******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34367.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:5112563-5112683 1.0000 120 chr2R:17499297-17499417 1.0000 120 chr2R:8318264-8318384 1.0000 120 chr2L:5288330-5288450 1.0000 120 chr2R:7370405-7370525 1.0000 120 chr3L:13178330-13178450 1.0000 120 chr3L:10757110-10757230 1.0000 120 chr2R:21847830-21847950 1.0000 120 chr3L:15229586-15229706 1.0000 120 chrX:19485198-19485318 1.0000 120 chr3L:17577033-17577153 1.0000 120 chr3R:27177645-27177765 1.0000 120 chr2L:7923763-7923883 1.0000 120 chr3R:24970780-24970900 1.0000 120 chr2L:2485407-2485527 1.0000 120 chr3L:8822356-8822476 1.0000 120 chr2L:5372713-5372833 1.0000 120 chr2R:8995106-8995226 1.0000 120 chr3R:30259691-30259811 1.0000 120 chr3R:30265028-30265148 1.0000 120 chr3R:10533303-10533423 1.0000 120 chr3R:24953300-24953420 1.0000 120 chrX:17355907-17356027 1.0000 120 chr2L:11307209-11307329 1.0000 120 chrX:10202715-10202835 1.0000 120 chrX:18800298-18800418 1.0000 120 chrX:16723753-16723873 1.0000 120 chr3R:10829887-10830007 1.0000 120 chr3L:10968771-10968891 1.0000 120 chr3L:21720993-21721113 1.0000 120 chr2R:19968856-19968976 1.0000 120 chr2L:15386852-15386972 1.0000 120 chrX:19173097-19173217 1.0000 120 chr3L:11382729-11382849 1.0000 120 chrX:11123673-11123793 1.0000 120 chr2L:3582851-3582971 1.0000 120 chr2L:646667-646787 1.0000 120 chr3R:29847273-29847393 1.0000 120 chr3L:3106293-3106413 1.0000 120 chrX:17488522-17488642 1.0000 120 chr3L:6447849-6447969 1.0000 120 chr2L:10759719-10759839 1.0000 120 chr3L:14350950-14351070 1.0000 120 chr3R:8958452-8958572 1.0000 120 chr3L:11634665-11634785 1.0000 120 chr2R:8749899-8750019 1.0000 120 chr3L:9853284-9853404 1.0000 120 chr3L:10387683-10387803 1.0000 120 chr3L:16259596-16259716 1.0000 120 chrX:6745685-6745805 1.0000 120 chr2L:20146359-20146479 1.0000 120 chr3R:13916713-13916833 1.0000 120 chr2L:5751541-5751661 1.0000 120 chr3L:11136496-11136616 1.0000 120 chr3L:20990400-20990520 1.0000 120 chr3R:14373945-14374065 1.0000 120 chr3R:30326743-30326863 1.0000 120 chrX:5020160-5020280 1.0000 120 chr3R:30357210-30357330 1.0000 120 chrX:18537509-18537629 1.0000 120 chr2R:19806619-19806739 1.0000 120 chr3L:4731832-4731952 1.0000 120 chr3R:5095499-5095619 1.0000 120 chr2R:23567394-23567514 1.0000 120 chr2L:2432969-2433089 1.0000 120 chrX:3045550-3045670 1.0000 120 chrX:9399971-9400091 1.0000 120 chr3R:27069337-27069457 1.0000 120 chr3L:18078709-18078829 1.0000 120 chr3L:3709492-3709612 1.0000 120 chr3R:26502230-26502350 1.0000 120 chr3L:16174925-16175045 1.0000 120 chr3R:29280707-29280827 1.0000 120 chr2L:14529396-14529516 1.0000 120 chr3L:15220506-15220626 1.0000 120 chr2L:21005569-21005689 1.0000 120 chr2R:7848704-7848824 1.0000 120 chr2L:11069682-11069802 1.0000 120 chr3L:484983-485103 1.0000 120 chr2R:15000534-15000654 1.0000 120 chr2L:19156080-19156200 1.0000 120 chr2L:7899269-7899389 1.0000 120 chrX:13948306-13948426 1.0000 120 chr3L:20592689-20592809 1.0000 120 chrX:3010116-3010236 1.0000 120 chrX:4442658-4442778 1.0000 120 chr3L:20952185-20952305 1.0000 120 chr3L:18057934-18058054 1.0000 120 chr2L:20916956-20917076 1.0000 120 chr3L:3444396-3444516 1.0000 120 chr2L:15390594-15390714 1.0000 120 chr3L:1711339-1711459 1.0000 120 chr2R:15046977-15047097 1.0000 120 chrX:7540881-7541001 1.0000 120 chrX:5300994-5301114 1.0000 120 chr3L:13109488-13109608 1.0000 120 chr3R:22140169-22140289 1.0000 120 chrX:361560-361680 1.0000 120 chrX:2336609-2336729 1.0000 120 chr3R:21948765-21948885 1.0000 120 chr3L:11448515-11448635 1.0000 120 chr2R:14076231-14076351 1.0000 120 chr3L:6355185-6355305 1.0000 120 chr3R:8932858-8932978 1.0000 120 chr3L:20582473-20582593 1.0000 120 chr3L:2553200-2553320 1.0000 120 chr3R:29091683-29091803 1.0000 120 chrX:14017534-14017654 1.0000 120 chr3R:18998506-18998626 1.0000 120 chr3L:10923128-10923248 1.0000 120 chr2R:10057988-10058108 1.0000 120 chr2R:21495430-21495550 1.0000 120 chr2L:5479286-5479406 1.0000 120 chr3L:8360401-8360521 1.0000 120 chr2L:3557647-3557767 1.0000 120 chr2L:18122253-18122373 1.0000 120 chr3L:2800437-2800557 1.0000 120 