******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG33557.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:12548521-12548641 1.0000 120 chr2L:9193891-9194011 1.0000 120 chr3L:5627906-5628026 1.0000 120 chr2R:24334534-24334654 1.0000 120 chr3L:17033437-17033557 1.0000 120 chr3R:9215662-9215782 1.0000 120 chr3R:21001242-21001362 1.0000 120 chr3L:3141488-3141608 1.0000 120 chr2R:6119028-6119148 1.0000 120 chr2R:19128307-19128427 1.0000 120 chr3L:5622158-5622278 1.0000 120 chr3R:16082584-16082704 1.0000 120 chr2R:22796852-22796972 1.0000 120 chrX:3967736-3967856 1.0000 120 chr3L:17993442-17993562 1.0000 120 chr2L:12588989-12589109 1.0000 120 chrX:581978-582098 1.0000 120 chr2L:16714025-16714145 1.0000 120 chr3R:11773436-11773556 1.0000 120 chrX:9523673-9523793 1.0000 120 chr3R:24768091-24768211 1.0000 120 chr3R:21835434-21835554 1.0000 120 chr3L:17937452-17937572 1.0000 120 chr3R:8251684-8251804 1.0000 120 chr2R:24324089-24324209 1.0000 120 chr3L:19037185-19037305 1.0000 120 chr2R:11403181-11403301 1.0000 120 chr3L:11276225-11276345 1.0000 120 chr2R:22403226-22403346 1.0000 120 chr2L:9695842-9695962 1.0000 120 chrX:8671777-8671897 1.0000 120 chr3R:20262816-20262936 1.0000 120 chrX:3354499-3354619 1.0000 120 chr2L:8289920-8290040 1.0000 120 chr2R:8584990-8585110 1.0000 120 chr2R:13623520-13623640 1.0000 120 chr2L:6595128-6595248 1.0000 120 chr2L:15324225-15324345 1.0000 120 chr3R:10354106-10354226 1.0000 120 chr2L:14432560-14432680 1.0000 120 chr3L:5983766-5983886 1.0000 120 chr3L:591462-591582 1.0000 120 chr2L:18934738-18934858 1.0000 120 chr3R:10599033-10599153 1.0000 120 chr2L:12641533-12641653 1.0000 120 chr3R:30812079-30812199 1.0000 120 chr2R:11559254-11559374 1.0000 120 chr3R:21825289-21825409 1.0000 120 chr3R:16801197-16801317 1.0000 120 chr2R:17086972-17087092 1.0000 120 chr3R:10514415-10514535 1.0000 120 chr3L:11512806-11512926 1.0000 120 chr2L:2967021-2967141 1.0000 120 chr3R:13817620-13817740 1.0000 120 chr2R:14787871-14787991 1.0000 120 chr3R:10124979-10125099 1.0000 120 chr2R:8659053-8659173 1.0000 120 chr3L:19181394-19181514 1.0000 120 chr2R:8985551-8985671 1.0000 120 chrX:18523341-18523461 1.0000 120 chr3L:19694193-19694313 1.0000 120 chr3L:5017646-5017766 1.0000 120 chr2L:3570664-3570784 1.0000 120 chr3L:11491995-11492115 1.0000 120 chr2L:4365043-4365163 1.0000 120 chrX:4677539-4677659 1.0000 120 chr4:487713-487833 1.0000 120 chr3R:19822249-19822369 1.0000 120 chr3L:15670570-15670690 1.0000 120 chr3R:24270213-24270333 1.0000 120 chr2L:3555816-3555936 1.0000 120 chr3L:3843127-3843247 1.0000 120 chr3R:16630672-16630792 1.0000 120 chr2L:10543177-10543297 1.0000 120 chrX:12674063-12674183 1.0000 120 chr3R:8336312-8336432 1.0000 120 chr2L:16637320-16637440 1.0000 120 chr3R:8155910-8156030 1.0000 120 chr2R:14009802-14009922 1.0000 120 chr2L:7293612-7293732 1.0000 120 chr2L:11038984-11039104 1.0000 120 chrX:17357497-17357617 1.0000 120 chr2L:18556565-18556685 1.0000 120 chr2L:22037059-22037179 1.0000 120 chr3L:18227476-18227596 1.0000 120 chr2L:6252391-6252511 1.0000 120 chr3R:12701385-12701505 1.0000 120 chr2L:3153055-3153175 1.0000 120 chr2R:12008933-12009053 1.0000 120 chrX:3024685-3024805 1.0000 120 chr3L:12062277-12062397 1.0000 120 chr3L:14354800-14354920 1.0000 120 chrX:9082735-9082855 1.0000 120 chr2L:10505019-10505139 1.0000 120 chr3R:13404983-13405103 1.0000 120 chrX:1972328-1972448 1.0000 120 chr3R:23134817-23134937 1.0000 120 chrX:17872418-17872538 1.0000 120 chr3R:14586627-14586747 1.0000 120 chrX:6937586-6937706 1.0000 120 chr3R:27946693-27946813 1.0000 120 chr3L:11355621-11355741 1.0000 120 chr2L:6826447-6826567 1.0000 120 chr3R:31549212-31549332 1.0000 120 chr2L:16626023-16626143 1.0000 120 chr3L:590031-590151 1.0000 120 chr2L:7608208-7608328 1.0000 120 chr3L:14447047-14447167 1.0000 120 chr2L:5881077-5881197 1.0000 120 chr2R:7473823-7473943 1.0000 120 chr3R:30865594-30865714 1.0000 120 chr2L:14273595-14273715 1.0000 120 chr2L:3549034-3549154 1.0000 120 chr3L:20954256-20954376 1.0000 120 chr2L:9189449-9189569 1.0000 120 chr3R:27826298-27826418 1.0000 120 chr3L:11317578-11317698 1.0000 120 chr2R:12635770-12635890 1.0000 120 chr2R:13617957-13618077 1.0000 120 chr2L:14554604-14554724 1.0000 120 chr3L:13232923-13233043 1.0000 120 chr2L:3577651-3577771 1.0000 120 chr2L:18871822-18871942 1.0000 120 chr2R:13560200-13560320 1.0000 120 chr2L:8165919-8166039 1.0000 120 chr3R:29310144-29310264 1.0000 120 chr2L:12457323-12457443 1.0000 120 chr3R:16655345-16655465 1.0000 120 chr3L:15253642-15253762 1.0000 120 chr2L:12474366-12474486 1.0000 120 chrX:457957-458077 1.0000 120 chrX:18238021-18238141 1.0000 120 chr3L:5947202-5947322 1.0000 120 chr2L:3888342-3888462 1.0000 120 chr3R:26964785-26964905 1.0000 120 chr3L:1742694-1742814 1.0000 120 chr2R:19266172-19266292 1.0000 120 chr2R:18436225-18436345 1.0000 120 chr2L:3476632-3476752 1.0000 120 chr2L:20716153-20716273 1.0000 120 chrX:7166494-7166614 1.0000 120 chr3L:20687576-20687696 1.0000 120 chr3L:20792820-20792940 1.0000 120 chr3L:483979-484099 1.0000 120 chrX:2024967-2025087 1.0000 120 chr2L:6291843-6291963 1.0000 120 chr3L:11355822-11355942 1.0000 120 chr2L:19370212-19370332 1.0000 120 chr3L:14971994-14972114 1.0000 120 chr3L:15530769-15530889 1.0000 120 chrX:10010168-10010288 1.0000 120 chr3L:15706313-15706433 1.0000 120 chr3R:6765004-6765124 1.0000 120 chr3L:18297466-18297586 1.0000 120 chr3R:10598311-10598431 1.0000 120 chr3R:9390307-9390427 1.0000 120 chr4:60500-60620 1.0000 120 chr2L:16281780-16281900 1.0000 120 