******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3407.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:1057652-1057772 1.0000 120 chrX:10540588-10540708 1.0000 120 chr3R:6411516-6411636 1.0000 120 chr3R:6429074-6429194 1.0000 120 chr3L:7982061-7982181 1.0000 120 chr2L:1422072-1422192 1.0000 120 chr2L:165642-165762 1.0000 120 chrX:7337569-7337689 1.0000 120 chrX:12739877-12739997 1.0000 120 chrX:12716974-12717094 1.0000 120 chr3R:6432460-6432580 1.0000 120 chrX:12733979-12734099 1.0000 120 chr2R:7373922-7374042 1.0000 120 chr3R:29069812-29069932 1.0000 120 chrX:12744097-12744217 1.0000 120 chr3R:6428227-6428347 1.0000 120 chrX:7602203-7602323 1.0000 120 chr3L:10525832-10525952 1.0000 120 chr2L:3545221-3545341 1.0000 120 chr2L:1068811-1068931 1.0000 120 chr3L:22837712-22837832 1.0000 120 chrX:12206355-12206475 1.0000 120 chr3L:7988193-7988313 1.0000 120 chrX:19900124-19900244 1.0000 120 chrX:17774100-17774220 1.0000 120 chr3R:21633862-21633982 1.0000 120 chrX:10539545-10539665 1.0000 120 chr2L:1399531-1399651 1.0000 120 chr2R:9402960-9403080 1.0000 120 chrX:12750684-12750804 1.0000 120 chr2R:13038710-13038830 1.0000 120 chr2R:24315395-24315515 1.0000 120 chrX:12734516-12734636 1.0000 120 chr3R:6414767-6414887 1.0000 120 chrX:12716109-12716229 1.0000 120 chr3R:6426278-6426398 1.0000 120 chrX:7300522-7300642 1.0000 120 chr2R:13038976-13039096 1.0000 120 chrX:12742490-12742610 1.0000 120 chr2R:21475055-21475175 1.0000 120 chr2L:8825211-8825331 1.0000 120 chrX:12736236-12736356 1.0000 120 chr2R:6594964-6595084 1.0000 120 chr3R:19182959-19183079 1.0000 120 chr2R:13305674-13305794 1.0000 120 chr2L:10497548-10497668 1.0000 120 chr3R:8155885-8156005 1.0000 120 chr3L:20275993-20276113 1.0000 120 chr3L:4615203-4615323 1.0000 120 chr2L:470052-470172 1.0000 120 chrX:18238037-18238157 1.0000 120 chr2R:7951917-7952037 1.0000 120 chr2R:10540319-10540439 1.0000 120 chr2L:14235123-14235243 1.0000 120 chr2L:1735279-1735399 1.0000 120 chr2L:12509607-12509727 1.0000 120 chr2L:19370232-19370352 1.0000 120 chr3L:19077368-19077488 1.0000 120 chr2L:20852198-20852318 1.0000 120 chr3L:4193885-4194005 1.0000 120 chr3L:7859864-7859984 1.0000 120 chr2R:21848651-21848771 1.0000 120 chr2L:1094824-1094944 1.0000 120 chrX:7299733-7299853 1.0000 120 chrX:15497866-15497986 1.0000 120 chrX:15893945-15894065 1.0000 120 chr3L:8379327-8379447 1.0000 120 chr3R:16330149-16330269 1.0000 120 chr2L:20327529-20327649 1.0000 120 chr2R:16809956-16810076 1.0000 120 chr2R:7167984-7168104 1.0000 120 chr3R:6432662-6432782 1.0000 120 chrX:17298017-17298137 1.0000 120 chrX:581996-582116 1.0000 120 chr3R:6665438-6665558 1.0000 120 chr2R:18667129-18667249 1.0000 120 chr2R:12729329-12729449 1.0000 120 chr2L:16451983-16452103 1.0000 120 chr3L:16429599-16429719 1.0000 120 chr3R:10521358-10521478 1.0000 120 chr2L:17572986-17573106 1.0000 120 chr2L:5338771-5338891 1.0000 120 chr2R:20063359-20063479 1.0000 120 chr3L:10831182-10831302 1.0000 120 chr2L:3397732-3397852 1.0000 120 chrX:13820527-13820647 1.0000 120 chr3R:30106246-30106366 1.0000 120 chr3L:5992380-5992500 1.0000 120 chr3R:9889087-9889207 1.0000 120 chr2R:8683430-8683550 1.0000 120 chr2L:1118263-1118383 1.0000 120 chr2L:12049263-12049383 1.0000 120 chr3R:14744472-14744592 1.0000 120 chr3R:29548932-29549052 1.0000 120 chr3R:5016435-5016555 1.0000 120 chrX:13645182-13645302 1.0000 120 chrX:2462112-2462232 1.0000 120 chrX:3024681-3024801 1.0000 120 chr3R:5031996-5032116 1.0000 120 chr3L:20507690-20507810 1.0000 120 chr3R:13548173-13548293 1.0000 120 chr2L:5338083-5338203 1.0000 120 chr3L:4376091-4376211 1.0000 120 chr3R:12250413-12250533 1.0000 120 chr3L:13032282-13032402 1.0000 120 chr2R:22540004-22540124 1.0000 120 chr3R:29480063-29480183 1.0000 120 chr2L:3121831-3121951 1.0000 120 chrX:18533397-18533517 1.0000 120 chr3L:19073330-19073450 1.0000 120 chr2L:18496961-18497081 1.0000 120 chr2R:8045730-8045850 1.0000 120 chr3L:754795-754915 1.0000 120 chr3L:1168562-1168682 1.0000 120 chr3L:705259-705379 1.0000 120 chr3L:11516391-11516511 1.0000 120 chr2R:10485588-10485708 1.0000 120 chr3L:7961312-7961432 1.0000 120 chr3L:11247569-11247689 1.0000 120 chr3L:11003065-11003185 1.0000 120 chr2R:14073625-14073745 1.0000 120 chr3L:16010349-16010469 1.0000 120 chrX:10115657-10115777 1.0000 120 chr3L:8683896-8684016 1.0000 120 chr2R:13474930-13475050 1.0000 120 chr3L:8925818-8925938 1.0000 120 chr2R:22200021-22200141 1.0000 120 chr2L:4475522-4475642 1.0000 120 chr3L:15706327-15706447 1.0000 120 chr2L:7292143-7292263 1.0000 120 chr2L:8552623-8552743 1.0000 120 chr2L:19949738-19949858 1.0000 120 chr3R:30718643-30718763 1.0000 120 chr3R:6203169-6203289 1.0000 120 chr3R:15677762-15677882 1.0000 120 chrX:2191997-2192117 1.0000 120 chr2L:20431361-20431481 1.0000 120 chr3L:3080695-3080815 1.0000 120 chr2R:13041943-13042063 1.0000 120 chr2R:17274156-17274276 1.0000 120 chr2L:3888334-3888454 1.0000 120 chr3R:25544055-25544175 1.0000 120 chr3L:17993427-17993547 1.0000 120 chr2L:12465802-12465922 1.0000 120 chrX:19375552-19375672 1.0000 120 chr3L:10741298-10741418 1.0000 120 chr2R:22666708-22666828 1.0000 120 chr3L:16640609-16640729 1.0000 120 chr3R:6182659-6182779 1.0000 120 chr3L:18198304-18198424 1.0000 120 chr3R:28552373-28552493 1.0000 120 chr3L:4272293-4272413 1.0000 120 chr2R:7756398-7756518 1.0000 120 chr3L:14354648-14354768 1.0000 120 chr3R:4975327-4975447 1.0000 120 chr3L:11273705-11273825 1.0000 120 chrX:17473446-17473566 1.0000 120 chr2R:22387656-22387776 1.0000 120 chr2R:14787904-14788024 1.0000 120 chr3R:15983637-15983757 1.0000 120 chr3R:18785924-18786044 1.0000 120 chr3R:24301569-24301689 1.0000 120 chr2R:11403203-11403323 1.0000 120 chr2R:6788353-6788473 1.0000 120 chr2L:14245580-14245700 1.0000 120 chr3R:26908870-26908990 1.0000 120 chr2L:18717479-18717599 1.0000 120 chr2R:13152003-13152123 1.0000 120 chr2L:7528189-7528309 1.0000 120 chr2R:9309640-9309760 1.0000 120 chr3R:21263332-21263452 1.0000 120 chr2L:12641577-12641697 1.0000 120 chr3R:19067995-19068115 1.0000 120 chr3L:18290510-18290630 1.0000 120 chr3L:7592238-7592358 1.0000 120 chrX:18101195-18101315 1.0000 120 chr2L:7266107-7266227 1.0000 120 chr3L:1690830-1690950 1.0000 120 chrX:7579862-7579982 1.0000 120 chr2R:18567350-18567470 1.0000 120 chrX:4609889-4610009 1.0000 120 chr3R:31608413-31608533 1.0000 120 chr2L:6252391-6252511 1.0000 120 chrX:362247-362367 1.0000 120 chr2L:11341075-11341195 1.0000 120 chr3L:19847123-19847243 1.0000 120 chr3L:20494081-20494201 1.0000 120 chr2L:1738157-1738277 1.0000 120 chr2R:17272589-17272709 1.0000 120 chr3R:31309395-31309515 1.0000 120 chr3R:29699354-29699474 1.0000 120 chr3R:29083976-29084096 1.0000 120 chr2L:6818474-6818594 1.0000 120 chr3R:21834375-21834495 1.0000 120 chr3R:25885265-25885385 1.0000 120 chr3L:12045571-12045691 1.0000 120 chr3R:23817934-23818054 1.0000 120 chr3L:8604471-8604591 1.0000 120 chr2L:7525423-7525543 1.0000 120 chr3R:15093057-15093177 1.0000 120 chr3R:9390337-9390457 1.0000 120 chrX:1387337-1387457 1.0000 120 chr2L:7277060-7277180 1.0000 120 chr3R:29757329-29757449 1.0000 120 chrX:17782174-17782294 1.0000 120 chr2L:8080788-8080908 1.0000 120 chr2R:23180959-23181079 1.0000 120 chr3L:14671714-14671834 1.0000 120 chr2R:14109813-14109933 1.0000 120 chrX:2653650-2653770 1.0000 120 chr3L:8347490-8347610 1.0000 120 chrX:11823209-11823329 1.0000 120 chr2R:20126190-20126310 1.0000 120 chr2L:856133-856253 1.0000 120 chr2L:10505035-10505155 1.0000 120 chr3L:11540376-11540496 1.0000 120 chr3L:18242256-18242376 1.0000 120 chrX:20506085-20506205 1.0000 120 chr2R:22546786-22546906 1.0000 120 chr3R:26539306-26539426 1.0000 120 chr2L:1646710-1646830 1.0000 120 chr3R:18438344-18438464 1.0000 120 chr3R:23947147-23947267 1.0000 120 chr2R:14216983-14217103 1.0000 120 chr2L:5303692-5303812 1.0000 120 chr3R:20263839-20263959 1.0000 120 chr2R:12997147-12997267 1.0000 120 chr3R:17828798-17828918 1.0000 120 chr2R:12007877-12007997 1.0000 120 chr2R:19860399-19860519 1.0000 120 chr2R:9543691-9543811 1.0000 120 chr3R:26900099-26900219 1.0000 120 chr2L:6283426-6283546 1.0000 120 chr3R:6241403-6241523 1.0000 120 chr3R:13448491-13448611 1.0000 120 chr2R:20126389-20126509 1.0000 120 chr3L:11491933-11492053 1.0000 120 chr3R:21271353-21271473 1.0000 120 chr3R:24293290-24293410 1.0000 120 chrX:18774990-18775110 1.0000 120 chr3R:10567002-10567122 1.0000 120 chr3L:905150-905270 1.0000 120 chr3R:20259570-20259690 1.0000 120 chr2L:7566799-7566919 1.0000 120 chr3R:15670666-15670786 1.0000 120 chr2L:117883-118003 1.0000 120 chr2L:161934-162054 1.0000 120 chr3L:14328567-14328687 1.0000 120 chrX:10582188-10582308 1.0000 120 chr3R:30767231-30767351 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG3407/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3407.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.303 C 0.205 G 0.204 T 0.288 Background letter frequencies (from file dataset with add-one prior applied): A 0.303 C 0.205 G 0.204 T 0.288 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RYAAACAA MEME-1 width = 8 sites = 181 llr = 1106 E-value = 1.9e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif RYAAACAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4289a:a5 pos.