******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG33213.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:22261171-22261291 1.0000 120 chr2L:20104609-20104729 1.0000 120 chr3R:3374276-3374396 1.0000 120 chrX:4936118-4936238 1.0000 120 chr2L:21712-21832 1.0000 120 chr4:834989-835109 1.0000 120 chrX:11579005-11579125 1.0000 120 chr3L:24231495-24231615 1.0000 120 chrX:127367-127487 1.0000 120 chr2L:18854-18974 1.0000 120 chr3L:23279190-23279310 1.0000 120 chr3R:2411911-2412031 1.0000 120 chr3R:3734103-3734223 1.0000 120 chr2R:4595177-4595297 1.0000 120 chrX:4931150-4931270 1.0000 120 chr3L:2244184-2244304 1.0000 120 chr2L:20115967-20116087 1.0000 120 chr4:979967-980087 1.0000 120 chr2R:1243499-1243619 1.0000 120 chr2L:20148490-20148610 1.0000 120 chr3L:23015852-23015972 1.0000 120 chr2R:2079782-2079902 1.0000 120 chr2R:1243718-1243838 1.0000 120 chr2R:4729008-4729128 1.0000 120 chr4:835896-836016 1.0000 120 chr3L:24536063-24536183 1.0000 120 chr2L:6566150-6566270 1.0000 120 chr2R:5604834-5604954 1.0000 120 chr3R:16656236-16656356 1.0000 120 chrX:6756299-6756419 1.0000 120 chr2R:1514153-1514273 1.0000 120 chrX:4956076-4956196 1.0000 120 chr3L:23258615-23258735 1.0000 120 chr2L:20066282-20066402 1.0000 120 chr2R:4188127-4188247 1.0000 120 chr2R:4730351-4730471 1.0000 120 chr4:721944-722064 1.0000 120 chr2R:6494383-6494503 1.0000 120 chr3L:27279199-27279319 1.0000 120 chr2R:20603306-20603426 1.0000 120 chr2L:20638597-20638717 1.0000 120 chr3R:21386244-21386364 1.0000 120 chr3L:20495258-20495378 1.0000 120 chr3R:3118106-3118226 1.0000 120 chr2R:4242978-4243098 1.0000 120 chr3L:26014163-26014283 1.0000 120 chr3L:15816898-15817018 1.0000 120 chr2L:18878603-18878723 1.0000 120 chr3L:20800300-20800420 1.0000 120 chrX:6759415-6759535 1.0000 120 chr2R:4013994-4014114 1.0000 120 chr2L:23176097-23176217 1.0000 120 chr2R:4272493-4272613 1.0000 120 chr2L:21221199-21221319 1.0000 120 chr3R:4052834-4052954 1.0000 120 chr4:1084815-1084935 1.0000 120 chr4:796674-796794 1.0000 120 chr3R:4397873-4397993 1.0000 120 chr3L:27173068-27173188 1.0000 120 chr2L:21051964-21052084 1.0000 120 chr3L:23580704-23580824 1.0000 120 chrX:3173159-3173279 1.0000 120 chr3R:21295797-21295917 1.0000 120 chr2R:2565410-2565530 1.0000 120 chr3R:25097542-25097662 1.0000 120 chr4:68712-68832 1.0000 120 chr2R:4471023-4471143 1.0000 120 chr3R:4081885-4082005 1.0000 120 chr2R:9972767-9972887 1.0000 120 chr2R:4829155-4829275 1.0000 120 chr2R:22912001-22912121 1.0000 120 chr3R:20252596-20252716 1.0000 120 chr2R:9810755-9810875 1.0000 120 chr2L:22169174-22169294 1.0000 120 chrX:16695787-16695907 1.0000 120 chr3R:28345420-28345540 1.0000 120 chr2L:2383095-2383215 1.0000 120 chr3R:6708981-6709101 1.0000 120 chr3L:14671697-14671817 1.0000 120 chr3R:15438143-15438263 1.0000 120 chr2R:9291663-9291783 1.0000 120 chr3L:23125866-23125986 1.0000 120 chrX:14955266-14955386 1.0000 120 chr2R:4324886-4325006 1.0000 120 chr2R:17098557-17098677 1.0000 120 chr3L:15837404-15837524 1.0000 120 chr2L:7065856-7065976 1.0000 120 chr2R:2846661-2846781 1.0000 120 chr3L:1576568-1576688 1.0000 120 chr3L:3334962-3335082 1.0000 120 chr2R:4782915-4783035 1.0000 120 chr2R:20562333-20562453 1.0000 120 chr2R:15532243-15532363 1.0000 120 chr3R:27151583-27151703 1.0000 120 chr2R:12140524-12140644 1.0000 120 chr2R:10075590-10075710 1.0000 120 chr2R:5652829-5652949 1.0000 120 chr3L:24028363-24028483 1.0000 120 chr3L:4021359-4021479 1.0000 120 chr3R:23820494-23820614 1.0000 120 chr2L:19181700-19181820 1.0000 120 chr2R:9578965-9579085 1.0000 120 chrX:2419660-2419780 1.0000 120 chr2R:17581494-17581614 1.0000 120 chr2L:20647443-20647563 1.0000 120 chr2R:1527049-1527169 1.0000 120 chrX:1289066-1289186 1.0000 120 chr3R:26945371-26945491 1.0000 120 chr2R:4012748-4012868 1.0000 120 chr3R:20621861-20621981 1.0000 120 chr3L:24976112-24976232 1.0000 120 chr2L:20223111-20223231 1.0000 120 chr4:1181946-1182066 1.0000 120 chr2R:11451847-11451967 1.0000 120 chrX:18137047-18137167 1.0000 120 chr4:936440-936560 1.0000 120 chr3R:13683057-13683177 1.0000 120 chr2L:17603321-17603441 1.0000 120 chr3R:22639543-22639663 1.0000 120 chr2L:10517256-10517376 1.0000 120 chr3R:31985735-31985855 1.0000 120 chrX:17305692-17305812 1.0000 120 chr3L:5927675-5927795 1.0000 120 chr4:1146561-1146681 1.0000 120 chr3L:25115931-25116051 1.0000 120 chr3L:25120560-25120680 1.0000 120 chr3R:9006359-9006479 1.0000 120 chr3R:24360136-24360256 1.0000 120 chrX:6756503-6756623 1.0000 120 chr2R:25253149-25253269 1.0000 120 chr3R:9543582-9543702 1.0000 120 chrX:19762329-19762449 1.0000 120 chrX:18515312-18515432 1.0000 120 chrX:1772689-1772809 1.0000 120 chrX:796773-796893 1.0000 120 chr2L:6527110-6527230 1.0000 120 chr3R:6780203-6780323 1.0000 120 chr3L:3224860-3224980 1.0000 120 chr3R:30946459-30946579 1.0000 120 chr2L:21397384-21397504 1.0000 120 chr4:697568-697688 1.0000 120 chrX:5332415-5332535 1.0000 120 chr3L:5749764-5749884 1.0000 120 chr3R:21155987-21156107 1.0000 120 chr2L:17784774-17784894 1.0000 120 chrX:758936-759056 1.0000 120 chr3R:20908801-20908921 1.0000 120 chr2L:9330647-9330767 1.0000 120 chr3L:23714886-23715006 1.0000 120 chr3L:6550225-6550345 1.0000 120 chr2L:11517185-11517305 1.0000 120 chr3L:607058-607178 1.0000 120 chr3L:28012651-28012771 1.0000 120 chr2R:7387212-7387332 1.0000 120 chr3R:12422690-12422810 1.0000 120 chr3R:16260493-16260613 1.0000 120 chrX:17077905-17078025 1.0000 120 chr3L:2237247-2237367 1.0000 120 chr2R:4544666-4544786 1.0000 120 chr2L:19185960-19186080 1.0000 120 chrX:7678990-7679110 1.0000 120 chr2R:5293914-5294034 1.0000 120 chr3R:19011115-19011235 1.0000 120 chrX:7722026-7722146 1.0000 120 chr3R:30563110-30563230 1.0000 120 chr3R:21822675-21822795 1.0000 120 chr3L:692873-692993 1.0000 120 chrX:18385203-18385323 1.0000 120 chr3R:5393828-5393948 1.0000 120 chrX:4956281-4956401 1.0000 120 chr2L:9711273-9711393 1.0000 120 chr3R:13309273-13309393 1.0000 120 chr3R:11679660-11679780 1.0000 120 chr3R:25982843-25982963 1.0000 120 chr3R:4197129-4197249 1.0000 120 chr3R:5438927-5439047 1.0000 120 chr3R:6170862-6170982 1.0000 120 chr3R:31458186-31458306 1.0000 120 chr3L:21533684-21533804 1.0000 120 chr2L:16679969-16680089 1.0000 120 chrX:8094007-8094127 1.0000 120 chrX:9089413-9089533 1.0000 120 chr4:1060878-1060998 1.0000 120 chrX:9250316-9250436 1.0000 120 chr3R:12712581-12712701 1.0000 120 chrX:20165943-20166063 1.0000 120 chr2R:5697706-5697826 1.0000 120 chr2L:7890842-7890962 1.0000 120 chr3R:16957883-16958003 1.0000 120 chr2R:5090484-5090604 1.0000 120 chrX:19601786-19601906 1.0000 120 chr3L:11711400-11711520 1.0000 120 chr2L:12546646-12546766 1.0000 120 chr3R:5217436-5217556 1.0000 