chr3L:12835637-12835757 1.0000 120 chr2R:23180950-23181070 1.0000 120 chr2L:20935501-20935621 1.0000 120 chr2R:9870578-9870698 1.0000 120 chr2L:14673839-14673959 1.0000 120 chr3R:15587575-15587695 1.0000 120 chrX:17743639-17743759 1.0000 120 chr2R:7756433-7756553 1.0000 120 chr3L:3059448-3059568 1.0000 120 chr3L:14961144-14961264 1.0000 120 chr3R:15580740-15580860 1.0000 120 chr3R:16276364-16276484 1.0000 120 chr3L:14625620-14625740 1.0000 120 chr3L:13965043-13965163 1.0000 120 chr2L:13906068-13906188 1.0000 120 chr3L:11003059-11003179 1.0000 120 chrX:18101221-18101341 1.0000 120 chr3L:12079104-12079224 1.0000 120 chr3L:15672943-15673063 1.0000 120 chr3R:9889140-9889260 1.0000 120 chr3R:14386120-14386240 1.0000 120 chr4:1199290-1199410 1.0000 120 chr2L:20327543-20327663 1.0000 120 chr3R:11688326-11688446 1.0000 120 chr2L:3587450-3587570 1.0000 120 chr2R:22542153-22542273 1.0000 120 chr2R:25215269-25215389 1.0000 120 chr3L:1602764-1602884 1.0000 120 chr3R:14716699-14716819 1.0000 120 chr3L:19191975-19192095 1.0000 120 chr2R:18202736-18202856 1.0000 120 chr3R:6665434-6665554 1.0000 120 chr3L:15175027-15175147 1.0000 120 chrX:4609823-4609943 1.0000 120 chrX:12947813-12947933 1.0000 120 chr3R:8180538-8180658 1.0000 120 chr3L:6885815-6885935 1.0000 120 chr3L:7961371-7961491 1.0000 120 chr2R:1264268-1264388 1.0000 120 chr3R:14748785-14748905 1.0000 120 chr2R:10059116-10059236 1.0000 120 chr3L:6797421-6797541 1.0000 120 chr3L:18753982-18754102 1.0000 120 chr2R:10418202-10418322 1.0000 120 chrX:7227468-7227588 1.0000 120 chr3L:14611445-14611565 1.0000 120 chr3L:8058372-8058492 1.0000 120 chr3L:18800223-18800343 1.0000 120 chr3R:10521282-10521402 1.0000 120 chr2R:14486944-14487064 1.0000 120 chr3R:29581611-29581731 1.0000 120 chr2R:13569689-13569809 1.0000 120 chr3R:19935133-19935253 1.0000 120 chr3R:15670655-15670775 1.0000 120 chr3R:22044199-22044319 1.0000 120 chr3L:4272356-4272476 1.0000 120 chr2R:6607619-6607739 1.0000 120 chr3R:16285910-16286030 1.0000 120 chr3L:3978088-3978208 1.0000 120 chr3L:2468581-2468701 1.0000 120 chr2L:19580261-19580381 1.0000 120 chr3L:10391091-10391211 1.0000 120 chr3L:3873187-3873307 1.0000 120 chr3R:23303341-23303461 1.0000 120 chr3R:21834380-21834500 1.0000 120 chr3L:19557350-19557470 1.0000 120 chr3R:15983752-15983872 1.0000 120 chr3L:11273707-11273827 1.0000 120 chr2R:14494772-14494892 1.0000 120 chr3R:10449100-10449220 1.0000 120 chr3R:31704634-31704754 1.0000 120 chr2L:18895129-18895249 1.0000 120 chr3R:6409288-6409408 1.0000 120 chr2L:3841125-3841245 1.0000 120 chr3L:16056338-16056458 1.0000 120 chr2L:8080813-8080933 1.0000 120 chr3L:9042809-9042929 1.0000 120 chr3L:18274278-18274398 1.0000 120 chr2L:10249787-10249907 1.0000 120 chr3R:24293296-24293416 1.0000 120 chr3R:29265237-29265357 1.0000 120 chr2L:10964564-10964684 1.0000 120 chr2R:15351411-15351531 1.0000 120 chr2R:13475028-13475148 1.0000 120 chr2L:18566752-18566872 1.0000 120 chr2R:12007822-12007942 1.0000 120 chrX:6994659-6994779 1.0000 120 chr3L:20612973-20613093 1.0000 120 chr3R:5327963-5328083 1.0000 120 chrX:17510638-17510758 1.0000 120 chr3L:19040490-19040610 1.0000 120 chrX:2462110-2462230 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG33557/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG33557.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.314 C 0.189 G 0.188 T 0.31 Background letter frequencies (from file dataset with add-one prior applied): A 0.314 C 0.189 G 0.188 T 0.31 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TRTTTRCA MEME-1 width = 8 sites = 95 llr = 688 E-value = 4.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRTTTRCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :6:::6:6 pos.-specific C ::::::a2 probability G :4:324:: matrix T a:a78::2 bits 2.4 * 2.2 * 1.9 * 1.7 * * * Relative 1.4 * * * Entropy 1.2 * * * * (10.4 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATTTACA consensus G G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13475028-13475148 113 5.17e-05 GCAGTGCCTG TGTTTACA chr3L:4272356-4272476 85 5.17e-05 GGAATCGAGC TGTTTGCA TTCCTCATTC chr2R:10418202-10418322 21 5.17e-05 TGTGGCTGTA TGTTTGCA GGTGTTGGTG chr2R:10059116-10059236 51 5.17e-05 GAATTCGAAT TGTTTACA GACATTCTAC chr3L:11003059-11003179 1 5.17e-05 . TGTTTACA ATGTTGCCTG chr2R:7756433-7756553 96 5.17e-05 AAGTGTCTGC TGTTTACA TAATTTCTTT chr2L:3570664-3570784 108 5.17e-05 ATTTCTAATT TGTTTACA CTCAA chr3R:10514415-10514535 22 5.17e-05 AAATGGAAGT TGTTTACA TGGAATAAAT chr3R:30812079-30812199 64 5.17e-05 TATCTTGCTT TGTTTGCA GTTCTTGAGT chr2L:14432560-14432680 49 5.17e-05 AAAAGCCCCA TGTTTACA CACCCAAAAC chrX:3967736-3967856 101 5.17e-05 TGATTTGTTT TGTTTACA TTCATACCAA chr3R:5327963-5328083 68 1.69e-04 AATATTTATG TGTGTGCA AGCAGTGAAA chr2L:18895129-18895249 70 1.69e-04 ATCTATAAAA TATTTACA TATTAACAAT chr3R:15670655-15670775 81 1.69e-04 ACAGATACTG TGTGTACA CACATATACA chrX:7227468-7227588 25 1.69e-04 ATCGCAGCTA TATTTACA TATGTCCGTC chr3R:8180538-8180658 12 1.69e-04 TATAGCGAGC TGTGTGCA TTGCACTCGT chr3R:10598311-10598431 89 1.69e-04 ACAATGTCAA TATTTGCA TTGGCCAAGA chrX:18238021-18238141 90 1.69e-04 GGTGTGACAA TATTTACA ATGTCTTGTT chr2L:18871822-18871942 29 1.69e-04 TGGATTTATA TGTGTGCA TCGTTCTTCA chr3R:27946693-27946813 75 1.69e-04 CATATGTACA TATTTACA TATAACCATA chr2L:22037059-22037179 6 1.69e-04 GCAAA TATTTACA TAAGTCGGGC chr2L:10543177-10543297 63 1.69e-04 TCCCTGTCAA TATTTGCA TAGTCGAGTG chr2L:6595128-6595248 82 1.69e-04 tatttatagt tatttaca aaatatatat chrX:3354499-3354619 85 1.69e-04 CCACTGTAAA TATTTACA