******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3281.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:14239372-14239492 1.0000 120 chr2L:10976348-10976468 1.0000 120 chr3R:24719567-24719687 1.0000 120 chr2L:11990791-11990911 1.0000 120 chr2L:19452829-19452949 1.0000 120 chr2L:10180311-10180431 1.0000 120 chr2R:20278863-20278983 1.0000 120 chr3R:5564764-5564884 1.0000 120 chr3L:6994599-6994719 1.0000 120 chr2R:10886739-10886859 1.0000 120 chr2L:10976553-10976673 1.0000 120 chr2L:4979317-4979437 1.0000 120 chr3R:19044769-19044889 1.0000 120 chr2L:13296276-13296396 1.0000 120 chrX:3965272-3965392 1.0000 120 chr3L:14274092-14274212 1.0000 120 chr2L:12712410-12712530 1.0000 120 chr2R:7989798-7989918 1.0000 120 chr3L:17994951-17995071 1.0000 120 chr2L:18965721-18965841 1.0000 120 chr2R:22205676-22205796 1.0000 120 chr3R:11243193-11243313 1.0000 120 chr3R:15265514-15265634 1.0000 120 chr2L:10263516-10263636 1.0000 120 chr3R:25855749-25855869 1.0000 120 chr3R:24717443-24717563 1.0000 120 chr3R:12657097-12657217 1.0000 120 chr3L:20221497-20221617 1.0000 120 chr3R:7524290-7524410 1.0000 120 chr2R:23697874-23697994 1.0000 120 chr3L:11556825-11556945 1.0000 120 chrX:22488443-22488563 1.0000 120 chr2L:1619264-1619384 1.0000 120 chr3R:12543092-12543212 1.0000 120 chr2L:1637967-1638087 1.0000 120 chr3L:4445970-4446090 1.0000 120 chr3L:19910229-19910349 1.0000 120 chr3L:17791641-17791761 1.0000 120 chr2R:22886489-22886609 1.0000 120 chr2R:15846367-15846487 1.0000 120 chr2L:413011-413131 1.0000 120 chr3R:26945400-26945520 1.0000 120 chr3R:5563633-5563753 1.0000 120 chr2R:23615227-23615347 1.0000 120 chr2R:22508207-22508327 1.0000 120 chr3L:19909394-19909514 1.0000 120 chr3R:22491525-22491645 1.0000 120 chr3R:5564977-5565097 1.0000 120 chrX:13320907-13321027 1.0000 120 chr3L:7367946-7368066 1.0000 120 chr3L:17949754-17949874 1.0000 120 chr3L:19263609-19263729 1.0000 120 chrX:13676620-13676740 1.0000 120 chrX:14593253-14593373 1.0000 120 chrX:18004295-18004415 1.0000 120 chr2R:17918893-17919013 1.0000 120 chr3R:28959266-28959386 1.0000 120 chr3R:18438853-18438973 1.0000 120 chr3L:3932868-3932988 1.0000 120 chr2R:11202095-11202215 1.0000 120 chr2L:1048513-1048633 1.0000 120 chr3L:19940479-19940599 1.0000 120 chr3R:30198942-30199062 1.0000 120 chr2L:3719662-3719782 1.0000 120 chr3R:10161279-10161399 1.0000 120 chr2L:16271125-16271245 1.0000 120 chr3R:17966132-17966252 1.0000 120 chr3R:5746782-5746902 1.0000 120 chr2L:3323545-3323665 1.0000 120 chr2R:14275536-14275656 1.0000 120 chr3R:14731701-14731821 1.0000 120 chr3L:16657093-16657213 1.0000 120 chr2L:4382677-4382797 1.0000 120 chr3L:13912912-13913032 1.0000 120 chr3R:22123544-22123664 1.0000 120 chr3R:30325595-30325715 1.0000 120 chr3R:9430477-9430597 1.0000 120 chr2R:21640766-21640886 1.0000 120 chr3L:20494235-20494355 1.0000 120 chrX:17132826-17132946 1.0000 