chr2L:14236269-14236389 1.0000 120 chr2L:8919783-8919903 1.0000 120 chr3R:7025360-7025480 1.0000 120 chr4:60415-60535 1.0000 120 chr2L:21006727-21006847 1.0000 120 chrX:8747799-8747919 1.0000 120 chr2R:11544127-11544247 1.0000 120 chr3L:16762264-16762384 1.0000 120 chr2L:14569463-14569583 1.0000 120 chr2R:18215420-18215540 1.0000 120 chr3L:14610601-14610721 1.0000 120 chrX:17542875-17542995 1.0000 120 chr2L:13146382-13146502 1.0000 120 chr2R:23638007-23638127 1.0000 120 chr3R:22184210-22184330 1.0000 120 chr3L:21122703-21122823 1.0000 120 chr3L:11368503-11368623 1.0000 120 chr3R:28914234-28914354 1.0000 120 chr2L:11074057-11074177 1.0000 120 chr3L:1064550-1064670 1.0000 120 chrX:18544827-18544947 1.0000 120 chr2L:13545868-13545988 1.0000 120 chr3L:3442220-3442340 1.0000 120 chr3L:766445-766565 1.0000 120 chr2R:18926601-18926721 1.0000 120 chr2L:723913-724033 1.0000 120 chrX:14073680-14073800 1.0000 120 chr2L:11155846-11155966 1.0000 120 chr2R:15664677-15664797 1.0000 120 chr3R:30843222-30843342 1.0000 120 chr2L:15909323-15909443 1.0000 120 chr2L:19359945-19360065 1.0000 120 chr2R:18343067-18343187 1.0000 120 chr3R:31312447-31312567 1.0000 120 chrX:6528657-6528777 1.0000 120 chr2L:1409809-1409929 1.0000 120 chr3L:8013445-8013565 1.0000 120 chr3L:7134992-7135112 1.0000 120 chr3L:6458870-6458990 1.0000 120 chrX:3867181-3867301 1.0000 120 chr2L:15388424-15388544 1.0000 120 chr3R:30461719-30461839 1.0000 120 chr3R:24549883-24550003 1.0000 120 chrX:17537402-17537522 1.0000 120 chr2L:4028133-4028253 1.0000 120 chr3R:14389412-14389532 1.0000 120 chr3L:5128402-5128522 1.0000 120 chr2R:18879212-18879332 1.0000 120 chr2R:21543358-21543478 1.0000 120 chr2R:16836463-16836583 1.0000 120 chr2R:20580835-20580955 1.0000 120 chr3R:14390589-14390709 1.0000 120 chrX:14134069-14134189 1.0000 120 chr3R:9966255-9966375 1.0000 120 chr2R:9138288-9138408 1.0000 120 chr3L:4383224-4383344 1.0000 120 chr3L:15174278-15174398 1.0000 120 chr2L:609643-609763 1.0000 120 chrX:17807087-17807207 1.0000 120 chrX:6708206-6708326 1.0000 120 chr3R:15650399-15650519 1.0000 120 chr3R:21649624-21649744 1.0000 120 chr3R:8349943-8350063 1.0000 120 chrX:6028013-6028133 1.0000 120 chr2L:19454561-19454681 1.0000 120 chr3L:9462931-9463051 1.0000 120 chr2R:9282843-9282963 1.0000 120 chr3R:28544817-28544937 1.0000 120 chr3L:20635699-20635819 1.0000 120 chr2R:17439598-17439718 1.0000 120 chrX:9068945-9069065 1.0000 120 chrX:21127424-21127544 1.0000 120 chr2L:608268-608388 1.0000 120 chrX:7290949-7291069 1.0000 120 chrX:7535015-7535135 1.0000 120 chr2L:7541478-7541598 1.0000 120 chrX:8215558-8215678 1.0000 120 chrX:18929530-18929650 1.0000 120 chr2R:14569616-14569736 1.0000 120 chrX:17518445-17518565 1.0000 120 chr3L:3513152-3513272 1.0000 120 chr2L:5290016-5290136 1.0000 120 chrX:4435065-4435185 1.0000 120 chr2R:9714268-9714388 1.0000 120 chr2R:21569745-21569865 1.0000 120 chr3R:14673108-14673228 1.0000 120 chr3R:30284090-30284210 1.0000 120 chr3R:21935322-21935442 1.0000 120 chr3R:21648658-21648778 1.0000 120 chr3R:13845981-13846101 1.0000 120 chr2L:18517112-18517232 1.0000 120 chr3L:18790966-18791086 1.0000 120 chr3L:1810350-1810470 1.0000 120 chrX:20166778-20166898 1.0000 120 chr2L:20381463-20381583 1.0000 120 chr2L:11399637-11399757 1.0000 120 chr3L:7993708-7993828 1.0000 120 chrX:10585147-10585267 1.0000 120 chr3L:2805735-2805855 1.0000 120 chr3L:6457988-6458108 1.0000 120 chr3L:2866993-2867113 1.0000 120 chr3L:15264743-15264863 1.0000 120 chr2R:22402964-22403084 1.0000 120 chrX:10105838-10105958 1.0000 120 chrX:5053128-5053248 1.0000 120 chr3L:6155279-6155399 1.0000 120 chr3R:9389149-9389269 1.0000 120 chr3L:12915629-12915749 1.0000 120 chr2L:7323098-7323218 1.0000 120 chr2L:4211397-4211517 1.0000 120 chr2L:13665433-13665553 1.0000 120 chrX:12750420-12750540 1.0000 120 chr3L:20988987-20989107 1.0000 120 chrX:13754720-13754840 1.0000 120 chr3L:10913387-10913507 1.0000 120 chr3L:14463979-14464099 1.0000 120 chr2L:7879674-7879794 1.0000 120 chr3L:20632483-20632603 1.0000 120 chr3R:10589322-10589442 1.0000 120 chr3L:2808472-2808592 1.0000 120 chr2L:16591540-16591660 1.0000 120 chr2R:11749539-11749659 1.0000 120 chrX:7177299-7177419 1.0000 120 chrX:8730456-8730576 1.0000 120 chr2L:7424357-7424477 1.0000 120 chr3L:6085238-6085358 1.0000 120 chr2L:1456963-1457083 1.0000 120 chr3L:2386557-2386677 1.0000 120 chr3R:29055859-29055979 1.0000 120 chrX:9684226-9684346 1.0000 120 chr2R:15745249-15745369 1.0000 120 chr3L:13212986-13213106 1.0000 120 chr2R:8195172-8195292 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG34367/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34367.