******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG33017.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:14614560-14614680 1.0000 120 chr2L:10694313-10694433 1.0000 120 chr3R:18315001-18315121 1.0000 120 chr3R:30101638-30101758 1.0000 120 chr3L:14556925-14557045 1.0000 120 chr2R:9130039-9130159 1.0000 120 chr3L:17917710-17917830 1.0000 120 chr2L:4930678-4930798 1.0000 120 chr2L:8033884-8034004 1.0000 120 chr3L:11593941-11594061 1.0000 120 chr2R:6173441-6173561 1.0000 120 chr2L:8340457-8340577 1.0000 120 chr3R:29756213-29756333 1.0000 120 chr3L:15634796-15634916 1.0000 120 chr3R:18275516-18275636 1.0000 120 chr3R:18546283-18546403 1.0000 120 chr3L:11272784-11272904 1.0000 120 chr2L:8131002-8131122 1.0000 120 chr2L:8326601-8326721 1.0000 120 chr3R:17536913-17537033 1.0000 120 chr2R:13293840-13293960 1.0000 120 chr3L:556793-556913 1.0000 120 chr3L:9361972-9362092 1.0000 120 chr2L:8203908-8204028 1.0000 120 chr2L:13156463-13156583 1.0000 120 chr2R:12185542-12185662 1.0000 120 chr2R:11688717-11688837 1.0000 120 chr3R:31250560-31250680 1.0000 120 chr2L:12448340-12448460 1.0000 120 chr3R:10075528-10075648 1.0000 120 chr2L:18713880-18714000 1.0000 120 chr2R:24954728-24954848 1.0000 120 chr2L:5007447-5007567 1.0000 120 chr3L:16002105-16002225 1.0000 120 chr2L:2772077-2772197 1.0000 120 chrX:13735021-13735141 1.0000 120 chrX:12031554-12031674 1.0000 120 chr2R:10763108-10763228 1.0000 120 chrX:12913784-12913904 1.0000 120 chr3L:12078679-12078799 1.0000 120 chr2L:9453638-9453758 1.0000 120 chr2R:10333098-10333218 1.0000 120 chr3R:9528023-9528143 1.0000 120 chr3R:31306537-31306657 1.0000 120 chr2R:9184577-9184697 1.0000 120 chr4:922762-922882 1.0000 120 chr3R:25762541-25762661 1.0000 120 chr2R:7681978-7682098 1.0000 120 chr2R:13537322-13537442 1.0000 120 chr2L:17427307-17427427 1.0000 120 chr3L:5638793-5638913 1.0000 120 chr3R:5280532-5280652 1.0000 120 chr3R:7076729-7076849 1.0000 120 chr2L:1101834-1101954 1.0000 120 chr2L:20887492-20887612 1.0000 120 chr2L:16629324-16629444 1.0000 120 chr3L:9095811-9095931 1.0000 120 chr3R:24865061-24865181 1.0000 120 chr2L:18985873-18985993 1.0000 120 chr3R:21960122-21960242 1.0000 120 chr3L:4116615-4116735 1.0000 120 chr2L:5434385-5434505 1.0000 120 chr3L:16682553-16682673 1.0000 120 chr2L:14336602-14336722 1.0000 120 chr3L:3940699-3940819 1.0000 120 chr2R:19029813-19029933 1.0000 120 chr2L:1730980-1731100 1.0000 120 chr2R:22227588-22227708 1.0000 120 chr2L:15055876-15055996 1.0000 120 chr3R:19212702-19212822 1.0000 120 chrX:11819362-11819482 1.0000 120 chr3L:20353845-20353965 1.0000 120 chr2R:21647285-21647405 1.0000 120 chr2R:7243376-7243496 1.0000 120 chr3R:18902991-18903111 1.0000 120 chr3R:19132317-19132437 1.0000 120 chr3R:12674147-12674267 1.0000 120 chr3L:8985288-8985408 1.0000 120 chr2R:16179945-16180065 1.0000 120 chrX:17625917-17626037 1.0000 120 chr3R:14217992-14218112 1.0000 120 chr3R:10083240-10083360 1.0000 120 chr2L:13808129-13808249 1.0000 120 chr2R:17490784-17490904 1.0000 120 chr2R:7958110-7958230 1.0000 120 chr2L:12022834-12022954 1.0000 120 chr3L:4293883-4294003 1.0000 120 chr3L:21501966-21502086 1.0000 120 chrX:8511089-8511209 1.0000 120 chr2L:2216215-2216335 1.0000 120 chr3L:16359365-16359485 1.0000 120 chr2L:8255498-8255618 1.0000 120 chr3R:12676464-12676584 1.0000 120 chr3R:15898416-15898536 1.0000 120 chr3R:24278927-24279047 1.0000 120 chr3L:7752910-7753030 1.0000 120 chr2L:7726362-7726482 1.0000 120 chr3R:15366991-15367111 1.0000 120 chr3R:21195706-21195826 1.0000 120 chr2R:14881310-14881430 1.0000 120 chr3L:9059982-9060102 1.0000 120 chr2L:20674908-20675028 1.0000 120 chr3R:23938832-23938952 1.0000 120 chr2R:23683086-23683206 1.0000 120 chr2L:13844049-13844169 1.0000 120 chr2R:17097864-17097984 1.0000 120 chr2L:6615119-6615239 1.0000 120 chr3L:18033908-18034028 1.0000 120 chr2R:21084201-21084321 1.0000 120 chr3R:8318062-8318182 1.0000 120 chr2L:8941875-8941995 1.0000 120 chr2L:11841626-11841746 1.0000 120 chr2R:10553555-10553675 1.0000 120 chr3R:10679295-10679415 1.0000 120 chr2L:12521777-12521897 1.0000 120 chr3R:7945025-7945145 1.0000 120 chr2R:6993979-6994099 1.0000 120 