120 chr3R:12562170-12562290 1.0000 120 chrX:6039570-6039690 1.0000 120 chr2L:3755268-3755388 1.0000 120 chr2R:10079865-10079985 1.0000 120 chr2R:7883195-7883315 1.0000 120 chrX:9004501-9004621 1.0000 120 chrX:18125649-18125769 1.0000 120 chr3L:9402160-9402280 1.0000 120 chr2R:20270942-20271062 1.0000 120 chr3L:21859739-21859859 1.0000 120 chrX:3282089-3282209 1.0000 120 chr3L:19087945-19088065 1.0000 120 chr2L:7778399-7778519 1.0000 120 chr3R:22057223-22057343 1.0000 120 chr2R:16581781-16581901 1.0000 120 chr2L:17388161-17388281 1.0000 120 chr3L:1151784-1151904 1.0000 120 chrX:6439614-6439734 1.0000 120 chr3L:10827388-10827508 1.0000 120 chr2L:18953945-18954065 1.0000 120 chr3L:17310611-17310731 1.0000 120 chr3L:11258557-11258677 1.0000 120 chr3R:26555988-26556108 1.0000 120 chr2R:15480297-15480417 1.0000 120 chr3R:22121368-22121488 1.0000 120 chr2R:22661313-22661433 1.0000 120 chr3R:13710780-13710900 1.0000 120 chr2R:24139218-24139338 1.0000 120 chr2L:85207-85327 1.0000 120 chr3L:8741333-8741453 1.0000 120 chrX:11885478-11885598 1.0000 120 chr3R:16213856-16213976 1.0000 120 chr3L:9899168-9899288 1.0000 120 chr3R:28327277-28327397 1.0000 120 chr3R:29651620-29651740 1.0000 120 chr3L:21321913-21322033 1.0000 120 chr3R:8577847-8577967 1.0000 120 chr2L:18658319-18658439 1.0000 120 chr3L:19216569-19216689 1.0000 120 chr2L:2348628-2348748 1.0000 120 chr3R:13837940-13838060 1.0000 120 chr3L:1609785-1609905 1.0000 120 chr2R:13909079-13909199 1.0000 120 chr2L:3228854-3228974 1.0000 120 chr2L:7443079-7443199 1.0000 120 chr2L:14141390-14141510 1.0000 120 chr3R:16215089-16215209 1.0000 120 chr2L:18966952-18967072 1.0000 120 chrX:3399355-3399475 1.0000 120 chrX:22449416-22449536 1.0000 120 chr3L:7866699-7866819 1.0000 120 chr2R:12035092-12035212 1.0000 120 chr2R:21178780-21178900 1.0000 120 chr2R:22387347-22387467 1.0000 120 chrX:11441071-11441191 1.0000 120 chr3R:23191555-23191675 1.0000 120 chr2L:13882049-13882169 1.0000 120 chr2L:4829149-4829269 1.0000 120 chr3L:3411830-3411950 1.0000 120 chr2R:18605503-18605623 1.0000 120 chrX:4529977-4530097 1.0000 120 chrX:15120251-15120371 1.0000 120 chrX:8112861-8112981 1.0000 120 chr3L:1859665-1859785 1.0000 120 chr3L:7262618-7262738 1.0000 120 chr3L:14190167-14190287 1.0000 120 chr2L:19930201-19930321 1.0000 120 chrX:16580137-16580257 1.0000 120 chr2R:22062496-22062616 1.0000 120 chr2R:24561040-24561160 1.0000 120 chrX:18094832-18094952 1.0000 120 chr3L:2913384-2913504 1.0000 120 chrX:19453304-19453424 1.0000 120 chr2L:1837823-1837943 1.0000 120 chr3R:10699233-10699353 1.0000 120 chr2L:8894380-8894500 1.0000 120 chr3L:15034444-15034564 1.0000 120 chr3L:960729-960849 1.0000 120 chrX:11379269-11379389 1.0000 120 chr3L:12270076-12270196 1.0000 120 chr2L:10143479-10143599 1.0000 120 chr3R:20950302-20950422 1.0000 120 chr3L:4025872-4025992 1.0000 120 chr2L:12542125-12542245 1.0000 