAATCA GCATTGGGTT chr2R:16824003-16824123 9 6.49e-04 GGCGTCAG TGTTATCG AAACCCAAAT chr3L:4231781-4231901 52 8.08e-04 TTTTGAAACC GCATATCA AGTTTCTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10529143-10529263 1.9e-05 65_[+1]_47 chr3R:19783505-19783625 1.9e-05 95_[+1]_17 chr2L:3461876-3461996 1.9e-05 [+1]_112 chr3L:11290431-11290551 1.9e-05 23_[+1]_89 chr3R:29686847-29686967 1.9e-05 36_[+1]_76 chr3L:20366215-20366335 1.9e-05 33_[+1]_79 chr3L:19156308-19156428 1.9e-05 78_[+1]_34 chr3L:12791989-12792109 1.9e-05 106_[+1]_6 chr2R:18018125-18018245 1.9e-05 32_[+1]_80 chr2R:8143867-8143987 1.9e-05 16_[+1]_96 chr3R:26871198-26871318 1.9e-05 84_[+1]_28 chr3R:4235093-4235213 1.9e-05 21_[+1]_91 chr2L:5720546-5720666 3.8e-05 79_[+1]_33 chr2R:21118368-21118488 3.8e-05 95_[+1]_17 chr2R:6702234-6702354 3.8e-05 3_[+1]_109 chrX:13637006-13637126 3.8e-05 42_[+1]_70 chr3R:5654037-5654157 3.8e-05 20_[+1]_92 chr2R:10128333-10128453 3.8e-05 52_[+1]_60 chr2L:16882954-16883074 3.8e-05 63_[+1]_49 chr2R:24138718-24138838 3.8e-05 55_[+1]_57 chr3R:15991769-15991889 3.8e-05 99_[+1]_13 chr2R:10040540-10040660 6.2e-05 52_[+1]_60 chr3R:16996697-16996817 6.2e-05 94_[+1]_18 chr2R:16668548-16668668 6.2e-05 102_[+1]_10 chr3L:2402391-2402511 6.2e-05 50_[+1]_62 chr3R:11637722-11637842 6.2e-05 5_[+1]_107 chrX:11718011-11718131 6.2e-05 2_[+1]_110 chrX:11620639-11620759 6.2e-05 27_[+1]_85 chr2L:8937702-8937822 6.2e-05 64_[+1]_48 chr2R:11382948-11383068 6.2e-05 69_[+1]_43 chr3L:1854115-1854235 6.2e-05 79_[+1]_33 chr3R:22456132-22456252 6.2e-05 45_[+1]_67 chr2R:24642401-24642521 7.7e-05 93_[+1]_19 chr2R:15529127-15529247 7.7e-05 94_[+1]_18 chr3L:6517070-6517190 7.7e-05 8_[+1]_104 chr2R:18547305-18547425 7.7e-05 29_[+1]_83 chr2L:8991719-8991839 7.7e-05 66_[+1]_46 chr2R:6205999-6206119 7.7e-05 8_[+1]_104 chr2L:8130139-8130259 7.7e-05 23_[+1]_89 chr2R:10883385-10883505 7.7e-05 96_[+1]_16 chr3L:3306620-3306740 7.7e-05 66_[+1]_46 chr3L:16652695-16652815 9.1e-05 22_[+1]_90 chrX:509262-509382 9.1e-05 9_[+1]_103 chr3R:19785521-19785641 0.00013 67_[+1]_45 chr2R:7988604-7988724 0.00013 76_[+1]_36 chr2L:13141063-13141183 0.00013 74_[+1]_38 chr3R:28603667-28603787 0.00013 104_[+1]_8 chr3L:12085084-12085204 0.00013 7_[+1]_105 chr2R:9411084-9411204 0.00013 41_[+1]_71 chr2R:11340135-11340255 0.00013 26_[+1]_86 chr2L:9529979-9530099 0.00015 71_[+1]_41 chrX:12469308-12469428 0.00015 38_[+1]_74 chr3L:7760507-7760627 0.00015 84_[+1]_28 chr3R:9646596-9646716 0.00015 43_[+1]_69 chr3L:7344125-7344245 0.00015 54_[+1]_58 chr2R:19501397-19501517 0.00015 78_[+1]_34 chr2L:7789204-7789324 0.00017 71_[+1]_41 chr2L:6423339-6423459 0.00017 69_[+1]_43 chr2R:11423582-11423702 0.00019 55_[+1]_57 chr3R:16200857-16200977 0.00024 28_[+1]_84 chr3R:21749403-21749523 0.00024 18_[+1]_94 chr2R:12166390-12166510 0.00024 21_[+1]_91 chr2L:10316013-10316133 0.00024 42_[+1]_70 chr3R:21749197-21749317 0.00024 8_[+1]_104 chr3R:10877962-10878082 0.00024 111_[+1]_1 chr2R:17756482-17756602 0.00024 95_[+1]_17 chr2R:9139400-9139520 0.00028 88_[+1]_24 chr3L:20193775-20193895 0.00028 95_[+1]_17 chr2L:4389524-4389644 0.00028 65_[+1]_47 chr2L:5029296-5029416 0.00035 17_[+1]_95 chr3R:14796462-14796582 0.00035 26_[+1]_86 chr3L:21285412-21285532 0.00035 43_[+1]_69 chr2L:14012533-14012653 0.00035 72_[+1]_40 chr3R:26259986-26260106 0.00037 89_[+1]_23 chr2L:19386425-19386545 0.00037 61_[+1]_51 chr3R:24563520-24563640 0.00042 86_[+1]_26 chr3R:7514596-7514716 0.00042 28_[+1]_84 chr3R:9437663-9437783 0.00042 5_[+1]_107 chr2L:8496397-8496517 0.00042 52_[+1]_60 chr2R:9073432-9073552 0.00044 65_[+1]_47 chr3R:24862815-24862935 0.00044 83_[+1]_29 chr3R:8292189-8292309 0.00046 42_[+1]_70 chr3L:9139691-9139811 0.00051 23_[+1]_89 chr3R:26426742-26426862 0.00051 65_[+1]_47 chr2R:12755291-12755411 0.00051 64_[+1]_48 chr3L:7358648-7358768 0.00051 12_[+1]_100 chr2L:13967038-13967158 0.00051 47_[+1]_65 chr2R:18433137-18433257 0.00051 7_[+1]_105 chr2R:16824003-16824123 0.00065 8_[+1]_104 chr3L:4231781-4231901 0.00081 51_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCTTATCA width=8 seqs=90 chr2L:10529143-10529263 ( 66) GCTTATCA 1 chr3R:19783505-19783625 ( 96) GCTTATCA 1 chr2L:3461876-3461996 ( 1) GCTTATCA 1 chr3L:11290431-11290551 ( 24) GCTTATCA 1 chr3R:29686847-29686967 ( 37) GCTTATCA 1 chr3L:20366215-20366335 ( 34) GCTTATCA 1 chr3L:19156308-19156428 ( 79) GCTTATCA 1 chr3L:12791989-12792109 ( 107) GCTTATCA 1 chr2R:18018125-18018245 ( 33) GCTTATCA 1 chr2R:8143867-8143987 ( 17) GCTTATCA 1 chr3R:26871198-26871318 ( 85) GCTTATCA 1 chr3R:4235093-4235213 ( 22) GCTTATCA 1 chr2L:5720546-5720666 ( 80) CCTTATCA 1 chr2R:21118368-21118488 ( 96) CCTTATCA 1 chr2R:6702234-6702354 ( 4) CCTTATCA 1 chrX:13637006-13637126 ( 43) CCTTATCA 1 chr3R:5654037-5654157 ( 21) CCTTATCA 1 chr2R:10128333-10128453 ( 53) CCTTATCA 1 chr2L:16882954-16883074 ( 64) CCTTATCA 1 chr2R:24138718-24138838 ( 56) CCTTATCA 1 chr3R:15991769-15991889 ( 100) CCTTATCA 1 chr2R:10040540-10040660 ( 53) TCTTATCA 1 chr3R:16996697-16996817 ( 95) TCTTATCA 1 chr2R:16668548-16668668 ( 103) TCTTATCA 1 chr3L:2402391-2402511 ( 51) TCTTATCA 1 chr3R:11637722-11637842 ( 6) TCTTATCA 1 chrX:11718011-11718131 ( 3) TCTTATCA 1 chrX:11620639-11620759 ( 28) TCTTATCA 1 chr2L:8937702-8937822 ( 65) TCTTATCA 1 chr2R:11382948-11383068 ( 70) TCTTATCA 1 chr3L:1854115-1854235 ( 80) TCTTATCA 1 chr3R:22456132-22456252 ( 46) TCTTATCA 1 chr2R:24642401-24642521 ( 94) GCTTATCG 1 chr2R:15529127-15529247 ( 95) GCTTATCG 1 chr3L:6517070-6517190 ( 9) GCTTATCG 1 chr2R:18547305-18547425 ( 30) GCTTATCG 1 chr2L:8991719-8991839 ( 67) GCTTATCG 1 chr2R:6205999-6206119 ( 9) GCTTATCG 1 chr2L:8130139-8130259 ( 24) GCTTATCG 1 chr2R:10883385-10883505 ( 97) GCTTATCG 1 chr3L:3306620-3306740 ( 67) GCTTATCG 1 chr3L:16652695-16652815 ( 23) CCTTATCG 1 chrX:509262-509382 ( 10) CCTTATCG 1 chr3R:19785521-19785641 ( 68) GCTTATCT 1 chr2R:7988604-7988724 ( 77) TCTTATCG 1 chr2L:13141063-13141183 ( 75) GCTTATCT 1 chr3R:28603667-28603787 ( 105) GCTTATCT 1 chr3L:12085084-12085204 ( 8) GCTTATCT 1 chr2R:9411084-9411204 ( 42) TCTTATCG 1 chr2R:11340135-11340255 ( 27) GCTTATCT 1 chr2L:9529979-9530099 ( 72) ACTTATCA 1 chrX:12469308-12469428 ( 39) ACTTATCA 1 chr3L:7760507-7760627 ( 85) ACTTATCA 1 chr3R:9646596-9646716 ( 44) ACTTATCA 1 chr3L:7344125-7344245 ( 55) ACTTATCA 1 chr2R:19501397-19501517 ( 79) ACTTATCA 1 chr2L:7789204-7789324 ( 72) GGTTATCA 1 chr2L:6423339-6423459 ( 70) GGTTATCA 1 chr2R:11423582-11423702 ( 56) CCTTATCT 1 chr3R:16200857-16200977 ( 29) GATTATCA 1 chr3R:21749403-21749523 ( 19) TCTTATCT 1 chr2R:12166390-12166510 ( 22) TCTTATCT 1 chr2L:10316013-10316133 ( 43) TCTTATCT 1 chr3R:21749197-21749317 ( 9) GATTATCA 1 chr3R:10877962-10878082 ( 112) TCTTATCT 1 chr2R:17756482-17756602 ( 96) TCTTATCT 1 chr2R:9139400-9139520 ( 89) CGTTATCA 1 chr3L:20193775-20193895 ( 96) CGTTATCA 1 chr2L:4389524-4389644 ( 66) CGTTATCA 1 chr2L:5029296-5029416 ( 18) ACTTATCG 1 chr3R:14796462-14796582 ( 27) GTTTATCA 1 chr3L:21285412-21285532 ( 44) GTTTATCA 1 chr2L:14012533-14012653 ( 73) GTTTATCA 1 chr3R:26259986-26260106 ( 90) CATTATCA 1 chr2L:19386425-19386545 ( 62) CATTATCA 1 chr3R:24563520-24563640 ( 87) GGTTATCG 1 chr3R:7514596-7514716 ( 29) GGTTATCG 1 chr3R:9437663-9437783 ( 6) TATTATCA 1 chr2L:8496397-8496517 ( 53) TATTATCA 1 chr2R:9073432-9073552 ( 66) GATTATCG 1 chr3R:24862815-24862935 ( 84) GATTATCG 1 chr3R:8292189-8292309 ( 43) CCTAATCA 1 chr3L:9139691-9139811 ( 24) TCTAATCA 1 chr3R:26426742-26426862 ( 66) CTTTATCA 1 chr2R:12755291-12755411 ( 65) CTTTATCA 1 chr3L:7358648-7358768 ( 13) TCTAATCA 1 chr2L:13967038-13967158 ( 48) TCTAATCA 1 chr2R:18433137-18433257 ( 8) TCTAATCA 1 chr2R:16824003-16824123 ( 9) TGTTATCG 1 chr3L:4231781-4231901 ( 52) GCATATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.66972 E= 4.3e-023 -187 5 98 -4 -168 183 -127 -236 -467 -1314 -1314 179 -235 -1314 -1314 172 182 -1314 -1314 -1314 -1314 -1314 -1314 181 -1314 221 -1314 -1314 123 -1314 -2 -123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 4.3e-023 0.077778 0.222222 0.422222 0.277778 0.088889 0.766667 0.088889 0.055556 0.011111 0.000000 0.000000 0.988889 0.055556 0.000000 0.000000 0.944444 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.211111 0.122222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCTTATCA MEME-1 regular expression -------------------------------------------------------------------------------- [GTC]CTTATC[AG] -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF STGATAAG MEME-2 width = 8 sites = 77 llr = 596 E-value = 4.4e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGATAAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11:a:aa2 pos.-specific C 53:::::1 probability G 2:a::::6 matrix T 26::a::: bits 2.2 * 2.0 * 1.8 ***** 1.6 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.2 bits) 0.9 ***** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGATAAG consensus GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGATAAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19792836-19792956 66 1.86e-05 GCCACAGCAG CTGATAAG CCCGGAAGTG chr2L:6367624-6367744 65 1.86e-05 ATTTAAATCG CTGATAAG CTAACCAAGC chrX:16747589-16747709 45 1.86e-05 TTCATTCAGC CTGATAAG TTTTACTTTT chr3R:15246712-15246832 90 1.86e-05 ATTGGAGTAG CTGATAAG GAGAGATAAG chr3R:29686847-29686967 94 1.86e-05 TCCCCGCCAG CTGATAAG TCTGGGATGA chr3L:21285412-21285532 75 1.86e-05 ATTATCGCTA CTGATAAG AGAGCCCCCT chr2L:8987623-8987743 108 1.86e-05 TGTTGGCTGT CTGATAAG GTCTA chr3L:2809930-2810050 100 1.86e-05 AATTTCGGCA CTGATAAG CGTTCTCTAT chr3R:5654037-5654157 5 1.86e-05 CTGG CTGATAAG AGCGAACGCC chr2L:12465459-12465579 12 1.86e-05 AAAAGGCGAA CTGATAAG GAGACGCATA chr2R:12342878-12342998 96 1.86e-05 AAAAAACCAA CTGATAAG CGGAGTGAGT chrX:17845946-17846066 64 1.86e-05 CACGGCCTTG CTGATAAG CCTTGGCTCA chr2L:14015276-14015396 16 1.86e-05 GCGACTGCGC CTGATAAG TTATTATAGC chr3L:9615975-9616095 98 1.86e-05 AGCCCAACGG CTGATAAG ACAGACCATT chr2L:5025737-5025857 94 1.86e-05 CAGTCGCAGC CTGATAAG ACCAGCCGAA chr3R:15852061-15852181 37 1.86e-05 ACTGAACCGG CTGATAAG ACGCGCCGAG chr2L:8157302-8157422 57 1.86e-05 GGGTTTCGGA CTGATAAG GGCCCGTGAT chr2R:11218795-11218915 108 3.26e-05 AAAACGCTGG CCGATAAG ATATA chr3R:12700103-12700223 102 5.12e-05 TCCCCGCAAC GTGATAAG ATTCGTGGCC chr2R:6033252-6033372 95 5.12e-05 ACGTTCTCCA GTGATAAG CGCGCCGATA chr2R:17095348-17095468 59 5.12e-05 ATATGCGTGA GTGATAAG GATATATTAC chr2R:19501397-19501517 