-specific C :421:7:1 probability G 6::::::2 matrix T :4:::3:1 bits 2.3 2.1 1.8 * * 1.6 * * Relative 1.4 ** * Entropy 1.1 ***** (8.8 bits) 0.9 * ***** 0.7 * ***** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GTAAACAA consensus AC T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:161934-162054 16 2.19e-05 TCAATTATAA GCAAACAA AGCGACGTTG chr3R:25885265-25885385 59 2.19e-05 GATAAGGTCG GCAAACAA AATACTTATC chr2R:11403203-11403323 56 2.19e-05 AAAGTAGAAG GCAAACAA ACTGGATGTT chr3L:3080695-3080815 57 2.19e-05 Caataaataa gcaaacaa acaaacaaac chr3L:16429599-16429719 68 2.19e-05 ATGGTAAATA GCAAACAA CAAATAGTAA chr2L:20327529-20327649 93 2.19e-05 TGACCGTTAG GCAAACAA TGAACAATTC chr3L:8379327-8379447 50 2.19e-05 TGTTTGTCGG GCAAACAA TGGGGCGGAG chr3L:7859864-7859984 49 2.19e-05 AACGTGAAAT GCAAACAA AAAGCTGGAA chr2L:20852198-20852318 64 2.19e-05 TGTTTTCCCA GCAAACAA CGAGCAAGCC chr2L:1399531-1399651 61 2.19e-05 ATGCACCTAA GCAAACAA TCGCGCTCAC chr3R:30767231-30767351 77 5.27e-05 TTTATCGAGT GTAAACAA AGCATAAAAC chr3R:20259570-20259690 14 5.27e-05 TGTTGACGAG GTAAACAA GGCAAACTTA chr3R:20263839-20263959 80 5.27e-05 TGTATCTATA GTAAACAA AAGCGCGTAA chr3R:26539306-26539426 33 5.27e-05 AAATAAACAA GTAAACAA GCCAGCAGCA chr3L:14671714-14671834 87 5.27e-05 AAAGTCGTTT GTAAACAA ATTGCCTAAA chr3R:23817934-23818054 88 5.27e-05 ATGTTTGTTT GTAAACAA AACCAGTTGG chr3L:18198304-18198424 66 5.27e-05 AAACTAAATG GTAAACAA ATATTGGAGC chr3L:17993427-17993547 41 5.27e-05 GGCACGCCAG GTAAACAA GAGAGAAAAA chr2L:3888334-3888454 38 5.27e-05 ACCCCAAAAG GTAAACAA AGAAAATTGT chr2L:19949738-19949858 72 5.27e-05 GAGGGGAAAT GTAAACAA GCTCAAAACT chr3R:29480063-29480183 88 5.27e-05 GACAGCCAAA GTAAACAA AGCCGCATCG chr2L:1735279-1735399 100 5.27e-05 ATGAATGTTT GTAAACAA TTCTGCTAAT chr2R:10540319-10540439 18 5.27e-05 TGCGTAGAAT GTAAACAA ATGAAACTTT chr2R:20126389-20126509 55 6.74e-05 GTGCGACAAA GCAAACAG CTGCACTGAG chr2L:5303692-5303812 94 6.74e-05 GCACACCACA GCAAACAG AGTGGAGTGT chr2R:23180959-23181079 58 6.74e-05 TTTGTAAAAT GCAAACAG AACACGCAAC chr3R:29757329-29757449 59 6.74e-05 GCAAATACGT GCAAACAG CCAAGTAACA chrX:17473446-17473566 42 6.74e-05 tttaCACACA GCAAACAG CAACGACACA chrX:13820527-13820647 34 6.74e-05 AATTACTTCG GCAAACAG TGGGAACCAA chr2R:14073625-14073745 54 8.81e-05 GCAGGTAAGC GTAAACAG TGCCAGCAAA chr3L:1168562-1168682 39 8.81e-05 TTGTAATTGC GTAAACAG ACTCGTACAT chr2R:22546786-22546906 4 1.21e-04 caa aCAAACAA AACAAGTGCC chr3R:15093057-15093177 72 1.21e-04 ATATGTAATA ACAAACAA ACGGCGAGTG chr3L:1690830-1690950 93 1.21e-04 AAACATTTAG ACAAACAA CAGCATACTC chr2L:14245580-14245700 33 1.21e-04 GTCTTTGTAC ACAAACAA AAATATCGCA chr2L:4475522-4475642 49 1.21e-04 GTTTATATAA ACAAACAA TCTGAAGTTT chr3L:7961312-7961432 58 1.21e-04 AATTATGCAC ACAAACAA GCCAAGAGGA chrX:13645182-13645302 5 1.21e-04 AGAT ACAAACAA TTAAAGCAAC chrX:15497866-15497986 3 1.21e-04 GA ACAAACAA AATGAGCAAA chr2L:856133-856253 66 2.12e-04 GCCAAGCTGA ATAAACAA GCCGCAAGTG chr3R:29083976-29084096 2 2.12e-04 A ATAAACAA CGAACGGACC chr2R:18567350-18567470 89 2.12e-04 AATGAGCTTC ATAAACAA GCTGCGCTGC chr2L:12641577-12641697 14 2.12e-04 CGTAAATATC ATAAACAA ATAAGAAGAA chr3R:29548932-29549052 51 2.12e-04 CATTTGCCAT GCAAATAA GCCCGGCTTC chr2R:18667129-18667249 82 2.12e-04 CTAACTTCTG GCCAACAA TAACAATGAG chr3R:16330149-16330269 36 2.12e-04 CATTTCAATG GCCAACAA ATTGAGGCTC chrX:15893945-15894065 36 2.12e-04 TTCATAGCTT GCAAATAA GGGGGGGGGG chr2R:14216983-14217103 78 2.80e-04 TATGCTTATC GCAAACAT ATGGTCACAA chr3R:18438344-18438464 60 2.80e-04 TGCTATGAAT GCAAACAC AAAGTTGTTG chrX:2653650-2653770 87 2.80e-04 CAGTAAAAAC GAAAACAA AGAACTTGGC chr2L:11341075-11341195 46 2.80e-04 AGAAAAGGGT GAAAACAA ATAAGAAGAT chr3R:31608413-31608533 37 2.80e-04 ATATGACCCA GAAAACAA AGTAAATGCG chrX:4609889-4610009 103 2.80e-04 TTGTCGCTGG GAAAACAA CACTCTGGAA chr3R:19067995-19068115 101 2.80e-04 AATGGGTTAA GCAAACAC ACTCTCACAA chr3L:14354648-14354768 52 2.80e-04 TGTTTGTTGA GAAAACAA AGCTAATAGA chr3R:6182659-6182779 6 2.80e-04 AAAAT GAAAACAA AAGCGTGTGA chr2R:17274156-17274276 18 2.80e-04 GCACACCAAT GCAAACAC GATTACAACA chr3R:12250413-12250533 85 2.80e-04 TTATCTGGCG GCAAACAT TTGCCATGAT chr3L:4615203-4615323 74 2.80e-04 TGCTTGCTGA GCAAACAT GGTAGATAAA chr3L:14328567-14328687 44 3.66e-04 CCTCTTCATG GTAAATAA CTCATACTCA chrX:362247-362367 95 3.66e-04 CTGTCGAAAA ACAAACAG AGGAACAAAG chr2L:18717479-18717599 64 3.66e-04 ATTATGTAAG ACAAACAG ACGGGCAGAC chr2R:8045730-8045850 1 3.66e-04 . ACAAACAG CCGTGGAAAC chr3L:4376091-4376211 17 3.66e-04 CTGTTAGCTG GTCAACAA TTTTAAATTA chr3R:30106246-30106366 68 3.66e-04 TTCGTGGAAC GTAAATAA ACAGGGGAAA chr2L:3397732-3397852 98 3.66e-04 GTTTCGACTC GTAAATAA TTACAATTGC chr2R:21848651-21848771 27 3.66e-04 CGTAGGCTAA GTCAACAA CTAATTCAAT chrX:12750684-12750804 113 3.66e-04 AGACACAAAA ACAAACAG chr2R:7373922-7374042 108 3.66e-04 GCAGGGAAAC GTAAATAA GTACA chr2L:1057652-1057772 37 3.66e-04 CACGAGCCAT GTCAACAA CAAGTGAAGT chr3R:24293290-24293410 57 4.16e-04 TATTTTTTCA GTAAACAC AATTGATTGT chr3R:21263332-21263452 78 4.16e-04 ATGTCCACAT GTAAACAC AGCTGTACAT chr3R:6665438-6665558 72 4.16e-04 GACAATCAAT GTAAACAC CACAGTCGCT chr2R:12007877-12007997 113 4.77e-04 CAACAACTCA ATAAACAG chr3L:18242256-18242376 7 4.77e-04 TTCTGG GCAAATAG TGCAGGCAGA chr2R:6788353-6788473 90 4.77e-04 TGAGGCCAAT GCAAATAG CAGATACGCA chr3R:4975327-4975447 12 4.77e-04 TGTTTTCTTT ATAAACAG AAAACTTAAT chr2L:8552623-8552743 73 4.77e-04 TTATCCAATT ATAAACAG GTTATTTTAA chr2R:22200021-22200141 60 4.77e-04 ACTGGGAAAA GCAAATAG GCCATGTTTC chr2L:18496961-18497081 108 4.77e-04 AGACTGCCGG ATAAACAG GCACA chr3L:20275993-20276113 34 4.77e-04 TTTTCTAAAA GCAAATAG TGCCTGCCGT chr3R:6426278-6426398 25 4.77e-04 GAGCAGAGCT GCCAACAG CTTTGTTTGT chr3R:31309395-31309515 57 4.99e-04 ATTTATACAA GAAAACAG AGCCGCAGTA chr2R:13474930-13475050 101 4.99e-04 TCAAACGAAC GAAAACAG TGTCAATATA chr3R:15670666-15670786 22 5.42e-04 AATCTCCAAT GTCAACAG CGGCTTACAT chr3R:23947147-23947267 60 5.42e-04 GTTTGCGTTG GTAAATAG TGACAAGTTT chr3R:8155885-8156005 99 5.42e-04 TATATACCGA GTAAATAG ATTCTCCCCC chr2R:13305674-13305794 108 5.42e-04 ACATCAAACT GTCAACAG ATCAA chr3R:13448491-13448611 78 6.10e-04 CAATGACAGC ACAAATAA GGTTTTTATT chr2L:6818474-6818594 74 6.10e-04 TGTAAATTAT ACAAATAA CGATCAACAA chr3R:18785924-18786044 42 6.10e-04 GTCTGTCAAC ACAAATAA AGAAATGCCA chr2R:7756398-7756518 17 6.10e-04 AGCTAGGATA ACAAATAA CAACAAATGC chr3L:705259-705379 105 6.10e-04 ATATAACAAA ACCAACAA GCGATTAC chr2L:12049263-12049383 104 6.10e-04 GAAGAGTTAA ACAAATAA TAGGGCCCG chr2L:12509607-12509727 58 6.10e-04 TATTGACTGA ACAAATAA TAGCAAATAT chr3L:8347490-8347610 73 7.26e-04 CGCCAGCTGT GCACACAA CGTCGCGGTC chr3L:19847123-19847243 46 7.26e-04 TGTCTGCCAT AAAAACAA AGCAAATTTA chr2R:22387656-22387776 67 7.26e-04 TTTGGCCTAC AAAAACAA CCAGAGTCAA chr3L:11273705-11273825 48 7.26e-04 CAAAGGAAAA ACAAACAC GGATAAGCCG chrX:19375552-19375672 103 7.26e-04 AGCACAGTGA GCACACAA TGTAAAACGC chr2L:5338771-5338891 25 7.26e-04 TATGCACTTA GCACACAA TTCTTCGAGT chr2R:21475055-21475175 15 7.26e-04 gcaacagcac aaaaacaa caaTGAAAAG chr2R:13038710-13038830 51 7.26e-04 CGGCACGACC AAAAACAA AAAGTGGCGC chrX:12744097-12744217 44 7.26e-04 GAGCAGCAGG GCACACAA AAGCCGTAAC chr3L:16640609-16640729 86 8.42e-04 TGCAATAAAC ATAAATAA TAATATATAA chr2R:22666708-22666828 32 8.42e-04 TATTAATAAA ATAAATAA GTAAAGTACA chrX:10115657-10115777 70 8.42e-04 TTGGGTAAAT ATCAACAA GCGGGTCCGT chr3L:16010349-16010469 20 8.42e-04 ATAAATAAAT ATAAATAA AGGGAATGAG chr3L:11003065-11003185 75 8.42e-04 ATATTGATCC ATAAATAA CAGATCCCCC chr3R:21633862-21633982 96 8.42e-04 TCAGCGCCCC ATCAACAA GGGGTACACT chr2L:117883-118003 57 1.08e-03 TGGACATTAA GTACACAA TGGATAGATA chrX:18774990-18775110 31 1.08e-03 AAATGAAAAT GAAAATAA AGCCAAATGC chr3L:11491933-11492053 54 1.08e-03 GCATACAAAT GCAAATAC ACCACCCACA chr2R:9543691-9543811 34 1.08e-03 ACGAAGAAGC GACAACAA AGCTCATGTT chrX:11823209-11823329 76 1.08e-03 ATTTGCAGTT GACAACAa gagagcaaac chr3R:9390337-9390457 7 1.08e-03 TCATAA ATAAACAC TTCTATTGAT chr2R:17272589-17272709 68 1.08e-03 CTCAGCTTGC ATAAACAT AGAGTCGATC chr3R:15983637-15983757 58 1.08e-03 ATCAGCAATG GCAAATAC AATTGTTTGC chr2R:14787904-14788024 13 1.08e-03 GGGACATAAT GCAAATAT TGACAATGTC chrX:2191997-2192117 72 1.08e-03 GTTGTCCCGG GTACACAA CAACAGAAAT chr3L:11247569-11247689 27 1.08e-03 CTGATTTTGT Gtacacaa tgcaaataca chr2R:10485588-10485708 60 1.08e-03 TTGAATACAT ATAAACAC AGCTTCCGGT chr3L:11516391-11516511 55 1.08e-03 ATTGTTATGG GCAAATAT GAGAGTGCCA chrX:3024681-3024801 100 1.08e-03 ATGGCTTGCA GCAAATAT GCGCCCCTAT chr3R:5016435-5016555 73 1.08e-03 TATTTTCCAT ATAAACAC TCGGCTGCTT chr2L:16451983-16452103 76 1.08e-03 TGTTTAATTG GTACACAA CTGTTAATTG chr3L:4193885-4194005 14 1.08e-03 AAAATTTGGC GCCAACAT TTTTGGTTAC chr2L:10497548-10497668 101 1.08e-03 TTTGAGCTAG ATAAACAT ATTTGCATTA chr3L:22837712-22837832 89 1.08e-03 CAATACTAAC GACAACAA TGTAAAACAC chrX:7579862-7579982 20 1.21e-03 CTGATAAGTC GAAAACAC AAATGAATCT chr3L:13032282-13032402 7 1.21e-03 TTGGCT GTCAATAA TCTGTCGACA chrX:2462112-2462232 107 1.21e-03 TGTGTTTTGG ACCAACAG CCCCCC chr2R:7167984-7168104 4 1.21e-03 AAC ACAAATAG GCATCAAATG chr3L:905150-905270 26 1.35e-03 CTACAAAAAT AAAAACAG ATTCTTTAAA chr2R:14109813-14109933 48 1.35e-03 ATCAATAAAA GTAAATAC GAGAAATGAA chr3L:8683896-8684016 79 1.35e-03 AATGAGAAGT GTCAACAT GTGCTCGTCT chr2R:22540004-22540124 85 1.35e-03 CAGATACTCT GTAAATAC GCGCACATAC chr3R:9889087-9889207 70 1.35e-03 CAAGTGCCAA GTAAATAT GCTCTGATAC chr2L:1094824-1094944 93 1.35e-03 CCACAACCAT GTAAATAT ATTATTATAA chr2R:7951917-7952037 66 1.35e-03 CCTCACACAG GTAAATAT GGAATACGAG chr2L:470052-470172 39 1.35e-03 GTATGGCTCT GTAAATAT CTGAGTGTTA chrX:12733979-12734099 32 1.35e-03 cgtatgtaTG AAAAACAG AGGAAGACAG chr3R:10567002-10567122 84 1.43e-03 