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.34 C 0.155 G 0.159 T 0.346 Background letter frequencies (from file dataset with add-one prior applied): A 0.34 C 0.156 G 0.159 T 0.346 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGCWGCA MEME-1 width = 8 sites = 26 llr = 237 E-value = 4.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCWGCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 171:5::a pos.-specific C 72:81:a: probability G 2:921a:: matrix T :1::3::: bits 2.7 ** 2.4 ** 2.1 ** ** 1.9 ** ** Relative 1.6 ** *** Entropy 1.3 * ** *** (13.1 bits) 1.1 * ** *** 0.8 * ** *** 0.5 **** *** 0.3 **** *** 0.0 -------- Multilevel CAGCAGCA consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7134992-7135112 27 3.77e-06 acaatagcgg cagcagca acaaccacaa chr2L:13545868-13545988 32 3.77e-06 acaacagcaa cagcagca acaaaaaaca chr3R:28914234-28914354 67 3.77e-06 CGCGCTCGAC CAGCAGCA ATTTTATTGT chr2L:13665433-13665553 88 1.11e-05 GGCGCGGCAG CAGCGGCA GTTCGACGTG chrX:18544827-18544947 89 1.11e-05 TACAGTGACA CAGCCGCA GAAGCAGAAA chr3L:8360401-8360521 87 1.11e-05 AAAAACAAAA CAGCGGCA GACAAATAAA chr3L:16259596-16259716 18 1.11e-05 ACCCTTTTGC CAGCTGCA CGCCGAAAAA chr2L:3557647-3557767 29 1.28e-05 TTCTAAAACA CCGCAGCA TTGAGGAGCA chr3R:10589322-10589442 13 2.00e-05 CAAAAATCGA CCGCTGCA TTTTGTTGGC chr3R:22140169-22140289 47 2.00e-05 CTGGCATTTG CCGCTGCA CTTTTTCTTC chrX:16723753-16723873 29 2.39e-05 agaactaaaa caggagca ataagaacaa chrX:8730456-8730576 34 3.14e-05 TTTGCGTTTA GAGCTGCA TTAATGTTTT chr3L:1064550-1064670 111 3.14e-05 GTAGTTCAAA GAGCGGCA AC chr2R:10057988-10058108 67 3.14e-05 AGAGCGCGAG GAGCTGCA AAAAGGAGAA chr2L:20381463-20381583 44 3.70e-05 ATATAACATT GCGCAGCA GATGGAGTTT chr2R:18343067-18343187 113 3.70e-05 TATTAAGACT CTGCAGCA chr3L:2800437-2800557 57 4.44e-05 CCATTTTCCT CAGGTGCA CTGAAATCAC chr3L:6155279-6155399 60 6.53e-05 TCGTTTTTGG CTGCCGCA TCAACTGGGT chr3L:7993708-7993828 40 6.53e-05 CTTAAAAAAA AAGCAGCA ACGCAACGTT chr3L:8013445-8013565 59 6.53e-05 GCTTAACAAA AAGCAGCA AGGTCACACT chrX:11123673-11123793 18 6.53e-05 CAACAATTTA CTGCTGCA CGCACACTGC chr2R:7370405-7370525 5 6.53e-05 GAAA AAGCAGCA GGTGTGTTTT chr2R:17439598-17439718 61 6.92e-05 GCGGCGCGGG GAGGAGCA TCCAAACGCG chr2R:16836463-16836583 23 1.01e-04 ATATGCCTTG CAACAGCA ATTTAAGTAT chr2R:18879212-18879332 44 1.01e-04 ATAAATTCTT CAACAGCA AACAAACGAA chr3L:9853284-9853404 15 1.12e-04 GACAAAGACA GAGGCGCA TGCGAAAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7134992-7135112 3.8e-06 26_[+1]_86 chr2L:13545868-13545988 3.8e-06 31_[+1]_81 chr3R:28914234-28914354 3.8e-06 66_[+1]_46 chr2L:13665433-13665553 1.1e-05 87_[+1]_25 chrX:18544827-18544947 1.1e-05 88_[+1]_24 chr3L:8360401-8360521 1.1e-05 86_[+1]_26 chr3L:16259596-16259716 1.1e-05 17_[+1]_95 chr2L:3557647-3557767 1.3e-05 28_[+1]_84 chr3R:10589322-10589442 2e-05 12_[+1]_100 chr3R:22140169-22140289 2e-05 46_[+1]_66 chrX:16723753-16723873 2.4e-05 28_[+1]_84 chrX:8730456-8730576 3.1e-05 33_[+1]_79 chr3L:1064550-1064670 3.1e-05 110_[+1]_2 chr2R:10057988-10058108 3.1e-05 66_[+1]_46 chr2L:20381463-20381583 3.7e-05 43_[+1]_69 chr2R:18343067-18343187 3.7e-05 112_[+1] chr3L:2800437-2800557 4.4e-05 56_[+1]_56 chr3L:6155279-6155399 6.5e-05 59_[+1]_53 chr3L:7993708-7993828 6.5e-05 39_[+1]_73 chr3L:8013445-8013565 6.5e-05 58_[+1]_54 chrX:11123673-11123793 6.5e-05 17_[+1]_95 chr2R:7370405-7370525 6.5e-05 4_[+1]_108 chr2R:17439598-17439718 6.9e-05 60_[+1]_52 chr2R:16836463-16836583 0.0001 22_[+1]_90 chr2R:18879212-18879332 0.0001 43_[+1]_69 chr3L:9853284-9853404 0.00011 14_[+1]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCWGCA width=8 