120 chrX:4939106-4939226 1.0000 120 chr2R:5981804-5981924 1.0000 120 chr2L:17384642-17384762 1.0000 120 chr3R:6646807-6646927 1.0000 120 chrX:21035355-21035475 1.0000 120 chr2R:4243182-4243302 1.0000 120 chr2R:21522172-21522292 1.0000 120 chr2L:18944228-18944348 1.0000 120 chr2R:19141519-19141639 1.0000 120 chr2L:3303622-3303742 1.0000 120 chr2R:5967748-5967868 1.0000 120 chr3R:6350784-6350904 1.0000 120 chr2L:8083253-8083373 1.0000 120 chr3R:26056509-26056629 1.0000 120 chr3R:11806929-11807049 1.0000 120 chr2L:8543280-8543400 1.0000 120 chr3R:21408533-21408653 1.0000 120 chr2R:6464951-6465071 1.0000 120 chr2R:17412667-17412787 1.0000 120 chr2L:12172923-12173043 1.0000 120 chrX:10786877-10786997 1.0000 120 chrX:23013298-23013418 1.0000 120 chr2L:6467666-6467786 1.0000 120 chr4:1053792-1053912 1.0000 120 chrX:1215133-1215253 1.0000 120 chrX:15591744-15591864 1.0000 120 chr2L:22239817-22239937 1.0000 120 chr3L:9968361-9968481 1.0000 120 chr2L:12520426-12520546 1.0000 120 chr3L:3811181-3811301 1.0000 120 chr3L:18618272-18618392 1.0000 120 chrX:1399802-1399922 1.0000 120 chr2R:12518978-12519098 1.0000 120 chr2R:1264204-1264324 1.0000 120 chrX:16096642-16096762 1.0000 120 chr3R:19094905-19095025 1.0000 120 chr3L:11107550-11107670 1.0000 120 chr3L:11681886-11682006 1.0000 120 chr3L:20497343-20497463 1.0000 120 chrX:7291308-7291428 1.0000 120 chr2R:1345104-1345224 1.0000 120 chr2L:12093725-12093845 1.0000 120 chr4:210157-210277 1.0000 120 chr2L:143235-143355 1.0000 120 chr2L:21262895-21263015 1.0000 120 chrX:16448547-16448667 1.0000 120 chr3R:9003928-9004048 1.0000 120 chr2R:18421172-18421292 1.0000 120 chr3R:11581473-11581593 1.0000 120 chr2L:8478107-8478227 1.0000 120 chr2R:21685170-21685290 1.0000 120 chr2R:25183114-25183234 1.0000 120 chr3L:16842389-16842509 1.0000 120 chrX:5312133-5312253 1.0000 120 chr3R:27559128-27559248 1.0000 120 chrX:10367792-10367912 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG33213/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG33213.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.208 G 0.206 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.208 G 0.206 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-1 width = 8 sites = 47 llr = 440 E-value = 1.0e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1a:9: pos.-specific C ::29:a:a probability G 99:::::: matrix T 118::::: bits 2.3 * 2.1 * * 1.8 * * * * 1.6 ** *** * Relative 1.4 ** ***** Entropy 1.1 ******** (13.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:27559128-27559248 73 9.51e-06 CTGGCAGTGC GGTCACAC CAATTCGATG chr2L:21262895-21263015 68 9.51e-06 TGTACACTGC GGTCACAC TGGTTCGGAC chrX:7291308-7291428 90 9.51e-06 TTCTAGCAGG GGTCACAC TGTTGGCGCA chr3L:3811181-3811301 80 9.51e-06 GACTCCCTCT GGTCACAC TGCCCTGTTC chr2L:12172923-12173043 75 9.51e-06 CTGCTCACAC GGTCACAC TGCTATTTAC chr3R:6646807-6646927 97 9.51e-06 GTCCATCGAC GGTCACAC TTACGCGTGT chr2R:5981804-5981924 71 9.51e-06 TCCGCGTACT GGTCACAC AGCTTTTTGC chr2L:12546646-12546766 28 9.51e-06 CACATATAGC GGTCACAC TATACTGTTC chrX:9250316-9250436 13 9.51e-06 CGTGTATTTT GGTCACAC TGTGAGAAAA chrX:18137047-18137167 113 9.51e-06 TAAGAAGAAC GGTCACAC chr3R:20621861-20621981 95 9.51e-06 CTTAGTTGAC GGTCACAC AGCGCACCGA chr3R:26945371-26945491 62 9.51e-06 TCAACAGAAT GGTCACAC TTTATAAATA chr2R:17581494-17581614 95 9.51e-06 AAAACGGACT GGTCACAC TACGCAGTGC chr3R:23820494-23820614 94 9.51e-06 CTCCCGCTGC GGTCACAC TAAGTCCGAA chr2R:4324886-4325006 48 9.51e-06 CAATATTAGG GGTCACAC TTCAAAAATA chr3R:25097542-25097662 76 9.51e-06 CTGCCCAGGC GGTCACAC TAAAAATACC chr2L:21051964-21052084 68 9.51e-06 CCACGATTTT GGTCACAC TACTGCGCCA chr3R:4397873-4397993 65 9.51e-06 CCCTTGTGCT GGTCACAC TTATATCGCA chr2L:20066282-20066402 86 9.51e-06 GCTTGCAAGC GGTCACAC AGTTGTTATT chr2L:20148490-20148610 6 9.51e-06 CGGAG GGTCACAC TCGACCAAGC chrX:11579005-11579125 71 9.51e-06 TTCGCGGCCT GGTCACAC TAAGCTAGGG chr2L:20104609-20104729 90 9.51e-06 CGAGATATGC GGTCACAC CAGGCCAAGC chrX:23013298-23013418 3 1.62e-05 CT GGCCACAC TGCGGCCTCA chr3R:30563110-30563230 67 1.62e-05 TTAGACCAAC GGCCACAC TCCGATGTTC chr3L:1576568-1576688 103 1.62e-05 TTCCGGCTGC GGCCACAC TGCAAAACCC chr2L:21221199-21221319 111 1.62e-05 GTGACTGCGC GGCCACAC TG chr2R:4544666-4544786 98 2.94e-05 cactgccacg ggtaacac acaatttgaa chrX:1289066-1289186 60 2.94e-05 TGTACCAGCT GGTAACAC TTCCTAATCA chrX:16448547-16448667 102 4.31e-05 TCGCCCGTGT GTTCACAC TGCGGTTTGC chr2R:4243182-4243302 15 4.31e-05 ATTGTGAGCC GTTCACAC TGGCTTCCGC chr3R:12712581-12712701 74 4.31e-05 CTAAAACCTT GTTCACAC TGCACGCGCC chr3L:25115931-25116051 65 4.31e-05 AATTATTCTT GTTCACAC TGTGCCATAA chr3R:13309273-13309393 109 5.68e-05 TTCGACCCAC TGTCACAC TGTT chr3L:23258615-23258735 60 5.68e-05 TTAGTGCGAA Tgtcacac aagcggactt chr3L:692873-692993 70 6.65e-05 TTTAAGTCGT GGTCACTC TGATTTCGAG chr2L:9330647-9330767 24 6.65e-05 TAACCCAAAC GGTCACTC TCCATCACTA chr2R:19141519-19141639 113 7.31e-05 ACCACCATCT GGGCACAC chr2L:12093725-12093845 50 9.35e-05 GCAGATGAAC GGTCCCAC TGATTGATTC chr3R:25982843-25982963 45 9.35e-05 TGTGGCTTAT GGTCACCC TAATGAATTC chr3L:14671697-14671817 73 9.35e-05 GAACGCTAGA GGTCGCAC ATGTGCCAAT chr3R:19094905-19095025 96 1.07e-04 CCCCAGCTCT GGTCACAT TCGTACTCAA chrX:18515312-18515432 92 1.07e-04 CGCGACGAAC GGTCACAT TGACCACCGC chr2L:143235-143355 70 1.26e-04 TTCTTAAACA GCTCACAC ATTACCGATG chrX:17305692-17305812 62 1.26e-04 GCATGGATCT GGCAACAC TCTCCAAAAA chr3L:20800300-20800420 94 1.26e-04 CCAACGATCT GGCAACAC CGTCTGCCAT chr4:979967-980087 50 1.26e-04 AGTGCGTAAT GGCAACAC CCAATATGTG chr3R:22639543-22639663 80 1.45e-04 AAGCAATCGT TGCCACAC TGGGCTGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:27559128-27559248 9.5e-06 72_[+1]_40 chr2L:21262895-21263015 9.5e-06 67_[+1]_45 chrX:7291308-7291428 9.5e-06 89_[+1]_23 chr3L:3811181-3811301 9.5e-06 79_[+1]_33 chr2L:12172923-12173043 9.5e-06 74_[+1]_38 chr3R:6646807-6646927 9.5e-06 96_[+1]_16 chr2R:5981804-5981924 9.5e-06 70_[+1]_42 chr2L:12546646-12546766 9.5e-06 27_[+1]_85 chrX:9250316-9250436 9.5e-06 12_[+1]_100 chrX:18137047-18137167 9.5e-06 112_[+1] chr3R:20621861-20621981 9.5e-06 94_[+1]_18 chr3R:26945371-26945491 9.5e-06 61_[+1]_51 chr2R:17581494-17581614 9.5e-06 94_[+1]_18 chr3R:23820494-23820614 9.5e-06 93_[+1]_19 chr2R:4324886-4325006 9.5e-06 47_[+1]_65 chr3R:25097542-25097662 9.5e-06 75_[+1]_37 chr2L:21051964-21052084 9.5e-06 67_[+1]_45 chr3R:4397873-4397993 9.5e-06 64_[+1]_48 chr2L:20066282-20066402 9.5e-06 85_[+1]_27 chr2L:20148490-20148610 9.5e-06 5_[+1]_107 chrX:11579005-11579125 9.5e-06 70_[+1]_42 chr2L:20104609-20104729 9.5e-06 89_[+1]_23 chrX:23013298-23013418 1.6e-05 2_[+1]_110 chr3R:30563110-30563230 1.6e-05 66_[+1]_46 