chr3L:11599506-11599626 1.0000 120 chr3L:11220554-11220674 1.0000 120 chr2R:20314787-20314907 1.0000 120 chr3L:12275739-12275859 1.0000 120 chr3R:14779786-14779906 1.0000 120 chr3R:17774684-17774804 1.0000 120 chr3L:13994490-13994610 1.0000 120 chr2L:8094094-8094214 1.0000 120 chr3R:23534753-23534873 1.0000 120 chr3L:7833485-7833605 1.0000 120 chrX:12765853-12765973 1.0000 120 chr3R:22003748-22003868 1.0000 120 chr2L:843973-844093 1.0000 120 chrX:14909181-14909301 1.0000 120 chr3R:9951178-9951298 1.0000 120 chr2L:1135622-1135742 1.0000 120 chr3L:2426583-2426703 1.0000 120 chr2L:8325570-8325690 1.0000 120 chr2L:19433454-19433574 1.0000 120 chr3R:19135103-19135223 1.0000 120 chr2L:9735495-9735615 1.0000 120 chr3R:7522611-7522731 1.0000 120 chr2R:20534369-20534489 1.0000 120 chr3R:19858147-19858267 1.0000 120 chr3R:25268422-25268542 1.0000 120 chr3L:5247222-5247342 1.0000 120 chr4:1064440-1064560 1.0000 120 chr3L:17814170-17814290 1.0000 120 chr2R:17484813-17484933 1.0000 120 chr3R:17400230-17400350 1.0000 120 chr2L:2584657-2584777 1.0000 120 chr2L:5302506-5302626 1.0000 120 chr3R:4685578-4685698 1.0000 120 chr2L:2212637-2212757 1.0000 120 chr2L:8233799-8233919 1.0000 120 chrX:11378501-11378621 1.0000 120 chrX:13779890-13780010 1.0000 120 chr2L:17558205-17558325 1.0000 120 chr3L:18836846-18836966 1.0000 120 chr2L:10972387-10972507 1.0000 120 chrX:6528646-6528766 1.0000 120 chr2L:1124379-1124499 1.0000 120 chr3L:12861389-12861509 1.0000 120 chr2L:5946837-5946957 1.0000 120 chr2L:7952002-7952122 1.0000 120 chr2L:18153202-18153322 1.0000 120 chr3R:4706161-4706281 1.0000 120 chr3L:10504785-10504905 1.0000 120 chr2R:10136175-10136295 1.0000 120 chr3L:1337012-1337132 1.0000 120 chr3R:13032555-13032675 1.0000 120 chr3L:17603629-17603749 1.0000 120 chr3R:23013535-23013655 1.0000 120 chr2R:14882081-14882201 1.0000 120 chr3L:8979090-8979210 1.0000 120 chr2L:16721406-16721526 1.0000 120 chr2R:6707313-6707433 1.0000 120 chr2L:18625135-18625255 1.0000 120 chr3R:8712820-8712940 1.0000 120 chr2L:10514698-10514818 1.0000 120 chr3R:4654973-4655093 1.0000 120 chr3L:15996902-15997022 1.0000 120 chr2L:16672395-16672515 1.0000 120 chr2L:19415960-19416080 1.0000 120 chr3L:8787977-8788097 1.0000 120 chr3R:20311135-20311255 1.0000 120 chrX:16285335-16285455 1.0000 120 chr3R:11173223-11173343 1.0000 120 chr2R:16219749-16219869 1.0000 120 chr3R:23164302-23164422 1.0000 120 chr3R:8823150-8823270 1.0000 120 chr3R:14711592-14711712 1.0000 120 chr2L:5209859-5209979 1.0000 120 chr3L:14381647-14381767 1.0000 120 chrX:17588239-17588359 1.0000 120 chr3R:29717637-29717757 1.0000 120 chr2R:12666152-12666272 1.0000 120 chrX:3447817-3447937 1.0000 120 chr3L:17000451-17000571 1.0000 120 chrX:2108697-2108817 1.0000 120 chr2L:8426405-8426525 1.0000 120 chr3R:5694552-5694672 1.0000 120 chr3R:7217309-7217429 1.0000 120 chr2L:2944627-2944747 1.0000 120 chr2R:9137321-9137441 1.0000 120 chr2R:10799782-10799902 1.0000 120 chr3R:11969332-11969452 1.0000 120 chr3R:18914844-18914964 1.0000 120 chr2L:1732432-1732552 1.0000 120 chr3L:4663939-4664059 1.0000 120 chr3L:11689874-11689994 1.0000 120 chr2R:9239979-9240099 1.0000 120 chr3L:8094669-8094789 1.0000 120 chr3R:5647972-5648092 1.0000 120 chr2R:23617705-23617825 1.0000 120 chr3R:26801538-26801658 1.0000 120 chr2R:13937506-13937626 1.0000 120 chr3R:9075044-9075164 1.0000 120 chr3L:9092843-9092963 1.0000 120 chr3R:26248245-26248365 1.0000 120 chr2L:8088019-8088139 1.0000 120 chr3L:11656346-11656466 1.0000 120 chrX:9466289-9466409 1.0000 120 chr2L:5095409-5095529 1.0000 120 chr3R:24566961-24567081 1.0000 120 chr3R:14568944-14569064 1.0000 120 chr2L:4417008-4417128 1.0000 120 chr3L:16885197-16885317 1.0000 120 chr2L:18632490-18632610 1.0000 120 chr2R:7793130-7793250 1.0000 120 chr3R:14020595-14020715 1.0000 120 chr2R:10272884-10273004 1.0000 120 chrX:13840193-13840313 1.0000 120 chrX:7086753-7086873 1.0000 120 chr2R:19455637-19455757 1.0000 120 chr3R:21157310-21157430 1.0000 120 chr3L:10897712-10897832 1.0000 120 chr2R:22789408-22789528 1.0000 120 chr2L:5303026-5303146 1.0000 120 chr3R:23386192-23386312 1.0000 120 chr3L:21972513-21972633 1.0000 120 chr3R:13714268-13714388 1.0000 120 chr2R:6693160-6693280 1.0000 120 chr2R:19461572-19461692 1.0000 120 chr3L:11623600-11623720 1.0000 120 chr3L:8580834-8580954 1.0000 120 chr3R:21276222-21276342 1.0000 120 chr3R:25280057-25280177 1.0000 120 chrX:3265954-3266074 1.0000 120 chr3L:2800424-2800544 1.0000 120 chr2R:12186270-12186390 1.0000 120 chr2R:21649099-21649219 1.0000 120 chr2L:3059296-3059416 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG33017/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG33017.