TGTGCAGCCG chr2R:22403226-22403346 22 1.69e-04 CAAATATTTA TATTTACA TGCACACACC chr3L:11276225-11276345 87 1.69e-04 TTCGAGTAAA TATTTGCA ATTGAGTCTA chr3L:19037185-19037305 42 1.69e-04 CGCATGTGCA TGTGTACA tgctgtttgt chrX:581978-582098 73 1.69e-04 ATCGATACTC TGTGTACA CTATTGATAT chrX:6994659-6994779 37 2.22e-04 GACAGAGGGC TATGTACA TACTTACTGA chr2L:10249787-10249907 58 2.22e-04 CCTGTGTAAA TATGTACA TACACACGAT chr3R:6409288-6409408 99 2.22e-04 GATGCCTGAA TATGTACA TATGTGGGTA chr3L:8058372-8058492 69 2.22e-04 AACAGATACA TATGTACA TAATGAACTC chr3L:19191975-19192095 37 2.22e-04 GCACTGCCTT TATGTACA GTAAAAATTC chr2R:22542153-22542273 72 2.22e-04 GCACAGTATT TATGTACA TATGTATGAA chr3L:3059448-3059568 20 2.22e-04 CCCTTAAAAA TATGTGCA TTATGTATAA chrX:17743639-17743759 74 2.22e-04 ATATATCACA TATGTACA CATATATCGC chr2R:9870578-9870698 84 2.22e-04 ttaaacaACA TATGTACA TATTTTTAAC chr4:60500-60620 85 2.22e-04 TACACATGTG TATGTACA TAAAAGCCTT chr3L:15530769-15530889 43 2.22e-04 TACatgtatg tatgtaca tatatatatg chr3L:1742694-1742814 72 2.22e-04 CGTACTCTTG TATGTACA CAAGTCCATT chr3R:16655345-16655465 36 2.22e-04 CATATGTACA TATGTACA GAAAGTGTTT chrX:17872418-17872538 38 2.22e-04 ACAGAAAAGT TATGTGCA TTGTAACGAC chrX:17357497-17357617 54 2.22e-04 CGTATATAAG TATGTACA TACATGTAAA chr3R:24270213-24270333 72 2.22e-04 TAAATAGAAT TATGTACA TACACACACA chr3L:11491995-11492115 81 2.22e-04 ACATACAATT TATGTACA TACATACGGC chr2L:8289920-8290040 29 2.22e-04 TGTACACATG TATGTACA TAAATATGTA chr2R:12007822-12007942 35 2.53e-04 GCACCGACTT TGTTTGCC TCTCGCAGAC chr2L:19580261-19580381 90 2.53e-04 AAGTCGCATT TGTTTACC TTTTGTATTT chr3R:14748785-14748905 49 2.53e-04 AAGTGCCGAT TGTTTACC TAGAAATTAA chrX:4609823-4609943 2 2.53e-04 T TGTTTACC CAGCTTATTA chr3R:16276364-16276484 53 2.53e-04 TACGCGCATA TGTTTGCC ATTGGGTCTT chr3R:31549212-31549332 61 2.53e-04 AATTTGCATT TGTTTGCC TTACAGATAC chr2R:17086972-17087092 77 2.53e-04 TTACCTCGTA TGTTTACC TTATCGATAC chr3L:5983766-5983886 46 2.53e-04 GTAAATATTG TGTTTACC TCGCTGTCAT chr3R:8251684-8251804 112 2.53e-04 AGAGTGAGAG TGTTTGCC C chr3R:21001242-21001362 82 2.53e-04 AGGTCCTATG TGTTTACC AGGGTAAATA chr3R:6665434-6665554 62 3.55e-04 TAGGTGACAC TGTTGACA ATCAATGTAA chr2L:13906068-13906188 34 3.55e-04 TATTTAATAC TGTGTACC AAAAGCGACT chr2R:23180950-23181070 49 3.55e-04 CATTTGCCTT TGTTGACA TTTGTAAAAT chr2R:19266172-19266292 30 3.55e-04 TTGGCGTTTT TGTTGACA TTACCGAAAA chr2L:3577651-3577771 50 3.55e-04 TAATTGCCCT TGTTGGCA CTCGAGCGAT chr3L:11355621-11355741 41 3.55e-04 AGAGCGTCAA TATTTGCC CCAAAATAAT chr3R:23134817-23134937 89 3.55e-04 CTAAATAATG TGTGTGCC TTGTAAGTGG chr2L:6252391-6252511 29 3.55e-04 CACAGCTCCT TATTTACC TTATGTAAAT chrX:18523341-18523461 21 3.55e-04 TTTATTATTA TATTTACC AAATATTTTT chr2L:15324225-15324345 90 3.55e-04 GACATGAGCA TATTTACC ACAAAATGGG chr3L:16056338-16056458 67 4.06e-04 TCAACATCAA TGTTTGCT TGATAAATAA chr3R:10521282-10521402 113 4.06e-04 ACAACTTCTG TGTTTGCT chrX:7166494-7166614 81 4.06e-04 CTCAAAAGTT TGTTTGCT GGACGTGCGC chr3L:13232923-13233043 84 4.06e-04 ACTAATGGAC TGTTTACT TATTTATGGG chr3L:20954256-20954376 92 4.06e-04 CCCGAAGATT TGTTTGCT TTACTTTTCT chr3L:14354800-14354920 51 4.06e-04 CAATTCCCAT TGTTTGCT GGGTAAACTT chr2L:20935501-20935621 28 5.09e-04 GGACGGCGTG TATTGGCA TAAAGCGGAG chr3L:15706313-15706433 47 5.09e-04 GCCTTGTCAT TATTGACA TTACAAATGT chr3R:29310144-29310264 19 5.09e-04 GATCGAAAAA TATTGGCA TGAAACATCC chr3L:11317578-11317698 18 5.09e-04 AGCATCAAAA TATTGACA AGCTGATACA chr2L:10505019-10505139 79 5.09e-04 GCCACACAAA TATTGACA CGCGATTGGG chr2R:14009802-14009922 5 5.09e-04 CTTG TATTGACA TTACTAATGC chr2R:14787871-14787991 51 5.09e-04 ATAATGCAAA TATTGACA ATGTCCACAA chr3R:21825289-21825409 65 5.09e-04 TGTGATCAAA TATTGACA GTATGTATTT chr2R:24324089-24324209 95 5.09e-04 gtttCGGCCG TATTGACA ACGTTCGAAG chrX:2462110-2462230 59 6.26e-04 TTGTTTCGCT TATTTACT CAAacggtcg chr3L:19040490-19040610 88 6.26e-04 TTTCCGTAAA TATTTGCT TAGAACGTGT chr3R:15983752-15983872 2 6.26e-04 A TATTTACT TCTGTCCCTC chr3L:11355822-11355942 16 6.26e-04 AAATTTTCAG TATTTGCT TAAGCAACTC chr3L:5947202-5947322 2 6.26e-04 T TATTTGCT TTATGGCTGT chr2L:8165919-8166039 87 6.26e-04 CGGCTTGGCC TATTTGCT TATCTTATTC chr3L:18227476-18227596 4 6.26e-04 CTT TATTTGCT GTACACATCA chr2L:9695842-9695962 75 6.26e-04 ATATTGTGGT TATTTACT AAAAATCTCA chr2L:16714025-16714145 91 6.26e-04 ATTTCCTTTT TGTGTGCT GGCTTTTCCA chr3L:19694193-19694313 55 6.57e-04 ATATCCCATT TATGGGCA CAGGTCCACA chr3R:12701385-12701505 63 7.28e-04 TACATTCCAA TATGTGCT GCCTCCGAGG chr2R:14494772-14494892 63 8.02e-04 GCGGCGGGGT TGTTGACT GGGTAAACAT chr3R:22044199-22044319 50 8.02e-04 ATGAATTCTT TGTTGACT CGGCCATTCG chr3R:16285910-16286030 102 8.21e-04 AGTGAACACC TATGGGCC TTATGGGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13475028-13475148 5.2e-05 112_[+1] chr3L:4272356-4272476 5.2e-05 84_[+1]_28 chr2R:10418202-10418322 5.2e-05 20_[+1]_92 chr2R:10059116-10059236 5.2e-05 50_[+1]_62 chr3L:11003059-11003179 5.2e-05 [+1]_112 chr2R:7756433-7756553 5.2e-05 95_[+1]_17 chr2L:3570664-3570784 5.2e-05 107_[+1]_5 chr3R:10514415-10514535 5.2e-05 21_[+1]_91 chr3R:30812079-30812199 5.2e-05 63_[+1]_49 chr2L:14432560-14432680 5.2e-05 48_[+1]_64 chrX:3967736-3967856 5.2e-05 100_[+1]_12 chr3R:5327963-5328083 0.00017 67_[+1]_45 chr2L:18895129-18895249 0.00017 69_[+1]_43 chr3R:15670655-15670775 0.00017 80_[+1]_32 chrX:7227468-7227588 0.00017 24_[+1]_88 chr3R:8180538-8180658 0.00017 11_[+1]_101 chr3R:10598311-10598431 0.00017 88_[+1]_24 chrX:18238021-18238141 0.00017 89_[+1]_23 chr2L:18871822-18871942 0.00017 28_[+1]_84 