chr3L:1576568-1576688 1.6e-05 102_[+1]_10 chr2L:21221199-21221319 1.6e-05 110_[+1]_2 chr2R:4544666-4544786 2.9e-05 97_[+1]_15 chrX:1289066-1289186 2.9e-05 59_[+1]_53 chrX:16448547-16448667 4.3e-05 101_[+1]_11 chr2R:4243182-4243302 4.3e-05 14_[+1]_98 chr3R:12712581-12712701 4.3e-05 73_[+1]_39 chr3L:25115931-25116051 4.3e-05 64_[+1]_48 chr3R:13309273-13309393 5.7e-05 108_[+1]_4 chr3L:23258615-23258735 5.7e-05 59_[+1]_53 chr3L:692873-692993 6.6e-05 69_[+1]_43 chr2L:9330647-9330767 6.6e-05 23_[+1]_89 chr2R:19141519-19141639 7.3e-05 112_[+1] chr2L:12093725-12093845 9.3e-05 49_[+1]_63 chr3R:25982843-25982963 9.3e-05 44_[+1]_68 chr3L:14671697-14671817 9.3e-05 72_[+1]_40 chr3R:19094905-19095025 0.00011 95_[+1]_17 chrX:18515312-18515432 0.00011 91_[+1]_21 chr2L:143235-143355 0.00013 69_[+1]_43 chrX:17305692-17305812 0.00013 61_[+1]_51 chr3L:20800300-20800420 0.00013 93_[+1]_19 chr4:979967-980087 0.00013 49_[+1]_63 chr3R:22639543-22639663 0.00015 79_[+1]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=47 chr3R:27559128-27559248 ( 73) GGTCACAC 1 chr2L:21262895-21263015 ( 68) GGTCACAC 1 chrX:7291308-7291428 ( 90) GGTCACAC 1 chr3L:3811181-3811301 ( 80) GGTCACAC 1 chr2L:12172923-12173043 ( 75) GGTCACAC 1 chr3R:6646807-6646927 ( 97) GGTCACAC 1 chr2R:5981804-5981924 ( 71) GGTCACAC 1 chr2L:12546646-12546766 ( 28) GGTCACAC 1 chrX:9250316-9250436 ( 13) GGTCACAC 1 chrX:18137047-18137167 ( 113) GGTCACAC 1 chr3R:20621861-20621981 ( 95) GGTCACAC 1 chr3R:26945371-26945491 ( 62) GGTCACAC 1 chr2R:17581494-17581614 ( 95) GGTCACAC 1 chr3R:23820494-23820614 ( 94) GGTCACAC 1 chr2R:4324886-4325006 ( 48) GGTCACAC 1 chr3R:25097542-25097662 ( 76) GGTCACAC 1 chr2L:21051964-21052084 ( 68) GGTCACAC 1 chr3R:4397873-4397993 ( 65) GGTCACAC 1 chr2L:20066282-20066402 ( 86) GGTCACAC 1 chr2L:20148490-20148610 ( 6) GGTCACAC 1 chrX:11579005-11579125 ( 71) GGTCACAC 1 chr2L:20104609-20104729 ( 90) GGTCACAC 1 chrX:23013298-23013418 ( 3) GGCCACAC 1 chr3R:30563110-30563230 ( 67) GGCCACAC 1 chr3L:1576568-1576688 ( 103) GGCCACAC 1 chr2L:21221199-21221319 ( 111) GGCCACAC 1 chr2R:4544666-4544786 ( 98) GGTAACAC 1 chrX:1289066-1289186 ( 60) GGTAACAC 1 chrX:16448547-16448667 ( 102) GTTCACAC 1 chr2R:4243182-4243302 ( 15) GTTCACAC 1 chr3R:12712581-12712701 ( 74) GTTCACAC 1 chr3L:25115931-25116051 ( 65) GTTCACAC 1 chr3R:13309273-13309393 ( 109) TGTCACAC 1 chr3L:23258615-23258735 ( 60) TGTCACAC 1 chr3L:692873-692993 ( 70) GGTCACTC 1 chr2L:9330647-9330767 ( 24) GGTCACTC 1 chr2R:19141519-19141639 ( 113) GGGCACAC 1 chr2L:12093725-12093845 ( 50) GGTCCCAC 1 chr3R:25982843-25982963 ( 45) GGTCACCC 1 chr3L:14671697-14671817 ( 73) GGTCGCAC 1 chr3R:19094905-19095025 ( 96) GGTCACAT 1 chrX:18515312-18515432 ( 92) GGTCACAT 1 chr2L:143235-143355 ( 70) GCTCACAC 1 chrX:17305692-17305812 ( 62) GGCAACAC 1 chr3L:20800300-20800420 ( 94) GGCAACAC 1 chr4:979967-980087 ( 50) GGCAACAC 1 chr3R:22639543-22639663 ( 80) TGCCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3123 E= 1.0e-026 -1220 -1220 218 -221 -1220 -329 212 -180 -1220 -29 -327 145 -145 210 -1220 -1220 172 -329 -327 -1220 -1220 226 -1220 -1220 169 -329 -1220 -279 -1220 220 -1220 -279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.0e-026 0.000000 0.000000 0.936170 0.063830 0.000000 0.021277 0.893617 0.085106 0.000000 0.170213 0.021277 0.808511 0.106383 0.893617 0.000000 0.000000 0.957447 0.021277 0.021277 0.000000 0.000000 1.000000 0.000000 0.000000 0.936170 0.021277 0.000000 0.042553 0.000000 0.957447 0.000000 0.042553 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-1 regular expression -------------------------------------------------------------------------------- GGTCACAC -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGRCC MEME-2 width = 8 sites = 42 llr = 399 E-value = 7.4e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::15:: pos.-specific C :::::19a probability G a:a:841: matrix T :9:a1::: bits 2.3 * * * 2.1 * * * 1.8 * ** ** 1.6 * ** ** Relative 1.4 ***** ** Entropy 1.1 ***** ** (13.7 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:27559128-27559248 9 1.64e-05 TCGACTCG GTGTGACC GTTCGCAGAA chr4:210157-210277 111 1.64e-05 GTGTTTCTAT GTGTGGCC CA chr3R:5217436-5217556 2 1.64e-05 G GTGTGACC GCAGGCAGGA chrX:9250316-9250436 47 1.64e-05 AATCAATTCA GTGTGGCC AGAGTGTGTC chr4:1060878-1060998 5 1.64e-05 AGCA GTGTGACC TTAACACGAG chrX:8094007-8094127 41 1.64e-05 CGCCTGCAGA GTGTGACC ATTGATGACC chr3L:21533684-21533804 4 1.64e-05 GCA GTGTGACC AAAGCCATTG chrX:18385203-18385323 8 1.64e-05 TAACAGG GTGTGACC GTGCGCGGCG chr3L:692873-692993 11 1.64e-05 CATTGTCCAA GTGTGGCC GAGTCATGAG chr3R:21155987-21156107 45 1.64e-05 TGTTTTTTAA GTGTGACC GCCGCCGGAA chr3R:9006359-9006479 76 1.64e-05 TTAGCTTTCA GTGTGACC AGGCCGCGTC chr2L:19181700-19181820 5 1.64e-05 GGCA GTGTGACC AGATACAAGT chr2R:10075590-10075710 69 1.64e-05 ACGGGCAACA GTGTGGCC GTTCGTTAAT chr2R:15532243-15532363 20 1.64e-05 CTATCGATGA GTGTGACC GTGTGCAGGG chr2L:2383095-2383215 13 1.64e-05 ATTTATTTAA GTGTGACC AAATGATTTC chr2R:9810755-9810875 101 1.64e-05 AGTAAATTCA GTGTGGCC AGATTACAGT chr2R:4471023-4471143 32 1.64e-05 GCCTCATCTA GTGTGACC GTGGATGGCG chr2L:20638597-20638717 84 1.64e-05 ACTCGGAACA GTGTGACC AGCCGCCAGT chr2L:20115967-20116087 95 1.64e-05 GCCTATATTA GTGTGGCC AGCCTGCTTG chr3L:2244184-2244304 52 1.64e-05 GAACTGTGCA GTGTGGCC GTATTTTTTG chr2L:18854-18974 65 1.64e-05 TTTGTGGGCA GTGTGACC ATGTCCAATC chrX:11579005-11579125 8 1.64e-05 GTCATTA GTGTGGCC AAAACTCGAA chr2L:21712-21832 32 1.64e-05 TTTGTGGGCA GTGTGACC ATGTCCAATC chr2L:22261171-22261291 87 1.64e-05 gccgcccata gtgtggcc gcgtgttgag chr2R:19141519-19141639 4 2.33e-05 TAA GTGTGCCC AGACTTGTCT chrX:7722026-7722146 1 2.33e-05 . GTGTGCCC ATTCGATCTC chr4:936440-936560 48 2.33e-05 AAGTCCATTA GTGTGCCC GTGTAAAACG chr2R:6494383-6494503 80 2.33e-05 GCTCTGCTTA GTGTGCCC GTCGTCAGCG chr3R:9003928-9004048 57 4.69e-05 AGCTGAACGC GTGTTGCC ATATCAAGTT chr2L:6467666-6467786 82 4.69e-05 CACGCTTCAA GTGTTACC GTAGAGCGGA chr3R:16260493-16260613 3 4.69e-05 AA GTGTTGCC GTTGCGTGAA chr3L:5749764-5749884 66 4.69e-05 GCCAGGTGGC GTGTTGCC CTCTGGAAGT chr2L:20647443-20647563 110 4.69e-05 GCCGCACCAC GTGTTGCC CAT chr3L:11711400-11711520 96 6.32e-05 AACACAAAAA GTGTGAGC ATATGGCGCC chrX:15591744-15591864 26 8.64e-05 GTAAATATGT GTGTAGCC GAATGCTAAT chr3R:12422690-12422810 31 8.64e-05 AATTTTAAAA GTGTAACC ATAAAAAGTC chr3R:20252596-20252716 65 8.64e-05 CGCGGCGCCA GTGTAACC GTATCATTCG chr2R:17581494-17581614 27 1.02e-04 GCCGGTGACA GAGTGGCC AGCGGCTCTT chr3L:4021359-4021479 13 1.02e-04 TAGTATTTTA GAGTGACC CTGCACTCTA chr3L:23279190-23279310 61 1.24e-04 taaagtgtga gcgtgacc gtttcaggcg chrX:1399802-1399922 108 1.31e-04 AGTCTGGAGT GTGTGCGC GGTTC chrX:758936-759056 