120 chr2L:3880259-3880379 1.0000 120 chrX:2591757-2591877 1.0000 120 chr3L:7960979-7961099 1.0000 120 chr3R:31636655-31636775 1.0000 120 chr2R:21091939-21092059 1.0000 120 chr2R:17085678-17085798 1.0000 120 chr3L:9691255-9691375 1.0000 120 chrX:17330402-17330522 1.0000 120 chrX:14169222-14169342 1.0000 120 chr3L:17113352-17113472 1.0000 120 chr3R:10689002-10689122 1.0000 120 chr3L:16232011-16232131 1.0000 120 chr3R:11153977-11154097 1.0000 120 chr2R:10123658-10123778 1.0000 120 chr3R:16476614-16476734 1.0000 120 chr3R:27289799-27289919 1.0000 120 chr3R:29480080-29480200 1.0000 120 chr3L:3970434-3970554 1.0000 120 chr3L:22471716-22471836 1.0000 120 chr3L:15814190-15814310 1.0000 120 chr2R:7879117-7879237 1.0000 120 chr2L:20840587-20840707 1.0000 120 chr2R:16110052-16110172 1.0000 120 chr2R:8734634-8734754 1.0000 120 chr3L:12409107-12409227 1.0000 120 chr3R:14875700-14875820 1.0000 120 chr2R:11602101-11602221 1.0000 120 chr3L:10866754-10866874 1.0000 120 chrX:5664353-5664473 1.0000 120 chr3R:20555130-20555250 1.0000 120 chr3R:29089828-29089948 1.0000 120 chr3R:17526208-17526328 1.0000 120 chr3R:5413125-5413245 1.0000 120 chr2L:16819829-16819949 1.0000 120 chr3R:15129019-15129139 1.0000 120 chr3L:13923455-13923575 1.0000 120 chr2L:9775381-9775501 1.0000 120 chrX:947612-947732 1.0000 120 chr2L:19121031-19121151 1.0000 120 chr2R:18994148-18994268 1.0000 120 chrX:16275884-16276004 1.0000 120 chrX:11081361-11081481 1.0000 120 chr3L:6609296-6609416 1.0000 120 chr3L:18791800-18791920 1.0000 120 chr3L:20784904-20785024 1.0000 120 chr3R:10139877-10139997 1.0000 120 chr2L:20429081-20429201 1.0000 120 chr2L:73145-73265 1.0000 120 chrX:16385965-16386085 1.0000 120 chr3L:19847095-19847215 1.0000 120 chr3L:11351487-11351607 1.0000 120 chr3L:16147991-16148111 1.0000 120 chrX:19751038-19751158 1.0000 120 chr3L:12850024-12850144 1.0000 120 chrX:10184801-10184921 1.0000 120 chr3R:26280504-26280624 1.0000 120 chr3L:14613883-14614003 1.0000 120 chrX:1270711-1270831 1.0000 120 chr3R:10411874-10411994 1.0000 120 chr3L:15549086-15549206 1.0000 120 chr2L:5096961-5097081 1.0000 120 chr2R:18835064-18835184 1.0000 120 chr3L:17669356-17669476 1.0000 120 chrX:13626045-13626165 1.0000 120 chr2R:24293618-24293738 1.0000 120 chrX:9119363-9119483 1.0000 120 chr3R:26105955-26106075 1.0000 120 chr3L:4521942-4522062 1.0000 120 chr3L:9402359-9402479 1.0000 120 chrX:19166389-19166509 1.0000 120 chr3R:10520653-10520773 1.0000 120 chr3R:23228729-23228849 1.0000 120 chr2L:13296479-13296599 1.0000 120 chr3R:29891323-29891443 1.0000 120 chrX:15297339-15297459 1.0000 120 chrX:6592170-6592290 1.0000 120 chr2R:18435239-18435359 1.0000 120 chr2L:9493441-9493561 1.0000 120 chr3R:27153573-27153693 1.0000 120 chr3L:18997186-18997306 1.0000 120 chrX:8493625-8493745 1.0000 120 chr3R:23347000-23347120 1.0000 120 chr3L:3078577-3078697 1.0000 120 chr3L:3770935-3771055 1.0000 120 chr3L:12803780-12803900 1.0000 120 chr3R:31134148-31134268 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG3281/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3281.