seqs=26 chr3L:7134992-7135112 ( 27) CAGCAGCA 1 chr2L:13545868-13545988 ( 32) CAGCAGCA 1 chr3R:28914234-28914354 ( 67) CAGCAGCA 1 chr2L:13665433-13665553 ( 88) CAGCGGCA 1 chrX:18544827-18544947 ( 89) CAGCCGCA 1 chr3L:8360401-8360521 ( 87) CAGCGGCA 1 chr3L:16259596-16259716 ( 18) CAGCTGCA 1 chr2L:3557647-3557767 ( 29) CCGCAGCA 1 chr3R:10589322-10589442 ( 13) CCGCTGCA 1 chr3R:22140169-22140289 ( 47) CCGCTGCA 1 chrX:16723753-16723873 ( 29) CAGGAGCA 1 chrX:8730456-8730576 ( 34) GAGCTGCA 1 chr3L:1064550-1064670 ( 111) GAGCGGCA 1 chr2R:10057988-10058108 ( 67) GAGCTGCA 1 chr2L:20381463-20381583 ( 44) GCGCAGCA 1 chr2R:18343067-18343187 ( 113) CTGCAGCA 1 chr3L:2800437-2800557 ( 57) CAGGTGCA 1 chr3L:6155279-6155399 ( 60) CTGCCGCA 1 chr3L:7993708-7993828 ( 40) AAGCAGCA 1 chr3L:8013445-8013565 ( 59) AAGCAGCA 1 chrX:11123673-11123793 ( 18) CTGCTGCA 1 chr2R:7370405-7370525 ( 5) AAGCAGCA 1 chr2R:17439598-17439718 ( 61) GAGGAGCA 1 chr2R:16836463-16836583 ( 23) CAACAGCA 1 chr2R:18879212-18879332 ( 44) CAACAGCA 1 chr3L:9853284-9853404 ( 15) GAGGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 4.1e+000 -156 207 54 -1134 110 -2 -1134 -158 -214 -1134 254 -1134 -1134 244 -4 -1134 56 -43 -46 -36 -1134 -1134 266 -1134 -1134 268 -1134 -1134 156 -1134 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 4.1e+000 0.115385 0.653846 0.230769 0.000000 0.730769 0.153846 0.000000 0.115385 0.076923 0.000000 0.923077 0.000000 0.000000 0.846154 0.153846 0.000000 0.500000 0.115385 0.115385 0.269231 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGCA MEME-1 regular expression -------------------------------------------------------------------------------- [CG]AGC[AT]GCA -------------------------------------------------------------------------------- Time 7.54 secs. ******************************************************************************** ******************************************************************************** MOTIF SDGCGCGR MEME-2 width = 8 sites = 15 llr = 152 E-value = 3.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SDGCGCGR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::::5 pos.-specific C 51:a:83: probability G 53a:a275 matrix T :4:::::: bits 2.7 *** 2.4 *** 2.1 *** 1.9 ***** Relative 1.6 * ***** Entropy 1.3 * ***** (14.6 bits) 1.1 * ****** 0.8 * ****** 0.5 * ****** 0.3 * ****** 0.0 -------- Multilevel GTGCGCGA consensus CA GCG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDGCGCGR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13665433-13665553 77 3.93e-07 TTTTGTTGCT GGGCGCGG CAGCAGCGGC chr2R:17439598-17439718 52 7.79e-07 ACAAAGGGGG CGGCGCGG GGAGGAGCAT chr3L:13212986-13213106 12 1.63e-06 AAGAGGTCAA GTGCGCGG GTAAATGTTG chrX:17518445-17518565 106 2.47e-06 AATATCCATT CTGCGCGG TATGATA chr3R:8349943-8350063 50 8.40e-06 AGAACGCAGA GTGCGCGA CGCTAAAACA chrX:10585147-10585267 57 1.44e-05 GTATTTAATT GAGCGCGA CACGCAGTGA chr2R:10057988-10058108 58 1.44e-05 AAAAGAAAAA GAGCGCGA GGAGCTGCAA chr2R:15664677-15664797 52 1.66e-05 aCCCAACGAG CAGCGCGA ACAAATAAAA chr2L:608268-608388 103 1.78e-05 TTTTTACGTT GGGCGCCA TATATTTTGA chr3R:28544817-28544937 9 2.02e-05 CTGTTTTA CAGCGCCG CTAACCATCG chrX:9684226-9684346 38 2.46e-05 taatttaGCC GCGCGCGA GTGGACAGCG chrX:7177299-7177419 27 2.46e-05 AAATCACTTT GTGCGCCA TTGGTAGTTC chr2L:19359945-19360065 25 2.46e-05 CTCTACTAGG CTGCGGGG aaaacaaaaa chr2L:13545868-13545988 78 3.75e-05 aaaatacaaa CGGCGGCG ACTGGTTTGA chr2R:11749539-11749659 6 3.93e-05 GTACA CTGCGGGA AATGTTCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDGCGCGR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13665433-13665553 3.9e-07 76_[+2]_36 chr2R:17439598-17439718 7.8e-07 51_[+2]_61 chr3L:13212986-13213106 1.6e-06 11_[+2]_101 chrX:17518445-17518565 2.5e-06 105_[+2]_7 chr3R:8349943-8350063 8.4e-06 49_[+2]_63 chrX:10585147-10585267 1.4e-05 56_[+2]_56 chr2R:10057988-10058108 1.4e-05 57_[+2]_55 chr2R:15664677-15664797 1.7e-05 51_[+2]_61 chr2L:608268-608388 1.8e-05 102_[+2]_10 chr3R:28544817-28544937 2e-05 8_[+2]_104 chrX:9684226-9684346 2.5e-05 37_[+2]_75 chrX:7177299-7177419 2.5e-05 26_[+2]_86 chr2L:19359945-19360065 2.5e-05 