83 1.31e-04 CTCATCACTG GTGTGCGC TCTGTTTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:27559128-27559248 1.6e-05 8_[+2]_104 chr4:210157-210277 1.6e-05 110_[+2]_2 chr3R:5217436-5217556 1.6e-05 1_[+2]_111 chrX:9250316-9250436 1.6e-05 46_[+2]_66 chr4:1060878-1060998 1.6e-05 4_[+2]_108 chrX:8094007-8094127 1.6e-05 40_[+2]_72 chr3L:21533684-21533804 1.6e-05 3_[+2]_109 chrX:18385203-18385323 1.6e-05 7_[+2]_105 chr3L:692873-692993 1.6e-05 10_[+2]_102 chr3R:21155987-21156107 1.6e-05 44_[+2]_68 chr3R:9006359-9006479 1.6e-05 75_[+2]_37 chr2L:19181700-19181820 1.6e-05 4_[+2]_108 chr2R:10075590-10075710 1.6e-05 68_[+2]_44 chr2R:15532243-15532363 1.6e-05 19_[+2]_93 chr2L:2383095-2383215 1.6e-05 12_[+2]_100 chr2R:9810755-9810875 1.6e-05 100_[+2]_12 chr2R:4471023-4471143 1.6e-05 31_[+2]_81 chr2L:20638597-20638717 1.6e-05 83_[+2]_29 chr2L:20115967-20116087 1.6e-05 94_[+2]_18 chr3L:2244184-2244304 1.6e-05 51_[+2]_61 chr2L:18854-18974 1.6e-05 64_[+2]_48 chrX:11579005-11579125 1.6e-05 7_[+2]_105 chr2L:21712-21832 1.6e-05 31_[+2]_81 chr2L:22261171-22261291 1.6e-05 86_[+2]_26 chr2R:19141519-19141639 2.3e-05 3_[+2]_109 chrX:7722026-7722146 2.3e-05 [+2]_112 chr4:936440-936560 2.3e-05 47_[+2]_65 chr2R:6494383-6494503 2.3e-05 79_[+2]_33 chr3R:9003928-9004048 4.7e-05 56_[+2]_56 chr2L:6467666-6467786 4.7e-05 81_[+2]_31 chr3R:16260493-16260613 4.7e-05 2_[+2]_110 chr3L:5749764-5749884 4.7e-05 65_[+2]_47 chr2L:20647443-20647563 4.7e-05 109_[+2]_3 chr3L:11711400-11711520 6.3e-05 95_[+2]_17 chrX:15591744-15591864 8.6e-05 25_[+2]_87 chr3R:12422690-12422810 8.6e-05 30_[+2]_82 chr3R:20252596-20252716 8.6e-05 64_[+2]_48 chr2R:17581494-17581614 0.0001 26_[+2]_86 chr3L:4021359-4021479 0.0001 12_[+2]_100 chr3L:23279190-23279310 0.00012 60_[+2]_52 chrX:1399802-1399922 0.00013 107_[+2]_5 chrX:758936-759056 0.00013 82_[+2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGRCC width=8 seqs=42 chr3R:27559128-27559248 ( 9) GTGTGACC 1 chr4:210157-210277 ( 111) GTGTGGCC 1 chr3R:5217436-5217556 ( 2) GTGTGACC 1 chrX:9250316-9250436 ( 47) GTGTGGCC 1 chr4:1060878-1060998 ( 5) GTGTGACC 1 chrX:8094007-8094127 ( 41) GTGTGACC 1 chr3L:21533684-21533804 ( 4) GTGTGACC 1 chrX:18385203-18385323 ( 8) GTGTGACC 1 chr3L:692873-692993 ( 11) GTGTGGCC 1 chr3R:21155987-21156107 ( 45) GTGTGACC 1 chr3R:9006359-9006479 ( 76) GTGTGACC 1 chr2L:19181700-19181820 ( 5) GTGTGACC 1 chr2R:10075590-10075710 ( 69) GTGTGGCC 1 chr2R:15532243-15532363 ( 20) GTGTGACC 1 chr2L:2383095-2383215 ( 13) GTGTGACC 1 chr2R:9810755-9810875 ( 101) GTGTGGCC 1 chr2R:4471023-4471143 ( 32) GTGTGACC 1 chr2L:20638597-20638717 ( 84) GTGTGACC 1 chr2L:20115967-20116087 ( 95) GTGTGGCC 1 chr3L:2244184-2244304 ( 52) GTGTGGCC 1 chr2L:18854-18974 ( 65) GTGTGACC 1 chrX:11579005-11579125 ( 8) GTGTGGCC 1 chr2L:21712-21832 ( 32) GTGTGACC 1 chr2L:22261171-22261291 ( 87) GTGTGGCC 1 chr2R:19141519-19141639 ( 4) GTGTGCCC 1 chrX:7722026-7722146 ( 1) GTGTGCCC 1 chr4:936440-936560 ( 48) GTGTGCCC 1 chr2R:6494383-6494503 ( 80) GTGTGCCC 1 chr3R:9003928-9004048 ( 57) GTGTTGCC 1 chr2L:6467666-6467786 ( 82) GTGTTACC 1 chr3R:16260493-16260613 ( 3) GTGTTGCC 1 chr3L:5749764-5749884 ( 66) GTGTTGCC 1 chr2L:20647443-20647563 ( 110) GTGTTGCC 1 chr3L:11711400-11711520 ( 96) GTGTGAGC 1 chrX:15591744-15591864 ( 26) GTGTAGCC 1 chr3R:12422690-12422810 ( 31) GTGTAACC 1 chr3R:20252596-20252716 ( 65) GTGTAACC 1 chr2R:17581494-17581614 ( 27) GAGTGGCC 1 chr3L:4021359-4021479 ( 13) GAGTGACC 1 chr3L:23279190-23279310 ( 61) GCGTGACC 1 chrX:1399802-1399922 ( 108) GTGTGCGC 1 chrX:758936-759056 ( 83) GTGTGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 7.4e-023 -1204 -1204 228 -1204 -261 -313 -1204 165 -1204 -1204 228 -1204 -1204 -1204 -1204 176 -202 -1204 197 -131 78 -54 79 -1204 -1204 216 -153 -1204 -1204 226 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 7.4e-023 0.000000 0.000000 1.000000 0.000000 0.047619 0.023810 0.000000 0.928571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.071429 0.000000 0.809524 0.119048 0.500000 0.142857 0.357143 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGRCC MEME-2 regular expression -------------------------------------------------------------------------------- GTGTG[AG]CC -------------------------------------------------------------------------------- Time 13.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-3 width = 8 sites = 45 llr = 404 E-value = 7.2e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1a:::a:8 pos.-specific C 2::a:::: probability G ::::a::1 matrix T 7:a:::a1 bits 2.3 ** 2.1 ** 1.8 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ****** (12.9 bits) 0.9 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11581473-11581593 83 2.71e-05 CTCTACAAAG TATCGATA ACTTCAGCGA chr3R:9003928-9004048 89 2.71e-05 AAACTTGTGA TATCGATA TTAAATGGAG chr4:210157-210277 93 2.71e-05 GATCAAACAT TATCGATA GTGTTTCTAT chrX:1215133-1215253 82 2.71e-05 TAGGAATGCC TATCGATA CCTATCGCAT chrX:10786877-10786997 83 2.71e-05 AAATACCGCA TATCGATA GTTGCTTTAA chr2R:17412667-17412787 80 2.71e-05 CAGCACTAGT TATCGATA TAATCAGAGA chr3R:6350784-6350904 105 2.71e-05 TTCTGTTCGC TATCGATA TATTGATA chrX:19601786-19601906 47 2.71e-05 ACCACGGCAG TATCGATA TATCGAGCAC chrX:9089413-9089533 78 2.71e-05 AGCCGCGCGT TATCGATA ACAGCCATCG chr3R:4197129-4197249 62 2.71e-05 ATACTTTCAT TATCGATA TGTATGCGTT chr3R:25982843-25982963 108 2.71e-05 ATAAGCGATA TATCGATA GGATG chr2R:4012748-4012868 80 2.71e-05 ttttctgcga tatcgata aatttaatga chrX:14955266-14955386 20 2.71e-05 CGTGCTGATA TATCGATA CTAACGTGAG chr3R:21295797-21295917 2 2.71e-05 T TATCGATA AGCGTGGGTA chr4:1084815-1084935 91 2.71e-05 ATATCGATGC TATCGATA TATGCTTCCT chrX:6759415-6759535 112 2.71e-05 ACTTTAGAAT TATCGATA G chr3L:15816898-15817018 56 2.71e-05 ATTAAACATC TATCGATA GTATCGATTA chr2R:4730351-4730471 62 2.71e-05 TCGATGGAAC TATCGATA CTATCGATGG chr3L:23015852-23015972 87 2.71e-05 CTGGCTCTCT TATCGATA AGTCTAAGTT chr3R:3734103-3734223 91 2.71e-05 CTCCTCATCC TATCGATA GTTTCTGCAG chr3L:23279190-23279310 5 2.71e-05 ggga tatcgata gatatcgggg chr3L:24231495-24231615 64 2.71e-05 CTCCTGATCC TATCGATA GTTTCCTGCA chr2L:16679969-16680089 37 4.61e-05 AACGGATAAC CATCGATA TCAGCGATTT chr3L:24536063-24536183 32 4.61e-05 CTTAAAAAAC CATCGATA GTGCCGACCA chrX:4931150-4931270 94 4.61e-05 CGATGCCAAA CATCGATA TTTTCAAAAA chrX:127367-127487 36 4.61e-05 TTCGAGCACA CATCGATA CTGGCGATAG chrX:4936118-4936238 97 4.61e-05 CGATGCCAAA CATCGATA TTTTCAAAAA chr2L:22261171-22261291 14 4.61e-05 atgatcgtgt catcgata tcggtgagcg chr2R:5967748-5967868 48 6.54e-05 TGTCGATAGT TATCGATG TTGTAAGCTG chr2L:3303622-3303742 67 6.54e-05 TTAGCACATT TATCGATG CACCAAAACC chrX:7722026-7722146 51 6.54e-05 TAATAGCGCC TATCGATG