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.329 C 0.169 G 0.168 T 0.334 Background letter frequencies (from file dataset with add-one prior applied): A 0.329 C 0.169 G 0.168 T 0.334 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGSSCTG MEME-1 width = 8 sites = 38 llr = 357 E-value = 7.4e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGSSCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :83::::: pos.-specific C a::7681: probability G :2734::a matrix T :::::29: bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * Relative 1.5 * ** * * Entropy 1.3 * ****** (13.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCCCTG consensus AGGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24561040-24561160 27 2.53e-06 ACATTTTCTT CAGCCCTG AGTTGAGTCT chr3R:13710780-13710900 59 2.53e-06 CCGCAACCTG CAGCCCTG GCCTCAACAG chr3R:10161279-10161399 27 2.53e-06 TTTTGATTAA CAGCCCTG CCTTGCAAAA chr3L:14274092-14274212 40 2.53e-06 AAAGGCATAA CAGCCCTG TCTTTCACTT chr2R:10886739-10886859 49 2.53e-06 AATTGTTAGC CAGCCCTG CCGAGCAAAA chr2L:19452829-19452949 58 2.53e-06 AAATACATAA CAGCCCTG TCTCTTTGGC chr2L:13296276-13296396 28 5.04e-06 ACTCTAATGG CAGCGCTG GCGAACGACA chr3L:17669356-17669476 23 1.14e-05 TATTTAAAGC CAGGGCTG TCATTTCTAC chrX:19751038-19751158 80 1.14e-05 GAAGCTAAGA CAGGGCTG TTCGACAACC chr3L:9899168-9899288 23 1.14e-05 AACTGTTGAC CAGGGCTG GAAACGGCAA chr3R:26945400-26945520 2 1.14e-05 G CGGCCCTG AAATTCAGTA chrX:3965272-3965392 38 1.14e-05 AATTCGATAC CAGGGCTG CGCAACAACT chr2L:10976348-10976468 56 1.14e-05 GCATTGGGGC CAGGGCTG GAGCACTAGT chr2R:14239372-14239492 34 1.14e-05 ATCGCAAAAG CAGGGCTG TTACACAAGG chrX:19166389-19166509 48 1.39e-05 TTCTGTTGAG CAGCCCCG ATTAAAGTGA chr3L:1609785-1609905 80 1.39e-05 ATTTATTCGA CAGCCCCG CGACAACAAC chr3R:13837940-13838060 40 1.89e-05 TGAGGGAGTG CAACCCTG TTCGGCATTG chr3L:9402160-9402280 46 1.89e-05 TCTTGTGCAA CAACCCTG TTTTTGTTGT chr2L:4382677-4382797 61 1.89e-05 CAACAACGGG CAACCCTG TTTTCAGCGT chr3L:19910229-19910349 65 1.89e-05 GGCGACATGA CAACCCTG ACTTTTATGT chr3R:15265514-15265634 62 1.89e-05 CCATTCAAAA CAACCCTG CCACACGTCG chr2R:7989798-7989918 57 1.89e-05 GTTTGCAAGC CAACCCTG TCTCTCCTTG chr3L:6994599-6994719 36 1.89e-05 CCGCAGTTGC CAACCCTG ATATTTTCCC chr3R:5564764-5564884 43 1.89e-05 ATCGCACCAA CAACCCTG ACTTATCGCT chr2R:20278863-20278983 59 3.26e-05 TGACATTGGA CGGGGCTG TTAAGCTCAG chr2L:10143479-10143599 75 4.38e-05 AATGAGTTTG CAGCGTTG ACTTTAAAGC chrX:16275884-16276004 53 4.57e-05 CACCGATTAC CAGGGCCG GCATAGCGAT chrX:4529977-4530097 34 5.31e-05 CGTTGAACAA CGACCCTG TCTTTCCCAA chr3L:3932868-3932988 77 5.31e-05 TGTACCTTGG CGACCCTG ACAGGCGAAT chr3R:19044769-19044889 67 5.31e-05 ACTTATACGA