1 5.12e-05 . GTGATAAG CGGGAGACAG chr2R:24642401-24642521 24 9.00e-05 ATTTGAATTG TTGATAAG ATAGCACGGC chr2R:23615523-23615643 113 9.00e-05 CGCGCCCTTT TTGATAAG chr2L:20074538-20074658 58 9.00e-05 GAATATGGTT TTGATAAG CGAGCTTGTC chr3L:19495076-19495196 59 9.00e-05 AGCCCTCGTG TTGATAAG AAGGCGCCCC chr3R:8292189-8292309 26 9.00e-05 CGTAATATTG GCGATAAG CCGGATAAGC chr2R:18547305-18547425 78 9.00e-05 AAGGTCACGA TTGATAAG CCCCGATCCA chrX:12593640-12593760 110 9.00e-05 ACTTGCGGAA GCGATAAG AAG chr3L:2504249-2504369 70 9.00e-05 ATTCATCACT GCGATAAG GGATTTGCCA chr3R:8521597-8521717 5 9.00e-05 GGGT GCGATAAG CATAAGTTTA chr3L:12085084-12085204 96 9.00e-05 ATCGCACGAG GCGATAAG CTAGGGTCAT chrX:11873260-11873380 11 9.00e-05 ATAAGACCAG GCGATAAG TGGAGAGCCC chrX:10926387-10926507 30 9.00e-05 TTTTTCTCGG GCGATAAG CCCCAGATTT chr2R:6702234-6702354 65 1.15e-04 AGAGAGGCAG CTGATAAA CAGCTTTGAG chr3L:12791989-12792109 55 1.15e-04 TAATCTGGTT CTGATAAA AATAATAACA chr2R:17756482-17756602 14 1.15e-04 GTTCAGCATC CTGATAAA CCTGCTGTGC chr3R:14796462-14796582 75 1.33e-04 CCGCTAAAAT CTGATAAC GACAGCATGG chr2R:8084343-8084463 48 1.33e-04 TCAGAGAGTG CTGATAAC GCAACCCCCA chr3L:7760306-7760426 37 1.33e-04 ACACTGGGCA CTGATAAC CCCGCAGCCG chr2R:16009170-16009290 73 1.33e-04 ACCTTAATCG CTGATAAC GCCAGCTCCG chr3R:23177602-23177722 112 1.33e-04 TGGATACTCG CTGATAAC C chrX:15465620-15465740 48 1.52e-04 CGCAGCTCGT TCGATAAG ATAAACAGCC chr3R:11691877-11691997 20 1.52e-04 TACACAAGAA TCGATAAG TGCGTTGATA chr3R:15231871-15231991 32 1.52e-04 GTATGGGGTC TCGATAAG CGTTATTTTT chr2R:24071269-24071389 93 1.52e-04 CCTACAGGCA TCGATAAG TTTCAACCGC chr2L:14012533-14012653 111 1.52e-04 CTTGTGTCGT TCGATAAG AG chr3R:18291980-18292100 46 1.70e-04 TTTACAATGC CAGATAAG ATGTTAGTTA chr2R:12947173-12947293 40 1.70e-04 TTTAGCAAGT CAGATAAG CCGAATTGTG chr2L:8328046-8328166 16 1.70e-04 AGAAGAGAGA CAGATAAG ACGAATCCAC chr3L:3142655-3142775 82 1.70e-04 CTTGCGTCCG CAGATAAG GCCACTTATA chr2R:21831523-21831643 48 1.89e-04 AGCTATATGG CCGATAAA GCTTCGTTAT chr3L:300381-300501 85 1.89e-04 AAAACAAAAC CCGATAAA AATGTCAACC chr2R:15529127-15529247 76 2.46e-04 TATCAGCCCA GTGATAAC GATTCTGCGT chr2R:24975408-24975528 42 2.46e-04 GGAAATAACG GTGATAAC GGCGGACCTC chr3R:21749403-21749523 102 2.71e-04 ATCAGCACAT ATGATAAG TACACGAGAA chr2R:7710187-7710307 43 2.71e-04 GTTGTTGGCA ATGATAAG ATCATATCAT chr2R:15220989-15221109 27 2.89e-04 GGTAATGCCC GAGATAAG CACTGAAGTG chr2L:16445170-16445290 59 2.89e-04 GCAGAACAGT GAGATAAG CAAAAATACA chr2R:9073432-9073552 75 3.40e-04 TGATTATCGC TTGATAAA GGCTAAAAAT chr2L:8933968-8934088 78 3.40e-04 GCAGAAAAAA TTGATAAA ATAAAACTCG chr3L:3349877-3349997 51 3.40e-04 ATCAGCTCGT GCGATAAA GGGAATTCAC chrX:15464667-15464787 35 3.40e-04 ATCAAATTGC TTGATAAA ACCGAAACCC chr3L:7940659-7940779 44 3.40e-04 TTCAAAACAG TTGATAAA TGGCAATTGT chrX:12682677-12682797 102 3.40e-04 TATGCGTTCT GCGATAAA ACACTGATTT chr3L:1324963-1325083 45 3.40e-04 TATATTATCG TTGATAAA TGTGCCGACT chr2R:9411084-9411204 69 3.40e-04 TACAAGAAGT GCGATAAA ATAGTAAGTA chr2R:8158348-8158468 78 3.79e-04 CCAATCCAAA TTGATAAC CCAGAACGCC chr3R:4294836-4294956 84 3.79e-04 AACACGCTAG GCGATAAC GAGCCAAGCT chr2L:9949560-9949680 14 3.98e-04 CACCAAGCAA ACGATAAG ATTGCGATTT chr2R:25224949-25225069 57 3.98e-04 AAAGTCATTA ACGATAAG GCCCGGATCT chr3L:9139691-9139811 59 4.72e-04 CAATTACATT CTGATAAT TTTTATGGCG chr3L:3469836-3469956 98 4.72e-04 TTACAATTGA CTGATAAT AATGCAACAT chr3L:13019649-13019769 34 4.72e-04 TGTTGCTGAA CTGATAAT CTAATCTTCT chr3R:24563520-24563640 4 5.15e-04 AAA CAGATAAA CGTAATCTCT chr2R:13588403-13588523 53 5.15e-04 TTCCACATGC CAGATAAA CCTGCTGAGT chr3R:22456132-22456252 94 6.58e-04 GAGCGTTTCG ATGATAAC ATCTCCACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGATAAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19792836-19792956 1.9e-05 65_[+2]_47 chr2L:6367624-6367744 1.9e-05 64_[+2]_48 chrX:16747589-16747709 1.9e-05 44_[+2]_68 chr3R:15246712-15246832 1.9e-05 89_[+2]_23 chr3R:29686847-29686967 1.9e-05 93_[+2]_19 chr3L:21285412-21285532 1.9e-05 74_[+2]_38 chr2L:8987623-8987743 1.9e-05 107_[+2]_5 chr3L:2809930-2810050 1.9e-05 99_[+2]_13 chr3R:5654037-5654157 1.9e-05 4_[+2]_108 chr2L:12465459-12465579 1.9e-05 11_[+2]_101 chr2R:12342878-12342998 1.9e-05 95_[+2]_17 chrX:17845946-17846066 1.9e-05 63_[+2]_49 chr2L:14015276-14015396 1.9e-05 15_[+2]_97 chr3L:9615975-9616095 1.9e-05 97_[+2]_15 chr2L:5025737-5025857 1.9e-05 93_[+2]_19 chr3R:15852061-15852181 1.9e-05 36_[+2]_76 chr2L:8157302-8157422 1.9e-05 56_[+2]_56 chr2R:11218795-11218915 3.3e-05 107_[+2]_5 chr3R:12700103-12700223 5.1e-05 101_[+2]_11 chr2R:6033252-6033372 5.1e-05 94_[+2]_18 chr2R:17095348-17095468 5.1e-05 58_[+2]_54 chr2R:19501397-19501517 5.1e-05 [+2]_112 chr2R:24642401-24642521 9e-05 23_[+2]_89 chr2R:23615523-23615643 9e-05 112_[+2] chr2L:20074538-20074658 9e-05 57_[+2]_55 chr3L:19495076-19495196 9e-05 58_[+2]_54 chr3R:8292189-8292309 9e-05 25_[+2]_87 chr2R:18547305-18547425 9e-05 77_[+2]_35 chrX:12593640-12593760 9e-05 109_[+2]_3 chr3L:2504249-2504369 9e-05 69_[+2]_43 chr3R:8521597-8521717 9e-05 4_[+2]_108 chr3L:12085084-12085204 9e-05 95_[+2]_17 chrX:11873260-11873380 9e-05 10_[+2]_102 chrX:10926387-10926507 9e-05 29_[+2]_83 