AGGTAAAATA ATAAATAG ATAAGGCAGC chr2L:6252391-6252511 57 1.43e-03 GTAAATGCTT ATCAACAG GCAGCCGCGC chr3L:10741298-10741418 90 1.49e-03 TTCGGCTTTT GTACACAG GGCGTATGAG chr3L:4272293-4272413 14 1.51e-03 AAATCCCTTT GTCAATAG AGTTGTTACA chr2L:1118263-1118383 8 1.58e-03 AAATAAA CCAAACAA CATGGGATAG chr2L:7566799-7566919 56 1.86e-03 ACTTTAGTTA AACAACAA AATTCTAAGA chr2R:19860399-19860519 50 1.86e-03 AAAAGGCGTA AAAAATAA ATATGATGTA chr2L:10505035-10505155 58 1.86e-03 TGCCGGCCAC ACAAATAT TGACACGCGA chr2L:8080788-8080908 81 1.86e-03 GCTGCTCTTT AAAAATAA GTGCATAACC chr3L:20494081-20494201 1 1.86e-03 . AACAACAA TGCCATAATA chrX:18101195-18101315 111 1.86e-03 TTTGGCAAAG AACAACAA AA chr3R:28552373-28552493 80 1.86e-03 ACATAACTGC ACAAATAT GTACATAGCA chrX:7300522-7300642 60 1.86e-03 ACGGCGCAAC AACAACAA AGTGTGGCGC chrX:7337569-7337689 17 1.86e-03 ACAAGAGTTC AACAACAA AATCCCTAAA chrX:10582188-10582308 64 2.05e-03 TGTTTGGAAA CTAAACAA GAAAATATTG chrX:17782174-17782294 7 2.05e-03 CCAAAA ATCAATAA TATTCGAAAC chr2R:13038976-13039096 30 2.05e-03 acacacacac gcacacac CTACGAACGC chr2R:9402960-9403080 65 2.05e-03 CCGCACTTCA CTAAACAA TAGGGCGGCT chr3R:21271353-21271473 38 2.33e-03 cGCAACAAGA ATAAATAT GTACAAAAGT chrX:20506085-20506205 70 2.33e-03 gaatattaaa ataaatac taattcaGAG chr3L:7592238-7592358 55 2.33e-03 aaattaaata ataaatat taaacattaa chr2L:12465802-12465922 62 2.33e-03 TGGGTCATTT ATAAATAT TTGTATATTT chr2L:5338083-5338203 92 2.33e-03 GAAGGTATAT ATAAATAC GAGTCCATTC chr2R:12729329-12729449 61 2.33e-03 TTATATTTGC ATAAATAT TTACACAGAC chr2L:19370232-19370352 108 2.33e-03 GAGCATGTTT ATAAATAT TTTCA chrX:12736236-12736356 4 2.33e-03 AAT ATAAATAC AACAATTCCC chr3R:6414767-6414887 88 2.33e-03 GCCGCTCTTC ACACACAG AAAGAAATCT chr3L:19077368-19077488 79 2.51e-03 GTTGCCTGGG GAAAATAC GCAATGGAAA chrX:12742490-12742610 83 2.51e-03 TCATGTAACC GTACACAT GTGCTTGTGC chr2L:6283426-6283546 63 2.67e-03 TTGACCAAAT AAAAATAG ACAAGAAGCT chr3L:11540376-11540496 51 2.67e-03 ACTCATGTGT GTCAATAT TTGGTTTCCT chr2L:7525423-7525543 53 2.67e-03 ATAAGCCAGT GTCAATAT TTGGCCAAAG chr3R:24301569-24301689 62 2.67e-03 GGTAACCGAA GTCAATAT GCATTTGGAT chr3L:20507690-20507810 89 2.67e-03 GCTGAAAATT AACAACAG TTTGTTGACT chr3R:14744472-14744592 106 2.67e-03 TGTTCATTGA GTCAATAT TTAATCT chr2L:14235123-14235243 106 2.73e-03 TCAGATTTAT CTAAACAG AATCGCT chr2L:20431361-20431481 111 2.83e-03 AGTGGCAACT ACCCACAA TA chr2L:1646710-1646830 40 2.94e-03 CACTATAATT CCCAACAA GTTCTATCTC chrX:17298017-17298137 57 3.56e-03 GTGTAAAATC GAACATAA CTGCAGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:161934-162054 2.2e-05 15_[+1]_97 chr3R:25885265-25885385 2.2e-05 58_[+1]_54 chr2R:11403203-11403323 2.2e-05 55_[+1]_57 chr3L:3080695-3080815 2.2e-05 56_[+1]_56 chr3L:16429599-16429719 2.2e-05 67_[+1]_45 chr2L:20327529-20327649 2.2e-05 92_[+1]_20 chr3L:8379327-8379447 2.2e-05 49_[+1]_63 chr3L:7859864-7859984 2.2e-05 48_[+1]_64 chr2L:20852198-20852318 2.2e-05 63_[+1]_49 chr2L:1399531-1399651 2.2e-05 60_[+1]_52 chr3R:30767231-30767351 5.3e-05 76_[+1]_36 chr3R:20259570-20259690 5.3e-05 13_[+1]_99 chr3R:20263839-20263959 5.3e-05 79_[+1]_33 chr3R:26539306-26539426 5.3e-05 32_[+1]_80 chr3L:14671714-14671834 5.3e-05 86_[+1]_26 chr3R:23817934-23818054 5.3e-05 87_[+1]_25 chr3L:18198304-18198424 5.3e-05 65_[+1]_47 chr3L:17993427-17993547 5.3e-05 40_[+1]_72 chr2L:3888334-3888454 5.3e-05 37_[+1]_75 chr2L:19949738-19949858 5.3e-05 71_[+1]_41 chr3R:29480063-29480183 5.3e-05 87_[+1]_25 chr2L:1735279-1735399 5.3e-05 99_[+1]_13 chr2R:10540319-10540439 5.3e-05 17_[+1]_95 chr2R:20126389-20126509 6.7e-05 54_[+1]_58 chr2L:5303692-5303812 6.7e-05 93_[+1]_19 chr2R:23180959-23181079 6.7e-05 57_[+1]_55 chr3R:29757329-29757449 6.7e-05 58_[+1]_54 chrX:17473446-17473566 6.7e-05 41_[+1]_71 chrX:13820527-13820647 6.7e-05 33_[+1]_79 chr2R:14073625-14073745 8.8e-05 53_[+1]_59 chr3L:1168562-1168682 8.8e-05 38_[+1]_74 chr2R:22546786-22546906 0.00012 3_[+1]_109 chr3R:15093057-15093177 0.00012 71_[+1]_41 chr3L:1690830-1690950 0.00012 92_[+1]_20 chr2L:14245580-14245700 0.00012 32_[+1]_80 chr2L:4475522-4475642 0.00012 48_[+1]_64 chr3L:7961312-7961432 0.00012 57_[+1]_55 chrX:13645182-13645302 0.00012 4_[+1]_108 chrX:15497866-15497986 0.00012 2_[+1]_110 chr2L:856133-856253 0.00021 65_[+1]_47 chr3R:29083976-29084096 0.00021 1_[+1]_111 chr2R:18567350-18567470 0.00021 88_[+1]_24 chr2L:12641577-12641697 0.00021 13_[+1]_99 chr3R:29548932-29549052 0.00021 50_[+1]_62 chr2R:18667129-18667249 0.00021 81_[+1]_31 chr3R:16330149-16330269 0.00021 35_[+1]_77 chrX:15893945-15894065 0.00021 35_[+1]_77 chr2R:14216983-14217103 0.00028 77_[+1]_35 chr3R:18438344-18438464 0.00028 59_[+1]_53 chrX:2653650-2653770 0.00028 86_[+1]_26 chr2L:11341075-11341195 0.00028 45_[+1]_67 chr3R:31608413-31608533 0.00028 36_[+1]_76 chrX:4609889-4610009 0.00028 102_[+1]_10 chr3R:19067995-19068115 0.00028 100_[+1]_12 chr3L:14354648-14354768 0.00028 51_[+1]_61 chr3R:6182659-6182779 0.00028 5_[+1]_107 chr2R:17274156-17274276 0.00028 17_[+1]_95 chr3R:12250413-12250533 0.00028 84_[+1]_28 chr3L:4615203-4615323 0.00028 73_[+1]_39 chr3L:14328567-14328687 0.00037 43_[+1]_69 chrX:362247-362367 0.00037 94_[+1]_18 chr2L:18717479-18717599 0.00037 63_[+1]_49 chr2R:8045730-8045850 0.00037 [+1]_112 chr3L:4376091-4376211 0.00037 16_[+1]_96 chr3R:30106246-30106366 0.00037 67_[+1]_45 chr2L:3397732-3397852 0.00037 97_[+1]_15 chr2R:21848651-21848771 0.00037 26_[+1]_86 chrX:12750684-12750804 0.00037 112_[+1] chr2R:7373922-7374042 0.00037 107_[+1]_5 chr2L:1057652-1057772 0.00037 36_[+1]_76 chr3R:24293290-24293410 0.00042 56_[+1]_56 chr3R:21263332-21263452 0.00042 77_[+1]_35 chr3R:6665438-6665558 0.00042 71_[+1]_41 chr2R:12007877-12007997 0.00048 112_[+1] chr3L:18242256-18242376 0.00048 6_[+1]_106 chr2R:6788353-6788473 0.00048 89_[+1]_23 chr3R:4975327-4975447 0.00048 11_[+1]_101 chr2L:8552623-8552743 0.00048 72_[+1]_40 chr2R:22200021-22200141 0.00048 59_[+1]_53 chr2L:18496961-18497081 0.00048 107_[+1]_5 chr3L:20275993-20276113 0.00048 33_[+1]_79 chr3R:6426278-6426398 0.00048 24_[+1]_88 chr3R:31309395-31309515 0.0005 56_[+1]_56 chr2R:13474930-13475050 0.0005 100_[+1]_12 chr3R:15670666-15670786 0.00054 21_[+1]_91 chr3R:23947147-23947267 0.00054 59_[+1]_53 chr3R:8155885-8156005 0.00054 98_[+1]_14 chr2R:13305674-13305794 0.00054 107_[+1]_5 chr3R:13448491-13448611 0.00061 77_[+1]_35 chr2L:6818474-6818594 0.00061 73_[+1]_39 chr3R:18785924-18786044 0.00061 41_[+1]_71 chr2R:7756398-7756518 0.00061 16_[+1]_96 chr3L:705259-705379 0.00061 104_[+1]_8 chr2L:12049263-12049383 0.00061 103_[+1]_9 chr2L:12509607-12509727 0.00061 57_[+1]_55 chr3L:8347490-8347610 0.00073 72_[+1]_40 chr3L:19847123-19847243 0.00073 45_[+1]_67 chr2R:22387656-22387776 0.00073 66_[+1]_46 chr3L:11273705-11273825 0.00073 47_[+1]_65 chrX:19375552-19375672 0.00073 102_[+1]_10 chr2L:5338771-5338891 0.00073 24_[+1]_88 chr2R:21475055-21475175 0.00073 14_[+1]_98 chr2R:13038710-13038830 0.00073 50_[+1]_62 chrX:12744097-12744217 0.00073 43_[+1]_69 chr3L:16640609-16640729 0.00084 85_[+1]_27 chr2R:22666708-22666828 0.00084 31_[+1]_81 chrX:10115657-10115777 0.00084 69_[+1]_43 chr3L:16010349-16010469 0.00084 19_[+1]_93 chr3L:11003065-11003185 0.00084 74_[+1]_38 chr3R:21633862-21633982 0.00084 95_[+1]_17 chr2L:117883-118003 0.0011 56_[+1]_56 chrX:18774990-18775110 0.0011 30_[+1]_82 chr3L:11491933-11492053 0.0011 53_[+1]_59 chr2R:9543691-9543811 0.0011 33_[+1]_79 chrX:11823209-11823329 0.0011 75_[+1]_37 chr3R:9390337-9390457 0.0011 6_[+1]_106 chr2R:17272589-17272709 0.0011 67_[+1]_45 chr3R:15983637-15983757 0.0011 57_[+1]_55 chr2R:14787904-14788024 0.0011 12_[+1]_100 chrX:2191997-2192117 0.0011 71_[+1]_41 chr3L:11247569-11247689 0.0011 26_[+1]_86 chr2R:10485588-10485708 0.0011 59_[+1]_53 chr3L:11516391-11516511 0.0011 54_[+1]_58 chrX:3024681-3024801 0.0011 99_[+1]_13 chr3R:5016435-5016555 0.0011 72_[+1]_40 chr2L:16451983-16452103 0.0011 75_[+1]_37 chr3L:4193885-4194005 0.0011 13_[+1]_99 chr2L:10497548-10497668 0.0011 100_[+1]_12 chr3L:22837712-22837832 0.0011 88_[+1]_24 chrX:7579862-7579982 0.0012 19_[+1]_93 chr3L:13032282-13032402 0.0012 6_[+1]_106 chrX:2462112-2462232 0.0012 106_[+1]_6 chr2R:7167984-7168104 0.0012 3_[+1]_109 chr3L:905150-905270 0.0014 25_[+1]_87 chr2R:14109813-14109933 0.0014 47_[+1]_65 chr3L:8683896-8684016 0.0014 78_[+1]_34 chr2R:22540004-22540124 0.0014 84_[+1]_28 chr3R:9889087-9889207 0.0014 69_[+1]_43 chr2L:1094824-1094944 0.0014 92_[+1]_20 chr2R:7951917-7952037 0.0014 65_[+1]_47 chr2L:470052-470172 0.0014 38_[+1]_74 chrX:12733979-12734099 0.0014 31_[+1]_81 chr3R:10567002-10567122 0.0014 83_[+1]_29 chr2L:6252391-6252511 0.0014 56_[+1]_56 chr3L:10741298-10741418 0.0015 89_[+1]_23 chr3L:4272293-4272413 0.0015 13_[+1]_99 chr2L:1118263-1118383 0.0016 7_[+1]_105 chr2L:7566799-7566919 0.0019 55_[+1]_57 chr2R:19860399-19860519 0.0019 49_[+1]_63 chr2L:10505035-10505155 0.0019 57_[+1]_55 chr2L:8080788-8080908 0.0019 80_[+1]_32 chr3L:20494081-20494201 0.0019 [+1]_112 chrX:18101195-18101315 0.0019 110_[+1]_2 chr3R:28552373-28552493 0.0019 79_[+1]_33 chrX:7300522-7300642 0.0019 59_[+1]_53 chrX:7337569-7337689 0.0019 16_[+1]_96 chrX:10582188-10582308 0.0021 63_[+1]_49 chrX:17782174-17782294 0.0021 6_[+1]_106 chr2R:13038976-13039096 0.0021 29_[+1]_83 chr2R:9402960-9403080 0.0021 64_[+1]_48 chr3R:21271353-21271473 0.0023 37_[+1]_75 chrX:20506085-20506205 0.0023 69_[+1]_43 chr3L:7592238-7592358 0.0023 54_[+1]_58 chr2L:12465802-12465922 0.0023 61_[+1]_51 