chr3R:27946693-27946813 0.00017 74_[+1]_38 chr2L:22037059-22037179 0.00017 5_[+1]_107 chr2L:10543177-10543297 0.00017 62_[+1]_50 chr2L:6595128-6595248 0.00017 81_[+1]_31 chrX:3354499-3354619 0.00017 84_[+1]_28 chr2R:22403226-22403346 0.00017 21_[+1]_91 chr3L:11276225-11276345 0.00017 86_[+1]_26 chr3L:19037185-19037305 0.00017 41_[+1]_71 chrX:581978-582098 0.00017 72_[+1]_40 chrX:6994659-6994779 0.00022 36_[+1]_76 chr2L:10249787-10249907 0.00022 57_[+1]_55 chr3R:6409288-6409408 0.00022 98_[+1]_14 chr3L:8058372-8058492 0.00022 68_[+1]_44 chr3L:19191975-19192095 0.00022 36_[+1]_76 chr2R:22542153-22542273 0.00022 71_[+1]_41 chr3L:3059448-3059568 0.00022 19_[+1]_93 chrX:17743639-17743759 0.00022 73_[+1]_39 chr2R:9870578-9870698 0.00022 83_[+1]_29 chr4:60500-60620 0.00022 84_[+1]_28 chr3L:15530769-15530889 0.00022 42_[+1]_70 chr3L:1742694-1742814 0.00022 71_[+1]_41 chr3R:16655345-16655465 0.00022 35_[+1]_77 chrX:17872418-17872538 0.00022 37_[+1]_75 chrX:17357497-17357617 0.00022 53_[+1]_59 chr3R:24270213-24270333 0.00022 71_[+1]_41 chr3L:11491995-11492115 0.00022 80_[+1]_32 chr2L:8289920-8290040 0.00022 28_[+1]_84 chr2R:12007822-12007942 0.00025 34_[+1]_78 chr2L:19580261-19580381 0.00025 89_[+1]_23 chr3R:14748785-14748905 0.00025 48_[+1]_64 chrX:4609823-4609943 0.00025 1_[+1]_111 chr3R:16276364-16276484 0.00025 52_[+1]_60 chr3R:31549212-31549332 0.00025 60_[+1]_52 chr2R:17086972-17087092 0.00025 76_[+1]_36 chr3L:5983766-5983886 0.00025 45_[+1]_67 chr3R:8251684-8251804 0.00025 111_[+1]_1 chr3R:21001242-21001362 0.00025 81_[+1]_31 chr3R:6665434-6665554 0.00036 61_[+1]_51 chr2L:13906068-13906188 0.00036 33_[+1]_79 chr2R:23180950-23181070 0.00036 48_[+1]_64 chr2R:19266172-19266292 0.00036 29_[+1]_83 chr2L:3577651-3577771 0.00036 49_[+1]_63 chr3L:11355621-11355741 0.00036 40_[+1]_72 chr3R:23134817-23134937 0.00036 88_[+1]_24 chr2L:6252391-6252511 0.00036 28_[+1]_84 chrX:18523341-18523461 0.00036 20_[+1]_92 chr2L:15324225-15324345 0.00036 89_[+1]_23 chr3L:16056338-16056458 0.00041 66_[+1]_46 chr3R:10521282-10521402 0.00041 112_[+1] chrX:7166494-7166614 0.00041 80_[+1]_32 chr3L:13232923-13233043 0.00041 83_[+1]_29 chr3L:20954256-20954376 0.00041 91_[+1]_21 chr3L:14354800-14354920 0.00041 50_[+1]_62 chr2L:20935501-20935621 0.00051 27_[+1]_85 chr3L:15706313-15706433 0.00051 46_[+1]_66 chr3R:29310144-29310264 0.00051 18_[+1]_94 chr3L:11317578-11317698 0.00051 17_[+1]_95 chr2L:10505019-10505139 0.00051 78_[+1]_34 chr2R:14009802-14009922 0.00051 4_[+1]_108 chr2R:14787871-14787991 0.00051 50_[+1]_62 chr3R:21825289-21825409 0.00051 64_[+1]_48 chr2R:24324089-24324209 0.00051 94_[+1]_18 chrX:2462110-2462230 0.00063 58_[+1]_54 chr3L:19040490-19040610 0.00063 87_[+1]_25 chr3R:15983752-15983872 0.00063 1_[+1]_111 chr3L:11355822-11355942 0.00063 15_[+1]_97 chr3L:5947202-5947322 0.00063 1_[+1]_111 chr2L:8165919-8166039 0.00063 86_[+1]_26 chr3L:18227476-18227596 0.00063 3_[+1]_109 chr2L:9695842-9695962 0.00063 74_[+1]_38 chr2L:16714025-16714145 0.00063 90_[+1]_22 chr3L:19694193-19694313 0.00066 54_[+1]_58 chr3R:12701385-12701505 0.00073 62_[+1]_50 chr2R:14494772-14494892 0.0008 62_[+1]_50 chr3R:22044199-22044319 0.0008 49_[+1]_63 chr3R:16285910-16286030 0.00082 101_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRTTTRCA width=8 seqs=95 chr2R:13475028-13475148 ( 113) TGTTTACA 1 chr3L:4272356-4272476 ( 85) TGTTTGCA 1 chr2R:10418202-10418322 ( 21) TGTTTGCA 1 chr2R:10059116-10059236 ( 51) TGTTTACA 1 chr3L:11003059-11003179 ( 1) TGTTTACA 1 chr2R:7756433-7756553 ( 96) TGTTTACA 1 chr2L:3570664-3570784 ( 108) TGTTTACA 1 chr3R:10514415-10514535 ( 22) TGTTTACA 1 chr3R:30812079-30812199 ( 64) TGTTTGCA 1 chr2L:14432560-14432680 ( 49) TGTTTACA 1 chrX:3967736-3967856 ( 101) TGTTTACA 1 chr3R:5327963-5328083 ( 68) TGTGTGCA 1 chr2L:18895129-18895249 ( 70) TATTTACA 1 chr3R:15670655-15670775 ( 81) TGTGTACA 1 chrX:7227468-7227588 ( 25) TATTTACA 1 chr3R:8180538-8180658 ( 12) TGTGTGCA 1 chr3R:10598311-10598431 ( 89) TATTTGCA 1 chrX:18238021-18238141 ( 90) TATTTACA 1 chr2L:18871822-18871942 ( 29) TGTGTGCA 1 chr3R:27946693-27946813 ( 75) TATTTACA 1 chr2L:22037059-22037179 ( 6) TATTTACA 1 chr2L:10543177-10543297 ( 63) TATTTGCA 1 chr2L:6595128-6595248 ( 82) TATTTACA 1 chrX:3354499-3354619 ( 85) TATTTACA 1 chr2R:22403226-22403346 ( 22) TATTTACA 1 chr3L:11276225-11276345 ( 87) TATTTGCA 1 chr3L:19037185-19037305 ( 42) TGTGTACA 1 chrX:581978-582098 ( 73) TGTGTACA 1 chrX:6994659-6994779 ( 37) TATGTACA 1 chr2L:10249787-10249907 ( 58) TATGTACA 1 chr3R:6409288-6409408 ( 99) TATGTACA 1 chr3L:8058372-8058492 ( 69) TATGTACA 1 chr3L:19191975-19192095 ( 37) TATGTACA 1 chr2R:22542153-22542273 ( 72) TATGTACA 1 chr3L:3059448-3059568 ( 20) TATGTGCA 1 chrX:17743639-17743759 ( 74) TATGTACA 1 chr2R:9870578-9870698 ( 84) TATGTACA 1 chr4:60500-60620 ( 85) TATGTACA 1 chr3L:15530769-15530889 ( 43) TATGTACA 1 chr3L:1742694-1742814 ( 72) TATGTACA 1 chr3R:16655345-16655465 ( 36) TATGTACA 1 chrX:17872418-17872538 ( 38) TATGTGCA 1 chrX:17357497-17357617 ( 54) TATGTACA 1 chr3R:24270213-24270333 ( 72) TATGTACA 1 chr3L:11491995-11492115 ( 81) TATGTACA 1 chr2L:8289920-8290040 ( 29) TATGTACA 1 chr2R:12007822-12007942 ( 35) TGTTTGCC 1 chr2L:19580261-19580381 ( 90) TGTTTACC 1 chr3R:14748785-14748905 ( 49) TGTTTACC 1 chrX:4609823-4609943 ( 2) TGTTTACC 1 chr3R:16276364-16276484 ( 53) TGTTTGCC 1 chr3R:31549212-31549332 ( 61) TGTTTGCC 1 chr2R:17086972-17087092 ( 77) TGTTTACC 1 chr3L:5983766-5983886 ( 46) TGTTTACC 1 chr3R:8251684-8251804 ( 112) TGTTTGCC 1 chr3R:21001242-21001362 ( 82) TGTTTACC 