chr2R:6702234-6702354 0.00011 64_[+2]_48 chr3L:12791989-12792109 0.00011 54_[+2]_58 chr2R:17756482-17756602 0.00011 13_[+2]_99 chr3R:14796462-14796582 0.00013 74_[+2]_38 chr2R:8084343-8084463 0.00013 47_[+2]_65 chr3L:7760306-7760426 0.00013 36_[+2]_76 chr2R:16009170-16009290 0.00013 72_[+2]_40 chr3R:23177602-23177722 0.00013 111_[+2]_1 chrX:15465620-15465740 0.00015 47_[+2]_65 chr3R:11691877-11691997 0.00015 19_[+2]_93 chr3R:15231871-15231991 0.00015 31_[+2]_81 chr2R:24071269-24071389 0.00015 92_[+2]_20 chr2L:14012533-14012653 0.00015 110_[+2]_2 chr3R:18291980-18292100 0.00017 45_[+2]_67 chr2R:12947173-12947293 0.00017 39_[+2]_73 chr2L:8328046-8328166 0.00017 15_[+2]_97 chr3L:3142655-3142775 0.00017 81_[+2]_31 chr2R:21831523-21831643 0.00019 47_[+2]_65 chr3L:300381-300501 0.00019 84_[+2]_28 chr2R:15529127-15529247 0.00025 75_[+2]_37 chr2R:24975408-24975528 0.00025 41_[+2]_71 chr3R:21749403-21749523 0.00027 101_[+2]_11 chr2R:7710187-7710307 0.00027 42_[+2]_70 chr2R:15220989-15221109 0.00029 26_[+2]_86 chr2L:16445170-16445290 0.00029 58_[+2]_54 chr2R:9073432-9073552 0.00034 74_[+2]_38 chr2L:8933968-8934088 0.00034 77_[+2]_35 chr3L:3349877-3349997 0.00034 50_[+2]_62 chrX:15464667-15464787 0.00034 34_[+2]_78 chr3L:7940659-7940779 0.00034 43_[+2]_69 chrX:12682677-12682797 0.00034 101_[+2]_11 chr3L:1324963-1325083 0.00034 44_[+2]_68 chr2R:9411084-9411204 0.00034 68_[+2]_44 chr2R:8158348-8158468 0.00038 77_[+2]_35 chr3R:4294836-4294956 0.00038 83_[+2]_29 chr2L:9949560-9949680 0.0004 13_[+2]_99 chr2R:25224949-25225069 0.0004 56_[+2]_56 chr3L:9139691-9139811 0.00047 58_[+2]_54 chr3L:3469836-3469956 0.00047 97_[+2]_15 chr3L:13019649-13019769 0.00047 33_[+2]_79 chr3R:24563520-24563640 0.00051 3_[+2]_109 chr2R:13588403-13588523 0.00051 52_[+2]_60 chr3R:22456132-22456252 0.00066 93_[+2]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGATAAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGATAAG width=8 seqs=77 chr3R:19792836-19792956 ( 66) CTGATAAG 1 chr2L:6367624-6367744 ( 65) CTGATAAG 1 chrX:16747589-16747709 ( 45) CTGATAAG 1 chr3R:15246712-15246832 ( 90) CTGATAAG 1 chr3R:29686847-29686967 ( 94) CTGATAAG 1 chr3L:21285412-21285532 ( 75) CTGATAAG 1 chr2L:8987623-8987743 ( 108) CTGATAAG 1 chr3L:2809930-2810050 ( 100) CTGATAAG 1 chr3R:5654037-5654157 ( 5) CTGATAAG 1 chr2L:12465459-12465579 ( 12) CTGATAAG 1 chr2R:12342878-12342998 ( 96) CTGATAAG 1 chrX:17845946-17846066 ( 64) CTGATAAG 1 chr2L:14015276-14015396 ( 16) CTGATAAG 1 chr3L:9615975-9616095 ( 98) CTGATAAG 1 chr2L:5025737-5025857 ( 94) CTGATAAG 1 chr3R:15852061-15852181 ( 37) CTGATAAG 1 chr2L:8157302-8157422 ( 57) CTGATAAG 1 chr2R:11218795-11218915 ( 108) CCGATAAG 1 chr3R:12700103-12700223 ( 102) GTGATAAG 1 chr2R:6033252-6033372 ( 95) GTGATAAG 1 chr2R:17095348-17095468 ( 59) GTGATAAG 1 chr2R:19501397-19501517 ( 1) GTGATAAG 1 chr2R:24642401-24642521 ( 24) TTGATAAG 1 chr2R:23615523-23615643 ( 113) TTGATAAG 1 chr2L:20074538-20074658 ( 58) TTGATAAG 1 chr3L:19495076-19495196 ( 59) TTGATAAG 1 chr3R:8292189-8292309 ( 26) GCGATAAG 1 chr2R:18547305-18547425 ( 78) TTGATAAG 1 chrX:12593640-12593760 ( 110) GCGATAAG 1 chr3L:2504249-2504369 ( 70) GCGATAAG 1 chr3R:8521597-8521717 ( 5) GCGATAAG 1 chr3L:12085084-12085204 ( 96) GCGATAAG 1 chrX:11873260-11873380 ( 11) GCGATAAG 1 chrX:10926387-10926507 ( 30) GCGATAAG 1 chr2R:6702234-6702354 ( 65) CTGATAAA 1 chr3L:12791989-12792109 ( 55) CTGATAAA 1 chr2R:17756482-17756602 ( 14) CTGATAAA 1 chr3R:14796462-14796582 ( 75) CTGATAAC 1 chr2R:8084343-8084463 ( 48) CTGATAAC 1 chr3L:7760306-7760426 ( 37) CTGATAAC 1 chr2R:16009170-16009290 ( 73) CTGATAAC 1 chr3R:23177602-23177722 ( 112) CTGATAAC 1 chrX:15465620-15465740 ( 48) TCGATAAG 1 chr3R:11691877-11691997 ( 20) TCGATAAG 1 chr3R:15231871-15231991 ( 32) TCGATAAG 1 chr2R:24071269-24071389 ( 93) TCGATAAG 1 chr2L:14012533-14012653 ( 111) TCGATAAG 1 chr3R:18291980-18292100 ( 46) CAGATAAG 1 chr2R:12947173-12947293 ( 40) CAGATAAG 1 chr2L:8328046-8328166 ( 16) CAGATAAG 1 chr3L:3142655-3142775 ( 82) CAGATAAG 1 chr2R:21831523-21831643 ( 48) CCGATAAA 1 chr3L:300381-300501 ( 85) CCGATAAA 1 chr2R:15529127-15529247 ( 76) GTGATAAC 1 chr2R:24975408-24975528 ( 42) GTGATAAC 1 chr3R:21749403-21749523 ( 102) ATGATAAG 1 chr2R:7710187-7710307 ( 43) ATGATAAG 1 chr2R:15220989-15221109 ( 27) GAGATAAG 1 chr2L:16445170-16445290 ( 59) GAGATAAG 1 chr2R:9073432-9073552 ( 75) TTGATAAA 1 chr2L:8933968-8934088 ( 78) TTGATAAA 1 chr3L:3349877-3349997 ( 51) GCGATAAA 1 chrX:15464667-15464787 ( 35) TTGATAAA 1 chr3L:7940659-7940779 ( 44) TTGATAAA 1 chrX:12682677-12682797 ( 102) GCGATAAA 1 chr3L:1324963-1325083 ( 45) TTGATAAA 1 chr2R:9411084-9411204 ( 69) GCGATAAA 1 chr2R:8158348-8158468 ( 78) TTGATAAC 1 chr3R:4294836-4294956 ( 84) GCGATAAC 1 chr2L:9949560-9949680 ( 14) ACGATAAG 1 chr2R:25224949-25225069 ( 57) ACGATAAG 1 chr3L:9139691-9139811 ( 59) CTGATAAT 1 chr3L:3469836-3469956 ( 98) CTGATAAT 1 chr3L:13019649-13019769 ( 34) CTGATAAT 1 chr3R:24563520-24563640 ( 4) CAGATAAA 1 chr2R:13588403-13588523 ( 53) CAGATAAA 1 chr3R:22456132-22456252 ( 94) ATGATAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGATAAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.9669 E= 4.4e-016 -213 116 20 -46 -145 34 -1291 112 -1291 -1291 222 -1291 182 -1291 -1291 -1291 -1291 -1291 -1291 181 182 -1291 -1291 -1291 182 -1291 -1291 -1291 -54 -73 157 -287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGATAAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 4.4e-016 0.064935 0.480519 0.246753 0.207792 0.103896 0.272727 0.000000 0.623377 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.194805 0.129870 0.636364 0.038961 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGATAAG MEME-2 regular expression -------------------------------------------------------------------------------- [CGT][TC]GATAAG -------------------------------------------------------------------------------- Time 13.51 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTGGCCA MEME-3 width = 8 sites = 20 llr = 188 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTGGCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 22:::aa: probability G 241aa::: matrix T 75a::::: bits 2.2 **** 2.0 **** 1.8 ***** 1.6 ****** Relative 1.3 ****** Entropy 1.1 ****** (13.6 bits) 0.9 ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGGCCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGGCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2199433-2199553 78 1.07e-05 GGATGATAAT TGTGGCCA AGTGTCCAGT chr2R:12947173-12947293 54 1.07e-05 TAAGCCGAAT TGTGGCCA ATTTAGACAA chr2L:2807786-2807906 88 1.07e-05 AATGCCCCAT TGTGGCCA AGCGAGTGCC chr2R:11336624-11336744 64 1.07e-05 CAGAAAGAAT TGTGGCCA AGATTTATGA chrX:5427399-5427519 48 2.49e-05 TCCGGAGTCA TTTGGCCA AGGTCACGCG chr3R:21757904-21758024 32 2.49e-05 TCGATCACTA TTTGGCCA TAAATTTGTT chr3R:5309404-5309524 104 2.49e-05 GGCATCGTGT TTTGGCCA AGTACCTTT chr3R:9644081-9644201 105 2.49e-05 CGATCTGAAT TTTGGCCA CAATCTAA chr3L:8604846-8604966 34 2.49e-05 CCAGGCCACT TTTGGCCA TTTTGTGGCA chr3L:300381-300501 12 2.49e-05 GTAATGATAT TTTGGCCA TTCCCCGCCA chr3R:14796462-14796582 106 3.55e-05 TCGAGGAGAT TCTGGCCA AGTGCGG chr3R:23177602-23177722 2 3.55e-05 G TCTGGCCA TATTTATAAG chr3R:15852061-15852181 65 3.55e-05 ACGCCGTTTA TCTGGCCA GCAGAAATTA chr3R:12700103-12700223 113 5.16e-05 TGATAAGATT CGTGGCCA chr3R:19792836-19792956 29 5.16e-05 ATGGGCTGGT CGTGGCCA TATGATAATG chrX:15465620-15465740 90 5.16e-05 AAACTAAGCA GGTGGCCA ACTTCGCTTG chr3R:19785521-19785641 29 7.29e-05 TTTTGTTACC GTTGGCCA ACACATTTGG chr3L:16652695-16652815 14 7.29e-05 CTGCAAATCA GTTGGCCA ACCTTATCGG chr2L:4388072-4388192 31 7.29e-05 TGGGTGAACA CTTGGCCA CTAGGCCAGG chr3L:10867055-10867175 17 9.70e-05 AGCGGCGGGA TGGGGCCA GAGATCGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGGCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2199433-2199553 1.1e-05 77_[+3]_35 chr2R:12947173-12947293 1.1e-05 53_[+3]_59 chr2L:2807786-2807906 1.1e-05 87_[+3]_25 chr2R:11336624-11336744 1.1e-05 63_[+3]_49 chrX:5427399-5427519 2.5e-05 47_[+3]_65 chr3R:21757904-21758024 2.5e-05 31_[+3]_81 chr3R:5309404-5309524 2.5e-05 103_[+3]_9 chr3R:9644081-9644201 2.5e-05 104_[+3]_8 chr3L:8604846-8604966 2.5e-05 33_[+3]_79 chr3L:300381-300501 2.5e-05 11_[+3]_101 chr3R:14796462-14796582 3.6e-05 105_[+3]_7 chr3R:23177602-23177722 3.6e-05 1_[+3]_111 chr3R:15852061-15852181 3.6e-05 64_[+3]_48 chr3R:12700103-12700223 5.2e-05 112_[+3] chr3R:19792836-19792956 5.2e-05 28_[+3]_84 chrX:15465620-15465740 5.2e-05 89_[+3]_23 chr3R:19785521-19785641 7.3e-05 28_[+3]_84 chr3L:16652695-16652815 7.3e-05 13_[+3]_99 chr2L:4388072-4388192 7.3e-05 30_[+3]_82 chr3L:10867055-10867175 9.7e-05 16_[+3]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGGCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTGGCCA width=8 seqs=20 chrX:2199433-2199553 ( 78) TGTGGCCA 1 chr2R:12947173-12947293 ( 54) TGTGGCCA 1 chr2L:2807786-2807906 ( 88) TGTGGCCA 1 chr2R:11336624-11336744 ( 64) TGTGGCCA 1 chrX:5427399-5427519 ( 48) TTTGGCCA 1 chr3R:21757904-21758024 ( 32) TTTGGCCA 1 chr3R:5309404-5309524 ( 104) TTTGGCCA 1 chr3R:9644081-9644201 ( 105) TTTGGCCA 1 chr3L:8604846-8604966 ( 34) TTTGGCCA 1 chr3L:300381-300501 ( 12) TTTGGCCA 1 chr3R:14796462-14796582 ( 106) TCTGGCCA 1 chr3R:23177602-23177722 ( 2) TCTGGCCA 1 chr3R:15852061-15852181 ( 65) TCTGGCCA 1 chr3R:12700103-12700223 ( 113) CGTGGCCA 1 chr3R:19792836-19792956 ( 29) CGTGGCCA 1 chrX:15465620-15465740 ( 90) GGTGGCCA 1 chr3R:19785521-19785641 ( 29) GTTGGCCA 1 chr3L:16652695-16652815 ( 14) GTTGGCCA 1 chr2L:4388072-4388192 ( 31) CTTGGCCA 1 chr3L:10867055-10867175 ( 17) TGGGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGGCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.89693 E= 1.2e+004 -1097 -52 -52 129 -1097 -52 90 65 -1097 -1097 -210 173 -1097 -1097 222 -1097 -1097 -1097 222 -1097 -1097 221 -1097 -1097 -1097 221 -1097 -1097 182 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGGCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.2e+004 0.000000 0.150000 0.150000 0.700000 0.000000 0.150000 0.400000 0.450000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTGGCCA MEME-3 regular expression -------------------------------------------------------------------------------- T[TG]TGGCCA -------------------------------------------------------------------------------- Time 19.