chr2L:5338083-5338203 0.0023 91_[+1]_21 chr2R:12729329-12729449 0.0023 60_[+1]_52 chr2L:19370232-19370352 0.0023 107_[+1]_5 chrX:12736236-12736356 0.0023 3_[+1]_109 chr3R:6414767-6414887 0.0023 87_[+1]_25 chr3L:19077368-19077488 0.0025 78_[+1]_34 chrX:12742490-12742610 0.0025 82_[+1]_30 chr2L:6283426-6283546 0.0027 62_[+1]_50 chr3L:11540376-11540496 0.0027 50_[+1]_62 chr2L:7525423-7525543 0.0027 52_[+1]_60 chr3R:24301569-24301689 0.0027 61_[+1]_51 chr3L:20507690-20507810 0.0027 88_[+1]_24 chr3R:14744472-14744592 0.0027 105_[+1]_7 chr2L:14235123-14235243 0.0027 105_[+1]_7 chr2L:20431361-20431481 0.0028 110_[+1]_2 chr2L:1646710-1646830 0.0029 39_[+1]_73 chrX:17298017-17298137 0.0036 56_[+1]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RYAAACAA width=8 seqs=181 chr2L:161934-162054 ( 16) GCAAACAA 1 chr3R:25885265-25885385 ( 59) GCAAACAA 1 chr2R:11403203-11403323 ( 56) GCAAACAA 1 chr3L:3080695-3080815 ( 57) GCAAACAA 1 chr3L:16429599-16429719 ( 68) GCAAACAA 1 chr2L:20327529-20327649 ( 93) GCAAACAA 1 chr3L:8379327-8379447 ( 50) GCAAACAA 1 chr3L:7859864-7859984 ( 49) GCAAACAA 1 chr2L:20852198-20852318 ( 64) GCAAACAA 1 chr2L:1399531-1399651 ( 61) GCAAACAA 1 chr3R:30767231-30767351 ( 77) GTAAACAA 1 chr3R:20259570-20259690 ( 14) GTAAACAA 1 chr3R:20263839-20263959 ( 80) GTAAACAA 1 chr3R:26539306-26539426 ( 33) GTAAACAA 1 chr3L:14671714-14671834 ( 87) GTAAACAA 1 chr3R:23817934-23818054 ( 88) GTAAACAA 1 chr3L:18198304-18198424 ( 66) GTAAACAA 1 chr3L:17993427-17993547 ( 41) GTAAACAA 1 chr2L:3888334-3888454 ( 38) GTAAACAA 1 chr2L:19949738-19949858 ( 72) GTAAACAA 1 chr3R:29480063-29480183 ( 88) GTAAACAA 1 chr2L:1735279-1735399 ( 100) GTAAACAA 1 chr2R:10540319-10540439 ( 18) GTAAACAA 1 chr2R:20126389-20126509 ( 55) GCAAACAG 1 chr2L:5303692-5303812 ( 94) GCAAACAG 1 chr2R:23180959-23181079 ( 58) GCAAACAG 1 chr3R:29757329-29757449 ( 59) GCAAACAG 1 chrX:17473446-17473566 ( 42) GCAAACAG 1 chrX:13820527-13820647 ( 34) GCAAACAG 1 chr2R:14073625-14073745 ( 54) GTAAACAG 1 chr3L:1168562-1168682 ( 39) GTAAACAG 1 chr2R:22546786-22546906 ( 4) ACAAACAA 1 chr3R:15093057-15093177 ( 72) ACAAACAA 1 chr3L:1690830-1690950 ( 93) ACAAACAA 1 chr2L:14245580-14245700 ( 33) ACAAACAA 1 chr2L:4475522-4475642 ( 49) ACAAACAA 1 chr3L:7961312-7961432 ( 58) ACAAACAA 1 chrX:13645182-13645302 ( 5) ACAAACAA 1 chrX:15497866-15497986 ( 3) ACAAACAA 1 chr2L:856133-856253 ( 66) ATAAACAA 1 chr3R:29083976-29084096 ( 2) ATAAACAA 1 chr2R:18567350-18567470 ( 89) ATAAACAA 1 chr2L:12641577-12641697 ( 14) ATAAACAA 1 chr3R:29548932-29549052 ( 51) GCAAATAA 1 chr2R:18667129-18667249 ( 82) GCCAACAA 1 chr3R:16330149-16330269 ( 36) GCCAACAA 1 chrX:15893945-15894065 ( 36) GCAAATAA 1 chr2R:14216983-14217103 ( 78) GCAAACAT 1 chr3R:18438344-18438464 ( 60) GCAAACAC 1 chrX:2653650-2653770 ( 87) GAAAACAA 1 chr2L:11341075-11341195 ( 46) GAAAACAA 1 chr3R:31608413-31608533 ( 37) GAAAACAA 1 chrX:4609889-4610009 ( 103) GAAAACAA 1 chr3R:19067995-19068115 ( 101) GCAAACAC 1 chr3L:14354648-14354768 ( 52) GAAAACAA 1 chr3R:6182659-6182779 ( 6) GAAAACAA 1 chr2R:17274156-17274276 ( 18) GCAAACAC 1 chr3R:12250413-12250533 ( 85) GCAAACAT 1 chr3L:4615203-4615323 ( 74) GCAAACAT 1 chr3L:14328567-14328687 ( 44) GTAAATAA 1 chrX:362247-362367 ( 95) ACAAACAG 1 chr2L:18717479-18717599 ( 64) ACAAACAG 1 chr2R:8045730-8045850 ( 1) ACAAACAG 1 chr3L:4376091-4376211 ( 17) GTCAACAA 1 chr3R:30106246-30106366 ( 68) GTAAATAA 1 chr2L:3397732-3397852 ( 98) GTAAATAA 1 chr2R:21848651-21848771 ( 27) GTCAACAA 1 chrX:12750684-12750804 ( 113) ACAAACAG 1 chr2R:7373922-7374042 ( 108) GTAAATAA 1 chr2L:1057652-1057772 ( 37) GTCAACAA 1 chr3R:24293290-24293410 ( 57) GTAAACAC 1 chr3R:21263332-21263452 ( 78) GTAAACAC 1 chr3R:6665438-6665558 ( 72) GTAAACAC 1 chr2R:12007877-12007997 ( 113) ATAAACAG 1 chr3L:18242256-18242376 ( 7) GCAAATAG 1 chr2R:6788353-6788473 ( 90) GCAAATAG 1 chr3R:4975327-4975447 ( 12) ATAAACAG 1 chr2L:8552623-8552743 ( 73) ATAAACAG 1 chr2R:22200021-22200141 ( 60) GCAAATAG 1 chr2L:18496961-18497081 ( 108) ATAAACAG 1 chr3L:20275993-20276113 ( 34) GCAAATAG 1 chr3R:6426278-6426398 ( 25) GCCAACAG 1 chr3R:31309395-31309515 ( 57) GAAAACAG 1 chr2R:13474930-13475050 ( 101) GAAAACAG 1 chr3R:15670666-15670786 ( 22) GTCAACAG 1 chr3R:23947147-23947267 ( 60) GTAAATAG 1 chr3R:8155885-8156005 ( 99) GTAAATAG 1 chr2R:13305674-13305794 ( 108) GTCAACAG 1 chr3R:13448491-13448611 ( 78) ACAAATAA 1 chr2L:6818474-6818594 ( 74) ACAAATAA 1 chr3R:18785924-18786044 ( 42) ACAAATAA 1 chr2R:7756398-7756518 ( 17) ACAAATAA 1 chr3L:705259-705379 ( 105) ACCAACAA 1 chr2L:12049263-12049383 ( 104) ACAAATAA 1 chr2L:12509607-12509727 ( 58) ACAAATAA 1 chr3L:8347490-8347610 ( 73) GCACACAA 1 chr3L:19847123-19847243 ( 46) AAAAACAA 1 chr2R:22387656-22387776 ( 67) AAAAACAA 1 chr3L:11273705-11273825 ( 48) ACAAACAC 1 chrX:19375552-19375672 ( 103) GCACACAA 1 chr2L:5338771-5338891 ( 25) GCACACAA 1 chr2R:21475055-21475175 ( 15) AAAAACAA 1 chr2R:13038710-13038830 ( 51) AAAAACAA 1 chrX:12744097-12744217 ( 44) GCACACAA 1 chr3L:16640609-16640729 ( 86) ATAAATAA 1 chr2R:22666708-22666828 ( 32) ATAAATAA 1 chrX:10115657-10115777 ( 70) ATCAACAA 1 chr3L:16010349-16010469 ( 20) ATAAATAA 1 chr3L:11003065-11003185 ( 75) ATAAATAA 1 chr3R:21633862-21633982 ( 96) ATCAACAA 1 chr2L:117883-118003 ( 57) GTACACAA 1 chrX:18774990-18775110 ( 31) GAAAATAA 1 chr3L:11491933-11492053 ( 54) GCAAATAC 1 chr2R:9543691-9543811 ( 34) GACAACAA 1 chrX:11823209-11823329 ( 76) GACAACAA 1 chr3R:9390337-9390457 ( 7) ATAAACAC 1 chr2R:17272589-17272709 ( 68) ATAAACAT 1 chr3R:15983637-15983757 ( 58) GCAAATAC 1 chr2R:14787904-14788024 ( 13) GCAAATAT 1 chrX:2191997-2192117 ( 72) GTACACAA 1 chr3L:11247569-11247689 ( 27) GTACACAA 1 chr2R:10485588-10485708 ( 60) ATAAACAC 1 chr3L:11516391-11516511 ( 55) GCAAATAT 1 chrX:3024681-3024801 ( 100) GCAAATAT 1 chr3R:5016435-5016555 ( 73) ATAAACAC 1 chr2L:16451983-16452103 ( 76) GTACACAA 1 chr3L:4193885-4194005 ( 14) GCCAACAT 1 chr2L:10497548-10497668 ( 101) ATAAACAT 1 chr3L:22837712-22837832 ( 89) GACAACAA 1 chrX:7579862-7579982 ( 20) GAAAACAC 1 chr3L:13032282-13032402 ( 7) GTCAATAA 1 chrX:2462112-2462232 ( 107) ACCAACAG 1 chr2R:7167984-7168104 ( 4) ACAAATAG 1 chr3L:905150-905270 ( 26) AAAAACAG 1 chr2R:14109813-14109933 ( 48) GTAAATAC 1 chr3L:8683896-8684016 ( 79) GTCAACAT 1 chr2R:22540004-22540124 ( 85) GTAAATAC 1 chr3R:9889087-9889207 ( 70) GTAAATAT 1 chr2L:1094824-1094944 ( 93) GTAAATAT 1 chr2R:7951917-7952037 ( 66) GTAAATAT 1 chr2L:470052-470172 ( 39) GTAAATAT 1 chrX:12733979-12734099 ( 32) AAAAACAG 1 chr3R:10567002-10567122 ( 84) ATAAATAG 1 chr2L:6252391-6252511 ( 57) ATCAACAG 1 chr3L:10741298-10741418 ( 90) GTACACAG 1 chr3L:4272293-4272413 ( 14) GTCAATAG 1 chr2L:1118263-1118383 ( 8) CCAAACAA 1 chr2L:7566799-7566919 ( 56) AACAACAA 1 chr2R:19860399-19860519 ( 50) AAAAATAA 1 chr2L:10505035-10505155 ( 58) ACAAATAT 1 chr2L:8080788-8080908 ( 81) AAAAATAA 1 chr3L:20494081-20494201 ( 1) AACAACAA 1 chrX:18101195-18101315 ( 111) AACAACAA 1 chr3R:28552373-28552493 ( 80) ACAAATAT 1 chrX:7300522-7300642 ( 60) AACAACAA 1 chrX:7337569-7337689 ( 17) AACAACAA 1 chrX:10582188-10582308 ( 64) CTAAACAA 1 chrX:17782174-17782294 ( 7) ATCAATAA 1 chr2R:13038976-13039096 ( 30) GCACACAC 1 chr2R:9402960-9403080 ( 65) CTAAACAA 1 chr3R:21271353-21271473 ( 38) ATAAATAT 1 chrX:20506085-20506205 ( 70) ATAAATAC 1 chr3L:7592238-7592358 ( 55) ATAAATAT 1 chr2L:12465802-12465922 ( 62) ATAAATAT 1 chr2L:5338083-5338203 ( 92) ATAAATAC 1 chr2R:12729329-12729449 ( 61) ATAAATAT 1 chr2L:19370232-19370352 ( 108) ATAAATAT 1 chrX:12736236-12736356 ( 4) ATAAATAC 1 chr3R:6414767-6414887 ( 88) ACACACAG 1 chr3L:19077368-19077488 ( 79) GAAAATAC 1 chrX:12742490-12742610 ( 83) GTACACAT 1 chr2L:6283426-6283546 ( 63) AAAAATAG 1 chr3L:11540376-11540496 ( 51) GTCAATAT 1 chr2L:7525423-7525543 ( 53) GTCAATAT 1 chr3R:24301569-24301689 ( 62) GTCAATAT 1 chr3L:20507690-20507810 ( 89) AACAACAG 1 chr3R:14744472-14744592 ( 106) GTCAATAT 1 chr2L:14235123-14235243 ( 106) CTAAACAG 1 chr2L:20431361-20431481 ( 111) ACCCACAA 1 chr2L:1646710-1646830 ( 40) CCCAACAA 1 chrX:17298017-17298137 ( 57) GAACATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.33193 E= 1.9e-020 37 -289 151 -1414 -87 92 -1414 64 143 -17 -1414 -1414 161 -140 -1414 -1414 172 -1414 -1414 -1414 -1414 173 -1414 15 172 -1414 -1414 -1414 81 -89 8 -100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 181 E= 1.9e-020 0.392265 0.027624 0.580110 0.000000 0.165746 0.386740 0.000000 0.447514 0.817680 0.182320 0.000000 0.000000 0.922652 0.077348 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.679558 0.000000 0.320442 1.000000 0.000000 0.000000 0.000000 0.530387 0.110497 0.215470 0.143646 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-1 regular expression -------------------------------------------------------------------------------- [GA][TC]AAA[CT]A[AG] -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCAACG MEME-2 width = 8 sites = 25 llr = 256 E-value = 3.0e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCAACG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::aa:2 pos.