ACGATCAAGA chr2R:15532243-15532363 11 6.54e-05 CTCTTGCGAC TATCGATG AGTGTGACCG chr2L:8478107-8478227 99 1.20e-04 GTTATAAAGT AATCGATA ACACATTCAA chr2R:18421172-18421292 56 1.20e-04 GTTTAATTAC AATCGATA ACGAAGATTG chrX:21035355-21035475 69 1.20e-04 TGGGTATCGT AATCGATA GTTGCGAAAT chr2L:17384642-17384762 37 1.20e-04 TAGCCGCAAC TATCGATT GGCGCGCTGC chr2L:12546646-12546766 95 1.20e-04 TAAATACAAC TATCGATT GTTAAGTTCT chr4:697568-697688 33 1.20e-04 TGGGTTGCCA TATCGATT TCTATATATG chr3R:31985735-31985855 74 1.20e-04 GGGATCGATA TATCGATT GCGTTTTTGA chr2R:4272493-4272613 74 1.20e-04 ctcgataaat aatcgata gggggcttac chr2R:4013994-4014114 97 1.20e-04 AGTTTTACAT TATCGATT GCGGCTGTTA chrX:19762329-19762449 7 1.38e-04 TCGATG GATCGATA AAGCGCGGAC chr3R:16656236-16656356 45 1.38e-04 ATCTTTTTCA GATCGATA TTCATTTCCA chr2L:17603321-17603441 104 1.52e-04 TCAAAAGAGA CATCGATG GTGGCTGTC chr4:834989-835109 47 2.17e-04 ATTACAATCA AATCGATT ATTCATTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11581473-11581593 2.7e-05 82_[+3]_30 chr3R:9003928-9004048 2.7e-05 88_[+3]_24 chr4:210157-210277 2.7e-05 92_[+3]_20 chrX:1215133-1215253 2.7e-05 81_[+3]_31 chrX:10786877-10786997 2.7e-05 82_[+3]_30 chr2R:17412667-17412787 2.7e-05 79_[+3]_33 chr3R:6350784-6350904 2.7e-05 104_[+3]_8 chrX:19601786-19601906 2.7e-05 46_[+3]_66 chrX:9089413-9089533 2.7e-05 77_[+3]_35 chr3R:4197129-4197249 2.7e-05 61_[+3]_51 chr3R:25982843-25982963 2.7e-05 107_[+3]_5 chr2R:4012748-4012868 2.7e-05 79_[+3]_33 chrX:14955266-14955386 2.7e-05 19_[+3]_93 chr3R:21295797-21295917 2.7e-05 1_[+3]_111 chr4:1084815-1084935 2.7e-05 90_[+3]_22 chrX:6759415-6759535 2.7e-05 111_[+3]_1 chr3L:15816898-15817018 2.7e-05 55_[+3]_57 chr2R:4730351-4730471 2.7e-05 61_[+3]_51 chr3L:23015852-23015972 2.7e-05 86_[+3]_26 chr3R:3734103-3734223 2.7e-05 90_[+3]_22 chr3L:23279190-23279310 2.7e-05 4_[+3]_108 chr3L:24231495-24231615 2.7e-05 63_[+3]_49 chr2L:16679969-16680089 4.6e-05 36_[+3]_76 chr3L:24536063-24536183 4.6e-05 31_[+3]_81 chrX:4931150-4931270 4.6e-05 93_[+3]_19 chrX:127367-127487 4.6e-05 35_[+3]_77 chrX:4936118-4936238 4.6e-05 96_[+3]_16 chr2L:22261171-22261291 4.6e-05 13_[+3]_99 chr2R:5967748-5967868 6.5e-05 47_[+3]_65 chr2L:3303622-3303742 6.5e-05 66_[+3]_46 chrX:7722026-7722146 6.5e-05 50_[+3]_62 chr2R:15532243-15532363 6.5e-05 10_[+3]_102 chr2L:8478107-8478227 0.00012 98_[+3]_14 chr2R:18421172-18421292 0.00012 55_[+3]_57 chrX:21035355-21035475 0.00012 68_[+3]_44 chr2L:17384642-17384762 0.00012 36_[+3]_76 chr2L:12546646-12546766 0.00012 94_[+3]_18 chr4:697568-697688 0.00012 32_[+3]_80 chr3R:31985735-31985855 0.00012 73_[+3]_39 chr2R:4272493-4272613 0.00012 73_[+3]_39 chr2R:4013994-4014114 0.00012 96_[+3]_16 chrX:19762329-19762449 0.00014 6_[+3]_106 chr3R:16656236-16656356 0.00014 44_[+3]_68 chr2L:17603321-17603441 0.00015 103_[+3]_9 chr4:834989-835109 0.00022 46_[+3]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=45 chr3R:11581473-11581593 ( 83) TATCGATA 1 chr3R:9003928-9004048 ( 89) TATCGATA 1 chr4:210157-210277 ( 93) TATCGATA 1 chrX:1215133-1215253 ( 82) TATCGATA 1 chrX:10786877-10786997 ( 83) TATCGATA 1 chr2R:17412667-17412787 ( 80) TATCGATA 1 chr3R:6350784-6350904 ( 105) TATCGATA 1 chrX:19601786-19601906 ( 47) TATCGATA 1 chrX:9089413-9089533 ( 78) TATCGATA 1 chr3R:4197129-4197249 ( 62) TATCGATA 1 chr3R:25982843-25982963 ( 108) TATCGATA 1 chr2R:4012748-4012868 ( 80) TATCGATA 1 chrX:14955266-14955386 ( 20) TATCGATA 1 chr3R:21295797-21295917 ( 2) TATCGATA 1 chr4:1084815-1084935 ( 91) TATCGATA 1 chrX:6759415-6759535 ( 112) TATCGATA 1 chr3L:15816898-15817018 ( 56) TATCGATA 1 chr2R:4730351-4730471 ( 62) TATCGATA 1 chr3L:23015852-23015972 ( 87) TATCGATA 1 chr3R:3734103-3734223 ( 91) TATCGATA 1 chr3L:23279190-23279310 ( 5) TATCGATA 1 chr3L:24231495-24231615 ( 64) TATCGATA 1 chr2L:16679969-16680089 ( 37) CATCGATA 1 chr3L:24536063-24536183 ( 32) CATCGATA 1 chrX:4931150-4931270 ( 94) CATCGATA 1 chrX:127367-127487 ( 36) CATCGATA 1 chrX:4936118-4936238 ( 97) CATCGATA 1 chr2L:22261171-22261291 ( 14) CATCGATA 1 chr2R:5967748-5967868 ( 48) TATCGATG 1 chr2L:3303622-3303742 ( 67) TATCGATG 1 chrX:7722026-7722146 ( 51) TATCGATG 1 chr2R:15532243-15532363 ( 11) TATCGATG 1 chr2L:8478107-8478227 ( 99) AATCGATA 1 chr2R:18421172-18421292 ( 56) AATCGATA 1 chrX:21035355-21035475 ( 69) AATCGATA 1 chr2L:17384642-17384762 ( 37) TATCGATT 1 chr2L:12546646-12546766 ( 95) TATCGATT 1 chr4:697568-697688 ( 33) TATCGATT 1 chr3R:31985735-31985855 ( 74) TATCGATT 1 chr2R:4272493-4272613 ( 74) AATCGATA 1 chr2R:4013994-4014114 ( 97) TATCGATT 1 chrX:19762329-19762449 ( 7) GATCGATA 1 chr3R:16656236-16656356 ( 45) GATCGATA 1 chr2L:17603321-17603441 ( 104) CATCGATG 1 chr4:834989-835109 ( 47) AATCGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3386 E= 7.2e-016 -138 -42 -221 122 178 -1214 -1214 -1214 -1214 -1214 -1214 176 -1214 226 -1214 -1214 -1214 -1214 228 -1214 178 -1214 -1214 -1214 -1214 -1214 -1214 176 138 -1214 -89 -115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 7.2e-016 0.111111 0.155556 0.044444 0.688889 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.755556 0.000000 0.111111 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 19.87 secs. ******************************************************************************** ******************************************************************************** MOTIF CGYTGCCA MEME-4 width = 8 sites = 29 llr = 262 E-value = 5.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGYTGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :12::::9 pos.-specific C 7:3::aa1 probability G 19::a::: matrix T 2:5a:::: bits 2.3 *** 2.1 *** 1.8 **** 1.6 * **** Relative 1.4 * ***** Entropy 1.1 * ***** (13.0 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGTTGCCA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYTGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11581473-11581593 54 9.70e-06 TAAACTTGAA CGTTGCCA CCTGGTTTTT chrX:7291308-7291428 46 9.70e-06 TTACGACCAA CGTTGCCA CATACTCGCA chr3L:692873-692993 92 9.70e-06 TTCGAGTCAG CGTTGCCA TACTCATGTA chr3L:5749764-5749884 4 9.70e-06 AAA CGTTGCCA GTGATGCCAG chr3L:14671697-14671817 7 9.70e-06 ATATGG CGTTGCCA GAATTGAAAA chr2R:9972767-9972887 39 9.70e-06 TGGGTAGCAG CGTTGCCA GATAAAGGGA chr4:1084815-1084935 31 9.70e-06 AATATTTCAG CGTTGCCA TATTTGCACC chr4:835896-836016 20 9.70e-06 GGACGATTGG CGTTGCCA TCCCAAAATT chr2L:22261171-22261291 33 9.70e-06 cggtgagcgg cgttgcca ctaccgacat chr3L:24231495-24231615 103 1.65e-05 TGTGCTATCG CGCTGCCA TCACTATCAT chrX:19601786-19601906 3 2.60e-05 TG CGATGCCA GATATACACA chrX:4931150-4931270 84 2.60e-05 GGAGAAACAT CGATGCCA AACATCGATA chrX:4936118-4936238 87 2.60e-05 GGAGACACAT CGATGCCA