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAGCACA MEME-4 width = 8 sites = 12 llr = 119 E-value = 4.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGCACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :aa3:a3a pos.-specific C a:::a:8: probability G :::8:::: matrix T :::::::: bits 2.2 * * 2.0 * * 1.8 *** ** * 1.6 *** ** * Relative 1.3 ******** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGCACA consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6367624-6367744 110 1.39e-05 AAGAATTCTA CAAGCACA GTC chrX:9932416-9932536 10 1.39e-05 atacagata caagcaca gatacagata chrX:13646298-13646418 45 1.39e-05 TCCAAACATT CAAGCACA AAATGTCGAG chr3L:3142655-3142775 46 1.39e-05 ACTGGAGCGT CAAGCACA CGCCATGTGC chr3L:300381-300501 46 1.39e-05 TCGGCGCGAT CAAGCACA AGCAGTATTA chr2R:8143867-8143987 104 1.39e-05 CCGCGAAGTA CAAGCACA TTTGCACAC chr3L:8787857-8787977 100 5.06e-05 AGATGTTTTA CAAGCAAA GATTTACGAG chr2L:19389807-19389927 92 5.06e-05 TAGAGATACA CAAACACA AACACTGCGA chr3L:14559071-14559191 109 5.06e-05 GCCGCCTGCA CAAACACA CACG chr3L:13019649-13019769 88 5.06e-05 GCCGCATTAG CAAGCAAA TGAAACAGCT chr3L:8097212-8097332 72 5.06e-05 ATTTCATGTC CAAGCAAA ACTCCTTCAC chr2R:19502403-19502523 105 5.06e-05 CACACAGTTC CAAACACA TTTAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6367624-6367744 1.4e-05 109_[+4]_3 chrX:9932416-9932536 1.4e-05 9_[+4]_103 chrX:13646298-13646418 1.4e-05 44_[+4]_68 chr3L:3142655-3142775 1.4e-05 45_[+4]_67 chr3L:300381-300501 1.4e-05 45_[+4]_67 chr2R:8143867-8143987 1.4e-05 103_[+4]_9 chr3L:8787857-8787977 5.1e-05 99_[+4]_13 chr2L:19389807-19389927 5.1e-05 91_[+4]_21 chr3L:14559071-14559191 5.1e-05 108_[+4]_4 chr3L:13019649-13019769 5.1e-05 87_[+4]_25 chr3L:8097212-8097332 5.1e-05 71_[+4]_41 chr2R:19502403-19502523 5.1e-05 104_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGCACA width=8 seqs=12 chr2L:6367624-6367744 ( 110) CAAGCACA 1 chrX:9932416-9932536 ( 10) CAAGCACA 1 chrX:13646298-13646418 ( 45) CAAGCACA 1 chr3L:3142655-3142775 ( 46) CAAGCACA 1 chr3L:300381-300501 ( 46) CAAGCACA 1 chr2R:8143867-8143987 ( 104) CAAGCACA 1 chr3L:8787857-8787977 ( 100) CAAGCAAA 1 chr2L:19389807-19389927 ( 92) CAAACACA 1 chr3L:14559071-14559191 ( 109) CAAACACA 1 chr3L:13019649-13019769 ( 88) CAAGCAAA 1 chr3L:8097212-8097332 ( 72) CAAGCAAA 1 chr2R:19502403-19502523 ( 105) CAAACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 4.6e+005 -1023 221 -1023 -1023 181 -1023 -1023 -1023 181 -1023 -1023 -1023 -18 -1023 180 -1023 -1023 221 -1023 -1023 181 -1023 -1023 -1023 -18 180 -1023 -1023 181 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.6e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCACA MEME-4 regular expression -------------------------------------------------------------------------------- CAA[GA]CA[CA]A -------------------------------------------------------------------------------- Time 25.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCCGCC MEME-5 width = 8 sites = 3 llr = 36 E-value = 5.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aaaa:aa probability G :::::a:: matrix T a::::::: bits 2.2 ******* 2.0 ******* 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24642401-24642521 83 6.07e-06 AGCAAATAGC TCCCCGCC CACGCTTATC chr3R:29686847-29686967 84 6.07e-06 TTTGATTGCA TCCCCGCC AGCTGATAAG chr3L:300381-300501 21 6.07e-06 TTTTGGCCAT TCCCCGCC AGTACCCTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24642401-24642521 6.1e-06 82_[+5]_30 chr3R:29686847-29686967 6.1e-06 83_[+5]_29 chr3L:300381-300501 6.1e-06 20_[+5]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCCGCC width=8 seqs=3 chr2R:24642401-24642521 ( 83) TCCCCGCC 1 chr3R:29686847-29686967 ( 84) TCCCCGCC 1 chr3L:300381-300501 ( 21) TCCCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 5.0e+005 -823 -823 -823 180 -823 221 -823 -823 -823 221 -823 -823 -823 221 -823 -823 -823 221 -823 -823 -823 -823 222 -823 -823 221 -823 -823 -823 221 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.0e+005 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCCGCC MEME-5 regular expression -------------------------------------------------------------------------------- TCCCCGCC -------------------------------------------------------------------------------- Time 31.12 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22456132-22456252 1.14e-01 45_[+1(6.24e-05)]_67 chr2R:18618174-18618294 5.72e-01 120 chrX:10926387-10926507 8.11e-02 29_[+2(9.00e-05)]_83 chr3L:20777637-20777757 4.78e-01 120 chrX:509262-509382 7.75e-02 9_[+1(9.08e-05)]_103 chr2R:18433137-18433257 4.34e-01 120 chr2L:8157302-8157422 5.90e-02 56_[+2(1.86e-05)]_56 chr3R:22453403-22453523 3.91e-02 2_[+3(8.90e-05)]_110 chr3R:15852061-15852181 4.26e-04 36_[+2(1.86e-05)]_20_[+3(3.55e-05)]_\ 48 chr2L:16445170-16445290 2.78e-01 120 chr2L:4389524-4389644 2.22e-01 120 chr2L:7213758-7213878 4.95e-01 120 chr2L:18955815-18955935 4.85e-01 120 chr2R:18760144-18760264 8.47e-01 120 chr2L:5027566-5027686 9.29e-01 120 chr3R:12715386-12715506 6.26e-01 120 chr2R:11340135-11340255 3.29e-02 120 chr2L:13967038-13967158 4.22e-02 120 chr2R:19502403-19502523 4.39e-02 104_[+4(5.06e-05)]_8 chr3R:4235093-4235213 3.42e-02 2_[+1(7.66e-05)]_11_[+1(1.88e-05)]_\ 91 chr3R:12259110-12259230 