-specific C 3::a::a: probability G :aa::::8 matrix T 7::::::: bits 2.3 ** * 2.1 *** * 1.8 ****** 1.6 ****** Relative 1.4 ******* Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCAACG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7566799-7566919 76 9.43e-06 TTCTAAGAAG TGGCAACG GTTGCATTAG chr2L:17572986-17573106 48 9.43e-06 TGCGAAAAAT TGGCAACG TTGCATTTCC chr3R:16330149-16330269 64 9.43e-06 GACTGAATTG TGGCAACG TTGCACTCAC chr3L:19077368-19077488 62 9.43e-06 TGGCGAAATT TGGCAACG TTGCCTGGGG chrX:12750684-12750804 55 9.43e-06 GAGTGAAGTT TGGCAACG CGGCGCCGCA chr3L:22837712-22837832 36 9.43e-06 CCGTGAAGTA TGGCAACG CCGCAATGCC chr3L:10525832-10525952 57 9.43e-06 TGCTGAAGTT TGGCAACG GCGCCCTATC chr3R:29069812-29069932 52 9.43e-06 CTGTGAAGTC TGGCAACG TTGCAATCAA chrX:12733979-12734099 87 9.43e-06 TGCTGAAGTT TGGCAACG TTGCCATGAA chr3R:6432460-6432580 34 9.43e-06 GGGTGAAGTT TGGCAACG GTGCGAAGAG chr3L:7982061-7982181 49 9.43e-06 GCCAGAAGTT TGGCAACG CTGCATTTAC chr2L:161934-162054 91 1.61e-05 TGGCGCTTCG CGGCAACG TTGCCAAACT chr2L:1118263-1118383 105 1.61e-05 GTTGCTGAAA CGGCAACG GCGCAAAA chr3L:20275993-20276113 108 1.61e-05 CGCACATGGG CGGCAACG CCTCC chrX:10539545-10539665 50 1.61e-05 GAGTGAAGTG CGGCAACG TCGTTTGTTA chr2R:7373922-7374042 63 1.61e-05 GAGTGAAGAG CGGCAACG GCGCGTCGCT chrX:10540588-10540708 49 1.61e-05 AGGAGAAGTG CGGCAACG CCGCTCTCAA chr2L:1057652-1057772 56 1.61e-05 AAGTGAAGTG CGGCAACG TCGCAGGGGC chrX:2653650-2653770 101 3.02e-05 ACAAAGAACT TGGCAACA AGAAGGGGTT chrX:18238037-18238157 13 3.02e-05 AAGAATAAAG TGGCAACA ACGACAAGTT chr2R:6594964-6595084 31 3.02e-05 CAGAGAAAAG TGGCAACA GTGCGTATTC chr3L:7988193-7988313 26 3.02e-05 AAGAGAAGTT TGGCAACA TGGCCTAAGG chr3R:6428227-6428347 75 3.02e-05 TGGAGAAAAT TGGCAACA TCGCTTTCTA chr2L:8825211-8825331 29 4.01e-05 AGCGGAAAAG CGGCAACA GCGCTTGCCA chr3R:29480063-29480183 103 4.96e-05 CAAAGCCGCA TCGCAACG CCATCTCCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7566799-7566919 9.4e-06 75_[+2]_37 chr2L:17572986-17573106 9.4e-06 47_[+2]_65 chr3R:16330149-16330269 9.4e-06 63_[+2]_49 chr3L:19077368-19077488 9.4e-06 61_[+2]_51 chrX:12750684-12750804 9.4e-06 54_[+2]_58 chr3L:22837712-22837832 9.4e-06 35_[+2]_77 chr3L:10525832-10525952 9.4e-06 56_[+2]_56 chr3R:29069812-29069932 9.4e-06 51_[+2]_61 chrX:12733979-12734099 9.4e-06 86_[+2]_26 chr3R:6432460-6432580 9.4e-06 33_[+2]_79 chr3L:7982061-7982181 9.4e-06 48_[+2]_64 chr2L:161934-162054 1.6e-05 90_[+2]_22 chr2L:1118263-1118383 1.6e-05 104_[+2]_8 chr3L:20275993-20276113 1.6e-05 107_[+2]_5 chrX:10539545-10539665 1.6e-05 49_[+2]_63 chr2R:7373922-7374042 1.6e-05 62_[+2]_50 chrX:10540588-10540708 1.6e-05 48_[+2]_64 chr2L:1057652-1057772 1.6e-05 55_[+2]_57 chrX:2653650-2653770 3e-05 100_[+2]_12 chrX:18238037-18238157 3e-05 12_[+2]_100 chr2R:6594964-6595084 3e-05 30_[+2]_82 chr3L:7988193-7988313 3e-05 25_[+2]_87 chr3R:6428227-6428347 3e-05 74_[+2]_38 chr2L:8825211-8825331 4e-05 28_[+2]_84 chr3R:29480063-29480183 5e-05 102_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCAACG width=8 seqs=25 chr2L:7566799-7566919 ( 76) TGGCAACG 1 chr2L:17572986-17573106 ( 48) TGGCAACG 1 chr3R:16330149-16330269 ( 64) TGGCAACG 1 chr3L:19077368-19077488 ( 62) TGGCAACG 1 chrX:12750684-12750804 ( 55) TGGCAACG 1 chr3L:22837712-22837832 ( 36) TGGCAACG 1 chr3L:10525832-10525952 ( 57) TGGCAACG 1 chr3R:29069812-29069932 ( 52) TGGCAACG 1 chrX:12733979-12734099 ( 87) TGGCAACG 1 chr3R:6432460-6432580 ( 34) TGGCAACG 1 chr3L:7982061-7982181 ( 49) TGGCAACG 1 chr2L:161934-162054 ( 91) CGGCAACG 1 chr2L:1118263-1118383 ( 105) CGGCAACG 1 chr3L:20275993-20276113 ( 108) CGGCAACG 1 chrX:10539545-10539665 ( 50) CGGCAACG 1 chr2R:7373922-7374042 ( 63) CGGCAACG 1 chrX:10540588-10540708 ( 49) CGGCAACG 1 chr2L:1057652-1057772 ( 56) CGGCAACG 1 chrX:2653650-2653770 ( 101) TGGCAACA 1 chrX:18238037-18238157 ( 13) TGGCAACA 1 chr2R:6594964-6595084 ( 31) TGGCAACA 1 chr3L:7988193-7988313 ( 26) TGGCAACA 1 chr3R:6428227-6428347 ( 75) TGGCAACA 1 chr2L:8825211-8825331 ( 29) CGGCAACA 1 chr3R:29480063-29480183 ( 103) TCGCAACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 3.0e-011 -1129 64 -1129 124 -1129 -235 223 -1129 -1129 -1129 229 -1129 -1129 229 -1129 -1129 172 -1129 -1129 -1129 172 -1129 -1129 -1129 -1129 229 -1129 -1129 -34 -1129 190 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.0e-011 0.000000 0.320000 0.000000 0.680000 0.000000 0.040000 0.960000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.240000 0.000000 0.760000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACG MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GGCAAC[GA] -------------------------------------------------------------------------------- Time 13.42 secs. ******************************************************************************** ******************************************************************************** MOTIF HYGTTGCC MEME-3 width = 8 sites = 53 llr = 438 E-value = 5.4e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif HYGTTGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:::::2: pos.-specific C 33:11:8a probability G 1:a::a:: matrix T 26:99::: bits 2.3 * * * 2.1 * * * 1.8 * * * 1.6 * * * Relative 1.4 ****** Entropy 1.1 ****** (11.9 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******* 0.0 -------- Multilevel ATGTTGCC consensus CC A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HYGTTGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21263332-21263452 14 8.56e-06 GTCGAAAAAA CTGTTGCC TACTTGCCGG chr3L:4193885-4194005 90 8.56e-06 AAGCAATCAG CTGTTGCC GTTTTCACCT chr2R:13038976-13039096 78 8.56e-06 TGATTGAGCG CTGTTGCC GATTTTCAGC chr3R:6426278-6426398 75 8.56e-06 TGCGTGAGCG CTGTTGCC AAACTTCAGG chr3R:6414767-6414887 73 8.56e-06 TGGCGCTGCG CTGTTGCC GCTCTTCACA chr3R:6429074-6429194 66 8.56e-06 CTACGTTGCG CTGTTGCC ACATTTCACT chr3R:6411516-6411636 46 8.56e-06 TCTTCGTGCG CTGTTGCC AGTTTTCAGT chr3L:11003065-11003185 3 2.73e-05 CA ATGTTGCC TGGCTATTTT chr2R:21848651-21848771 50 2.73e-05 TCAATTTGGC ATGTTGCC TCACAAACGG chrX:12206355-12206475 51 2.73e-05 ttCTGATGCG CCGTTGCC GCTTTTCTGG chr2L:1068811-1068931 62 2.73e-05 ACTGCATGCC ATGTTGCC TGACTTCACA chr3R:18438344-18438464 72 3.94e-05 AAACACAAAG TTGTTGCC GCTTCCCCGA chr2R:13041943-13042063 74 3.94e-05 AGTTATCAGC TTGTTGCC ATTAAATACA chr3L:10831182-10831302 66 3.94e-05 AACTTTCGCG TTGTTGCC ACACTTCCAT chrX:12734516-12734636 67 3.94e-05 TAATGCAGCG TTGTTGCC GAATTTCACA chr2L:161934-162054 28 4.84e-05 AAACAAAGCG ACGTTGCC TCATTTCACG chr2R:16809956-16810076 50 4.84e-05 TTCAAACGCA ACGTTGCC AAGTTTTCTT chrX:7299733-7299853 51 4.84e-05 GATCGCCGCA ACGTTGCC ACTTTTCATT chr2R:13038710-13038830 22 4.84e-05 TTGCTAAGCG ACGTTGCC TGTTTTCACT chrX:17774100-17774220 35 4.84e-05 AATCAATGCG ACGTTGCC AAATTTCAGT chr2L:3545221-3545341 60 4.84e-05 AGAGGAAGCG ACGTTGCC GCTCTTCACC chrX:7602203-7602323 43 4.84e-05 ATCGAGAGCA ACGTTGCC GATTTTCATG chrX:12744097-12744217 4 4.84e-05 GCG ACGTTGCC GTTTTTCAGT chrX:12716974-12717094 80 4.84e-05 CCATCGAGCA ACGTTGCC GAACTTCACC chr2L:165642-165762 61 4.84e-05 ACAGTGCGCA ACGTTGCC AAACTTCTCG chr3L:8347490-8347610 52 5.69e-05 GTAAACTCAG TCGTTGCC CAACGCCAGC chr2R:24315395-24315515 70 7.15e-05 TTCACTTGCG GCGTTGCC AAGTTTCTGT chr3R:21633862-21633982 73 7.15e-05 CAGCACAGCA GCGTTGCC GATTTTCAGC chr2L:6283426-6283546 50 8.42e-05 TCAAACAATT CTGTTGAC CAAATAAAAA chr2L:3121831-3121951 81 8.42e-05 TGCTGGTATT CTGTTGAC CTTGTCGAAA chr3R:6665438-6665558 57 8.42e-05 TTAGGTGACA CTGTTGAC AATCAATGTA chr3R:5016435-5016555 100 9.03e-05 TGTGCTCCTG CTGCTGCC ACCACCGCTG chr3R:20259570-20259690 3 1.18e-04 AA ATGTTGAC GAGGTAAACA chr3R:19182959-19183079 78 1.18e-04 acatacgtac atGTTGAC ATGTGGCATT chrX:1387337-1387457 110 1.31e-04 AATGGAAGCC CCGCTGCC AGC chr2R:23180959-23181079 39 1.49e-04 GCATTTGCCT TTGTTGAC ATTTGTAAAA chr2L:7528189-7528309 79 1.49e-04 GTTCATGGAG TTGTTGAC TCTGACTTTA chr3R:26908870-26908990 92 1.49e-04 CAAACACTGT TTGTTGAC GTTACCTTGA chr3L:20507690-20507810 98 1.49e-04 TAACAACAGT TTGTTGAC TCTTACGCAA chr3R:4975327-4975447 69 1.77e-04 GATCGCCTCT CTGTCGCC TGGTATTTTC chr3L:11516391-11516511 79 1.77e-04 GCCAAATACA CTGTCGCC AGTGAAACTA chrX:7300522-7300642 10 1.77e-04 TTTCCATTT TTGCTGCC GCTCTGTCTG chrX:19900124-19900244 58 1.77e-04 ACTTTATGCA TTGCTGCC GCACTTCACT chr2L:20852198-20852318 84 1.84e-04 AGCAAGCCAC ACGCTGCC AAAAGAAACG chr3R:26539306-26539426 80 1.96e-04 GCTGGCTGGC TCGTTGAC ATAGCAACAA chr2R:18567350-18567470 2 2.34e-04 A GTGTTGAC TCTAGATAGG chr2L:19370232-19370352 80 2.34e-04 ATGGGGGCGA GTGTTGAC GTCTTGATAA chrX:18238037-18238157 46 2.34e-04 TGTTGGCCTC GTGTTGAC TTTTGTGAAA chrX:12716109-12716229 98 2.34e-04 GCGGTCAGCC ATGTCGCC AGCGAACAGC chr2R:9402960-9403080 49 2.34e-04 ACTCTCTGCC CGGTTGCC GCACTTCACT chr2L:1399531-1399651 23 2.40e-04 GAGGCAAAAA GTGCTGCC GGCGATGAAA chrX:12739877-12739997 61 2.73e-04 AATAAAAGCA AGGTTGCC AAACTTCATT chr2R:7373922-7374042 18 2.92e-04 ACCGACTAAC TCGTCGCC AGGGGGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HYGTTGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21263332-21263452 8.6e-06 13_[+3]_99 chr3L:4193885-4194005 8.6e-06 89_[+3]_23 chr2R:13038976-13039096 8.6e-06 77_[+3]_35 chr3R:6426278-6426398 8.6e-06 74_[+3]_38 chr3R:6414767-6414887 8.6e-06 72_[+3]_40 chr3R:6429074-6429194 8.6e-06 65_[+3]_47 chr3R:6411516-6411636 8.6e-06 45_[+3]_67 chr3L:11003065-11003185 2.7e-05 2_[+3]_110 chr2R:21848651-21848771 2.7e-05 49_[+3]_63 chrX:12206355-12206475 2.7e-05 50_[+3]_62 chr2L:1068811-1068931 2.7e-05 61_[+3]_51 chr3R:18438344-18438464 3.9e-05 71_[+3]_41 chr2R:13041943-13042063 3.9e-05 73_[+3]_39 chr3L:10831182-10831302 3.9e-05 65_[+3]_47 chrX:12734516-12734636 3.9e-05 66_[+3]_46 chr2L:161934-162054 4.8e-05 27_[+3]_85 chr2R:16809956-16810076 4.8e-05 49_[+3]_63 chrX:7299733-7299853 4.8e-05 50_[+3]_62 chr2R:13038710-13038830 4.8e-05 21_[+3]_91 chrX:17774100-17774220 4.8e-05 