AACATCGATA chr3L:11711400-11711520 3 3.98e-05 CA TGTTGCCA AGATGATAAA chrX:1289066-1289186 2 3.98e-05 A TGTTGCCA TTACCGTTCT chr3R:9003928-9004048 17 4.95e-05 CCGTTACCAG TGCTGCCA CGCTGCAGTT chrX:18385203-18385323 48 4.95e-05 GCCACGCGAG TGCTGCCA GGGCTGCGCA chr3R:30946459-30946579 48 4.95e-05 GGACACTGAG TGCTGCCA TTCTGATTCC chr4:697568-697688 25 5.91e-05 ACTGGTATTG GGTTGCCA TATCGATTTC chr3L:5927675-5927795 73 5.91e-05 ACAGTTTTAG GGTTGCCA GCTGTTTTTT chr3R:22639543-22639663 44 6.59e-05 ATAAAAACAG GGCTGCCA GACTCATTGA chr2L:3303622-3303742 101 7.96e-05 TAAGCTGCAG CATTGCCA TACTCGATTT chr2R:5967748-5967868 95 8.92e-05 TCTGCACTAG CACTGCCA AAGAAAAATT chr2R:4544666-4544786 88 8.92e-05 agagcgtatc cactgcca cgggtaacac chrX:6759415-6759535 29 8.92e-05 GACACTTGGG CACTGCCA AACGCACACA chr4:979967-980087 107 9.61e-05 GGGACTAATG CGTTGCCC ACGGTG chr3R:25982843-25982963 77 1.15e-04 CTAGTTGGTC TGATGCCA TCACTATTTG chr3R:25097542-25097662 64 1.15e-04 GTTTTGTACT CGCTGCCC AGGCGGTCAC chr4:796674-796794 45 1.15e-04 gttttcgccg tgatgcca gaccgggctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYTGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11581473-11581593 9.7e-06 53_[+4]_59 chrX:7291308-7291428 9.7e-06 45_[+4]_67 chr3L:692873-692993 9.7e-06 91_[+4]_21 chr3L:5749764-5749884 9.7e-06 3_[+4]_109 chr3L:14671697-14671817 9.7e-06 6_[+4]_106 chr2R:9972767-9972887 9.7e-06 38_[+4]_74 chr4:1084815-1084935 9.7e-06 30_[+4]_82 chr4:835896-836016 9.7e-06 19_[+4]_93 chr2L:22261171-22261291 9.7e-06 32_[+4]_80 chr3L:24231495-24231615 1.7e-05 102_[+4]_10 chrX:19601786-19601906 2.6e-05 2_[+4]_110 chrX:4931150-4931270 2.6e-05 83_[+4]_29 chrX:4936118-4936238 2.6e-05 86_[+4]_26 chr3L:11711400-11711520 4e-05 2_[+4]_110 chrX:1289066-1289186 4e-05 1_[+4]_111 chr3R:9003928-9004048 5e-05 16_[+4]_96 chrX:18385203-18385323 5e-05 47_[+4]_65 chr3R:30946459-30946579 5e-05 47_[+4]_65 chr4:697568-697688 5.9e-05 24_[+4]_88 chr3L:5927675-5927795 5.9e-05 72_[+4]_40 chr3R:22639543-22639663 6.6e-05 43_[+4]_69 chr2L:3303622-3303742 8e-05 100_[+4]_12 chr2R:5967748-5967868 8.9e-05 94_[+4]_18 chr2R:4544666-4544786 8.9e-05 87_[+4]_25 chrX:6759415-6759535 8.9e-05 28_[+4]_84 chr4:979967-980087 9.6e-05 106_[+4]_6 chr3R:25982843-25982963 0.00011 76_[+4]_36 chr3R:25097542-25097662 0.00011 63_[+4]_49 chr4:796674-796794 0.00011 44_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYTGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGYTGCCA width=8 seqs=29 chr3R:11581473-11581593 ( 54) CGTTGCCA 1 chrX:7291308-7291428 ( 46) CGTTGCCA 1 chr3L:692873-692993 ( 92) CGTTGCCA 1 chr3L:5749764-5749884 ( 4) CGTTGCCA 1 chr3L:14671697-14671817 ( 7) CGTTGCCA 1 chr2R:9972767-9972887 ( 39) CGTTGCCA 1 chr4:1084815-1084935 ( 31) CGTTGCCA 1 chr4:835896-836016 ( 20) CGTTGCCA 1 chr2L:22261171-22261291 ( 33) CGTTGCCA 1 chr3L:24231495-24231615 ( 103) CGCTGCCA 1 chrX:19601786-19601906 ( 3) CGATGCCA 1 chrX:4931150-4931270 ( 84) CGATGCCA 1 chrX:4936118-4936238 ( 87) CGATGCCA 1 chr3L:11711400-11711520 ( 3) TGTTGCCA 1 chrX:1289066-1289186 ( 2) TGTTGCCA 1 chr3R:9003928-9004048 ( 17) TGCTGCCA 1 chrX:18385203-18385323 ( 48) TGCTGCCA 1 chr3R:30946459-30946579 ( 48) TGCTGCCA 1 chr4:697568-697688 ( 25) GGTTGCCA 1 chr3L:5927675-5927795 ( 73) GGTTGCCA 1 chr3R:22639543-22639663 ( 44) GGCTGCCA 1 chr2L:3303622-3303742 ( 101) CATTGCCA 1 chr2R:5967748-5967868 ( 95) CACTGCCA 1 chr2R:4544666-4544786 ( 88) CACTGCCA 1 chrX:6759415-6759535 ( 29) CACTGCCA 1 chr4:979967-980087 ( 107) CGTTGCCC 1 chr3R:25982843-25982963 ( 77) TGATGCCA 1 chr3R:25097542-25097662 ( 64) CGCTGCCC 1 chr4:796674-796794 ( 45) TGATGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYTGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 5.5e-001 -1150 165 -99 -29 -107 -1150 207 -1150 -75 58 -1150 81 -1150 -1150 -1150 176 -1150 -1150 228 -1150 -1150 226 -1150 -1150 -1150 226 -1150 -1150 168 -159 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYTGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 5.5e-001 0.000000 0.655172 0.103448 0.241379 0.137931 0.000000 0.862069 0.000000 0.172414 0.310345 0.000000 0.517241 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.931034 0.068966 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYTGCCA MEME-4 regular expression -------------------------------------------------------------------------------- [CT]G[TC]TGCCA -------------------------------------------------------------------------------- Time 25.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGCARC MEME-5 width = 8 sites = 13 llr = 140 E-value = 3.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGCARC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a5: pos.-specific C a1::a::a probability G ::aa::5: matrix T :9:::::: bits 2.3 * *** * 2.1 * *** * 1.8 * **** * 1.6 * **** * Relative 1.4 ****** * Entropy 1.1 ****** * (15.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGGCAAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCARC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11581473-11581593 20 6.75e-06 ATTTAAAACT CTGGCAGC CTTTACAAAA chr2L:11517185-11517305 52 6.75e-06 TTACGAACGG CTGGCAGC GCTGTATATG chrX:16695787-16695907 54 6.75e-06 CTGACACAAG CTGGCAGC TGTAAAATTG chr3L:20495258-20495378 44 6.75e-06 TTTCTTCAGT CTGGCAGC TTTGTTTGAC chr3R:2411911-2412031 60 6.75e-06 atcgACCGGT CTGGCAgc actgcaccgt chrX:5312133-5312253 66 1.63e-05 TCCCAACGAC CTGGCAAC CCTAACACGC chr2L:3303622-3303742 19 1.63e-05 CGTTTACCAT CTGGCAAC TTACACCAAA chr3R:21155987-21156107 23 1.63e-05 ACGGTCCGAT CTGGCAAC GCGTTGTTTT chr3L:3334962-3335082 75 1.63e-05 CGTGGAACAT CTGGCAAC GCTAAGAGGT chr2R:17098557-17098677 26 1.63e-05 AATTAACATT CTGGCAAC TCTTTGCATG chr4:68712-68832 25 1.63e-05 GAGTTGCCAC CTGGCAAC TCCCACATCA chr3L:23015852-23015972 40 1.63e-05 TCGCGACCTT CTGGCAAC TCTACTCGGC chr2L:7065856-7065976 92 2.10e-05 GTTTTCTTTC CCGGCAGC TAGAAAATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCARC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11581473-11581593 6.8e-06 19_[+5]_93 chr2L:11517185-11517305 6.8e-06 51_[+5]_61 chrX:16695787-16695907 6.8e-06 53_[+5]_59 chr3L:20495258-20495378 6.8e-06 43_[+5]_69 chr3R:2411911-2412031 6.8e-06 59_[+5]_53 chrX:5312133-5312253 1.6e-05 65_[+5]_47 chr2L:3303622-3303742 1.6e-05 18_[+5]_94 chr3R:21155987-21156107 1.6e-05 22_[+5]_90 chr3L:3334962-3335082 1.6e-05 74_[+5]_38 chr2R:17098557-17098677 1.6e-05 25_[+5]_87 chr4:68712-68832 1.6e-05 24_[+5]_88 chr3L:23015852-23015972 1.6e-05 39_[+5]_73 chr2L:7065856-7065976 2.1e-05 91_[+5]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCARC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGCARC width=8 seqs=13 chr3R:11581473-11581593 ( 20) CTGGCAGC 1 chr2L:11517185-11517305 ( 52) CTGGCAGC 1 chrX:16695787-16695907 ( 54) CTGGCAGC 1 chr3L:20495258-20495378 ( 44) CTGGCAGC 1 chr3R:2411911-2412031 ( 60) CTGGCAGC 1 chrX:5312133-5312253 ( 66) CTGGCAAC 1 chr2L:3303622-3303742 ( 19) CTGGCAAC 1 chr3R:21155987-21156107 ( 23) CTGGCAAC 1 chr3L:3334962-3335082 ( 75) CTGGCAAC 1 chr2R:17098557-17098677 ( 26) CTGGCAAC 1 chr4:68712-68832 ( 25) CTGGCAAC 1 chr3L:23015852-23015972 ( 40) CTGGCAAC 1 chr2L:7065856-7065976 ( 92) CCGGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCARC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.9669 E= 3.4e+000 -1035 226 -1035 -1035 -1035 -143 -1035 164 -1035 -1035 228 -1035 -1035 -1035 228 -1035 -1035 226 -1035 -1035 178 -1035 -1035 -1035 89 -1035 116 -1035 -1035 226 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCARC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.4e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.538462 0.000000 0.461538 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGCARC MEME-5 regular expression -------------------------------------------------------------------------------- CTGGCA[AG]C -------------------------------------------------------------------------------- Time 31.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:22261171-22261291 8.28e-06 13_[+3(4.61e-05)]_11_[+4(9.70e-06)]_\ 15_[+4(1.65e-05)]_23_[+2(1.64e-05)]_26 chr2L:20104609-20104729 4.15e-02 27_[+1(6.65e-05)]_17_[+1(7.31e-05)]_\ 29_[+1(9.51e-06)]_23 chr3R:3374276-3374396 4.06e-01 120 chrX:4936118-4936238 2.16e-03 86_[+4(2.60e-05)]_2_[+3(4.61e-05)]_\ 16 chr2L:21712-21832 9.60e-03 31_[+2(1.64e-05)]_81 chr4:834989-835109 1.92e-01 120 chrX:11579005-11579125 1.57e-04 7_[+2(1.64e-05)]_55_[+1(9.51e-06)]_\ 42 chr3L:24231495-24231615 9.96e-05 63_[+3(2.71e-05)]_11_[+4(4.95e-05)]_\ 12_[+4(1.65e-05)]_10 chrX:127367-127487 4.61e-02 35_[+3(4.61e-05)]_77 chr2L:18854-18974 5.91e-02 64_[+2(1.64e-05)]_48 chr3L:23279190-23279310 3.03e-03 4_[+3(2.71e-05)]_42_[+2(6.32e-05)]_\ 58 chr3R:2411911-2412031 1.21e-02 59_[+5(6.75e-06)]_53 chr3R:3734103-3734223 3.30e-02 90_[+3(2.71e-05)]_22 chr2R:4595177-4595297 1.99e-01 120 chrX:4931150-4931270 3.35e-04 83_[+4(2.60e-05)]_2_[+3(4.61e-05)]_\ 19 chr3L:2244184-2244304 6.75e-02 51_[+2(1.64e-05)]_61 chr2L:20115967-20116087 1.46e-02 58_[+2(2.33e-05)]_28_[+2(1.64e-05)]_\ 18 chr4:979967-980087 2.42e-04 106_[+4(9.61e-05)]_6 chr2R:1243499-1243619 9.82e-01 120 chr2L:20148490-20148610 3.31e-03 5_[+1(9.51e-06)]_15_[+1(1.62e-05)]_\ 28_[+1(7.31e-05)]_48 chr3L:23015852-23015972 6.14e-04 39_[+5(1.63e-05)]_39_[+3(2.71e-05)]_\ 26 chr2R:2079782-2079902 8.01e-01 120 chr2R:1243718-1243838 4.37e-01 120 chr2R:4729008-4729128 9.89e-01 120 chr4:835896-836016 5.93e-04 19_[+4(9.70e-06)]_93 chr3L:24536063-24536183 1.53e-01 9_[+3(6.54e-05)]_14_[+3(4.61e-05)]_\ 81 chr2L:6566150-6566270 3.14e-01 120 chr2R:5604834-5604954 2.06e-01 120 chr3R:16656236-16656356 1.80e-01 120 chrX:6756299-6756419 6.32e-01 120 chr2R:1514153-1514273 4.15e-01 120 chrX:4956076-4956196 5.60e-01 120 chr3L:23258615-23258735 1.26e-02 59_[+1(5.68e-05)]_53 chr2L:20066282-20066402 1.64e-02 85_[+1(9.51e-06)]_27 chr2R:4188127-4188247 2.18e-01 120 chr2R:4730351-4730471 6.36e-02 61_[+3(2.71e-05)]_1_[+3(6.54e-05)]_\ 42 chr4:721944-722064 9.91e-01 120 chr2R:6494383-6494503 1.22e-03 79_[+2(2.33e-05)]_33 chr3L:27279199-27279319 9.23e-01 120 chr2R:20603306-20603426 8.86e-02 120 chr2L:20638597-20638717 3.89e-02 24_[+2(2.33e-05)]_51_[+2(1.64e-05)]_\ 29 chr3R:21386244-21386364 8.94e-01 120 chr3L:20495258-20495378 5.02e-02 43_[+5(6.75e-06)]_69 chr3R:3118106-3118226 2.31e-01 120 chr2R:4242978-4243098 8.79e-01 120 chr3L:26014163-26014283 1.91e-01 120 chr3L:15816898-15817018 2.12e-01 36_[+3(2.71e-05)]_11_[+3(2.71e-05)]_\ 57 chr2L:18878603-18878723 8.54e-01 120 chr3L:20800300-20800420 2.02e-03 91_[+5(1.63e-05)]_21 chrX:6759415-6759535 2.40e-03 28_[+4(8.92e-05)]_75_[+3(2.71e-05)]_\ 1 chr2R:4013994-4014114 1.90e-01 120 chr2L:23176097-23176217 1.91e-01 120 chr2R:4272493-4272613 1.16e-01 120 chr2L:21221199-21221319 4.68e-04 110_[+1(1.62e-05)]_2 chr3R:4052834-4052954 8.51e-01 120 chr4:1084815-1084935 2.39e-04 30_[+4(9.70e-06)]_19_[+4(3.98e-05)]_\ 16_[+3(6.54e-05)]_1_[+3(2.71e-05)]_22 chr4:796674-796794 5.56e-02 120 chr3R:4397873-4397993 3.99e-02 64_[+1(9.51e-06)]_48 chr3L:27173068-27173188 1.00e+00 120 chr2L:21051964-21052084 6.50e-03 67_[+1(9.51e-06)]_20_[+1(4.31e-05)]_\ 17 chr3L:23580704-23580824 2.05e-03 120 chrX:3173159-3173279 9.87e-01 120 chr3R:21295797-21295917 5.54e-02 1_[+3(2.71e-05)]_111 chr2R:2565410-2565530 6.88e-01 120 chr3R:25097542-25097662 1.72e-03 75_[+1(9.51e-06)]_37 chr4:68712-68832 2.26e-04 24_[+5(1.63e-05)]_88 chr2R:4471023-4471143 4.29e-02 31_[+2(1.64e-05)]_81 chr3R:4081885-4082005 2.61e-01 120 chr2R:9972767-9972887 4.83e-03 38_[+4(9.70e-06)]_74 chr2R:4829155-4829275 4.65e-02 120 chr2R:22912001-22912121 8.83e-01 120 chr3R:20252596-20252716 1.23e-02 64_[+2(8.64e-05)]_48 chr2R:9810755-9810875 5.11e-04 100_[+2(1.64e-05)]_12 chr2L:22169174-22169294 4.54e-01 120 chrX:16695787-16695907 3.01e-03 53_[+5(6.75e-06)]_59 chr3R:28345420-28345540 1.75e-01 120 chr2L:2383095-2383215 3.62e-02 12_[+2(1.64e-05)]_100 chr3R:6708981-6709101 7.41e-01 120 chr3L:14671697-14671817 7.71e-04 6_[+4(9.70e-06)]_58_[+1(9.35e-05)]_\ 40 chr3R:15438143-15438263 9.12e-01 120 chr2R:9291663-9291783 1.90e-01 120 chr3L:23125866-23125986 8.94e-01 120 chrX:14955266-14955386 1.13e-02 19_[+3(2.71e-05)]_93 chr2R:4324886-4325006 4.58e-03 47_[+1(9.51e-06)]_65 chr2R:17098557-17098677 3.53e-02 25_[+5(1.63e-05)]_87 chr3L:15837404-15837524 4.59e-01 120 chr2L:7065856-7065976 2.55e-02 91_[+5(2.10e-05)]_21 chr2R:2846661-2846781 2.79e-01 120 chr3L:1576568-1576688 6.02e-04 102_[+1(1.62e-05)]_10 chr3L:3334962-3335082 3.37e-02 74_[+5(1.63e-05)]_38 chr2R:4782915-4783035 8.87e-02 91_[+5(5.55e-05)]_21 chr2R:20562333-20562453 7.17e-01 120 chr2R:15532243-15532363 7.30e-04 10_[+3(6.54e-05)]_1_[+2(1.64e-05)]_\ 93 chr3R:27151583-27151703 7.24e-01 120 chr2R:12140524-12140644 4.47e-01 120 chr2R:10075590-10075710 2.19e-03 59_[+5(8.80e-05)]_1_[+2(1.64e-05)]_\ 44 chr2R:5652829-5652949 7.43e-02 120 chr3L:24028363-24028483 3.05e-01 120 chr3L:4021359-4021479 9.27e-02 120 chr3R:23820494-23820614 7.09e-03 93_[+1(9.51e-06)]_19 chr2L:19181700-19181820 5.54e-02 4_[+2(1.64e-05)]_108 chr2R:9578965-9579085 1.38e-01 120 chrX:2419660-2419780 6.01e-01 120 chr2R:17581494-17581614 2.84e-03 94_[+1(9.51e-06)]_18 chr2L:20647443-20647563 1.54e-02 109_[+2(4.69e-05)]_3 chr2R:1527049-1527169 8.34e-01 120 chrX:1289066-1289186 1.23e-04 1_[+4(3.98e-05)]_50_[+1(2.94e-05)]_\ 53 chr3R:26945371-26945491 6.45e-03 61_[+1(9.51e-06)]_51 chr2R:4012748-4012868 1.07e-01 