CGACCCTG GTTAACGTTA chr2R:22886489-22886609 79 7.13e-05 CGCCGGCGAC CAGGGTTG GCAAATCGGC chr2L:12712410-12712530 42 7.13e-05 TGTCTGGTGC CAGGGTTG CAAAGCAATG chr2L:10180311-10180431 62 7.13e-05 TCTGGCAGGA CAGGGTTG TTGGCGTCGA chr2L:11990791-11990911 47 7.13e-05 GTGATTTAAA CAGGGTTG TTCGTTTAGG chr3R:24719567-24719687 71 7.13e-05 ACGTTTGTGC CAGGGTTG TTCGTCGCCG chr3R:29891323-29891443 36 7.95e-05 TTTCAGGTGG CGGCGTTG TAATTTCTGT chr3R:5563633-5563753 56 8.26e-05 CGCCGAGTGG CAGCCTCG CACATGAGAG chr2R:8734634-8734754 24 1.07e-04 ATTAAATTCC CAGCACTG ACTGAAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24561040-24561160 2.5e-06 26_[+1]_86 chr3R:13710780-13710900 2.5e-06 58_[+1]_54 chr3R:10161279-10161399 2.5e-06 26_[+1]_86 chr3L:14274092-14274212 2.5e-06 39_[+1]_73 chr2R:10886739-10886859 2.5e-06 48_[+1]_64 chr2L:19452829-19452949 2.5e-06 57_[+1]_55 chr2L:13296276-13296396 5e-06 27_[+1]_85 chr3L:17669356-17669476 1.1e-05 22_[+1]_90 chrX:19751038-19751158 1.1e-05 79_[+1]_33 chr3L:9899168-9899288 1.1e-05 22_[+1]_90 chr3R:26945400-26945520 1.1e-05 1_[+1]_111 chrX:3965272-3965392 1.1e-05 37_[+1]_75 chr2L:10976348-10976468 1.1e-05 55_[+1]_57 chr2R:14239372-14239492 1.1e-05 33_[+1]_79 chrX:19166389-19166509 1.4e-05 47_[+1]_65 chr3L:1609785-1609905 1.4e-05 79_[+1]_33 chr3R:13837940-13838060 1.9e-05 39_[+1]_73 chr3L:9402160-9402280 1.9e-05 45_[+1]_67 chr2L:4382677-4382797 1.9e-05 60_[+1]_52 chr3L:19910229-19910349 1.9e-05 64_[+1]_48 chr3R:15265514-15265634 1.9e-05 61_[+1]_51 chr2R:7989798-7989918 1.9e-05 56_[+1]_56 chr3L:6994599-6994719 1.9e-05 35_[+1]_77 chr3R:5564764-5564884 1.9e-05 42_[+1]_70 chr2R:20278863-20278983 3.3e-05 58_[+1]_54 chr2L:10143479-10143599 4.4e-05 74_[+1]_38 chrX:16275884-16276004 4.6e-05 52_[+1]_60 chrX:4529977-4530097 5.3e-05 33_[+1]_79 chr3L:3932868-3932988 5.3e-05 76_[+1]_36 chr3R:19044769-19044889 5.3e-05 66_[+1]_46 chr2R:22886489-22886609 7.1e-05 78_[+1]_34 chr2L:12712410-12712530 7.1e-05 41_[+1]_71 chr2L:10180311-10180431 7.1e-05 61_[+1]_51 chr2L:11990791-11990911 7.1e-05 46_[+1]_66 chr3R:24719567-24719687 7.1e-05 70_[+1]_42 chr3R:29891323-29891443 7.9e-05 35_[+1]_77 chr3R:5563633-5563753 8.3e-05 55_[+1]_57 chr2R:8734634-8734754 0.00011 23_[+1]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGSSCTG width=8 seqs=38 chr2R:24561040-24561160 ( 27) CAGCCCTG 1 chr3R:13710780-13710900 ( 59) CAGCCCTG 1 chr3R:10161279-10161399 ( 27) CAGCCCTG 1 chr3L:14274092-14274212 ( 40) CAGCCCTG 1 chr2R:10886739-10886859 ( 49) CAGCCCTG 1 chr2L:19452829-19452949 ( 58) CAGCCCTG 1 chr2L:13296276-13296396 ( 28) CAGCGCTG 1 chr3L:17669356-17669476 ( 23) CAGGGCTG 1 chrX:19751038-19751158 ( 80) CAGGGCTG 1 chr3L:9899168-9899288 ( 23) CAGGGCTG 1 chr3R:26945400-26945520 ( 2) CGGCCCTG 1 chrX:3965272-3965392 ( 38) CAGGGCTG 1 chr2L:10976348-10976468 ( 56) CAGGGCTG 1 chr2R:14239372-14239492 ( 34) CAGGGCTG 1 chrX:19166389-19166509 ( 48) CAGCCCCG 1 chr3L:1609785-1609905 ( 80) CAGCCCCG 1 chr3R:13837940-13838060 ( 40) CAACCCTG 1 chr3L:9402160-9402280 ( 46) CAACCCTG 1 chr2L:4382677-4382797 ( 61) CAACCCTG 1 chr3L:19910229-19910349 ( 65) CAACCCTG 1 chr3R:15265514-15265634 ( 62) CAACCCTG 1 chr2R:7989798-7989918 ( 57) CAACCCTG 1 chr3L:6994599-6994719 ( 36) CAACCCTG 1 chr3R:5564764-5564884 ( 43) CAACCCTG 1 chr2R:20278863-20278983 ( 59) CGGGGCTG 1 chr2L:10143479-10143599 ( 75) CAGCGTTG 1 chrX:16275884-16276004 ( 53) CAGGGCCG 1 chrX:4529977-4530097 ( 34) CGACCCTG 1 chr3L:3932868-3932988 ( 77) CGACCCTG 1 chr3R:19044769-19044889 ( 67) CGACCCTG 1 chr2R:22886489-22886609 ( 79) CAGGGTTG 1 chr2L:12712410-12712530 ( 42) CAGGGTTG 1 chr2L:10180311-10180431 ( 62) CAGGGTTG 1 chr2L:11990791-11990911 ( 47) CAGGGTTG 1 chr3R:24719567-24719687 ( 71) CAGGGTTG 1 chr3R:29891323-29891443 ( 36) CGGCGTTG 1 chr3R:5563633-5563753 ( 56) CAGCCTCG 1 chr2R:8734634-8734754 ( 24) CAGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9779 E= 7.4e-015 -1189 257 -1189 -1189 135 -1189 -9 -1189 -19 -1189 208 -1189 -1189 196 102 -1189 -364 171 132 -1189 -1189 223 -1189 -66 -1189 -68 -1189 142 -1189 -1189 257 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 7.4e-015 0.000000 1.000000 0.000000 0.000000 0.842105 0.000000 0.157895 0.000000 0.289474 0.000000 0.710526 0.000000 0.000000 0.657895 0.342105 0.000000 0.026316 0.552632 0.421053 0.000000 0.000000 0.789474 0.000000 0.210526 0.000000 0.105263 0.000000 0.894737 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGSSCTG MEME-1 regular expression -------------------------------------------------------------------------------- CA[GA][CG][CG][CT]TG -------------------------------------------------------------------------------- Time 7.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGGSS MEME-2 width = 8 sites = 11 llr = 116 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :21::::: pos.-specific C 1:8:::54 probability G 981a7a56 matrix T ::::3::: bits 2.6 * * 2.3 * * 2.1 * * * 1.8 ** * * Relative 1.5 ******** Entropy 1.3 ******** (15.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGGGG consensus T CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6592170-6592290 54 6.38e-07 GGGTGGCGGG GGCGGGGG GGTATGGGCA chr2L:17388161-17388281 32 6.38e-07 AGCATCGTCT GGCGGGGG ATTACTCCAT chr3R:10699233-10699353 111 1.28e-06 TGATAACGGA GGCGGGCG AA chr3R:7524290-7524410 71 2.57e-06 GGGAAAAAGA GGCGGGCC GCCCACCGAG chr2L:19452829-19452949 86 5.11e-06 GGCAACGCTT GGCGTGCG CCGTCTGTTG chrX:3282089-3282209 21 7.00e-06 AATGGTTGCG GGGGGGGG GGTGGTTATT chr3R:23228729-23228849 67 8.92e-06 TGATTTTTTA GGCGTGGC TCAATTGGGA chrX:4529977-4530097 80 1.46e-05 AGCGCCATCT GACGGGGC ATAGCACAAG chr2R:14239372-14239492 89 1.65e-05 CTTGTACAGC GGAGGGGG TAGTCGAATC chr2L:20840587-20840707 11 2.03e-05 GCTCGTTGAA CGCGGGCC ACTCTTTCAA chrX:2591757-2591877 