34_[+3]_78 chr2L:3545221-3545341 4.8e-05 59_[+3]_53 chrX:7602203-7602323 4.8e-05 42_[+3]_70 chrX:12744097-12744217 4.8e-05 3_[+3]_109 chrX:12716974-12717094 4.8e-05 79_[+3]_33 chr2L:165642-165762 4.8e-05 60_[+3]_52 chr3L:8347490-8347610 5.7e-05 51_[+3]_61 chr2R:24315395-24315515 7.2e-05 69_[+3]_43 chr3R:21633862-21633982 7.2e-05 72_[+3]_40 chr2L:6283426-6283546 8.4e-05 49_[+3]_63 chr2L:3121831-3121951 8.4e-05 80_[+3]_32 chr3R:6665438-6665558 8.4e-05 56_[+3]_56 chr3R:5016435-5016555 9e-05 99_[+3]_13 chr3R:20259570-20259690 0.00012 2_[+3]_110 chr3R:19182959-19183079 0.00012 77_[+3]_35 chrX:1387337-1387457 0.00013 109_[+3]_3 chr2R:23180959-23181079 0.00015 38_[+3]_74 chr2L:7528189-7528309 0.00015 78_[+3]_34 chr3R:26908870-26908990 0.00015 91_[+3]_21 chr3L:20507690-20507810 0.00015 97_[+3]_15 chr3R:4975327-4975447 0.00018 68_[+3]_44 chr3L:11516391-11516511 0.00018 78_[+3]_34 chrX:7300522-7300642 0.00018 9_[+3]_103 chrX:19900124-19900244 0.00018 57_[+3]_55 chr2L:20852198-20852318 0.00018 83_[+3]_29 chr3R:26539306-26539426 0.0002 79_[+3]_33 chr2R:18567350-18567470 0.00023 1_[+3]_111 chr2L:19370232-19370352 0.00023 79_[+3]_33 chrX:18238037-18238157 0.00023 45_[+3]_67 chrX:12716109-12716229 0.00023 97_[+3]_15 chr2R:9402960-9403080 0.00023 48_[+3]_64 chr2L:1399531-1399651 0.00024 22_[+3]_90 chrX:12739877-12739997 0.00027 60_[+3]_52 chr2R:7373922-7374042 0.00029 17_[+3]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HYGTTGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HYGTTGCC width=8 seqs=53 chr3R:21263332-21263452 ( 14) CTGTTGCC 1 chr3L:4193885-4194005 ( 90) CTGTTGCC 1 chr2R:13038976-13039096 ( 78) CTGTTGCC 1 chr3R:6426278-6426398 ( 75) CTGTTGCC 1 chr3R:6414767-6414887 ( 73) CTGTTGCC 1 chr3R:6429074-6429194 ( 66) CTGTTGCC 1 chr3R:6411516-6411636 ( 46) CTGTTGCC 1 chr3L:11003065-11003185 ( 3) ATGTTGCC 1 chr2R:21848651-21848771 ( 50) ATGTTGCC 1 chrX:12206355-12206475 ( 51) CCGTTGCC 1 chr2L:1068811-1068931 ( 62) ATGTTGCC 1 chr3R:18438344-18438464 ( 72) TTGTTGCC 1 chr2R:13041943-13042063 ( 74) TTGTTGCC 1 chr3L:10831182-10831302 ( 66) TTGTTGCC 1 chrX:12734516-12734636 ( 67) TTGTTGCC 1 chr2L:161934-162054 ( 28) ACGTTGCC 1 chr2R:16809956-16810076 ( 50) ACGTTGCC 1 chrX:7299733-7299853 ( 51) ACGTTGCC 1 chr2R:13038710-13038830 ( 22) ACGTTGCC 1 chrX:17774100-17774220 ( 35) ACGTTGCC 1 chr2L:3545221-3545341 ( 60) ACGTTGCC 1 chrX:7602203-7602323 ( 43) ACGTTGCC 1 chrX:12744097-12744217 ( 4) ACGTTGCC 1 chrX:12716974-12717094 ( 80) ACGTTGCC 1 chr2L:165642-165762 ( 61) ACGTTGCC 1 chr3L:8347490-8347610 ( 52) TCGTTGCC 1 chr2R:24315395-24315515 ( 70) GCGTTGCC 1 chr3R:21633862-21633982 ( 73) GCGTTGCC 1 chr2L:6283426-6283546 ( 50) CTGTTGAC 1 chr2L:3121831-3121951 ( 81) CTGTTGAC 1 chr3R:6665438-6665558 ( 57) CTGTTGAC 1 chr3R:5016435-5016555 ( 100) CTGCTGCC 1 chr3R:20259570-20259690 ( 3) ATGTTGAC 1 chr3R:19182959-19183079 ( 78) ATGTTGAC 1 chrX:1387337-1387457 ( 110) CCGCTGCC 1 chr2R:23180959-23181079 ( 39) TTGTTGAC 1 chr2L:7528189-7528309 ( 79) TTGTTGAC 1 chr3R:26908870-26908990 ( 92) TTGTTGAC 1 chr3L:20507690-20507810 ( 98) TTGTTGAC 1 chr3R:4975327-4975447 ( 69) CTGTCGCC 1 chr3L:11516391-11516511 ( 79) CTGTCGCC 1 chrX:7300522-7300642 ( 10) TTGCTGCC 1 chrX:19900124-19900244 ( 58) TTGCTGCC 1 chr2L:20852198-20852318 ( 84) ACGCTGCC 1 chr3R:26539306-26539426 ( 80) TCGTTGAC 1 chr2R:18567350-18567470 ( 2) GTGTTGAC 1 chr2L:19370232-19370352 ( 80) GTGTTGAC 1 chrX:18238037-18238157 ( 46) GTGTTGAC 1 chrX:12716109-12716229 ( 98) ATGTCGCC 1 chr2R:9402960-9403080 ( 49) CGGTTGCC 1 chr2L:1399531-1399651 ( 23) GTGCTGCC 1 chrX:12739877-12739997 ( 61) AGGTTGCC 1 chr2R:7373922-7374042 ( 18) TCGTCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HYGTTGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 5.4e-009 16 56 -85 -23 -1237 73 -243 111 -1237 -1237 229 -1237 -1237 -85 -1237 162 -1237 -144 -1237 168 -1237 -1237 229 -1237 -31 188 -1237 -1237 -1237 229 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HYGTTGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 5.4e-009 0.339623 0.301887 0.113208 0.245283 0.000000 0.339623 0.037736 0.622642 0.000000 0.000000 1.000000 0.000000 0.000000 0.113208 0.000000 0.886792 0.000000 0.075472 0.000000 0.924528 0.000000 0.000000 1.000000 0.000000 0.245283 0.754717 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HYGTTGCC MEME-3 regular expression -------------------------------------------------------------------------------- [ACT][TC]GTTG[CA]C -------------------------------------------------------------------------------- Time 19.33 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTRTTTR MEME-4 width = 8 sites = 69 llr = 544 E-value = 7.5e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTRTTTR MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::4:::3 pos.-specific C :::::::: probability G :2:6:::4 matrix T a8a:aaa2 bits 2.3 2.1 1.8 * * * * 1.6 * * *** Relative 1.4 * * *** Entropy 1.1 ******* (11.4 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTG consensus G A A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9309640-9309760 53 2.37e-05 ACTCATTTGG TTTGTTTG TGGCTCTATT chr3L:14354648-14354768 40 2.37e-05 TCACTCGTCG TTTGTTTG TTGAGAAAAC chr2R:8683430-8683550 15 2.37e-05 GCCGCATTAA TTTGTTTG AGCCTTTGAC chr2L:3397732-3397852 34 2.37e-05 GCAAACTCGG TTTGTTTG CTTGTTTGTT chr3L:16429599-16429719 33 2.37e-05 AATGTTTCTT TTTGTTTG TTCCATAACA chr3L:4615203-4615323 24 2.37e-05 GATATAAAtg tttgtttg tttgtctgtc chr3L:20275993-20276113 60 2.37e-05 GTGTGGGAGC TTTGTTTG ATTAATAGCC chr2R:13305674-13305794 50 2.37e-05 ATTCGGGCCT TTTGTTTG TGGCTGGTCA chr3R:6426278-6426398 38 2.37e-05 AACAGCTTTG TTTGTTTG CTTTACATTT chr2R:24315395-24315515 45 2.37e-05 ACTTAATATT TTTGTTTG GCAGACGTTC chr2L:1068811-1068931 34 2.37e-05 GGTTTCTGTT TTTGTTTG CAACACGTTC chr3R:25544055-25544175 109 5.90e-05 TGTGTGAAGT TTTATTTG TCAA chrX:2462112-2462232 42 5.90e-05 AATTTTTGTT TTTATTTG TTTCGCTTAT chr3L:5992380-5992500 42 5.90e-05 GCTTAACGAC TTTATTTG CCCAACTTGG chr3R:23947147-23947267 104 9.43e-05 CCACCGACTG TTTGTTTA TTTCATGTT chrX:11823209-11823329 39 9.43e-05 GATTGTTCAA TTTGTTTA TTTATTGTCT chrX:2653650-2653770 11 9.43e-05 GCCTTGTTTA TTTGTTTA CATTAAGCAA chrX:18101195-18101315 62 9.43e-05 GTCGCCCGAT TTTGTTTA ATTTACTTCC chr2L:12641577-12641697 65 9.43e-05 ACGGACGAAA TTTGTTTA GACATCGATA chr3R:6182659-6182779 72 9.43e-05 TGGCATTGCC TTTGTTTA CCAAACAATG chr3R:15677762-15677882 28 9.43e-05 TGTAATGCTG TTTGTTTA TGCTCTCAAT chr2L:4475522-4475642 36 9.43e-05 TTTTCTCGTA TTTGTTTA TATAAACAAA chr3L:13032282-13032402 107 9.43e-05 AACGCCAATG TTTGTTTA TGCCaa chr3L:20507690-20507810 68 9.43e-05 GCTCTTCTTA TTTGTTTA GAAGCTGAAA chr2L:16451983-16452103 64 9.43e-05 TACAAGCCAC TTTGTTTA ATTGGTACAC chr2L:1735279-1735399 9 9.43e-05 CTGAGAAT TTTGTTTA TTTAGAATGT chrX:10582188-10582308 52 1.11e-04 TGTGTCTGTC TGTGTTTG GAAACTAAAC chr3R:17828798-17828918 56 1.11e-04 GTGGAATGTT TGTGTTTG TATTTGTGGG chr2R:20126190-20126310 89 1.11e-04 CAAAGTATTG TGTGTTTG TTTATTGAAT chr2R:14787904-14788024 111 1.11e-04 CTAGTATTTG TGTGTTTG CC chr3R:10521358-10521478 35 1.11e-04 AGACAACTTC TGTGTTTG CTGTTCTGGT chr3L:8379327-8379447 99 1.11e-04 tgtgtgttta tgtgtttg tCCACAGAGA chrX:12716109-12716229 39 1.11e-04 TTCTACGCCA TGTGTTTG CCCGTTAGGT chr3R:6414767-6414887 16 1.11e-04 GCTGTGCGTT TGTGTTTG TGTAACTAGT chr3R:29069812-29069932 5 1.11e-04 TGTG TGTGTTTG GGGAGCCATA chr3R:13448491-13448611 90 1.97e-04 AAATAAGGTT TTTATTTA TGGGCTAGCA chr3R:6241403-6241523 90 1.97e-04 aaattattta tttattta gtttaataat chr3R:18438344-18438464 19 1.97e-04 GATTGCAGTT TTTATTTA CACTTGCGCT chr2L:8080788-8080908 111 1.97e-04 CTACCAATAC TTTGTTTT AA chrX:362247-362367 24 1.97e-04 TCGGCAATTA TTTATTTA CACTACCAGG chr3L:7592238-7592358 28 1.97e-04 TTAATCTTTC TTTGTttt aatatttcta chr2L:7528189-7528309 93 1.97e-04 TGACTCTGAC TTTATTTA AATTAAGCAA chrX:17473446-17473566 19 1.97e-04 ttttagttta tttattta tgatatttaC chr3L:4272293-4272413 97 1.97e-04 AGCTGCGTTC TTTATTTA TTCATTTGCC chr3R:5031996-5032116 49 1.97e-04 GCCTTCATTG TTTGTTTT CACATAATTA chr2L:12049263-12049383 46 1.97e-04 AATTGAATTG TTTATTTA TGTTTTGACA chrX:15893945-15894065 15 1.97e-04 TTAGAGTCGA TTTATTTA TTTTTCATAG chr2L:1094824-1094944 2 1.97e-04 A TTTATTTA TAACATTTAA chr3R:20263839-20263959 45 2.22e-04 TCCGTCTGGC TGTATTTG TATCTCAAAG chr3L:12045571-12045691 34 2.22e-04 AGTATCTATC TGTATTTG CCCGACGCTT chr3L:16640609-16640729 19 2.22e-04 GATAAGCCAC TGTATTTG CTCAATGGGC chrX:3024681-3024801 81 2.22e-04 ttttgtgcct tgtatttG TATGGCTTGC chr3L:19077368-19077488 11 2.22e-04 TATATGGCGC TGTATTTG CTTGAAAATG chr3R:6432460-6432580 17 2.22e-04 GTTAATGGTG TGTATTTG GGTGAAGTTT chr3R:26900099-26900219 93 2.97e-04 TATTTTATTT TTTATTTT ATACTTTTTA chr3R:18785924-18786044 13 2.97e-04 TCGCTAACTA TTTATTTT AGCACTTTGA chr2R:10485588-10485708 91 2.97e-04 GTTTTCCATG TTTATTTT CCTATTCCAA chr3L:1168562-1168682 59 2.97e-04 TCGTACATAT TTTATTTT ATATTTTATT chr2R:22540004-22540124 110 2.97e-04 TACATGATGG TTTATTTT TAA chr3R:13548173-13548293 101 2.97e-04 TTAAGTAATA TTTATTTT TATAATTTTT chr3R:30106246-30106366 47 2.97e-04 GTCGGCTATA TTTATTTT TGTTTCGTGG chrX:19900124-19900244 14 2.97e-04 GCTAGCTTTT TTTATTTT CAATTTTTTC chrX:12206355-12206475 19 2.97e-04 CAACAGCTGt tttatttt ctttttttct chrX:12716974-12717094 110 2.97e-04 GAACCATTCT TTTATTTT TGT chr3R:31608413-31608533 113 3.58e-04 AGTTGTTACT TGTGTTTT chr2R:12729329-12729449 20 3.58e-04 GCAGTAGCAT TGTATTTA CATGGCACCC chr2R:17272589-17272709 48 4.10e-04 CACAGCTGCC TTTGTGTG