24_[+2]_88 chr2L:13545868-13545988 3.7e-05 77_[+2]_35 chr2R:11749539-11749659 3.9e-05 5_[+2]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDGCGCGR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SDGCGCGR width=8 seqs=15 chr2L:13665433-13665553 ( 77) GGGCGCGG 1 chr2R:17439598-17439718 ( 52) CGGCGCGG 1 chr3L:13212986-13213106 ( 12) GTGCGCGG 1 chrX:17518445-17518565 ( 106) CTGCGCGG 1 chr3R:8349943-8350063 ( 50) GTGCGCGA 1 chrX:10585147-10585267 ( 57) GAGCGCGA 1 chr2R:10057988-10058108 ( 58) GAGCGCGA 1 chr2R:15664677-15664797 ( 52) CAGCGCGA 1 chr2L:608268-608388 ( 103) GGGCGCCA 1 chr3R:28544817-28544937 ( 9) CAGCGCCG 1 chrX:9684226-9684346 ( 38) GCGCGCGA 1 chrX:7177299-7177419 ( 27) GTGCGCCA 1 chr2L:19359945-19360065 ( 25) CTGCGGGG 1 chr2L:13545868-13545988 ( 78) CGGCGGCG 1 chr2R:11749539-11749659 ( 6) CTGCGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDGCGCGR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 3.2e+001 -1055 158 175 -1055 -35 -122 75 21 -1055 -1055 266 -1055 -1055 268 -1055 -1055 -1055 -1055 266 -1055 -1055 236 33 -1055 -1055 78 221 -1055 65 -1055 156 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDGCGCGR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.2e+001 0.000000 0.466667 0.533333 0.000000 0.266667 0.066667 0.266667 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.266667 0.733333 0.000000 0.533333 0.000000 0.466667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SDGCGCGR MEME-2 regular expression -------------------------------------------------------------------------------- [GC][TAG]GCG[CG][GC][AG] -------------------------------------------------------------------------------- Time 13.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GCMCAGTG MEME-3 width = 8 sites = 12 llr = 123 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCMCAGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::6:8::: pos.-specific C 1a4912:: probability G 9::1:83a matrix T ::::1:8: bits 2.7 * * 2.4 * * 2.1 ** * * 1.9 ** * * * Relative 1.6 ** * * * Entropy 1.3 ** * * * (14.7 bits) 1.1 **** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACAGTG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCAGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:723913-724033 37 1.80e-06 CATTTACTCT GCCCAGTG GATTAGGGAT chr3R:30284090-30284210 2 6.53e-06 T GCACAGTG GTTGCAAACA chr3L:16762264-16762384 2 6.53e-06 A GCACAGTG GTTGGAATGG chrX:13948306-13948426 24 6.53e-06 TTACTAATAC GCACAGTG TGACCGTTGA chrX:17542875-17542995 21 8.33e-06 ATCTCAAAAT GCACAGGG CAAAAAAAAA chr2L:10759719-10759839 2 8.33e-06 G GCACAGGG ATTGCATTTT chr3R:30357210-30357330 24 9.15e-06 TGCATTGTGG GCCCCGTG CAAATATTAA chrX:20166778-20166898 31 1.39e-05 TAACGCCCAA GCCCACGG GTAAGTATCG chrX:11123673-11123793 27 1.77e-05 ACTGCTGCAC GCACACTG CTTCGTTCTT chr3L:5128402-5128522 104 2.57e-05 CGCAACACGT GCCGAGTG CGATGCAAA chr3R:18998506-18998626 106 2.57e-05 GATTCGTTTT CCCCAGTG TATCCGT chr3R:27177645-27177765 3 3.22e-05 AA GCACTGTG GGAAAATGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCAGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:723913-724033 1.8e-06 36_[+3]_76 chr3R:30284090-30284210 6.5e-06 1_[+3]_111 chr3L:16762264-16762384 6.5e-06 1_[+3]_111 chrX:13948306-13948426 6.5e-06 23_[+3]_89 chrX:17542875-17542995 8.3e-06 20_[+3]_92 chr2L:10759719-10759839 8.3e-06 1_[+3]_111 chr3R:30357210-30357330 9.2e-06 23_[+3]_89 chrX:20166778-20166898 1.4e-05 30_[+3]_82 chrX:11123673-11123793 1.8e-05 26_[+3]_86 chr3L:5128402-5128522 2.6e-05 103_[+3]_9 chr3R:18998506-18998626 2.6e-05 105_[+3]_7 chr3R:27177645-27177765 3.2e-05 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCAGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCMCAGTG width=8 seqs=12 chr2L:723913-724033 ( 37) GCCCAGTG 1 chr3R:30284090-30284210 ( 2) GCACAGTG 1 chr3L:16762264-16762384 ( 2) GCACAGTG 1 chrX:13948306-13948426 ( 24) GCACAGTG 1 chrX:17542875-17542995 ( 21) GCACAGGG 1 chr2L:10759719-10759839 ( 2) GCACAGGG 1 chr3R:30357210-30357330 ( 24) GCCCCGTG 1 chrX:20166778-20166898 ( 31) GCCCACGG 1 chrX:11123673-11123793 ( 27) GCACACTG 1 chr3L:5128402-5128522 ( 104) GCCGAGTG 