47 3.16e-05 CCACTCAAGT GACGTGCG ATGCACCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6592170-6592290 6.4e-07 53_[+2]_59 chr2L:17388161-17388281 6.4e-07 31_[+2]_81 chr3R:10699233-10699353 1.3e-06 110_[+2]_2 chr3R:7524290-7524410 2.6e-06 70_[+2]_42 chr2L:19452829-19452949 5.1e-06 85_[+2]_27 chrX:3282089-3282209 7e-06 20_[+2]_92 chr3R:23228729-23228849 8.9e-06 66_[+2]_46 chrX:4529977-4530097 1.5e-05 79_[+2]_33 chr2R:14239372-14239492 1.7e-05 88_[+2]_24 chr2L:20840587-20840707 2e-05 10_[+2]_102 chrX:2591757-2591877 3.2e-05 46_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGGSS width=8 seqs=11 chrX:6592170-6592290 ( 54) GGCGGGGG 1 chr2L:17388161-17388281 ( 32) GGCGGGGG 1 chr3R:10699233-10699353 ( 111) GGCGGGCG 1 chr3R:7524290-7524410 ( 71) GGCGGGCC 1 chr2L:19452829-19452949 ( 86) GGCGTGCG 1 chrX:3282089-3282209 ( 21) GGGGGGGG 1 chr3R:23228729-23228849 ( 67) GGCGTGGC 1 chrX:4529977-4530097 ( 80) GACGGGGC 1 chr2R:14239372-14239492 ( 89) GGAGGGGG 1 chr2L:20840587-20840707 ( 11) CGCGGGCC 1 chrX:2591757-2591877 ( 47) GACGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 4.6e+003 -1010 -89 243 -1010 -86 -1010 228 -1010 -185 228 -89 -1010 -1010 -1010 257 -1010 -1010 -1010 211 -29 -1010 -1010 257 -1010 -1010 143 169 -1010 -1010 111 192 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.6e+003 0.000000 0.090909 0.909091 0.000000 0.181818 0.000000 0.818182 0.000000 0.090909 0.818182 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.545455 0.000000 0.000000 0.363636 0.636364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGGSS MEME-2 regular expression -------------------------------------------------------------------------------- GGCG[GT]G[GC][GC] -------------------------------------------------------------------------------- Time 13.39 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCARCGC MEME-3 width = 8 sites = 13 llr = 133 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCARCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::95:2: pos.-specific C 1:a::92a probability G 8a::517: matrix T :::1:::: bits 2.6 ** * 2.3 ** * 2.1 ** * * 1.8 ** * * Relative 1.5 *** * * Entropy 1.3 **** *** (14.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCAACGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20429081-20429201 53 1.27e-06 ATACAACAAA GGCAGCGC AGCAGTCTCG chr3R:13710780-13710900 83 3.74e-06 ACAGTTAGTT GGCAACGC GTGTTATCAG chr2L:10180311-10180431 13 3.74e-06 CTCGCAAGAA GGCAACGC CTGGCATTCG chr2L:19452829-19452949 76 3.74e-06 TCTCTTTGGC GGCAACGC TTGGCGTGCG chr3L:9899168-9899288 64 7.51e-06 GGCCAACACT GGCAACCC AAGCCAGGGT chr3R:26945400-26945520 72 7.51e-06 TGCACTTGAT GGCAACCC TAAACATTGG chr2R:23697874-23697994 45 9.98e-06 GTATAACTCA GGCAGCAC TATATTCATA chr3L:3770935-3771055 26 1.25e-05 CTTAATTTAT AGCAGCGC TTTTCATGAT chrX:4529977-4530097 67 1.25e-05 AAAACACGCT AGCAGCGC CATCTGACGG