4.70e-01 120 chr3L:2530301-2530421 5.00e-01 120 chr3R:22455398-22455518 8.11e-01 120 chr3R:15991769-15991889 1.71e-02 99_[+1(3.75e-05)]_13 chr2R:17756482-17756602 2.31e-02 120 chr3R:23095441-23095561 5.14e-01 120 chr2L:5025737-5025857 3.45e-02 93_[+2(1.86e-05)]_19 chr3L:4231781-4231901 2.53e-01 120 chr3L:14609478-14609598 5.57e-01 120 chr3L:9615975-9616095 1.31e-01 97_[+2(1.86e-05)]_15 chrX:11095405-11095525 7.58e-02 120 chr3R:26871198-26871318 6.54e-03 48_[+1(1.88e-05)]_28_[+1(1.88e-05)]_\ 28 chr3L:9074363-9074483 6.73e-01 120 chr3R:22454492-22454612 4.01e-01 120 chr2L:4896687-4896807 4.73e-01 120 chr2L:6423339-6423459 2.40e-01 120 chr2L:14015276-14015396 1.76e-02 15_[+2(1.86e-05)]_38_[+2(5.12e-05)]_\ 51 chr2R:24138718-24138838 2.72e-02 55_[+1(3.75e-05)]_57 chr2R:9411084-9411204 1.05e-01 120 chr3L:1324963-1325083 1.82e-02 120 chr2L:19386425-19386545 3.73e-01 120 chrX:11873260-11873380 1.48e-01 10_[+2(9.00e-05)]_102 chrX:12682677-12682797 8.98e-02 120 chr3L:12837341-12837461 2.93e-01 120 chr2R:13588403-13588523 3.68e-01 120 chr3R:23177602-23177722 2.81e-03 1_[+3(3.55e-05)]_111 chr3L:11965041-11965161 2.45e-01 120 chr2R:14225743-14225863 6.79e-02 120 chr2R:19501397-19501517 1.63e-02 [+2(5.12e-05)]_112 chr3L:3306620-3306740 1.92e-01 66_[+1(7.66e-05)]_46 chrX:17845946-17846066 2.07e-02 63_[+2(1.86e-05)]_49 chr3L:8097212-8097332 6.21e-02 71_[+4(5.06e-05)]_41 chr3L:7358648-7358768 7.36e-02 120 chr2R:24975408-24975528 1.19e-01 120 chr2R:22599144-22599264 5.97e-01 120 chr2R:24985034-24985154 2.50e-01 120 chr3L:1854115-1854235 1.44e-03 79_[+1(6.24e-05)]_33 chr2L:8328834-8328954 8.94e-01 120 chr2R:8143867-8143987 1.40e-04 16_[+1(1.88e-05)]_79_[+4(1.39e-05)]_\ 9 chr2R:17054079-17054199 3.77e-01 120 chr3R:12685397-12685517 7.30e-01 120 chr2L:8496397-8496517 5.62e-01 120 chr2R:25188722-25188842 4.89e-01 120 chr3R:22450208-22450328 7.76e-02 120 chr3R:9437663-9437783 4.11e-01 120 chr2R:10883385-10883505 2.08e-01 96_[+1(7.66e-05)]_16 chr2R:12342878-12342998 1.82e-02 95_[+2(1.86e-05)]_17 chr2R:11382948-11383068 7.55e-02 69_[+1(6.24e-05)]_43 chr2L:7789204-7789324 2.72e-01 120 chr2L:16882954-16883074 8.02e-02 63_[+1(3.75e-05)]_49 chr3L:12085084-12085204 4.35e-03 95_[+2(9.00e-05)]_17 chr2L:7814236-7814356 2.97e-01 120 chr2R:9831205-9831325 5.52e-01 120 chr3L:20193775-20193895 4.55e-01 120 chr2R:7710187-7710307 7.44e-02 120 chr3L:12039184-12039304 4.83e-01 120 chr2L:5092143-5092263 7.58e-01 120 chr3L:13019649-13019769 2.35e-02 87_[+4(5.06e-05)]_25 chr2R:11218795-11218915 2.19e-03 62_[+4(7.49e-05)]_37_[+2(3.26e-05)]_\ 5 chr2R:7155410-7155530 7.42e-01 120 chr3R:28603667-28603787 2.99e-02 120 chr3L:20223623-20223743 6.78e-01 120 chr2R:12755291-12755411 5.30e-01 120 chr3R:27954661-27954781 6.37e-01 120 chr2L:495960-496080 4.92e-01 120 chr2R:16009170-16009290 2.34e-01 120 chr2R:10128333-10128453 3.16e-02 52_[+1(3.75e-05)]_60 chr2R:6202452-6202572 7.41e-01 120 chr2R:16834479-16834599 5.64e-01 120 chr3R:30201135-30201255 6.19e-01 120 chr2L:14012533-14012653 7.73e-02 120 chr2R:5783561-5783681 4.92e-01 120 chr2R:18018125-18018245 3.08e-04 18_[+4(7.49e-05)]_6_[+1(1.88e-05)]_\ 80 chr3R:8521597-8521717 7.88e-03 4_[+2(9.00e-05)]_108 chr3R:4294836-4294956 8.85e-02 120 chr3R:13705408-13705528 9.67e-01 120 chr2L:2039613-2039733 3.41e-01 120 chr3L:300381-300501 7.92e-07 11_[+3(2.49e-05)]_1_[+5(6.07e-06)]_\ 17_[+4(1.39e-05)]_67 chr3L:7940659-7940779 4.36e-01 120 chr2R:15220989-15221109 2.63e-01 120 chr3L:6216639-6216759 7.19e-01 120 chr2R:25224949-25225069 4.08e-01 120 chr2L:12465459-12465579 9.05e-02 11_[+2(1.86e-05)]_101 chr3R:10877962-10878082 1.14e-01 120 chr3L:349968-350088 9.76e-01 120 chr3L:3142655-3142775 2.44e-03 45_[+4(1.39e-05)]_67 chr3L:12791989-12792109 6.01e-03 106_[+1(1.88e-05)]_6 chr2L:4388072-4388192 7.79e-02 30_[+3(7.29e-05)]_82 chr3L:14559071-14559191 1.16e-02 108_[+4(5.06e-05)]_4 chr3R:5654037-5654157 1.42e-03 4_[+2(1.86e-05)]_8_[+1(3.75e-05)]_\ 67_[+1(7.66e-05)]_17 chr2R:6247976-6248096 3.12e-01 120 chrX:18857528-18857648 1.41e-01 120 chr3L:19156308-19156428 8.01e-02 78_[+1(1.88e-05)]_34 chrX:13646298-13646418 1.85e-02 44_[+4(1.39e-05)]_68 chr2L:3445799-3445919 1.05e-01 120 chr2L:20397157-20397277 1.48e-01 120 chr3R:21749197-21749317 8.09e-02 120 chr2L:13141063-13141183 3.88e-01 120 chr2R:11193014-11193134 9.02e-01 120 chr3L:2504249-2504369 1.81e-02 69_[+2(9.00e-05)]_43 chr3R:26570473-26570593 4.24e-01 120 chr2R:11336624-11336744 2.27e-02 63_[+3(1.07e-05)]_49 chr3L:3469836-3469956 3.00e-01 120 chr3L:11966236-11966356 3.58e-01 120 chr2L:10316013-10316133 2.32e-02 120 chr3L:1534892-1535012 8.50e-01 120 chr3L:17005512-17005632 9.99e-01 120 chr2L:8130139-8130259 4.39e-03 23_[+1(7.66e-05)]_89 chr2L:3696593-3696713 7.14e-01 120 chr3L:2809930-2810050 1.06e-02 99_[+2(1.86e-05)]_13 chr2L:8987623-8987743 1.67e-01 107_[+2(1.86e-05)]_5 chr3L:8604846-8604966 4.05e-02 33_[+3(2.49e-05)]_79 chr2L:12055523-12055643 1.03e-01 120 chr2R:15928516-15928636 3.42e-01 120 chrX:3442929-3443049 6.89e-01 120 chr3R:9644081-9644201 8.70e-02 104_[+3(2.49e-05)]_8 chr2R:6205999-6206119 2.03e-01 8_[+1(7.66e-05)]_104 chr2L:19389807-19389927 7.42e-02 91_[+4(5.06e-05)]_21 chr3R:5309404-5309524 5.70e-02 