1 chr3R:18998506-18998626 ( 106) CCCCAGTG 1 chr3R:27177645-27177765 ( 3) GCACTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCAGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 5.6e+003 -1023 -90 253 -1023 -1023 268 -1023 -1023 78 142 -1023 -1023 -1023 256 -93 -1023 129 -90 -1023 -205 -1023 10 239 -1023 -1023 -1023 66 112 -1023 -1023 266 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCAGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.6e+003 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.583333 0.416667 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.833333 0.083333 0.000000 0.083333 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCMCAGTG MEME-3 regular expression -------------------------------------------------------------------------------- GC[AC]CAG[TG]G -------------------------------------------------------------------------------- Time 20.07 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGAGCSA MEME-4 width = 8 sites = 7 llr = 80 E-value = 4.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGAGCSA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::a pos.-specific C a:::1a6: probability G ::a:9:4: matrix T :a:::::: bits 2.7 * * * 2.4 * * * 2.1 * * ** 1.9 * * ** Relative 1.6 ******** Entropy 1.3 ******** (16.4 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGAGCCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCSA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7879674-7879794 104 3.84e-06 ATATTCGATA CTGAGCCA ATCGAAGAG chr2L:13665433-13665553 2 3.84e-06 T CTGAGCCA AGTGAGTTTT chr2R:15046977-15047097 62 3.84e-06 GCAGGATGTT CTGAGCCA AATAATGGTA chrX:3045550-3045670 70 3.84e-06 ATATATTAAA CTGAGCCA GATATACAAA chr3L:20582473-20582593 5 7.75e-06 AATA CTGAGCGA TAAATAGAGA chrX:19485198-19485318 96 7.75e-06 tgttcttGTT CTGAGCGA GAGAGAACCA chr2R:10057988-10058108 10 1.54e-05 TTGTTTCAT CTGACCGA CGAACGAACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCSA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7879674-7879794 3.8e-06 103_[+4]_9 chr2L:13665433-13665553 3.8e-06 1_[+4]_111 chr2R:15046977-15047097 3.8e-06 61_[+4]_51 chrX:3045550-3045670 3.8e-06 69_[+4]_43 chr3L:20582473-20582593 7.8e-06 4_[+4]_108 chrX:19485198-19485318 7.8e-06 95_[+4]_17 chr2R:10057988-10058108 1.5e-05 9_[+4]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCSA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGAGCSA width=8 seqs=7 chr2L:7879674-7879794 ( 104) CTGAGCCA 1 chr2L:13665433-13665553 ( 2) CTGAGCCA 1 chr2R:15046977-15047097 ( 62) CTGAGCCA 1 chrX:3045550-3045670 ( 70) CTGAGCCA 1 chr3L:20582473-20582593 ( 5) CTGAGCGA 1 chrX:19485198-19485318 ( 96) CTGAGCGA 1 chr2R:10057988-10058108 ( 10) CTGACCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCSA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 4.2e+003 -945 268 -945 -945 -945 -945 -945 153 -945 -945 266 -945 155 -945 -945 -945 -945 -12 243 -945 -945 268 -945 -945 -945 188 143 -945 155 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCSA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.2e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCSA MEME-4 regular expression -------------------------------------------------------------------------------- CTGAGC[CG]A -------------------------------------------------------------------------------- Time 26.31 secs. ******************************************************************************** ******************************************************************************** MOTIF KCGCCGGC MEME-5 width = 8 sites = 2 llr = 27 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCGCCGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:aa::a probability G 5:a::aa: matrix T 5::::::: bits 2.7 ******* 2.4 ******* 2.1 ******* 1.9 ******* Relative 1.6 ******* Entropy 1.3 ******* (19.