GACTCAGCTT chr2R:20063359-20063479 59 4.35e-04 GAAACGCTTT TTTATGTG CCCAAGCTAA chr2L:12465802-12465922 77 4.60e-04 TATTTGTATA TTTGTGTA TATAGTGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9309640-9309760 2.4e-05 52_[+4]_60 chr3L:14354648-14354768 2.4e-05 39_[+4]_73 chr2R:8683430-8683550 2.4e-05 14_[+4]_98 chr2L:3397732-3397852 2.4e-05 33_[+4]_79 chr3L:16429599-16429719 2.4e-05 32_[+4]_80 chr3L:4615203-4615323 2.4e-05 23_[+4]_89 chr3L:20275993-20276113 2.4e-05 59_[+4]_53 chr2R:13305674-13305794 2.4e-05 49_[+4]_63 chr3R:6426278-6426398 2.4e-05 37_[+4]_75 chr2R:24315395-24315515 2.4e-05 44_[+4]_68 chr2L:1068811-1068931 2.4e-05 33_[+4]_79 chr3R:25544055-25544175 5.9e-05 108_[+4]_4 chrX:2462112-2462232 5.9e-05 41_[+4]_71 chr3L:5992380-5992500 5.9e-05 41_[+4]_71 chr3R:23947147-23947267 9.4e-05 103_[+4]_9 chrX:11823209-11823329 9.4e-05 38_[+4]_74 chrX:2653650-2653770 9.4e-05 10_[+4]_102 chrX:18101195-18101315 9.4e-05 61_[+4]_51 chr2L:12641577-12641697 9.4e-05 64_[+4]_48 chr3R:6182659-6182779 9.4e-05 71_[+4]_41 chr3R:15677762-15677882 9.4e-05 27_[+4]_85 chr2L:4475522-4475642 9.4e-05 35_[+4]_77 chr3L:13032282-13032402 9.4e-05 106_[+4]_6 chr3L:20507690-20507810 9.4e-05 67_[+4]_45 chr2L:16451983-16452103 9.4e-05 63_[+4]_49 chr2L:1735279-1735399 9.4e-05 8_[+4]_104 chrX:10582188-10582308 0.00011 51_[+4]_61 chr3R:17828798-17828918 0.00011 55_[+4]_57 chr2R:20126190-20126310 0.00011 88_[+4]_24 chr2R:14787904-14788024 0.00011 110_[+4]_2 chr3R:10521358-10521478 0.00011 34_[+4]_78 chr3L:8379327-8379447 0.00011 98_[+4]_14 chrX:12716109-12716229 0.00011 38_[+4]_74 chr3R:6414767-6414887 0.00011 15_[+4]_97 chr3R:29069812-29069932 0.00011 4_[+4]_108 chr3R:13448491-13448611 0.0002 89_[+4]_23 chr3R:6241403-6241523 0.0002 89_[+4]_23 chr3R:18438344-18438464 0.0002 18_[+4]_94 chr2L:8080788-8080908 0.0002 110_[+4]_2 chrX:362247-362367 0.0002 23_[+4]_89 chr3L:7592238-7592358 0.0002 27_[+4]_85 chr2L:7528189-7528309 0.0002 92_[+4]_20 chrX:17473446-17473566 0.0002 18_[+4]_94 chr3L:4272293-4272413 0.0002 96_[+4]_16 chr3R:5031996-5032116 0.0002 48_[+4]_64 chr2L:12049263-12049383 0.0002 45_[+4]_67 chrX:15893945-15894065 0.0002 14_[+4]_98 chr2L:1094824-1094944 0.0002 1_[+4]_111 chr3R:20263839-20263959 0.00022 44_[+4]_68 chr3L:12045571-12045691 0.00022 33_[+4]_79 chr3L:16640609-16640729 0.00022 18_[+4]_94 chrX:3024681-3024801 0.00022 80_[+4]_32 chr3L:19077368-19077488 0.00022 10_[+4]_102 chr3R:6432460-6432580 0.00022 16_[+4]_96 chr3R:26900099-26900219 0.0003 92_[+4]_20 chr3R:18785924-18786044 0.0003 12_[+4]_100 chr2R:10485588-10485708 0.0003 90_[+4]_22 chr3L:1168562-1168682 0.0003 58_[+4]_54 chr2R:22540004-22540124 0.0003 109_[+4]_3 chr3R:13548173-13548293 0.0003 100_[+4]_12 chr3R:30106246-30106366 0.0003 46_[+4]_66 chrX:19900124-19900244 0.0003 13_[+4]_99 chrX:12206355-12206475 0.0003 18_[+4]_94 chrX:12716974-12717094 0.0003 109_[+4]_3 chr3R:31608413-31608533 0.00036 112_[+4] chr2R:12729329-12729449 0.00036 19_[+4]_93 chr2R:17272589-17272709 0.00041 47_[+4]_65 chr2R:20063359-20063479 0.00043 58_[+4]_54 chr2L:12465802-12465922 0.00046 76_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTRTTTR width=8 seqs=69 chr2R:9309640-9309760 ( 53) TTTGTTTG 1 chr3L:14354648-14354768 ( 40) TTTGTTTG 1 chr2R:8683430-8683550 ( 15) TTTGTTTG 1 chr2L:3397732-3397852 ( 34) TTTGTTTG 1 chr3L:16429599-16429719 ( 33) TTTGTTTG 1 chr3L:4615203-4615323 ( 24) TTTGTTTG 1 chr3L:20275993-20276113 ( 60) TTTGTTTG 1 chr2R:13305674-13305794 ( 50) TTTGTTTG 1 chr3R:6426278-6426398 ( 38) TTTGTTTG 1 chr2R:24315395-24315515 ( 45) TTTGTTTG 1 chr2L:1068811-1068931 ( 34) TTTGTTTG 1 chr3R:25544055-25544175 ( 109) TTTATTTG 1 chrX:2462112-2462232 ( 42) TTTATTTG 1 chr3L:5992380-5992500 ( 42) TTTATTTG 1 chr3R:23947147-23947267 ( 104) TTTGTTTA 1 chrX:11823209-11823329 ( 39) TTTGTTTA 1 chrX:2653650-2653770 ( 11) TTTGTTTA 1 chrX:18101195-18101315 ( 62) TTTGTTTA 1 chr2L:12641577-12641697 ( 65) TTTGTTTA 1 chr3R:6182659-6182779 ( 72) TTTGTTTA 1 chr3R:15677762-15677882 ( 28) TTTGTTTA 1 chr2L:4475522-4475642 ( 36) TTTGTTTA 1 chr3L:13032282-13032402 ( 107) TTTGTTTA 1 chr3L:20507690-20507810 ( 68) TTTGTTTA 1 chr2L:16451983-16452103 ( 64) TTTGTTTA 1 chr2L:1735279-1735399 ( 9) TTTGTTTA 1 chrX:10582188-10582308 ( 52) TGTGTTTG 1 chr3R:17828798-17828918 ( 56) TGTGTTTG 1 chr2R:20126190-20126310 ( 89) TGTGTTTG 1 chr2R:14787904-14788024 ( 111) TGTGTTTG 1 chr3R:10521358-10521478 ( 35) TGTGTTTG 1 chr3L:8379327-8379447 ( 99) TGTGTTTG 1 chrX:12716109-12716229 ( 39) TGTGTTTG 1 chr3R:6414767-6414887 ( 16) TGTGTTTG 1 chr3R:29069812-29069932 ( 5) TGTGTTTG 1 chr3R:13448491-13448611 ( 90) TTTATTTA 1 chr3R:6241403-6241523 ( 90) TTTATTTA 1 chr3R:18438344-18438464 ( 19) TTTATTTA 1 chr2L:8080788-8080908 ( 111) TTTGTTTT 1 chrX:362247-362367 ( 24) TTTATTTA 1 chr3L:7592238-7592358 ( 28) TTTGTTTT 1 chr2L:7528189-7528309 ( 93) TTTATTTA 1 chrX:17473446-17473566 ( 19) TTTATTTA 1 chr3L:4272293-4272413 ( 97) TTTATTTA 1 chr3R:5031996-5032116 ( 49) TTTGTTTT 1 chr2L:12049263-12049383 ( 46) TTTATTTA 1 chrX:15893945-15894065 ( 15) TTTATTTA 1 chr2L:1094824-1094944 ( 2) TTTATTTA 1 chr3R:20263839-20263959 ( 45) TGTATTTG 1 chr3L:12045571-12045691 ( 34) TGTATTTG 1 chr3L:16640609-16640729 ( 19) TGTATTTG 1 chrX:3024681-3024801 ( 81) TGTATTTG 1 chr3L:19077368-19077488 ( 11) TGTATTTG 1 chr3R:6432460-6432580 ( 17) TGTATTTG 1 chr3R:26900099-26900219 ( 93) TTTATTTT 1 chr3R:18785924-18786044 ( 13) TTTATTTT 1 chr2R:10485588-10485708 ( 91) TTTATTTT 1 chr3L:1168562-1168682 ( 59) TTTATTTT 1 chr2R:22540004-22540124 ( 110) TTTATTTT 1 chr3R:13548173-13548293 ( 101) TTTATTTT 1 chr3R:30106246-30106366 ( 47) TTTATTTT 1 chrX:19900124-19900244 ( 14) TTTATTTT 1 chrX:12206355-12206475 ( 19) TTTATTTT 1 chrX:12716974-12717094 ( 110) TTTATTTT 1 chr3R:31608413-31608533 ( 113) TGTGTTTT 1 chr2R:12729329-12729449 ( 20) TGTATTTA 1 chr2R:17272589-17272709 ( 48) TTTGTGTG 1 chr2R:20063359-20063479 ( 59) TTTATGTG 1 chr2L:12465802-12465922 ( 77) TTTGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4486 E= 7.5e-013 -1275 -1275 -1275 180 -1275 -1275 27 139 -1275 -1275 -1275 180 57 -1275 143 -1275 -1275 -1275 -1275 180 -1275 -1275 -223 173 -1275 -1275 -1275 180 20 -1275 114 -51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 7.5e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.246377 0.753623 0.000000 0.000000 0.000000 1.000000 0.449275 0.000000 0.550725 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.043478 0.956522 0.000000 0.000000 0.000000 1.000000 0.347826 0.000000 0.449275 0.202899 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTR MEME-4 regular expression -------------------------------------------------------------------------------- T[TG]T[GA]TTT[GAT] -------------------------------------------------------------------------------- Time 25.14 secs. ******************************************************************************** ******************************************************************************** MOTIF GCRSWGCR MEME-5 width = 8 sites = 44 llr = 359 E-value = 2.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRSWGCR MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::5:4::5 pos.-specific C :a:6::a: probability G 7:54:a:4 matrix T 3:::6::1 bits 2.3 * ** 2.1 * ** 1.8 * ** 1.6 * ** Relative 1.4 ** * ** Entropy 1.1 ** * ** (11.8 bits) 0.9 **** ** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCTGCA consensus T AGA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSWGCR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18567350-18567470 100 4.30e-06 TAAACAAGCT GCGCTGCG TATCGCTTGG chr3R:6414767-6414887 65 4.30e-06 GGCATTCTTG GCGCTGCG CTGTTGCCGC chr2R:22200021-22200141 110 1.07e-05 GAAATGCCTA GCGCTGCA GTG chrX:7300522-7300642 74 1.07e-05 ACAAAGTGTG GCGCTGCA AAAGAGCTGT chr2R:7373922-7374042 31 1.07e-05 TCGCCAGGGG GCGCTGCA AGGGGAATCC chr3L:10741298-10741418 112 1.52e-05 TATGAGTGAT GCGCAGCG A chr3L:1168562-1168682 90 1.52e-05 TCGCTCCGCT GCGCAGCG CCATAAGGGC chr3L:19073330-19073450 54 1.52e-05 CCAGGTCGTA GCGCAGCG AATCCGGTGC chr2R:13038710-13038830 67 1.52e-05 AAAAAGTGGC GCGCAGCG AAGCGAAGTA chr2R:7951917-7952037 4 2.59e-05 GTG GCGGTGCG ACATTGAACC chr2R:13474930-13475050 27 4.84e-05 CAAACGACAC GCACTGCA GGGCAAGAAA chrX:3024681-3024801 22 4.84e-05 GCCAATTGAA GCACTGCA ACCACTTTGC chr2R:6594964-6595084 2 4.84e-05 A GCACTGCA AGATCCTTCA chr3L:8604471-8604591 84 6.60e-05 CGTGCAGCAA GCAGTGCG CACTGCTTCA chr2L:6252391-6252511 112 8.26e-05 GTCGAAGAGA GCGGAGCA C chr2R:22666708-22666828 99 8.26e-05 TGACATTATT GCACAGCA CACGACAAAA chr2L:17572986-17573106 3 8.26e-05 AG GCACAGCA GCAGCTGAAA chr3R:21633862-21633982 65 8.26e-05 AGTTGCAGCA GCACAGCA GCGTTGCCGA chr2R:20126190-20126310 69 9.21e-05 GTGACTATCT GCAGTGCA ATCAAAGTAT chr3R:9889087-9889207 30 9.21e-05 GCAGTACAGT GCAGTGCA TGCATATAGC chrX:7602203-7602323 8 9.21e-05 TTTTTAT GCAGTGCA GCCGCGTGAT chr3L:15706327-15706447 101 9.81e-05 ATGTTTCTCT TCGCTGCG CCCTGCGGCA chr2R:8683430-8683550 82 9.81e-05 TTAGCACGCC TCGCTGCG TCCACTCGCT chr2L:161934-162054 60 1.05e-04 CCGCAGCGAG GCAGAGCG AGAGCAAGCG chr3R:31309395-31309515 99 1.05e-04 AAATAAACAC GCAGAGCG GCAAACTCGT chrX:12742490-12742610 5 1.05e-04 GTCT GCAGAGCG AACCGCAACC chr2R:13152003-13152123 102 1.14e-04 TTTCTTGATG TCGCTGCA CCCGCATTTG chr3R:6665438-6665558 85 1.14e-04 AACACCACAG TCGCTGCA GCAGAATTTA chrX:1387337-1387457 79 1.30e-04 GCACTGCTCA GCGCTGCT ACGCTGGAGT chrX:13645182-13645302 24 1.30e-04 TAAAGCAACT GCAGAGCA AATTTACCAA chrX:10539545-10539665 