8_[+3(8.90e-05)]_87_[+3(2.49e-05)]_\ 9 chr3L:7760306-7760426 5.50e-02 120 chr2R:12166390-12166510 3.06e-01 120 chr3R:7514596-7514716 3.05e-01 120 chr2R:24071269-24071389 1.13e-01 120 chr2R:8084343-8084463 1.17e-01 120 chr3R:9043772-9043892 5.29e-02 5_[+5(6.07e-06)]_107 chr2R:17095348-17095468 2.76e-02 58_[+2(5.12e-05)]_54 chr3R:21757904-21758024 1.02e-01 31_[+3(2.49e-05)]_81 chr2L:21304136-21304256 5.19e-01 120 chr2L:8991719-8991839 1.25e-01 66_[+1(7.66e-05)]_46 chrX:9932416-9932536 4.39e-02 9_[+4(1.39e-05)]_103 chr3R:26426742-26426862 3.81e-01 120 chr2L:13841601-13841721 4.13e-01 120 chr3L:9139691-9139811 1.31e-01 120 chr3L:21285412-21285532 4.63e-03 74_[+2(1.86e-05)]_38 chrX:2531442-2531562 9.54e-01 120 chr2L:8937702-8937822 2.77e-01 64_[+1(6.24e-05)]_48 chr3L:20366215-20366335 2.37e-02 33_[+1(1.88e-05)]_79 chr3R:15231871-15231991 4.84e-02 120 chr3L:876794-876914 4.34e-01 120 chr3R:29686847-29686967 5.51e-06 36_[+1(1.88e-05)]_39_[+5(6.07e-06)]_\ 2_[+2(1.86e-05)]_19 chrX:13637006-13637126 7.53e-04 42_[+1(3.75e-05)]_70 chr2L:14745085-14745205 2.03e-01 120 chr2R:21831523-21831643 1.23e-01 120 chrX:15464667-15464787 5.29e-03 11_[+5(2.12e-05)]_101 chrX:11620639-11620759 1.56e-02 27_[+1(6.24e-05)]_85 chrX:11718011-11718131 1.49e-01 2_[+1(6.24e-05)]_110 chrX:12593640-12593760 1.31e-02 109_[+2(9.00e-05)]_3 chr2L:7791137-7791257 2.22e-01 120 chr2R:6702234-6702354 6.47e-04 3_[+1(3.75e-05)]_109 chr2R:18547305-18547425 1.15e-02 29_[+1(7.66e-05)]_40_[+2(9.00e-05)]_\ 35 chr3L:11290431-11290551 5.83e-02 23_[+1(1.88e-05)]_89 chr2R:12855553-12855673 6.19e-01 120 chr3L:140317-140437 9.65e-01 120 chr3R:23534725-23534845 2.39e-01 120 chr3R:11637722-11637842 2.19e-03 5_[+1(6.24e-05)]_69_[+3(8.90e-05)]_\ 30 chr2R:11423582-11423702 3.65e-02 120 chr3R:15246712-15246832 7.25e-02 89_[+2(1.86e-05)]_23 chr2L:3461876-3461996 8.88e-03 [+1(1.88e-05)]_112 chr3L:3349877-3349997 1.80e-01 120 chr3R:8292189-8292309 3.19e-02 25_[+2(9.00e-05)]_87 chr2L:8933968-8934088 3.90e-01 120 chr3R:14796462-14796582 3.27e-03 105_[+3(3.55e-05)]_7 chr2R:9139400-9139520 9.83e-02 120 chr3R:21749403-21749523 6.91e-02 120 chr2R:7988604-7988724 2.06e-01 120 chr2R:6033252-6033372 1.81e-02 94_[+2(5.12e-05)]_18 chr3L:7344125-7344245 4.99e-02 120 chr2R:16824003-16824123 4.37e-01 120 chr2R:21832494-21832614 6.94e-02 120 chr2L:19097458-19097578 4.86e-01 120 chr2L:2807786-2807906 3.88e-02 87_[+3(1.07e-05)]_25 chr3L:2402391-2402511 8.90e-03 50_[+1(6.24e-05)]_62 chrX:16747589-16747709 4.79e-02 44_[+2(1.86e-05)]_68 chr2L:8328046-8328166 2.88e-01 120 chr2R:16668548-16668668 1.58e-01 102_[+1(6.24e-05)]_10 chr2R:21532154-21532274 8.43e-02 120 chr3L:16652695-16652815 1.56e-02 13_[+3(7.29e-05)]_1_[+1(9.08e-05)]_\ 90 chr3R:26259986-26260106 4.21e-01 120 chr2R:12947173-12947293 7.78e-03 53_[+3(1.07e-05)]_59 chr3L:1784283-1784403 7.27e-01 120 chr3R:11126507-11126627 3.26e-01 120 chr3R:11691877-11691997 1.32e-01 120 chr3R:10059524-10059644 4.20e-01 120 chr2R:14873440-14873560 2.17e-01 120 chr2R:21118368-21118488 4.88e-02 95_[+1(3.75e-05)]_17 chr2L:19763757-19763877 4.90e-01 120 chrX:5885086-5885206 1.05e-01 120 chr3R:16996697-16996817 3.41e-02 94_[+1(6.24e-05)]_18 chr3R:18291980-18292100 4.31e-01 120 chr3L:6517070-6517190 1.37e-01 8_[+1(7.66e-05)]_104 chr3R:24563520-24563640 1.03e-01 120 chr3R:9646596-9646716 1.15e-01 120 chr3L:7760507-7760627 2.21e-01 120 chr2L:9949560-9949680 6.38e-03 6_[+4(5.06e-05)]_106 chr2R:15529127-15529247 4.43e-02 94_[+1(7.66e-05)]_18 chr2R:22599358-22599478 2.27e-01 120 chr3R:24862815-24862935 1.75e-01 120 chrX:17659208-17659328 9.98e-01 120 chr2R:9073432-9073552 9.05e-02 120 chr2L:5720546-5720666 9.81e-02 79_[+1(3.75e-05)]_33 chr2R:10040540-10040660 2.47e-01 52_[+1(6.24e-05)]_60 chr3L:16666605-16666725 1.72e-01 120 chr3L:19495076-19495196 2.83e-01 58_[+2(9.00e-05)]_54 chr3L:15520100-15520220 9.04e-01 120 chrX:2199433-2199553 1.66e-02 77_[+3(1.07e-05)]_35 chrX:1170468-1170588 6.05e-01 120 chr2L:20074538-20074658 1.05e-01 57_[+2(9.00e-05)]_55 chr2L:5029296-5029416 3.61e-01 120 chr2L:6367624-6367744 2.36e-03 64_[+2(1.86e-05)]_5_[+4(5.06e-05)]_\ 24_[+4(1.39e-05)]_3 chrX:1285444-1285564 6.93e-01 120 chr3R:17624702-17624822 2.28e-01 120 chrX:15465620-15465740 1.66e-02 89_[+3(5.16e-05)]_23 chr2L:16447099-16447219 9.61e-01 120 chr3R:19792836-19792956 2.55e-03 28_[+3(5.16e-05)]_29_[+2(1.86e-05)]_\ 47 chr2R:23615523-23615643 7.12e-02 112_[+2(9.00e-05)] chr3R:16200857-16200977 3.04e-01 120 chr3R:19785521-19785641 3.51e-03 28_[+3(7.29e-05)]_84 chr2R:11338837-11338957 2.18e-01 120 chr3R:12700103-12700223 2.11e-04 101_[+2(5.12e-05)]_3_[+3(5.16e-05)] chr3L:8787857-8787977 6.99e-02 99_[+4(5.06e-05)]_13 chr3R:19783505-19783625 2.15e-02 95_[+1(1.88e-05)]_17 chr2R:8158348-8158468 4.42e-01 120 chrX:12469308-12469428 1.73e-01 120 chr2L:10529143-10529263 9.76e-03 65_[+1(1.88e-05)]_47 chr2L:7240441-7240561 6.77e-01 120 chrX:5427399-5427519 1.33e-01 47_[+3(2.49e-05)]_65 chr2R:24642401-24642521 1.59e-04 23_[+2(9.00e-05)]_51_[+5(6.07e-06)]_\ 3_[+1(7.66e-05)]_19 chr3L:10867055-10867175 8.87e-02 16_[+3(9.70e-05)]_96 chr2L:9529979-9530099 3.74e-02 120 chr3L:12828642-12828762 9.09e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************