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.334 C 0.165 G 0.165 T 0.335 Background letter frequencies (from file dataset with add-one prior applied): A 0.334 C 0.165 G 0.165 T 0.335 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SSSCKGCN MEME-1 width = 8 sites = 36 llr = 307 E-value = 2.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSSCKGCN MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C 5568:3a2 probability G 554257:3 matrix T ::::5::2 bits 2.6 * 2.3 * 2.1 * 1.8 * ** Relative 1.6 **** ** Entropy 1.3 **** ** (12.3 bits) 1.0 ******* 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel GCCCGGCG consensus CGGGTC A sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCKGCN MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18033908-18034028 68 2.20e-06 CCCTCTCTCT CGCCGGCg tgtgtgtgtg chr2R:16179945-16180065 108 2.20e-06 TGCATTTGCT CGCCGGCG CGTGT chr3R:18914844-18914964 57 5.49e-06 ATTATATCAA CCCCGGCC AGCGGCTGCC chr3R:23164302-23164422 63 5.49e-06 AGGAGTCATG CGCCGGCC Aagatccaga chr3R:19135103-19135223 14 9.92e-06 GGCAAAGCTC GCGCGGCC TTAGGATTTA chr2R:20314787-20314907 19 1.88e-05 ACTGCCACGC CCCCTGCG CCCACCATAC chr2L:20674908-20675028 95 1.88e-05 ACCTTTCTTC CGCCTGCG GTAGTTGTGG chr2R:6707313-6707433 104 2.10e-05 GAGCGTGAGG GGCGGGCG ATAGCGATT chr3R:7076729-7076849 61 2.10e-05 GCGTCATTGT GCCGGGCG TCACATCCGC chr2L:10972387-10972507 94 2.77e-05 AGTTGAGTGG GCCCTGCC GCAACCTTGT chr2R:7793130-7793250 100 3.21e-05 TAGGAGAATG GCGCTGCG ATGGCGGGGG chr3R:23013535-23013655 8 3.21e-05 ATGCACA GCCCGCCC TAAAACTAAT chr3R:10083240-10083360 58 3.21e-05 ATTTTCTGCT GGGCTGCG CGTTGGCATT chr2L:3059296-3059416 55 4.43e-05 AGCTCCGACT GCGCGGCA TCACCTGATT chrX:13840193-13840313 80 4.43e-05 CTAGCAAACA CGGCTGCG GCACAAAGCT chr2L:1124379-1124499 15 4.43e-05 CGAAAACACA GGGCGGCA CATTGAACAC chr2R:21084201-21084321 27 4.43e-05 TCGCCTTGTC CCCCGCCC GAAGATCGCT chr3L:11220554-11220674 105 5.43e-05 ATTGCAAATG CGGCGGCT CATAAAAA chr2R:9137321-9137441 74 5.87e-05 GAGAAAGCTT GGCCTCCG CCGCCTCCTC chr2R:24954728-24954848 36 7.00e-05 ATCGAACGCT GGCCTGCA AAACGAAAGA chr3R:8712820-8712940 98 8.11e-05 TCCCCTTTAG CGGCGCCC CTGCTGATAA chr3R:24278927-24279047 42 8.11e-05 TAATGCACTT GCCCGCCA GAGGAACATT chr3L:12078679-12078799 65 8.11e-05 TTGCCTATCT GGCCGCCT ACTTACAGGC chrX:13735021-13735141 26 8.11e-05 GAAATATAAT GGCCGCCT TAAGTTGTTT chr2L:10514698-10514818 35 1.06e-04 TCGCTTTGCA CCCGTGCG TACTTTGCAC chr3R:13032555-13032675 21 1.06e-04 TTTTTTAATC GGCGGGCA CATGAGGTTG chr3L:556793-556913 99 1.06e-04 TGCTTTATAG GCCGGGCT TATCTATAAG chr2L:17427307-17427427 47 1.09e-04 GTCTAGTGAA CCCGGCCG TATTCCCGTT chr3L:8580834-8580954 5 1.27e-04 GTCT GCGCTGCT CTGATTGCCA chr3R:9951178-9951298 17 1.27e-04 TGGCTGATCG GGGCTGCA AGGGGTGCCA chrX:3265954-3266074 15 1.49e-04 TCATTTTCTT CGGCTGCT CTCCAAATAA chr2R:13293840-13293960 100 1.49e-04 TACTCATTAG CCGCTGCA TTTGGCTCAC chr3L:1337012-1337132 26 2.07e-04 TGGAGAACCT GGCGTGCT ACTGGGTTCC chr2L:8094094-8094214 22 2.07e-04 ccacccccaa cccctcca TTTCGCACTT chr3R:23938832-23938952 25 2.07e-04 AACCATAAAA CCCCTCCT TGGCTCTTAT chr3L:5638793-5638913 53 2.07e-04 CGAAAAGGGG CCGGTGCC CCTTCGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCKGCN MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18033908-18034028 2.2e-06 67_[+1]_45 chr2R:16179945-16180065 2.2e-06 107_[+1]_5 chr3R:18914844-18914964 5.5e-06 56_[+1]_56 chr3R:23164302-23164422 5.5e-06 62_[+1]_50 chr3R:19135103-19135223 9.9e-06 13_[+1]_99 chr2R:20314787-20314907 1.9e-05 18_[+1]_94 chr2L:20674908-20675028 1.9e-05 94_[+1]_18 chr2R:6707313-6707433 2.1e-05 103_[+1]_9 chr3R:7076729-7076849 2.1e-05 60_[+1]_52 chr2L:10972387-10972507 