104 1.30e-04 TTATGAGTTT GCAGAGCA TAACCAACA chr2R:22546786-22546906 26 1.36e-04 AGTGCCGCAG TCGCAGCG ACGTCGACGG chr3L:11247569-11247689 77 1.51e-04 CTGGTTTGTG TCGGTGCG GGGGGCAGTG chr3L:754795-754915 88 1.51e-04 TCCATGTGCA TCGGTGCG TTTTAGTCGA chrX:581996-582116 107 1.51e-04 GCTCTCCTGT TCACTGCG TGTGCT chrX:362247-362367 6 1.89e-04 TTTTT TCGGTGCA TCGGCAATTA chr3R:13548173-13548293 63 1.89e-04 TATGCATTAA GCGCAGCT TAAGATCATG chr2L:1068811-1068931 50 1.89e-04 TGCAACACGT TCACTGCA TGCCATGTTG chrX:12744097-12744217 17 2.29e-04 TTGCCGTTTT TCAGTGCG AAATAAATCG chr2R:17272589-17272709 37 2.82e-04 TCAGATGCCA GCACAGCT GCCTTTGTGT chr3R:24301569-24301689 84 2.82e-04 TTGGATGTAT GCACAGCT GTCACTAAGA chr3R:6203169-6203289 31 2.82e-04 TTTCCCCAGC GCGGAGCT CTCCACTCCG chr2L:7292143-7292263 91 2.82e-04 GTATTTTTTC TCAGTGCA ACGGCTTAGG chr2L:1057652-1057772 72 3.40e-04 CGTCGCAGGG GCGCGGCA TGGCGTGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSWGCR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18567350-18567470 4.3e-06 99_[+5]_13 chr3R:6414767-6414887 4.3e-06 64_[+5]_48 chr2R:22200021-22200141 1.1e-05 109_[+5]_3 chrX:7300522-7300642 1.1e-05 73_[+5]_39 chr2R:7373922-7374042 1.1e-05 30_[+5]_82 chr3L:10741298-10741418 1.5e-05 111_[+5]_1 chr3L:1168562-1168682 1.5e-05 89_[+5]_23 chr3L:19073330-19073450 1.5e-05 53_[+5]_59 chr2R:13038710-13038830 1.5e-05 66_[+5]_46 chr2R:7951917-7952037 2.6e-05 3_[+5]_109 chr2R:13474930-13475050 4.8e-05 26_[+5]_86 chrX:3024681-3024801 4.8e-05 21_[+5]_91 chr2R:6594964-6595084 4.8e-05 1_[+5]_111 chr3L:8604471-8604591 6.6e-05 83_[+5]_29 chr2L:6252391-6252511 8.3e-05 111_[+5]_1 chr2R:22666708-22666828 8.3e-05 98_[+5]_14 chr2L:17572986-17573106 8.3e-05 2_[+5]_110 chr3R:21633862-21633982 8.3e-05 64_[+5]_48 chr2R:20126190-20126310 9.2e-05 68_[+5]_44 chr3R:9889087-9889207 9.2e-05 29_[+5]_83 chrX:7602203-7602323 9.2e-05 7_[+5]_105 chr3L:15706327-15706447 9.8e-05 100_[+5]_12 chr2R:8683430-8683550 9.8e-05 81_[+5]_31 chr2L:161934-162054 0.0001 59_[+5]_53 chr3R:31309395-31309515 0.0001 98_[+5]_14 chrX:12742490-12742610 0.0001 4_[+5]_108 chr2R:13152003-13152123 0.00011 101_[+5]_11 chr3R:6665438-6665558 0.00011 84_[+5]_28 chrX:1387337-1387457 0.00013 78_[+5]_34 chrX:13645182-13645302 0.00013 23_[+5]_89 chrX:10539545-10539665 0.00013 103_[+5]_9 chr2R:22546786-22546906 0.00014 25_[+5]_87 chr3L:11247569-11247689 0.00015 76_[+5]_36 chr3L:754795-754915 0.00015 87_[+5]_25 chrX:581996-582116 0.00015 106_[+5]_6 chrX:362247-362367 0.00019 5_[+5]_107 chr3R:13548173-13548293 0.00019 62_[+5]_50 chr2L:1068811-1068931 0.00019 49_[+5]_63 chrX:12744097-12744217 0.00023 16_[+5]_96 chr2R:17272589-17272709 0.00028 36_[+5]_76 chr3R:24301569-24301689 0.00028 83_[+5]_29 chr3R:6203169-6203289 0.00028 30_[+5]_82 chr2L:7292143-7292263 0.00028 90_[+5]_22 chr2L:1057652-1057772 0.00034 71_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSWGCR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRSWGCR width=8 seqs=44 chr2R:18567350-18567470 ( 100) GCGCTGCG 1 chr3R:6414767-6414887 ( 65) GCGCTGCG 1 chr2R:22200021-22200141 ( 110) GCGCTGCA 1 chrX:7300522-7300642 ( 74) GCGCTGCA 1 chr2R:7373922-7374042 ( 31) GCGCTGCA 1 chr3L:10741298-10741418 ( 112) GCGCAGCG 1 chr3L:1168562-1168682 ( 90) GCGCAGCG 1 chr3L:19073330-19073450 ( 54) GCGCAGCG 1 chr2R:13038710-13038830 ( 67) GCGCAGCG 1 chr2R:7951917-7952037 ( 4) GCGGTGCG 1 chr2R:13474930-13475050 ( 27) GCACTGCA 1 chrX:3024681-3024801 ( 22) GCACTGCA 1 chr2R:6594964-6595084 ( 2) GCACTGCA 1 chr3L:8604471-8604591 ( 84) GCAGTGCG 1 chr2L:6252391-6252511 ( 112) GCGGAGCA 1 chr2R:22666708-22666828 ( 99) GCACAGCA 1 chr2L:17572986-17573106 ( 3) GCACAGCA 1 chr3R:21633862-21633982 ( 65) GCACAGCA 1 chr2R:20126190-20126310 ( 69) GCAGTGCA 1 chr3R:9889087-9889207 ( 30) GCAGTGCA 1 chrX:7602203-7602323 ( 8) GCAGTGCA 1 chr3L:15706327-15706447 ( 101) TCGCTGCG 1 chr2R:8683430-8683550 ( 82) TCGCTGCG 1 chr2L:161934-162054 ( 60) GCAGAGCG 1 chr3R:31309395-31309515 ( 99) GCAGAGCG 1 chrX:12742490-12742610 ( 5) GCAGAGCG 1 chr2R:13152003-13152123 ( 102) TCGCTGCA 1 chr3R:6665438-6665558 ( 85) TCGCTGCA 1 chrX:1387337-1387457 ( 79) GCGCTGCT 1 chrX:13645182-13645302 ( 24) GCAGAGCA 1 chrX:10539545-10539665 ( 104) GCAGAGCA 1 chr2R:22546786-22546906 ( 26) TCGCAGCG 1 chr3L:11247569-11247689 ( 77) TCGGTGCG 1 chr3L:754795-754915 ( 88) TCGGTGCG 1 chrX:581996-582116 ( 107) TCACTGCG 1 chrX:362247-362367 ( 6) TCGGTGCA 1 chr3R:13548173-13548293 ( 63) GCGCAGCT 1 chr2L:1068811-1068931 ( 50) TCACTGCA 1 chrX:12744097-12744217 ( 17) TCAGTGCG 1 chr2R:17272589-17272709 ( 37) GCACAGCT 1 chr3R:24301569-24301689 ( 84) GCACAGCT 1 chr3R:6203169-6203289 ( 31) GCGGAGCT 1 chr2L:7292143-7292263 ( 91) TCAGTGCA 1 chr2L:1057652-1057772 ( 72) GCGCGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSWGCR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3519 E= 2.2e+002 -1210 -1210 183 -8 -1210 229 -1210 -1210 65 -1210 136 -1210 -1210 158 92 -1210 43 -1210 -316 98 -1210 -1210 229 -1210 -1210 229 -1210 -1210 65 -1210 100 -134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSWGCR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 2.2e+002 0.000000 0.000000 0.727273 0.272727 0.000000 1.000000 0.000000 0.000000 0.477273 0.000000 0.522727 0.000000 0.000000 0.613636 0.386364 0.000000 0.409091 0.000000 0.022727 0.568182 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.477273 0.000000 0.409091 0.113636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSWGCR MEME-5 regular expression -------------------------------------------------------------------------------- [GT]C[GA][CG][TA]GC[AG] -------------------------------------------------------------------------------- Time 30.99 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1057652-1057772 6.74e-04 55_[+2(1.61e-05)]_57 chrX:10540588-10540708 5.64e-02 48_[+2(1.61e-05)]_64 chr3R:6411516-6411636 9.79e-03 45_[+3(8.56e-06)]_67 chr3R:6429074-6429194 3.27e-02 65_[+3(8.56e-06)]_47 chr3L:7982061-7982181 2.99e-03 48_[+2(9.43e-06)]_64 chr2L:1422072-1422192 1.75e-01 37_[+2(8.05e-05)]_75 chr2L:165642-165762 3.26e-02 60_[+3(4.84e-05)]_52 chrX:7337569-7337689 2.38e-01 120 chrX:12739877-12739997 9.84e-02 120 chrX:12716974-12717094 1.84e-02 79_[+3(4.84e-05)]_33 chr3R:6432460-6432580 1.85e-03 33_[+2(9.43e-06)]_79 chrX:12733979-12734099 8.19e-04 86_[+2(9.43e-06)]_26 chr2R:7373922-7374042 2.23e-05 30_[+5(1.07e-05)]_24_[+2(1.61e-05)]_\ 50 chr3R:29069812-29069932 1.87e-03 51_[+2(9.43e-06)]_61 chrX:12744097-12744217 3.27e-04 3_[+3(4.84e-05)]_51_[+2(7.04e-05)]_\ 50 chr3R:6428227-6428347 1.23e-02 74_[+2(3.02e-05)]_38 chrX:7602203-7602323 8.36e-03 7_[+5(9.21e-05)]_27_[+3(4.84e-05)]_\ 70 chr3L:10525832-10525952 7.18e-03 56_[+2(9.43e-06)]_56 chr2L:3545221-3545341 1.41e-01 59_[+3(4.84e-05)]_53 chr2L:1068811-1068931 8.24e-05 33_[+4(2.37e-05)]_20_[+3(2.73e-05)]_\ 51 chr3L:22837712-22837832 4.48e-03 35_[+2(9.43e-06)]_77 chrX:12206355-12206475 2.33e-02 50_[+3(2.73e-05)]_62 chr3L:7988193-7988313 2.34e-01 25_[+2(3.02e-05)]_87 chrX:19900124-19900244 2.65e-02 120 chrX:17774100-17774220 1.57e-01 34_[+3(4.84e-05)]_78 chr3R:21633862-21633982 2.06e-03 64_[+5(8.26e-05)]_[+3(7.15e-05)]_40 chrX:10539545-10539665 1.68e-03 49_[+2(1.61e-05)]_63 chr2L:1399531-1399651 1.35e-02 60_[+1(2.19e-05)]_52 chr2R:9402960-9403080 1.95e-02 120 chrX:12750684-12750804 1.40e-03 54_[+2(9.43e-06)]_58 chr2R:13038710-13038830 1.07e-03 21_[+3(4.84e-05)]_37_[+5(1.52e-05)]_\ 46 chr2R:24315395-24315515 9.47e-03 44_[+4(2.37e-05)]_17_[+3(7.15e-05)]_\ 43 chrX:12734516-12734636 2.12e-02 66_[+3(3.94e-05)]_46 chr3R:6414767-6414887 1.09e-05 64_[+5(4.30e-06)]_[+3(8.56e-06)]_40 chrX:12716109-12716229 6.07e-03 120 chr3R:6426278-6426398 4.70e-06 33_[+4(2.37e-05)]_33_[+3(8.56e-06)]_\ 38 chrX:7300522-7300642 5.24e-04 73_[+5(1.07e-05)]_39 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chr2L:10505035-10505155 2.74e-01 120 chr3L:11540376-11540496 4.82e-02 120 chr3L:18242256-18242376 2.69e-01 120 chrX:20506085-20506205 4.13e-02 120 chr2R:22546786-22546906 2.28e-03 120 chr3R:26539306-26539426 7.21e-03 32_[+1(5.27e-05)]_80 chr2L:1646710-1646830 3.53e-01 120 chr3R:18438344-18438464 7.73e-04 71_[+3(3.94e-05)]_41 chr3R:23947147-23947267 2.26e-02 103_[+4(9.43e-05)]_9 chr2R:14216983-14217103 2.63e-02 120 chr2L:5303692-5303812 2.22e-02 93_[+1(6.74e-05)]_19 chr3R:20263839-20263959 2.47e-02 79_[+1(5.27e-05)]_33 chr2R:12997147-12997267 4.23e-01 120 chr3R:17828798-17828918 2.59e-01 120 chr2R:12007877-12007997 3.53e-02 120 chr2R:19860399-19860519 4.52e-01 120 chr2R:9543691-9543811 1.18e-01 120 chr3R:26900099-26900219 1.05e-01 120 chr2L:6283426-6283546 1.81e-02 49_[+3(8.42e-05)]_63 chr3R:6241403-6241523 8.69e-02 120 chr3R:13448491-13448611 7.46e-02 120 chr2R:20126389-20126509 6.63e-02 54_[+1(6.74e-05)]_58 chr3L:11491933-11492053 5.14e-01 120 chr3R:21271353-21271473 9.33e-02 26_[+2(7.04e-05)]_86 chr3R:24293290-24293410 7.55e-02 120 chrX:18774990-18775110 1.03e-01 120 chr3R:10567002-10567122 5.14e-01 120 chr3L:905150-905270 2.56e-01 120 chr3R:20259570-20259690 3.50e-02 13_[+1(5.27e-05)]_99 chr2L:7566799-7566919 1.14e-02 75_[+2(9.43e-06)]_37 chr3R:15670666-15670786 1.53e-02 120 chr2L:117883-118003 5.14e-02 120 chr2L:161934-162054 3.39e-06 15_[+1(2.19e-05)]_4_[+3(4.84e-05)]_\ 55_[+2(1.61e-05)]_22 chr3L:14328567-14328687 5.97e-01 120 chrX:10582188-10582308 6.46e-02 120 chr3R:30767231-30767351 4.55e-03 76_[+1(5.27e-05)]_36 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************