79_[+3(2.71e-05)]_33 chr3R:20621861-20621981 2.13e-02 94_[+1(9.51e-06)]_18 chr3L:24976112-24976232 2.32e-01 120 chr2L:20223111-20223231 9.17e-01 120 chr4:1181946-1182066 5.85e-01 120 chr2R:11451847-11451967 3.75e-02 120 chrX:18137047-18137167 5.37e-02 112_[+1(9.51e-06)] chr4:936440-936560 3.40e-02 47_[+2(2.33e-05)]_65 chr3R:13683057-13683177 2.60e-01 120 chr2L:17603321-17603441 1.66e-01 120 chr3R:22639543-22639663 1.04e-03 43_[+4(6.59e-05)]_25_[+4(9.70e-06)]_\ 36 chr2L:10517256-10517376 2.58e-02 120 chr3R:31985735-31985855 3.38e-01 120 chrX:17305692-17305812 7.29e-03 59_[+5(1.63e-05)]_53 chr3L:5927675-5927795 7.29e-02 72_[+4(5.91e-05)]_40 chr4:1146561-1146681 2.76e-01 120 chr3L:25115931-25116051 5.15e-02 64_[+1(4.31e-05)]_48 chr3L:25120560-25120680 2.87e-01 120 chr3R:9006359-9006479 5.04e-02 75_[+2(1.64e-05)]_37 chr3R:24360136-24360256 8.16e-01 120 chrX:6756503-6756623 2.72e-01 120 chr2R:25253149-25253269 9.93e-01 120 chr3R:9543582-9543702 6.74e-01 120 chrX:19762329-19762449 1.82e-01 120 chrX:18515312-18515432 1.32e-02 120 chrX:1772689-1772809 8.84e-01 120 chrX:796773-796893 1.68e-01 120 chr2L:6527110-6527230 7.09e-01 120 chr3R:6780203-6780323 8.60e-01 120 chr3L:3224860-3224980 2.78e-01 120 chr3R:30946459-30946579 6.09e-03 16_[+4(4.95e-05)]_23_[+4(4.95e-05)]_\ 65 chr2L:21397384-21397504 6.06e-01 120 chr4:697568-697688 1.94e-03 24_[+4(5.91e-05)]_88 chrX:5332415-5332535 6.08e-01 120 chr3L:5749764-5749884 7.11e-05 3_[+4(9.70e-06)]_54_[+2(4.69e-05)]_\ 47 chr3R:21155987-21156107 4.84e-04 22_[+5(1.63e-05)]_14_[+2(1.64e-05)]_\ 68 chr2L:17784774-17784894 2.37e-01 120 chrX:758936-759056 8.97e-02 120 chr3R:20908801-20908921 7.42e-01 120 chr2L:9330647-9330767 1.03e-01 23_[+1(6.65e-05)]_89 chr3L:23714886-23715006 8.09e-01 120 chr3L:6550225-6550345 4.55e-01 120 chr2L:11517185-11517305 6.08e-03 51_[+5(6.75e-06)]_61 chr3L:607058-607178 7.03e-01 120 chr3L:28012651-28012771 9.46e-01 120 chr2R:7387212-7387332 1.36e-01 120 chr3R:12422690-12422810 1.56e-02 30_[+2(8.64e-05)]_82 chr3R:16260493-16260613 6.08e-02 2_[+2(4.69e-05)]_110 chrX:17077905-17078025 9.18e-01 120 chr3L:2237247-2237367 1.84e-01 120 chr2R:4544666-4544786 8.43e-04 87_[+4(8.92e-05)]_2_[+1(2.94e-05)]_\ 15 chr2L:19185960-19186080 3.51e-02 120 chrX:7678990-7679110 7.95e-01 120 chr2R:5293914-5294034 8.03e-01 120 chr3R:19011115-19011235 4.87e-01 120 chrX:7722026-7722146 9.07e-04 [+2(2.33e-05)]_42_[+3(6.54e-05)]_62 chr3R:30563110-30563230 1.70e-02 66_[+1(1.62e-05)]_46 chr3R:21822675-21822795 5.56e-01 120 chr3L:692873-692993 2.21e-05 10_[+2(1.64e-05)]_51_[+1(6.65e-05)]_\ 14_[+4(9.70e-06)]_21 chrX:18385203-18385323 8.25e-04 7_[+2(1.64e-05)]_32_[+4(4.95e-05)]_\ 65 chr3R:5393828-5393948 8.72e-01 120 chrX:4956281-4956401 1.72e-01 120 chr2L:9711273-9711393 8.20e-01 120 chr3R:13309273-13309393 6.92e-02 108_[+1(5.68e-05)]_4 chr3R:11679660-11679780 1.52e-01 120 chr3R:25982843-25982963 1.19e-04 44_[+1(9.35e-05)]_55_[+3(2.71e-05)]_\ 5 chr3R:4197129-4197249 7.88e-02 61_[+3(2.71e-05)]_51 chr3R:5438927-5439047 8.12e-01 120 chr3R:6170862-6170982 3.90e-01 120 chr3R:31458186-31458306 9.75e-01 120 chr3L:21533684-21533804 5.80e-02 3_[+2(1.64e-05)]_109 chr2L:16679969-16680089 2.42e-01 36_[+3(4.61e-05)]_76 chrX:8094007-8094127 4.03e-02 20_[+2(1.64e-05)]_12_[+2(1.64e-05)]_\ 72 chrX:9089413-9089533 6.04e-03 77_[+3(2.71e-05)]_35 chr4:1060878-1060998 9.55e-02 4_[+2(1.64e-05)]_108 chrX:9250316-9250436 2.54e-04 12_[+1(9.51e-06)]_26_[+2(1.64e-05)]_\ 66 chr3R:12712581-12712701 1.59e-01 56_[+1(9.35e-05)]_9_[+1(4.31e-05)]_\ 39 chrX:20165943-20166063 1.06e-01 120 chr2R:5697706-5697826 6.13e-01 120 chr2L:7890842-7890962 4.84e-01 120 chr3R:16957883-16958003 2.41e-01 120 chr2R:5090484-5090604 1.73e-01 120 chrX:19601786-19601906 1.02e-03 2_[+4(2.60e-05)]_36_[+3(2.71e-05)]_\ 66 chr3L:11711400-11711520 1.69e-03 2_[+4(3.98e-05)]_85_[+2(6.32e-05)]_\ 17 chr2L:12546646-12546766 9.10e-03 27_[+1(9.51e-06)]_85 chr3R:5217436-5217556 7.73e-03 1_[+2(1.64e-05)]_111 chrX:4939106-4939226 9.05e-01 120 chr2R:5981804-5981924 4.08e-02 70_[+1(9.51e-06)]_42 chr2L:17384642-17384762 1.58e-02 120 chr3R:6646807-6646927 7.74e-03 96_[+1(9.51e-06)]_16 chrX:21035355-21035475 2.64e-02 120 chr2R:4243182-4243302 4.02e-03 14_[+1(4.31e-05)]_98 chr2R:21522172-21522292 1.13e-01 120 chr2L:18944228-18944348 6.25e-01 120 chr2R:19141519-19141639 4.31e-03 3_[+2(2.33e-05)]_101_[+1(7.31e-05)] chr2L:3303622-3303742 6.12e-06 18_[+5(1.63e-05)]_40_[+3(6.54e-05)]_\ 26_[+4(7.96e-05)]_12 chr2R:5967748-5967868 1.01e-02 47_[+3(6.54e-05)]_39_[+4(8.92e-05)]_\ 18 chr3R:6350784-6350904 5.65e-02 53_[+3(4.61e-05)]_43_[+3(2.71e-05)]_\ 8 chr2L:8083253-8083373 5.10e-01 120 chr3R:26056509-26056629 3.14e-01 120 chr3R:11806929-11807049 2.56e-01 120 chr2L:8543280-8543400 2.59e-01 120 chr3R:21408533-21408653 2.50e-01 120 chr2R:6464951-6465071 5.77e-01 120 chr2R:17412667-17412787 3.69e-04 79_[+3(2.71e-05)]_33 chr2L:12172923-12173043 7.19e-02 74_[+1(9.51e-06)]_38 chrX:10786877-10786997 8.93e-02 82_[+3(2.71e-05)]_30 chrX:23013298-23013418 4.52e-03 2_[+1(1.62e-05)]_110 chr2L:6467666-6467786 8.66e-02 81_[+2(4.69e-05)]_31 chr4:1053792-1053912 6.88e-01 120 chrX:1215133-1215253 1.96e-03 81_[+3(2.71e-05)]_31 chrX:15591744-15591864 1.21e-01 25_[+2(8.64e-05)]_87 chr2L:22239817-22239937 5.19e-01 120 chr3L:9968361-9968481 2.66e-01 120 chr2L:12520426-12520546 3.27e-01 120 chr3L:3811181-3811301 1.65e-03 79_[+1(9.51e-06)]_33 chr3L:18618272-18618392 1.27e-01 120 chrX:1399802-1399922 6.90e-02 120 chr2R:12518978-12519098 9.33e-01 120 chr2R:1264204-1264324 3.29e-01 120 chrX:16096642-16096762 5.23e-01 120 chr3R:19094905-19095025 9.55e-02 120 chr3L:11107550-11107670 9.52e-01 120 chr3L:11681886-11682006 6.29e-02 120 chr3L:20497343-20497463 7.76e-01 120 chrX:7291308-7291428 4.60e-05 45_[+4(9.70e-06)]_36_[+1(9.51e-06)]_\ 23 chr2R:1345104-1345224 5.65e-01 120 chr2L:12093725-12093845 4.12e-02 49_[+1(9.35e-05)]_63 chr4:210157-210277 8.85e-04 92_[+3(2.71e-05)]_10_[+2(1.64e-05)]_\ 2 chr2L:143235-143355 1.34e-02 120 chr2L:21262895-21263015 1.86e-02 67_[+1(9.51e-06)]_45 chrX:16448547-16448667 8.39e-03 101_[+1(4.31e-05)]_11 chr3R:9003928-9004048 1.33e-04 16_[+4(4.95e-05)]_33_[+4(3.98e-05)]_\ 23_[+3(2.71e-05)]_24 chr2R:18421172-18421292 2.44e-01 120 chr3R:11581473-11581593 3.38e-06 19_[+5(6.75e-06)]_26_[+4(9.70e-06)]_\ 21_[+3(2.71e-05)]_30 chr2L:8478107-8478227 1.27e-01 120 chr2R:21685170-21685290 1.37e-01 120 chr2R:25183114-25183234 6.99e-01 120 chr3L:16842389-16842509 1.79e-01 120 chrX:5312133-5312253 5.87e-03 65_[+5(1.63e-05)]_47 chr3R:27559128-27559248 6.52e-05 8_[+2(1.64e-05)]_56_[+1(9.51e-06)]_\ 40 chrX:10367792-10367912 5.14e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************