1 chr3R:6665434-6665554 ( 62) TGTTGACA 1 chr2L:13906068-13906188 ( 34) TGTGTACC 1 chr2R:23180950-23181070 ( 49) TGTTGACA 1 chr2R:19266172-19266292 ( 30) TGTTGACA 1 chr2L:3577651-3577771 ( 50) TGTTGGCA 1 chr3L:11355621-11355741 ( 41) TATTTGCC 1 chr3R:23134817-23134937 ( 89) TGTGTGCC 1 chr2L:6252391-6252511 ( 29) TATTTACC 1 chrX:18523341-18523461 ( 21) TATTTACC 1 chr2L:15324225-15324345 ( 90) TATTTACC 1 chr3L:16056338-16056458 ( 67) TGTTTGCT 1 chr3R:10521282-10521402 ( 113) TGTTTGCT 1 chrX:7166494-7166614 ( 81) TGTTTGCT 1 chr3L:13232923-13233043 ( 84) TGTTTACT 1 chr3L:20954256-20954376 ( 92) TGTTTGCT 1 chr3L:14354800-14354920 ( 51) TGTTTGCT 1 chr2L:20935501-20935621 ( 28) TATTGGCA 1 chr3L:15706313-15706433 ( 47) TATTGACA 1 chr3R:29310144-29310264 ( 19) TATTGGCA 1 chr3L:11317578-11317698 ( 18) TATTGACA 1 chr2L:10505019-10505139 ( 79) TATTGACA 1 chr2R:14009802-14009922 ( 5) TATTGACA 1 chr2R:14787871-14787991 ( 51) TATTGACA 1 chr3R:21825289-21825409 ( 65) TATTGACA 1 chr2R:24324089-24324209 ( 95) TATTGACA 1 chrX:2462110-2462230 ( 59) TATTTACT 1 chr3L:19040490-19040610 ( 88) TATTTGCT 1 chr3R:15983752-15983872 ( 2) TATTTACT 1 chr3L:11355822-11355942 ( 16) TATTTGCT 1 chr3L:5947202-5947322 ( 2) TATTTGCT 1 chr2L:8165919-8166039 ( 87) TATTTGCT 1 chr3L:18227476-18227596 ( 4) TATTTGCT 1 chr2L:9695842-9695962 ( 75) TATTTACT 1 chr2L:16714025-16714145 ( 91) TGTGTGCT 1 chr3L:19694193-19694313 ( 55) TATGGGCA 1 chr3R:12701385-12701505 ( 63) TATGTGCT 1 chr2R:14494772-14494892 ( 63) TGTTGACT 1 chr3R:22044199-22044319 ( 50) TGTTGACT 1 chr3R:16285910-16286030 ( 102) TATGGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.30471 E= 4.6e-011 -1321 -1321 -1321 169 83 -1321 124 -1321 -1321 -1321 -1321 169 -1321 -1321 75 114 -1321 -1321 -7 141 103 -1321 93 -1321 -1321 240 -1321 -1321 101 -8 -1321 -71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 4.6e-011 0.000000 0.000000 0.000000 1.000000 0.557895 0.000000 0.442105 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.315789 0.684211 0.000000 0.000000 0.178947 0.821053 0.642105 0.000000 0.357895 0.000000 0.000000 1.000000 0.000000 0.000000 0.631579 0.178947 0.000000 0.189474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTRCA MEME-1 regular expression -------------------------------------------------------------------------------- T[AG]T[TG]T[AG]CA -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CGSCGGCG MEME-2 width = 8 sites = 7 llr = 83 E-value = 1.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGSCGGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:691:a: probability G :a419a:a matrix T :::::::: bits 2.4 ** *** 2.2 ** *** 1.9 ** ***** 1.7 ** ***** Relative 1.4 ******** Entropy 1.2 ******** (17.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGGCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:22037059-22037179 27 1.59e-06 GTCGGGCAAA CGCCGGCG AAGGCTTTTT chr2R:13623520-13623640 76 1.59e-06 TTTCCGGTTC CGCCGGCG CTACTTCCGC chr2L:19370212-19370332 47 3.18e-06 GTGAAAAGGG CGGCGGCG GGGTGACGAC chr2L:20716153-20716273 74 3.18e-06 CTCGTCTTTG CGGCGGCG ACGTCTTCTG chr3L:11491995-11492115 95 3.18e-06 TACATACATA CGGCGGCG GTTACAAAAA chr3L:20792820-20792940 112 6.37e-06 GCTTCTCGTC CGCGGGCG G chrX:4677539-4677659 97 6.37e-06 TCGCAGGTAC CGCCCGCG GCAGGTACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:22037059-22037179 1.6e-06 26_[+2]_86 chr2R:13623520-13623640 1.6e-06 75_[+2]_37 chr2L:19370212-19370332 3.2e-06 46_[+2]_66 chr2L:20716153-20716273 3.2e-06 73_[+2]_39 chr3L:11491995-11492115 3.2e-06 94_[+2]_18 chr3L:20792820-20792940 6.4e-06 111_[+2]_1 chrX:4677539-4677659 6.4e-06 96_[+2]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGSCGGCG width=8 seqs=7 chr2L:22037059-22037179 ( 27) CGCCGGCG 1 chr2R:13623520-13623640 ( 76) CGCCGGCG 1 chr2L:19370212-19370332 ( 47) CGGCGGCG 1 chr2L:20716153-20716273 ( 74) CGGCGGCG 1 chr3L:11491995-11492115 ( 95) CGGCGGCG 1 chr3L:20792820-20792940 ( 112) CGCGGGCG 1 chrX:4677539-4677659 ( 97) CGCCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 1.6e+001 -945 240 -945 -945 -945 -945 241 -945 -945 160 119 -945 -945 218 -39 -945 -945 -40 219 -945 -945 -945 241 -945 -945 240 -945 -945 -945 -945 241 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.6e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGCG MEME-2 regular expression -------------------------------------------------------------------------------- CG[CG]CGGCG -------------------------------------------------------------------------------- Time 13.71 secs. ******************************************************************************** ******************************************************************************** MOTIF DGYAAACA MEME-3 width = 8 sites = 64 llr = 479 E-value = 6.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGYAAACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4:189a:a pos.