2.8e-05 93_[+1]_19 chr2R:7793130-7793250 3.2e-05 99_[+1]_13 chr3R:23013535-23013655 3.2e-05 7_[+1]_105 chr3R:10083240-10083360 3.2e-05 57_[+1]_55 chr2L:3059296-3059416 4.4e-05 54_[+1]_58 chrX:13840193-13840313 4.4e-05 79_[+1]_33 chr2L:1124379-1124499 4.4e-05 14_[+1]_98 chr2R:21084201-21084321 4.4e-05 26_[+1]_86 chr3L:11220554-11220674 5.4e-05 104_[+1]_8 chr2R:9137321-9137441 5.9e-05 73_[+1]_39 chr2R:24954728-24954848 7e-05 35_[+1]_77 chr3R:8712820-8712940 8.1e-05 97_[+1]_15 chr3R:24278927-24279047 8.1e-05 41_[+1]_71 chr3L:12078679-12078799 8.1e-05 64_[+1]_48 chrX:13735021-13735141 8.1e-05 25_[+1]_87 chr2L:10514698-10514818 0.00011 34_[+1]_78 chr3R:13032555-13032675 0.00011 20_[+1]_92 chr3L:556793-556913 0.00011 98_[+1]_14 chr2L:17427307-17427427 0.00011 46_[+1]_66 chr3L:8580834-8580954 0.00013 4_[+1]_108 chr3R:9951178-9951298 0.00013 16_[+1]_96 chrX:3265954-3266074 0.00015 14_[+1]_98 chr2R:13293840-13293960 0.00015 99_[+1]_13 chr3L:1337012-1337132 0.00021 25_[+1]_87 chr2L:8094094-8094214 0.00021 21_[+1]_91 chr3R:23938832-23938952 0.00021 24_[+1]_88 chr3L:5638793-5638913 0.00021 52_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCKGCN MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSSCKGCN width=8 seqs=36 chr3L:18033908-18034028 ( 68) CGCCGGCG 1 chr2R:16179945-16180065 ( 108) CGCCGGCG 1 chr3R:18914844-18914964 ( 57) CCCCGGCC 1 chr3R:23164302-23164422 ( 63) CGCCGGCC 1 chr3R:19135103-19135223 ( 14) GCGCGGCC 1 chr2R:20314787-20314907 ( 19) CCCCTGCG 1 chr2L:20674908-20675028 ( 95) CGCCTGCG 1 chr2R:6707313-6707433 ( 104) GGCGGGCG 1 chr3R:7076729-7076849 ( 61) GCCGGGCG 1 chr2L:10972387-10972507 ( 94) GCCCTGCC 1 chr2R:7793130-7793250 ( 100) GCGCTGCG 1 chr3R:23013535-23013655 ( 8) GCCCGCCC 1 chr3R:10083240-10083360 ( 58) GGGCTGCG 1 chr2L:3059296-3059416 ( 55) GCGCGGCA 1 chrX:13840193-13840313 ( 80) CGGCTGCG 1 chr2L:1124379-1124499 ( 15) GGGCGGCA 1 chr2R:21084201-21084321 ( 27) CCCCGCCC 1 chr3L:11220554-11220674 ( 105) CGGCGGCT 1 chr2R:9137321-9137441 ( 74) GGCCTCCG 1 chr2R:24954728-24954848 ( 36) GGCCTGCA 1 chr3R:8712820-8712940 ( 98) CGGCGCCC 1 chr3R:24278927-24279047 ( 42) GCCCGCCA 1 chr3L:12078679-12078799 ( 65) GGCCGCCT 1 chrX:13735021-13735141 ( 26) GGCCGCCT 1 chr2L:10514698-10514818 ( 35) CCCGTGCG 1 chr3R:13032555-13032675 ( 21) GGCGGGCA 1 chr3L:556793-556913 ( 99) GCCGGGCT 1 chr2L:17427307-17427427 ( 47) CCCGGCCG 1 chr3L:8580834-8580954 ( 5) GCGCTGCT 1 chr3R:9951178-9951298 ( 17) GGGCTGCA 1 chrX:3265954-3266074 ( 15) CGGCTGCT 1 chr2R:13293840-13293960 ( 100) CCGCTGCA 1 chr3L:1337012-1337132 ( 26) GGCGTGCT 1 chr2L:8094094-8094214 ( 22) CCCCTCCA 1 chr3R:23938832-23938952 ( 25) CCCCTCCT 1 chr3L:5638793-5638913 ( 53) CCGGTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCKGCN MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 2.7e+000 -1181 151 168 -1181 -1181 160 160 -1181 -1181 195 113 -1181 -1181 223 43 -1181 -1181 -1181 168 49 -1181 75 213 -1181 -1181 260 -1181 -1181 -59 43 101 -59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCKGCN MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.7e+000 0.000000 0.472222 0.527778 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.638889 0.361111 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.000000 0.527778 0.472222 0.000000 0.277778 0.722222 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.222222 0.333333 0.222222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCKGCN MEME-1 regular expression -------------------------------------------------------------------------------- [GC][CG][CG][CG][GT][GC]C[GACT] -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACYCWC MEME-2 width = 8 sites = 13 llr = 130 E-value = 5.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACYCWC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :27:::3: pos.