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCGGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:27069337-27069457 31 3.79e-07 TGTTATTATA GCGCCGGC TGCTGTTGTT chrX:13754720-13754840 3 1.20e-06 AT TCGCCGGC AGTTTTTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:27069337-27069457 3.8e-07 30_[+5]_82 chrX:13754720-13754840 1.2e-06 2_[+5]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCGCCGGC width=8 seqs=2 chr3R:27069337-27069457 ( 31) GCGCCGGC 1 chrX:13754720-13754840 ( 3) TCGCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.3e+004 -765 -765 165 53 -765 268 -765 -765 -765 -765 265 -765 -765 268 -765 -765 -765 268 -765 -765 -765 -765 265 -765 -765 -765 265 -765 -765 268 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+004 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCGCCGGC MEME-5 regular expression -------------------------------------------------------------------------------- [GT]CGCCGGC -------------------------------------------------------------------------------- Time 32.54 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5112563-5112683 2.11e-01 120 chr2R:17499297-17499417 6.85e-01 120 chr2R:8318264-8318384 6.24e-01 120 chr2L:5288330-5288450 9.77e-01 120 chr2R:7370405-7370525 1.15e-02 4_[+1(6.53e-05)]_108 chr3L:13178330-13178450 9.04e-01 120 chr3L:10757110-10757230 9.44e-01 120 chr2R:21847830-21847950 2.84e-01 120 chr3L:15229586-15229706 7.42e-01 120 chrX:19485198-19485318 1.22e-02 95_[+4(7.75e-06)]_17 chr3L:17577033-17577153 6.24e-01 120 chr3R:27177645-27177765 1.93e-02 2_[+3(3.22e-05)]_110 chr2L:7923763-7923883 9.95e-01 120 chr3R:24970780-24970900 7.85e-01 120 chr2L:2485407-2485527 1.00e+00 120 chr3L:8822356-8822476 2.41e-02 120 chr2L:5372713-5372833 9.08e-01 120 chr2R:8995106-8995226 2.07e-01 120 chr3R:30259691-30259811 9.69e-01 120 chr3R:30265028-30265148 6.75e-01 120 chr3R:10533303-10533423 3.68e-01 120 chr3R:24953300-24953420 5.05e-01 120 chrX:17355907-17356027 9.78e-01 120 chr2L:11307209-11307329 9.02e-01 120 chrX:10202715-10202835 6.71e-01 120 chrX:18800298-18800418 5.05e-01 120 chrX:16723753-16723873 3.35e-02 28_[+1(2.39e-05)]_84 chr3R:10829887-10830007 5.50e-01 120 chr3L:10968771-10968891 9.92e-01 120 chr3L:21720993-21721113 4.83e-02 120 chr2R:19968856-19968976 4.97e-01 120 chr2L:15386852-15386972 9.99e-01 120 chrX:19173097-19173217 9.82e-01 120 chr3L:11382729-11382849 5.12e-01 120 chrX:11123673-11123793 8.27e-04 17_[+1(6.53e-05)]_1_[+3(1.77e-05)]_\ 86 chr2L:3582851-3582971 5.02e-01 120 chr2L:646667-646787 9.78e-01 120 chr3R:29847273-29847393 3.26e-01 120 chr3L:3106293-3106413 6.39e-02 120 chrX:17488522-17488642 2.30e-01 120 chr3L:6447849-6447969 2.82e-01 120 chr2L:10759719-10759839 2.62e-02 1_[+3(8.33e-06)]_111 chr3L:14350950-14351070 4.73e-01 120 chr3R:8958452-8958572 9.32e-01 120 chr3L:11634665-11634785 3.56e-01 120 chr2R:8749899-8750019 3.63e-01 120 chr3L:9853284-9853404 6.02e-03 120 chr3L:10387683-10387803 1.28e-02 120 chr3L:16259596-16259716 3.69e-03 17_[+1(1.11e-05)]_95 chrX:6745685-6745805 4.14e-02 2_[+4(7.71e-05)]_110 chr2L:20146359-20146479 7.28e-01 120 chr3R:13916713-13916833 9.94e-01 120 chr2L:5751541-5751661 5.68e-01 120 chr3L:11136496-11136616 8.64e-01 120 chr3L:20990400-20990520 9.99e-01 120 chr3R:14373945-14374065 9.70e-01 120 chr3R:30326743-30326863 2.73e-01 120 chrX:5020160-5020280 1.00e+00 120 chr3R:30357210-30357330 2.53e-03 23_[+3(9.15e-06)]_89 chrX:18537509-18537629 1.42e-01 13_[+2(7.99e-05)]_99 chr2R:19806619-19806739 9.47e-01 120 chr3L:4731832-4731952 9.99e-01 120 chr3R:5095499-5095619 3.47e-01 120 chr2R:23567394-23567514 6.62e-01 120 chr2L:2432969-2433089 2.36e-01 120 chrX:3045550-3045670 1.22e-03 69_[+4(3.84e-06)]_43 chrX:9399971-9400091 5.99e-01 120 chr3R:27069337-27069457 6.46e-05 30_[+5(3.79e-07)]_82 chr3L:18078709-18078829 4.49e-01 120 chr3L:3709492-3709612 7.95e-01 120 chr3R:26502230-26502350 7.56e-01 120 chr3L:16174925-16175045 2.30e-01 120 chr3R:29280707-29280827 9.46e-01 120 chr2L:14529396-14529516 5.72e-01 120 chr3L:15220506-15220626 8.02e-01 120 chr2L:21005569-21005689 1.00e+00 120 chr2R:7848704-7848824 9.19e-01 120 chr2L:11069682-11069802 7.22e-01 120 chr3L:484983-485103 6.37e-02 120 chr2R:15000534-15000654 3.68e-01 120 chr2L:19156080-19156200 1.32e-01 120 chr2L:7899269-7899389 1.00e+00 120 chrX:13948306-13948426 3.40e-02 23_[+3(6.53e-06)]_89 chr3L:20592689-20592809 8.74e-01 120 chrX:3010116-3010236 6.59e-01 120 