-specific C ::321:7: probability G 4a:::::: matrix T 2:6:::3: bits 2.4 * 2.2 * 1.9 * 1.7 * * * Relative 1.4 * **** Entropy 1.2 * ***** (10.8 bits) 1.0 * ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTAAACA consensus A C T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14494772-14494892 72 3.24e-05 TTGTTGACTG GGTAAACA TCGAAGAAAG chr2L:20327543-20327663 78 3.24e-05 CTGACCGTTA GGCAAACA ATGAACAATT chr3R:10598311-10598431 33 3.24e-05 TTTTGCTGTA GGCAAACA CATACGGTAG chr2L:3888342-3888462 29 3.24e-05 TACCCCAAAA GGTAAACA AAGAAAATTG chr2L:14554604-14554724 30 3.24e-05 CCGACGAATA GGTAAACA TGCCGGCAAT chrX:17872418-17872538 66 3.24e-05 AAGAGAACCT GGTAAACA TGATCCAAAC chr3R:23134817-23134937 34 3.24e-05 GGGTGCGTAA GGTAAACA TTTACGTATA chr2L:18556565-18556685 5 3.24e-05 ATAA GGCAAACA AATGAATATA chr2R:11403181-11403301 77 3.24e-05 AAAAGTAGAA GGCAAACA AACTGGATGT chr3L:17993442-17993562 25 3.24e-05 CGGCACGCCA GGTAAACA AGAGAGAAAA chr3R:24293296-24293416 50 8.65e-05 ATATTTTTTC AGTAAACA CAATTGATTG chrX:4609823-4609943 19 8.65e-05 CCAGCTTATT AGCAAACA TTCTTAtcag chr3L:12835637-12835757 77 8.65e-05 TATATCGCCA AGTAAACA AGTAAATAAA chr2L:6291843-6291963 36 8.65e-05 CTTTATCGAA AGTAAACA AACAGCGTGA chr2L:18871822-18871942 10 8.65e-05 TGCATATGC AGCAAACA TTGGATTTAT chr2L:9189449-9189569 106 8.65e-05 TCGACAATAA AGTAAACA AACTGAA chr3L:14447047-14447167 99 8.65e-05 TCAAGTGACG AGCAAACA ACTCAACTTC chr2L:16626023-16626143 11 8.65e-05 ATACAAGAAA AGCAAACA TCTTCGATAT chr2L:6826447-6826567 109 8.65e-05 CCGACCGATA AGTAAACA AGAG chr2L:10543177-10543297 9 8.65e-05 AAAAGTAA AGCAAACA ACAATAAATT chr3R:19822249-19822369 87 8.65e-05 GTTTGACTTG AGTAAACA ACAATTTCTA chr2L:3570664-3570784 36 8.65e-05 TCAGTGGTTA AGTAAACA CAGCTCACAC chr2R:25215269-25215389 26 1.06e-04 GCACATCAAT GGCCAACA GACGTGATGC chr3L:14354800-14354920 86 1.06e-04 CTGTTTGTTT GGTCAACA TTTTATATAA chr3R:6665434-6665554 75 1.59e-04 TGACAATCAA TGTAAACA CCACAGTCGC chr3R:14386120-14386240 103 1.59e-04 TTGCTGAAAA TGCAAACA AACTTGTAAC chr2R:23180950-23181070 66 1.59e-04 ATTTGTAAAA TGCAAACA GAACACGCAA chr3R:6765004-6765124 63 1.59e-04 CGTCGGCTTG TGCAAACA CACATTAATA chr3L:483979-484099 66 1.59e-04 AGTCAATAAG TGCAAACA AGGCGAGGCG chr2R:7473823-7473943 77 1.59e-04 GCACGGCAAA TGTAAACA ACACTGACAC chr2R:12008933-12009053 61 1.59e-04 CCACAATCGC TGTAAACA ATTGCCGGAA chr3R:13817620-13817740 20 1.59e-04 TTGTTTTCAG TGTAAACA ACAGCACCCC chr3L:19040490-19040610 11 2.45e-04 AAAGAAGAAG AGCCAACA CGGTTCTTCC chr2R:14486944-14487064 60 2.45e-04 TTACCCACAA GGCAAATA TCAACAGAGC chr2L:20935501-20935621 52 2.45e-04 GGAGTAATAA GGTAAATA TATGCTCAGC chr3L:1742694-1742814 28 2.45e-04 GCGAGTACAA AGTCAACA ATGGCCAAAC chr2L:3549034-3549154 41 2.45e-04 TCGCACAATT GGTAAATA CCGTGGGTGA chr3R:31549212-31549332 36 2.45e-04 AATTGTTGTA GGCAAATA TTTAACTAAT chrX:6937586-6937706 100 2.45e-04 GGCTTAACCC AGTCAACA AATTGTTGGG chr2R:22403226-22403346 42 2.45e-04 CACACACCAG AGCCAACA CACTGGAATG chr3R:21835434-21835554 11 2.45e-04 CTAGCAACAC AGTCAACA CAGAGAGTAA chr3R:21001242-21001362 92 2.45e-04 TGTTTACCAG GGTAAATA TTGTTTAAAG chrX:12947813-12947933 5 3.34e-04 AATC AGCAAATA GACCGGAAGT chrX:3024685-3024805 95 3.34e-04 TATGGCTTGC AGCAAATA TGCGCCCCTA chr3R:12701385-12701505 31 3.34e-04 GAATTGGAAT AGTAAATA TACATATGTA chr2L:11038984-11039104 89 3.34e-04 CCGTAAGAAG AGTAAATA AACCGAatat chr3R:30812079-30812199 79 3.34e-04 GCAGTTCTTG AGTAAATA CTAAACCACC chrX:3967736-3967856 39 3.34e-04 ATAAATAGCA AGCAAATA GTCAATATTT chr3R:15670655-15670775 32 3.66e-04 TAATCTCCAA TGTCAACA GCGGCTTACA chr3L:13965043-13965163 50 3.66e-04 TTGCTAACTT TGCCAACA GCTGCAATAA chr2R:6607619-6607739 80 4.06e-04 TGTGAGTGAA GGTACACA CAACTAAGTA chr3L:8058372-8058492 55 4.06e-04 GCTTATCTTA GGAAAACA GATACATATG chr3L:14611445-14611565 104 4.06e-04 TCATATTCTT GGAAAACA CATTTTTCT chr3R:9889140-9889260 73 4.06e-04 GAACGGAGGA GGAAAACA TTTGCATAGA chr4:60500-60620 73 4.06e-04 TTTCCAGTAT GGTACACA TGTGTATGTA chrX:4677539-4677659 108 4.06e-04 GCCCGCGGCA GGTACACA GAATG chrX:7166494-7166614 11 4.38e-04 TTATATAATT GGTCAATA TGGTTTGATA chr3L:13232923-13233043 113 4.38e-04 CCTGAATGTT GGTCAATA chr3R:27946693-27946813 34 4.38e-04 AACAAGAATC GGTCAATA ATAGGTATTG chr3L:6885815-6885935 21 5.26e-04 TTCAGATTTA TGTAAATA CATTTGCTTT chr3L:14625620-14625740 13 5.26e-04 GCCCTCGTTT TGTAAATA GGGAGTGTCT chr3L:5983766-5983886 35 5.26e-04 CTTCTGGCTG TGTAAATA TTGTGTTTAC chrX:10010168-10010288 110 5.92e-04 ACATATAAAA AGAAAACA AAA chr2L:5881077-5881197 74 5.92e-04 CCGTGTGAAA AGTACACA CCAGCCCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14494772-14494892 3.2e-05 71_[+3]_41 chr2L:20327543-20327663 3.2e-05 77_[+3]_35 chr3R:10598311-10598431 3.2e-05 32_[+3]_80 chr2L:3888342-3888462 3.2e-05 28_[+3]_84 chr2L:14554604-14554724 3.2e-05 29_[+3]_83 chrX:17872418-17872538 3.2e-05 65_[+3]_47 chr3R:23134817-23134937 3.2e-05 33_[+3]_79 chr2L:18556565-18556685 3.2e-05 4_[+3]_108 chr2R:11403181-11403301 3.2e-05 76_[+3]_36 chr3L:17993442-17993562 3.2e-05 24_[+3]_88 chr3R:24293296-24293416 8.7e-05 49_[+3]_63 chrX:4609823-4609943 8.7e-05 18_[+3]_94 chr3L:12835637-12835757 8.7e-05 76_[+3]_36 chr2L:6291843-6291963 8.7e-05 35_[+3]_77 chr2L:18871822-18871942 8.7e-05 9_[+3]_103 chr2L:9189449-9189569 8.7e-05 105_[+3]_7 chr3L:14447047-14447167 8.7e-05 98_[+3]_14 chr2L:16626023-16626143 8.7e-05 10_[+3]_102 chr2L:6826447-6826567 8.7e-05 108_[+3]_4 chr2L:10543177-10543297 8.7e-05 8_[+3]_104 chr3R:19822249-19822369 8.7e-05 86_[+3]_26 chr2L:3570664-3570784 8.7e-05 35_[+3]_77 chr2R:25215269-25215389 0.00011 25_[+3]_87 chr3L:14354800-14354920 0.00011 85_[+3]_27 chr3R:6665434-6665554 0.00016 74_[+3]_38 chr3R:14386120-14386240 0.00016 102_[+3]_10 chr2R:23180950-23181070 0.00016 65_[+3]_47 chr3R:6765004-6765124 0.00016 62_[+3]_50 chr3L:483979-484099 0.00016 65_[+3]_47 chr2R:7473823-7473943 0.00016 76_[+3]_36 chr2R:12008933-12009053 0.00016 60_[+3]_52 chr3R:13817620-13817740 0.00016 19_[+3]_93 chr3L:19040490-19040610 0.00025 10_[+3]_102 chr2R:14486944-14487064 0.00025 59_[+3]_53 chr2L:20935501-20935621 0.00025 51_[+3]_61 chr3L:1742694-1742814 0.00025 27_[+3]_85 chr2L:3549034-3549154 0.00025 40_[+3]_72 chr3R:31549212-31549332 0.00025 35_[+3]_77 chrX:6937586-6937706 0.00025 99_[+3]_13 