-specific C a8:a6a2a probability G :::::::: matrix T ::3:4:5: bits 2.6 * * * * 2.3 * * * * 2.1 * * * * 1.8 ** * * * Relative 1.6 ** * * * Entropy 1.3 ** *** * (14.4 bits) 1.0 ** *** * 0.8 ****** * 0.5 ****** * 0.3 ******** 0.0 -------- Multilevel CCACCCTC consensus T T A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYCWC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9137321-9137441 94 1.11e-06 GCCTCCTCCT CCACCCCC CGCAGCTCCC chr2L:8094094-8094214 12 1.11e-06 atcaccatca ccaccccc aacccctcca chr3L:16002105-16002225 19 3.37e-06 TCAGTCGGCC CCACCCTC CTATTTTTTT chr2R:22227588-22227708 49 5.62e-06 agcacccaca ccacccac accaTCCCTT chr3L:18033908-18034028 55 9.00e-06 TTACTTTTTG CCTCCCTC TCTCTCGCCG chr2L:7726362-7726482 80 9.00e-06 TCATTTGAAA CCTCCCTC TAATTTCAAA chr3R:24566961-24567081 17 2.27e-05 GCAGTTTTCC CCACTCAC CGTCTGTCTC chr3R:8823150-8823270 110 2.27e-05 ATTTGACTCA CCACTCAC AGA chr2L:20674908-20675028 79 2.27e-05 GATCAATAAA CCACTCAC CTTTCTTCCG chrX:13840193-13840313 3 2.49e-05 CA CCTCTCCC GATCCCAGCG chr2R:16179945-16180065 68 2.95e-05 TTTCCTTTTT CCTCTCTC TTTTTGCACT chr2L:1732432-1732552 42 4.09e-05 AATGCATTTT CAACCCTC TTCAAGCAAT chr3L:16682553-16682673 40 4.09e-05 TATTAGCCCT CAACCCTC ATATAACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYCWC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9137321-9137441 1.1e-06 93_[+2]_19 chr2L:8094094-8094214 1.1e-06 11_[+2]_101 chr3L:16002105-16002225 3.4e-06 18_[+2]_94 chr2R:22227588-22227708 5.6e-06 48_[+2]_64 chr3L:18033908-18034028 9e-06 54_[+2]_58 chr2L:7726362-7726482 9e-06 79_[+2]_33 chr3R:24566961-24567081 2.3e-05 16_[+2]_96 chr3R:8823150-8823270 2.3e-05 109_[+2]_3 chr2L:20674908-20675028 2.3e-05 78_[+2]_34 chrX:13840193-13840313 2.5e-05 2_[+2]_110 chr2R:16179945-16180065 3e-05 67_[+2]_45 chr2L:1732432-1732552 4.1e-05 41_[+2]_71 chr3L:16682553-16682673 4.1e-05 39_[+2]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYCWC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACYCWC width=8 seqs=13 chr2R:9137321-9137441 ( 94) CCACCCCC 1 chr2L:8094094-8094214 ( 12) CCACCCCC 1 chr3L:16002105-16002225 ( 19) CCACCCTC 1 chr2R:22227588-22227708 ( 49) CCACCCAC 1 chr3L:18033908-18034028 ( 55) CCTCCCTC 1 chr2L:7726362-7726482 ( 80) CCTCCCTC 1 chr3R:24566961-24567081 ( 17) CCACTCAC 1 chr3R:8823150-8823270 ( 110) CCACTCAC 1 chr2L:20674908-20675028 ( 79) CCACTCAC 1 chrX:13840193-13840313 ( 3) CCTCTCCC 1 chr2R:16179945-16180065 ( 68) CCTCTCTC 1 chr2L:1732432-1732552 ( 42) CAACCCTC 1 chr3L:16682553-16682673 ( 40) CAACCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYCWC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 5.4e+004 -1035 260 -1035 -1035 -112 236 -1035 -1035 105 -1035 -1035 -12 -1035 260 -1035 -1035 -1035 190 -1035 20 -1035 260 -1035 -1035 -12 48 -1035 46 -1035 260 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYCWC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.4e+004 0.000000 1.000000 0.000000 0.000000 0.153846 0.846154 0.000000 0.000000 0.692308 0.000000 0.000000 0.307692 0.000000 1.000000 0.000000 0.000000 0.000000 0.615385 0.000000 0.384615 0.000000 1.000000 0.000000 0.000000 0.307692 0.230769 0.000000 0.461538 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACYCWC MEME-2 regular expression -------------------------------------------------------------------------------- CC[AT]C[CT]C[TAC]C -------------------------------------------------------------------------------- Time 13.81 secs. ******************************************************************************** ******************************************************************************** MOTIF ATATGCAC MEME-3 width = 8 sites = 17 llr = 163 E-value = 9.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATATGCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A a38:::9: pos.-specific C :::::a:a probability G :12:a:1: matrix T :6:a:::: bits 2.6 ** * 2.3 ** * 2.1 ** * 1.8 ** * Relative 1.6 * *** * Entropy 1.3 * ***** (13.8 bits) 1.0 * ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ATATGCAC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATGCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21649099-21649219 20 1.88e-05 CAGTTGGCAA ATATGCAC TCTGCTATCT chr3L:21972513-21972633 102 1.88e-05 GCAGACTTAC ATATGCAC ACACAGAGAA chr2L:12521777-12521897 31 1.88e-05 TATATACTAT ATATGCAC ACATGACAAT chr3L:20353845-20353965 64 1.88e-05 AGTAACCTAA ATATGCAC GACTTTAATA chr3R:24865061-24865181 84 1.88e-05 GTATCTATGC ATATGCAC ATTGTTGTGT