chrX:4442658-4442778 8.36e-01 120 chr3L:20952185-20952305 6.89e-01 120 chr3L:18057934-18058054 6.40e-01 120 chr2L:20916956-20917076 5.38e-01 120 chr3L:3444396-3444516 7.09e-01 120 chr2L:15390594-15390714 9.99e-01 120 chr3L:1711339-1711459 1.80e-01 120 chr2R:15046977-15047097 4.62e-03 61_[+4(3.84e-06)]_51 chrX:7540881-7541001 2.81e-01 120 chrX:5300994-5301114 4.52e-03 [+3(6.53e-06)]_63_[+3(6.53e-06)]_41 chr3L:13109488-13109608 3.35e-01 120 chr3R:22140169-22140289 3.78e-02 46_[+1(2.00e-05)]_66 chrX:361560-361680 3.26e-01 120 chrX:2336609-2336729 9.09e-01 120 chr3R:21948765-21948885 2.97e-01 120 chr3L:11448515-11448635 4.47e-01 120 chr2R:14076231-14076351 8.94e-01 120 chr3L:6355185-6355305 1.84e-01 120 chr3R:8932858-8932978 1.00e+00 120 chr3L:20582473-20582593 1.91e-02 4_[+4(7.75e-06)]_108 chr3L:2553200-2553320 5.01e-01 120 chr3R:29091683-29091803 3.36e-01 120 chrX:14017534-14017654 8.44e-01 120 chr3R:18998506-18998626 4.58e-02 105_[+3(2.57e-05)]_7 chr3L:10923128-10923248 7.49e-01 120 chr2R:10057988-10058108 2.25e-05 9_[+4(1.54e-05)]_40_[+2(1.44e-05)]_\ 1_[+1(3.14e-05)]_46 chr2R:21495430-21495550 4.68e-01 120 chr2L:5479286-5479406 7.74e-01 120 chr3L:8360401-8360521 1.80e-04 63_[+1(7.66e-05)]_15_[+1(1.11e-05)]_\ 26 chr2L:3557647-3557767 7.46e-03 28_[+1(1.28e-05)]_2_[+1(6.92e-05)]_\ 74 chr2L:18122253-18122373 9.55e-01 120 chr3L:2800437-2800557 2.92e-02 56_[+1(4.44e-05)]_56 chr2L:14236269-14236389 9.97e-01 120 chr2L:8919783-8919903 9.12e-01 120 chr3R:7025360-7025480 2.46e-01 120 chr4:60415-60535 1.00e+00 120 chr2L:21006727-21006847 5.94e-01 120 chrX:8747799-8747919 6.52e-01 120 chr2R:11544127-11544247 3.49e-01 120 chr3L:16762264-16762384 8.05e-02 1_[+3(6.53e-06)]_111 chr2L:14569463-14569583 9.86e-01 120 chr2R:18215420-18215540 1.00e+00 120 chr3L:14610601-14610721 8.48e-01 120 chrX:17542875-17542995 6.83e-03 20_[+3(8.33e-06)]_92 chr2L:13146382-13146502 9.88e-01 120 chr2R:23638007-23638127 1.35e-01 120 chr3R:22184210-22184330 6.00e-01 120 chr3L:21122703-21122823 9.95e-01 120 chr3L:11368503-11368623 1.68e-02 74_[+5(9.19e-05)]_38 chr3R:28914234-28914354 7.82e-04 66_[+1(3.77e-06)]_46 chr2L:11074057-11074177 7.73e-01 120 chr3L:1064550-1064670 5.71e-03 110_[+1(3.14e-05)]_2 chrX:18544827-18544947 7.76e-03 88_[+1(1.11e-05)]_24 chr2L:13545868-13545988 4.03e-06 31_[+1(3.77e-06)]_38_[+2(3.75e-05)]_\ 35 chr3L:3442220-3442340 2.28e-01 120 chr3L:766445-766565 3.27e-01 120 chr2R:18926601-18926721 7.88e-01 120 chr2L:723913-724033 4.83e-03 36_[+3(1.80e-06)]_76 chrX:14073680-14073800 9.79e-01 120 chr2L:11155846-11155966 1.16e-01 120 chr2R:15664677-15664797 7.66e-04 51_[+2(1.66e-05)]_61 chr3R:30843222-30843342 8.95e-01 120 chr2L:15909323-15909443 8.52e-02 120 chr2L:19359945-19360065 8.42e-03 24_[+2(2.46e-05)]_88 chr2R:18343067-18343187 2.52e-02 112_[+1(3.70e-05)] chr3R:31312447-31312567 4.87e-01 120 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chr3R:9389149-9389269 2.71e-01 120 chr3L:12915629-12915749 4.13e-01 120 chr2L:7323098-7323218 1.00e+00 120 chr2L:4211397-4211517 9.96e-01 120 chr2L:13665433-13665553 9.12e-10 1_[+4(3.84e-06)]_67_[+2(3.93e-07)]_\ 3_[+1(1.11e-05)]_25 chrX:12750420-12750540 5.97e-01 120 chr3L:20988987-20989107 4.00e-01 120 chrX:13754720-13754840 1.38e-03 2_[+5(1.20e-06)]_110 chr3L:10913387-10913507 6.36e-01 120 chr3L:14463979-14464099 8.95e-01 120 chr2L:7879674-7879794 2.60e-03 103_[+4(3.84e-06)]_9 chr3L:20632483-20632603 9.28e-01 120 chr3R:10589322-10589442 9.09e-03 12_[+1(2.00e-05)]_100 chr3L:2808472-2808592 1.79e-02 69_[+5(4.75e-05)]_43 chr2L:16591540-16591660 8.47e-01 120 chr2R:11749539-11749659 1.12e-02 5_[+2(3.93e-05)]_107 chrX:7177299-7177419 1.16e-02 26_[+2(2.46e-05)]_86 chrX:8730456-8730576 7.04e-02 33_[+1(3.14e-05)]_79 chr2L:7424357-7424477 9.69e-01 120 chr3L:6085238-6085358 7.45e-01 120 chr2L:1456963-1457083 3.00e-01 120 chr3L:2386557-2386677 1.00e+00 120 chr3R:29055859-29055979 7.35e-01 120 chrX:9684226-9684346 7.52e-03 37_[+2(2.46e-05)]_75 chr2R:15745249-15745369 9.79e-01 120 chr3L:13212986-13213106 6.48e-04 11_[+2(1.63e-06)]_101 chr2R:8195172-8195292 8.67e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************