chr2R:22403226-22403346 0.00025 41_[+3]_71 chr3R:21835434-21835554 0.00025 10_[+3]_102 chr3R:21001242-21001362 0.00025 91_[+3]_21 chrX:12947813-12947933 0.00033 4_[+3]_108 chrX:3024685-3024805 0.00033 94_[+3]_18 chr3R:12701385-12701505 0.00033 30_[+3]_82 chr2L:11038984-11039104 0.00033 88_[+3]_24 chr3R:30812079-30812199 0.00033 78_[+3]_34 chrX:3967736-3967856 0.00033 38_[+3]_74 chr3R:15670655-15670775 0.00037 31_[+3]_81 chr3L:13965043-13965163 0.00037 49_[+3]_63 chr2R:6607619-6607739 0.00041 79_[+3]_33 chr3L:8058372-8058492 0.00041 54_[+3]_58 chr3L:14611445-14611565 0.00041 103_[+3]_9 chr3R:9889140-9889260 0.00041 72_[+3]_40 chr4:60500-60620 0.00041 72_[+3]_40 chrX:4677539-4677659 0.00041 107_[+3]_5 chrX:7166494-7166614 0.00044 10_[+3]_102 chr3L:13232923-13233043 0.00044 112_[+3] chr3R:27946693-27946813 0.00044 33_[+3]_79 chr3L:6885815-6885935 0.00053 20_[+3]_92 chr3L:14625620-14625740 0.00053 12_[+3]_100 chr3L:5983766-5983886 0.00053 34_[+3]_78 chrX:10010168-10010288 0.00059 109_[+3]_3 chr2L:5881077-5881197 0.00059 73_[+3]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGYAAACA width=8 seqs=64 chr2R:14494772-14494892 ( 72) GGTAAACA 1 chr2L:20327543-20327663 ( 78) GGCAAACA 1 chr3R:10598311-10598431 ( 33) GGCAAACA 1 chr2L:3888342-3888462 ( 29) GGTAAACA 1 chr2L:14554604-14554724 ( 30) GGTAAACA 1 chrX:17872418-17872538 ( 66) GGTAAACA 1 chr3R:23134817-23134937 ( 34) GGTAAACA 1 chr2L:18556565-18556685 ( 5) GGCAAACA 1 chr2R:11403181-11403301 ( 77) GGCAAACA 1 chr3L:17993442-17993562 ( 25) GGTAAACA 1 chr3R:24293296-24293416 ( 50) AGTAAACA 1 chrX:4609823-4609943 ( 19) AGCAAACA 1 chr3L:12835637-12835757 ( 77) AGTAAACA 1 chr2L:6291843-6291963 ( 36) AGTAAACA 1 chr2L:18871822-18871942 ( 10) AGCAAACA 1 chr2L:9189449-9189569 ( 106) AGTAAACA 1 chr3L:14447047-14447167 ( 99) AGCAAACA 1 chr2L:16626023-16626143 ( 11) AGCAAACA 1 chr2L:6826447-6826567 ( 109) AGTAAACA 1 chr2L:10543177-10543297 ( 9) AGCAAACA 1 chr3R:19822249-19822369 ( 87) AGTAAACA 1 chr2L:3570664-3570784 ( 36) AGTAAACA 1 chr2R:25215269-25215389 ( 26) GGCCAACA 1 chr3L:14354800-14354920 ( 86) GGTCAACA 1 chr3R:6665434-6665554 ( 75) TGTAAACA 1 chr3R:14386120-14386240 ( 103) TGCAAACA 1 chr2R:23180950-23181070 ( 66) TGCAAACA 1 chr3R:6765004-6765124 ( 63) TGCAAACA 1 chr3L:483979-484099 ( 66) TGCAAACA 1 chr2R:7473823-7473943 ( 77) TGTAAACA 1 chr2R:12008933-12009053 ( 61) TGTAAACA 1 chr3R:13817620-13817740 ( 20) TGTAAACA 1 chr3L:19040490-19040610 ( 11) AGCCAACA 1 chr2R:14486944-14487064 ( 60) GGCAAATA 1 chr2L:20935501-20935621 ( 52) GGTAAATA 1 chr3L:1742694-1742814 ( 28) AGTCAACA 1 chr2L:3549034-3549154 ( 41) GGTAAATA 1 chr3R:31549212-31549332 ( 36) GGCAAATA 1 chrX:6937586-6937706 ( 100) AGTCAACA 1 chr2R:22403226-22403346 ( 42) AGCCAACA 1 chr3R:21835434-21835554 ( 11) AGTCAACA 1 chr3R:21001242-21001362 ( 92) GGTAAATA 1 chrX:12947813-12947933 ( 5) AGCAAATA 1 chrX:3024685-3024805 ( 95) AGCAAATA 1 chr3R:12701385-12701505 ( 31) AGTAAATA 1 chr2L:11038984-11039104 ( 89) AGTAAATA 1 chr3R:30812079-30812199 ( 79) AGTAAATA 1 chrX:3967736-3967856 ( 39) AGCAAATA 1 chr3R:15670655-15670775 ( 32) TGTCAACA 1 chr3L:13965043-13965163 ( 50) TGCCAACA 1 chr2R:6607619-6607739 ( 80) GGTACACA 1 chr3L:8058372-8058492 ( 55) GGAAAACA 1 chr3L:14611445-14611565 ( 104) GGAAAACA 1 chr3R:9889140-9889260 ( 73) GGAAAACA 1 chr4:60500-60620 ( 73) GGTACACA 1 chrX:4677539-4677659 ( 108) GGTACACA 1 chrX:7166494-7166614 ( 11) GGTCAATA 1 chr3L:13232923-13233043 ( 113) GGTCAATA 1 chr3R:27946693-27946813 ( 34) GGTCAATA 1 chr3L:6885815-6885935 ( 21) TGTAAATA 1 chr3L:14625620-14625740 ( 13) TGTAAATA 1 chr3L:5983766-5983886 ( 35) TGTAAATA 1 chrX:10010168-10010288 ( 110) AGAAAACA 1 chr2L:5881077-5881197 ( 74) AGTACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.52097 E= 6.3e+003 32 -1264 111 -61 -1264 -1264 241 -1264 -233 86 -1264 94 137 -1 -1264 -1264 158 -159 -1264 -1264 167 -1264 -1264 -1264 -1264 196 -1264 -22 167 -1264 -1264 -1264 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 6.3e+003 0.390625 0.000000 0.406250 0.203125 0.000000 0.000000 1.000000 0.000000 0.062500 0.343750 0.000000 0.593750 0.812500 0.187500 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.734375 0.000000 0.265625 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAACA MEME-3 regular expression -------------------------------------------------------------------------------- [GAT]G[TC]AAA[CT]A -------------------------------------------------------------------------------- Time 20.03 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCAGG MEME-4 width = 8 sites = 2 llr = 26 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C ::::a::: probability G aaaa::aa matrix T :::::::: bits 2.4 ***** ** 2.2 ***** ** 1.9 ***** ** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13560200-13560320 4 2.62e-06 CTT GGGGCAGG ACGATCAAGA chr2R:14787871-14787991 109 2.62e-06 AGGGTATGGA GGGGCAGG GGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13560200-13560320 2.6e-06 3_[+4]_109 chr2R:14787871-14787991 2.6e-06 108_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCAGG width=8 seqs=2 chr2R:13560200-13560320 ( 4) GGGGCAGG 1 chr2R:14787871-14787991 ( 109) GGGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.6e+004 -765 -765 241 -765 -765 -765 241 -765 -765 -765 241 -765 -765 -765 241 -765 -765 240 -765 -765 167 -765 -765 -765 -765 -765 241 -765 -765 -765 241 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCAGG MEME-4 regular expression -------------------------------------------------------------------------------- GGGGCAGG -------------------------------------------------------------------------------- Time 26.07 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGCGGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGCGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C ::::a::: probability G aa:a:aaa matrix T :::::::: bits 2.4 ** ***** 2.2 ** ***** 1.9 ** ***** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGCGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3549034-3549154 61 2.62e-06 GTGGGTGAAG GGAGCGGG GCATATAATT chr2R:7473823-7473943 57 2.62e-06 GTCGTGAGCG GGAGCGGG TGGCACGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3549034-3549154 2.6e-06 60_[+5]_52 chr2R:7473823-7473943 2.6e-06 56_[+5]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGCGGG width=8 seqs=2 chr2L:3549034-3549154 ( 61) GGAGCGGG 1 chr2R:7473823-7473943 ( 57) GGAGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.6e+004 -765 -765 241 -765 -765 -765 241 -765 167 -765 -765 -765 -765 -765 241 -765 -765 240 -765 -765 -765 -765 241 -765 -765 -765 241 -765 -765 -765 241 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGAGCGGG -------------------------------------------------------------------------------- Time 32.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12548521-12548641 8.73e-01 120 chr2L:9193891-9194011 1.40e-01 120 chr3L:5627906-5628026 2.47e-01 120 chr2R:24334534-24334654 4.13e-01 120 chr3L:17033437-17033557 2.20e-01 120 chr3R:9215662-9215782 1.46e-02 84_[+5(8.76e-05)]_28 chr3R:21001242-21001362 2.86e-02 120 chr3L:3141488-3141608 2.79e-01 120 chr2R:6119028-6119148 4.64e-01 120 chr2R:19128307-19128427 9.99e-01 120 chr3L:5622158-5622278 2.68e-01 120 chr3R:16082584-16082704 9.04e-01 120 chr2R:22796852-22796972 9.25e-01 120 chrX:3967736-3967856 7.62e-02 100_[+1(5.17e-05)]_12 chr3L:17993442-17993562 4.34e-03 24_[+3(3.24e-05)]_32_[+3(8.65e-05)]_\ 28_[+2(6.29e-05)]_12 chr2L:12588989-12589109 8.07e-01 120 chrX:581978-582098 6.39e-03 20_[+4(8.76e-05)]_92 chr2L:16714025-16714145 2.16e-01 120 chr3R:11773436-11773556 1.43e-01 120 chrX:9523673-9523793 7.32e-02 120 chr3R:24768091-24768211 9.82e-01 120 chr3R:21835434-21835554 4.22e-01 120 chr3L:17937452-17937572 1.83e-01 120 chr3R:8251684-8251804 1.66e-02 7_[+2(6.29e-05)]_105 chr2R:24324089-24324209 3.31e-01 120 chr3L:19037185-19037305 2.61e-01 120 chr2R:11403181-11403301 9.69e-02 76_[+3(3.24e-05)]_36 chr3L:11276225-11276345 2.59e-03 120 chr2R:22403226-22403346 9.62e-02 120 chr2L:9695842-9695962 6.99e-01 120 chrX:8671777-8671897 9.15e-01 120 chr3R:20262816-20262936 7.30e-01 120 chrX:3354499-3354619 6.91e-02 120 chr2L:8289920-8290040 1.39e-01 120 chr2R:8584990-8585110 2.16e-01 120 chr2R:13623520-13623640 9.29e-03 75_[+2(1.59e-06)]_37 chr2L:6595128-6595248 2.08e-01 120 chr2L:15324225-15324345 6.64e-01 120 chr3R:10354106-10354226 9.60e-01 120 chr2L:14432560-14432680 1.31e-02 48_[+1(5.17e-05)]_64 chr3L:5983766-5983886 2.88e-02 120 chr3L:591462-591582 8.77e-01 120 chr2L:18934738-18934858 1.13e-01 120 chr3R:10599033-10599153 1.22e-01 120 chr2L:12641533-12641653 7.43e-01 120 chr3R:30812079-30812199 6.22e-02 63_[+1(5.17e-05)]_49 chr2R:11559254-11559374 5.69e-01 120 chr3R:21825289-21825409 2.69e-01 120 chr3R:16801197-16801317 8.96e-01 120 chr2R:17086972-17087092 5.16e-01 120 chr3R:10514415-10514535 7.00e-04 21_[+1(5.17e-05)]_37_[+5(8.76e-05)]_\ 46 chr3L:11512806-11512926 1.00e+00 120 chr2L:2967021-2967141 1.90e-01 120 chr3R:13817620-13817740 1.75e-03 77_[+2(2.85e-05)]_35 chr2R:14787871-14787991 5.56e-05 108_[+4(2.62e-06)]_4 chr3R:10124979-10125099 3.06e-01 120 chr2R:8659053-8659173 9.95e-01 120 chr3L:19181394-19181514 5.27e-01 120 chr2R:8985551-8985671 1.20e-01 120 chrX:18523341-18523461 6.43e-01 120 chr3L:19694193-19694313 1.64e-02 120 chr3L:5017646-5017766 9.99e-01 120 chr2L:3570664-3570784 2.84e-02 35_[+3(8.65e-05)]_64_[+1(5.17e-05)]_\ 5 chr3L:11491995-11492115 4.29e-04 94_[+2(3.18e-06)]_18 chr2L:4365043-4365163 4.04e-01 120 chrX:4677539-4677659 6.05e-05 96_[+2(6.37e-06)]_16 chr4:487713-487833 9.49e-01 120 chr3R:19822249-19822369 2.46e-01 86_[+3(8.65e-05)]_26 chr3L:15670570-15670690 9.82e-01 120 chr3R:24270213-24270333 3.83e-02 120 chr2L:3555816-3555936 9.81e-01 120 chr3L:3843127-3843247 4.63e-01 120 chr3R:16630672-16630792 7.84e-01 120 chr2L:10543177-10543297 1.55e-03 8_[+3(8.65e-05)]_104 chrX:12674063-12674183 6.38e-01 120 chr3R:8336312-8336432 9.94e-01 120 chr2L:16637320-16637440 7.70e-01 120 chr3R:8155910-8156030 4.76e-02 120 chr2R:14009802-14009922 6.82e-01 120 chr2L:7293612-7293732 5.75e-01 120 chr2L:11038984-11039104 3.49e-01 120 chrX:17357497-17357617 3.22e-02 120 chr2L:18556565-18556685 3.09e-03 4_[+3(3.24e-05)]_108 chr2L:22037059-22037179 1.39e-04 26_[+2(1.59e-06)]_86 chr3L:18227476-18227596 3.42e-01 120 chr2L:6252391-6252511 3.87e-02 120 chr3R:12701385-12701505 1.72e-01 120 chr2L:3153055-3153175 9.93e-01 120 chr2R:12008933-12009053 5.46e-03 120 chrX:3024685-3024805 4.20e-01 120 chr3L:12062277-12062397 9.43e-01 120 chr3L:14354800-14354920 1.16e-01 120 chrX:9082735-9082855 8.84e-01 120 chr2L:10505019-10505139 5.50e-03 108_[+5(8.76e-05)]_4 chr3R:13404983-13405103 9.78e-01 120 chrX:1972328-1972448 7.95e-01 120 chr3R:23134817-23134937 1.50e-04 33_[+3(3.24e-05)]_15_[+2(1.80e-05)]_\ 56 chrX:17872418-17872538 3.42e-02 65_[+3(3.24e-05)]_47 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chrX:17510638-17510758 7.64e-01 120 chr3L:19040490-19040610 2.08e-01 120 chrX:2462110-2462230 6.41e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************