chr3R:5280532-5280652 107 1.88e-05 GACCAGAATT ATATGCAC AACAAG chr2R:13293840-13293960 58 1.88e-05 CCAGAAGTAA ATATGCAC TCGTATATTA chrX:2108697-2108817 24 4.68e-05 GTACATATGT ATGTGCAC ATAAACTCTA chr2R:14882081-14882201 103 4.68e-05 GTCGCGTGGT ATGTGCAC CAGCATTTTA chr3R:9951178-9951298 66 4.68e-05 GTGGGAAAAC AAATGCAC CCCAGCAAAC chr2L:11841626-11841746 44 4.68e-05 ATTATTCGCG AAATGCAC TCTTCGTAAT chr2L:1730980-1731100 77 4.68e-05 ATATATAAAT ATGTGCAC AAGATTAAGT chr4:922762-922882 2 4.68e-05 G AAATGCAC TTACTAAAAC chrX:13735021-13735141 102 4.68e-05 TTGAGATTAA AAATGCAC AATTTTCAAT chr3R:10075528-10075648 20 4.68e-05 CATGAATTAT AAATGCAC TAATTGGCGT chr3R:14711592-14711712 23 6.53e-05 CACTCAGAAA AGATGCAC AGGAAAAGAT chr2L:3059296-3059416 31 7.46e-05 GTGTGCCGGT ATATGCGC GGTCAAAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATGCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21649099-21649219 1.9e-05 19_[+3]_93 chr3L:21972513-21972633 1.9e-05 101_[+3]_11 chr2L:12521777-12521897 1.9e-05 30_[+3]_82 chr3L:20353845-20353965 1.9e-05 63_[+3]_49 chr3R:24865061-24865181 1.9e-05 83_[+3]_29 chr3R:5280532-5280652 1.9e-05 106_[+3]_6 chr2R:13293840-13293960 1.9e-05 57_[+3]_55 chrX:2108697-2108817 4.7e-05 23_[+3]_89 chr2R:14882081-14882201 4.7e-05 102_[+3]_10 chr3R:9951178-9951298 4.7e-05 65_[+3]_47 chr2L:11841626-11841746 4.7e-05 43_[+3]_69 chr2L:1730980-1731100 4.7e-05 76_[+3]_36 chr4:922762-922882 4.7e-05 1_[+3]_111 chrX:13735021-13735141 4.7e-05 101_[+3]_11 chr3R:10075528-10075648 4.7e-05 19_[+3]_93 chr3R:14711592-14711712 6.5e-05 22_[+3]_90 chr2L:3059296-3059416 7.5e-05 30_[+3]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATGCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATATGCAC width=8 seqs=17 chr2R:21649099-21649219 ( 20) ATATGCAC 1 chr3L:21972513-21972633 ( 102) ATATGCAC 1 chr2L:12521777-12521897 ( 31) ATATGCAC 1 chr3L:20353845-20353965 ( 64) ATATGCAC 1 chr3R:24865061-24865181 ( 84) ATATGCAC 1 chr3R:5280532-5280652 ( 107) ATATGCAC 1 chr2R:13293840-13293960 ( 58) ATATGCAC 1 chrX:2108697-2108817 ( 24) ATGTGCAC 1 chr2R:14882081-14882201 ( 103) ATGTGCAC 1 chr3R:9951178-9951298 ( 66) AAATGCAC 1 chr2L:11841626-11841746 ( 44) AAATGCAC 1 chr2L:1730980-1731100 ( 77) ATGTGCAC 1 chr4:922762-922882 ( 2) AAATGCAC 1 chrX:13735021-13735141 ( 102) AAATGCAC 1 chr3R:10075528-10075648 ( 20) AAATGCAC 1 chr3R:14711592-14711712 ( 23) AGATGCAC 1 chr2L:3059296-3059416 ( 31) ATATGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATGCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.9265 E= 9.6e+004 158 -1073 -1073 -1073 -19 -1073 -149 95 130 -1073 10 -1073 -1073 -1073 -1073 158 -1073 -1073 260 -1073 -1073 260 -1073 -1073 149 -1073 -149 -1073 -1073 260 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATGCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 9.6e+004 1.000000 0.000000 0.000000 0.000000 0.294118 0.000000 0.058824 0.647059 0.823529 0.000000 0.176471 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.941176 0.000000 0.058824 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATGCAC MEME-3 regular expression -------------------------------------------------------------------------------- A[TA]ATGCAC -------------------------------------------------------------------------------- Time 20.06 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTTGAA MEME-4 width = 8 sites = 12 llr = 124 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTTGAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::aa pos.-specific C a:8::::: probability G ::3::a:: matrix T :::aa::: bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * * Relative 1.6 ******** Entropy 1.3 ******** (14.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CACTTGAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTGAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19461572-19461692 97 1.88e-05 GACATGCATA CACTTGAA TAGTTTACGT chrX:12765853-12765973 87 1.88e-05 TCTTCCTATG CACTTGAA ATACAAATGA chr3R:7945025-7945145 22 1.88e-05 ACAATTGCTA CACTTGAA CAAATATTGT chr2L:11841626-11841746 78 1.88e-05 TGGCGAAAGC CACTTGAA CGAAAGTATT chr2R:16179945-16180065 82 1.88e-05 TCTCTTTTTG CACTTGAA ATTGCAATTG chr2L:15055876-15055996 64 1.88e-05 TTTTATTGGT CACTTGAA TTATAGCTCT chr3R:25762541-25762661 108 1.88e-05 ACTGTAGTTC CACTTGAA CTAAA chr2R:24954728-24954848 17 1.88e-05 CGCGACGCGA CACTTGAA CATCGAACGC chr2R:12185542-12185662 53 1.88e-05 TATAAGTATG CACTTGAA ATTGCTATCT chr2R:13937506-13937626 9 3.76e-05 TTAAGCGA CAGTTGAA AAGGCAATAA chr3L:8787977-8788097 13 3.76e-05 ATGGCGCCAC CAGTTGAA GATAAGAAAT chr2R:9130039-9130159 67 3.76e-05 TCTTTTCATA CAGTTGAA TTTAGGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTGAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19461572-19461692 1.9e-05 96_[+4]_16 chrX:12765853-12765973 1.9e-05 86_[+4]_26 chr3R:7945025-7945145 1.9e-05 21_[+4]_91 chr2L:11841626-11841746 1.9e-05 77_[+4]_35 chr2R:16179945-16180065 1.9e-05 81_[+4]_31 chr2L:15055876-15055996 1.9e-05 63_[+4]_49 chr3R:25762541-25762661 1.9e-05 107_[+4]_5 chr2R:24954728-24954848 1.9e-05 16_[+4]_96 chr2R:12185542-12185662 1.9e-05 52_[+4]_60 chr2R:13937506-13937626 3.8e-05 8_[+4]_104 chr3L:8787977-8788097 3.8e-05 12_[+4]_100 chr2R:9130039-9130159 3.8e-05 66_[+4]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTGAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTTGAA width=8 seqs=12 chr2R:19461572-19461692 ( 97) CACTTGAA 1 chrX:12765853-12765973 ( 87) CACTTGAA 1 chr3R:7945025-7945145 ( 22) CACTTGAA 1 chr2L:11841626-11841746 ( 78) CACTTGAA 1 chr2R:16179945-16180065 ( 82) CACTTGAA 1 chr2L:15055876-15055996 ( 64) CACTTGAA 1 chr3R:25762541-25762661 ( 108) CACTTGAA 1 chr2R:24954728-24954848 ( 17) CACTTGAA 1 chr2R:12185542-12185662 ( 53) CACTTGAA 1 chr2R:13937506-13937626 ( 9) CAGTTGAA 1 chr3L:8787977-8788097 ( 13) CAGTTGAA 1 chr2R:9130039-9130159 ( 67) CAGTTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTGAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 2.4e+004 -1023 260 -1023 -1023 158 -1023 -1023 -1023 -1023 218 60 -1023 -1023 -1023 -1023 158 -1023 -1023 -1023 158 -1023 -1023 260 -1023 158 -1023 -1023 -1023 158 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTGAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.4e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTGAA MEME-4 regular expression -------------------------------------------------------------------------------- CA[CG]TTGAA -------------------------------------------------------------------------------- Time 26.27 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCGCCCC MEME-5 width = 8 sites = 2 llr = 27 E-value = 9.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :aa:aaaa probability G :::a:::: matrix T :::::::: bits 2.6 ******* 2.3 ******* 2.1 ******* 1.8 ******* Relative 1.6 ******** Entropy 1.3 ******** (19.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ACCGCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9137321-9137441 112 1.11e-06 CGCAGCTCCC ACCGCCCC C chr2R:20314787-20314907 35 1.11e-06 CGCCCACCAT ACCGCCCC ATTTGGTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9137321-9137441 1.1e-06 111_[+5]_1 chr2R:20314787-20314907 1.1e-06 34_[+5]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCGCCCC width=8 seqs=2 chr2R:9137321-9137441 ( 112) ACCGCCCC 1 chr2R:20314787-20314907 ( 35) ACCGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 9.8e+004 158 -765 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -765 -765 259 -765 -765 259 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -765 259 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.8e+004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGCCCC MEME-5 regular expression -------------------------------------------------------------------------------- ACCGCCCC -------------------------------------------------------------------------------- Time 32.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:14614560-14614680 9.42e-01 120 chr2L:10694313-10694433 4.34e-01 120 chr3R:18315001-18315121 9.99e-01 120 chr3R:30101638-30101758 7.42e-01 120 chr3L:14556925-14557045 1.00e+00 120 chr2R:9130039-9130159 2.06e-01 66_[+4(3.76e-05)]_46 chr3L:17917710-17917830 7.77e-01 120 chr2L:4930678-4930798 9.36e-01 120 chr2L:8033884-8034004 9.72e-01 120 chr3L:11593941-11594061 8.33e-01 120 chr2R:6173441-6173561 1.00e+00 120 chr2L:8340457-8340577 4.37e-01 120 chr3R:29756213-29756333 5.21e-01 120 chr3L:15634796-15634916 9.93e-01 120 chr3R:18275516-18275636 1.22e-01 120 chr3R:18546283-18546403 9.97e-01 120 chr3L:11272784-11272904 9.99e-01 120 chr2L:8131002-8131122 4.17e-01 120 chr2L:8326601-8326721 2.55e-01 120 chr3R:17536913-17537033 9.90e-01 120 chr2R:13293840-13293960 5.08e-04 57_[+3(1.88e-05)]_55 chr3L:556793-556913 3.30e-01 120 chr3L:9361972-9362092 7.20e-01 120 chr2L:8203908-8204028 9.99e-01 120 chr2L:13156463-13156583 1.69e-01 120 chr2R:12185542-12185662 5.24e-03 52_[+4(1.88e-05)]_60 chr2R:11688717-11688837 7.79e-01 120 chr3R:31250560-31250680 4.97e-01 120 chr2L:12448340-12448460 9.24e-01 120 chr3R:10075528-10075648 1.98e-01 19_[+3(4.68e-05)]_93 chr2L:18713880-18714000 6.47e-01 120 chr2R:24954728-24954848 3.83e-04 16_[+4(1.88e-05)]_11_[+1(7.00e-05)]_\ 77 chr2L:5007447-5007567 9.85e-01 120 chr3L:16002105-16002225 2.94e-04 18_[+2(3.37e-06)]_94 chr2L:2772077-2772197 9.95e-01 120 chrX:13735021-13735141 4.76e-03 25_[+1(8.11e-05)]_68_[+3(4.68e-05)]_\ 11 chrX:12031554-12031674 9.53e-01 120 chr2R:10763108-10763228 9.09e-01 120 chrX:12913784-12913904 3.81e-01 120 chr3L:12078679-12078799 7.87e-03 64_[+1(8.11e-05)]_48 chr2L:9453638-9453758 9.07e-01 120 chr2R:10333098-10333218 2.36e-01 120 chr3R:9528023-9528143 1.81e-02 46_[+5(4.27e-05)]_66 chr3R:31306537-31306657 9.52e-01 120 chr2R:9184577-9184697 9.17e-01 120 chr4:922762-922882 1.57e-01 1_[+3(4.68e-05)]_111 chr3R:25762541-25762661 1.48e-01 107_[+4(1.88e-05)]_5 chr2R:7681978-7682098 1.00e-01 120 chr2R:13537322-13537442 3.11e-01 120 chr2L:17427307-17427427 1.33e-01 120 chr3L:5638793-5638913 8.74e-02 120 chr3R:5280532-5280652 6.75e-03 106_[+3(1.88e-05)]_6 chr3R:7076729-7076849 1.27e-01 60_[+1(2.10e-05)]_52 chr2L:1101834-1101954 6.07e-02 120 chr2L:20887492-20887612 5.62e-01 120 chr2L:16629324-16629444 5.34e-01 120 chr3L:9095811-9095931 1.66e-01 120 chr3R:24865061-24865181 2.20e-01 83_[+3(1.88e-05)]_29 chr2L:18985873-18985993 8.56e-01 120 chr3R:21960122-21960242 9.99e-01 120 chr3L:4116615-4116735 6.13e-01 120 chr2L:5434385-5434505 9.96e-01 120 chr3L:16682553-16682673 1.38e-01 39_[+2(4.09e-05)]_73 chr2L:14336602-14336722 4.79e-01 120 chr3L:3940699-3940819 5.98e-01 120 chr2R:19029813-19029933 3.47e-01 120 chr2L:1730980-1731100 3.75e-02 76_[+3(4.68e-05)]_36 chr2R:22227588-22227708 7.72e-04 48_[+2(5.62e-06)]_64 chr2L:15055876-15055996 2.06e-01 63_[+4(1.88e-05)]_49 chr3R:19212702-19212822 9.47e-01 120 chrX:11819362-11819482 9.88e-01 120 chr3L:20353845-20353965 7.93e-02 63_[+3(1.88e-05)]_49 chr2R:21647285-21647405 1.13e-01 120 chr2R:7243376-7243496 9.79e-01 120 chr3R:18902991-18903111 2.49e-01 120 chr3R:19132317-19132437 8.16e-02 120 chr3R:12674147-12674267 6.81e-01 120 chr3L:8985288-8985408 1.43e-01 120 chr2R:16179945-16180065 1.23e-06 67_[+2(2.95e-05)]_6_[+4(1.88e-05)]_\ 18_[+1(2.20e-06)]_5 chrX:17625917-17626037 4.61e-01 120 chr3R:14217992-14218112 8.90e-01 120 chr3R:10083240-10083360 1.66e-02 57_[+1(3.21e-05)]_55 chr2L:13808129-13808249 3.62e-01 120 chr2R:17490784-17490904 6.59e-01 120 chr2R:7958110-7958230 4.15e-01 120 chr2L:12022834-12022954 7.49e-02 120 chr3L:4293883-4294003 5.26e-01 120 chr3L:21501966-21502086 9.45e-01 120 chrX:8511089-8511209 7.43e-01 120 chr2L:2216215-2216335 2.78e-01 120 chr3L:16359365-16359485 2.36e-03 68_[+3(9.30e-05)]_44 chr2L:8255498-8255618 1.00e+00 120 chr3R:12676464-12676584 9.99e-01 120 chr3R:15898416-15898536 9.89e-01 120 chr3R:24278927-24279047 1.31e-02 41_[+1(8.11e-05)]_71 chr3L:7752910-7753030 9.98e-01 120 chr2L:7726362-7726482 3.58e-04 79_[+2(9.00e-06)]_33 chr3R:15366991-15367111 8.04e-01 120 chr3R:21195706-21195826 9.70e-01 120 chr2R:14881310-14881430 2.23e-01 120 chr3L:9059982-9060102 6.80e-01 120 chr2L:20674908-20675028 5.61e-04 78_[+2(2.27e-05)]_8_[+1(1.88e-05)]_\ 18 chr3R:23938832-23938952 4.75e-02 120 chr2R:23683086-23683206 2.83e-01 120 chr2L:13844049-13844169 9.12e-01 120 chr2R:17097864-17097984 1.45e-01 120 chr2L:6615119-6615239 3.68e-01 120 chr3L:18033908-18034028 1.47e-04 54_[+2(9.00e-06)]_5_[+1(2.20e-06)]_\ 45 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************