chr2R:22886489-22886609 94 1.63e-05 TTGGCAAATC GGCTGCGC CGGTAGTTGG chr2R:14239372-14239492 63 1.63e-05 AATGCGGAAA GGCAGGGC CGTTTTACCT chr2L:11990791-11990911 82 2.11e-05 GCTCTAGAAT GGCAACAC TGTTTTGCAC chr3R:29480080-29480200 87 2.85e-05 AAAGCCGCAT CGCAACGC CATCTCCCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20429081-20429201 1.3e-06 52_[+3]_60 chr3R:13710780-13710900 3.7e-06 82_[+3]_30 chr2L:10180311-10180431 3.7e-06 12_[+3]_100 chr2L:19452829-19452949 3.7e-06 75_[+3]_37 chr3L:9899168-9899288 7.5e-06 63_[+3]_49 chr3R:26945400-26945520 7.5e-06 71_[+3]_41 chr2R:23697874-23697994 1e-05 44_[+3]_68 chr3L:3770935-3771055 1.2e-05 25_[+3]_87 chrX:4529977-4530097 1.2e-05 66_[+3]_46 chr2R:22886489-22886609 1.6e-05 93_[+3]_19 chr2R:14239372-14239492 1.6e-05 62_[+3]_50 chr2L:11990791-11990911 2.1e-05 81_[+3]_31 chr3R:29480080-29480200 2.8e-05 86_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCARCGC width=8 seqs=13 chr2L:20429081-20429201 ( 53) GGCAGCGC 1 chr3R:13710780-13710900 ( 83) GGCAACGC 1 chr2L:10180311-10180431 ( 13) GGCAACGC 1 chr2L:19452829-19452949 ( 76) GGCAACGC 1 chr3L:9899168-9899288 ( 64) GGCAACCC 1 chr3R:26945400-26945520 ( 72) GGCAACCC 1 chr2R:23697874-23697994 ( 45) GGCAGCAC 1 chr3L:3770935-3771055 ( 26) AGCAGCGC 1 chrX:4529977-4530097 ( 67) AGCAGCGC 1 chr2R:22886489-22886609 ( 94) GGCTGCGC 1 chr2R:14239372-14239492 ( 63) GGCAGGGC 1 chr2L:11990791-11990911 ( 82) GGCAACAC 1 chr3R:29480080-29480200 ( 87) CGCAACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 6.2e+003 -110 -113 219 -1035 -1035 -1035 257 -1035 -1035 257 -1035 -1035 149 -1035 -1035 -211 71 -1035 145 -1035 -1035 245 -113 -1035 -110 -13 204 -1035 -1035 257 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 6.2e+003 0.153846 0.076923 0.769231 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.000000 0.000000 0.076923 0.538462 0.000000 0.461538 0.000000 0.000000 0.923077 0.076923 0.000000 0.153846 0.153846 0.692308 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-3 regular expression -------------------------------------------------------------------------------- GGCA[AG]CGC -------------------------------------------------------------------------------- Time 19.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGSCGGC MEME-4 width = 8 sites = 11 llr = 118 E-value = 7.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGSCGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::1:2 pos.-specific C :a16a:17 probability G ::94:891 matrix T a::::1:: bits 2.6 * * 2.3 * * 2.1 ** * * 1.8 ** * * Relative 1.5 ******* Entropy 1.3 ******** (15.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCGCCGGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22886489-22886609 68 1.29e-06 CTGGCCCGTT TCGCCGGC GACCAGGGTT chr3R:24719567-24719687 83 1.29e-06 GGGTTGTTCG TCGCCGGC TGTAACGGGC chr2R:15480297-15480417 80 2.58e-06 TAAATAACGC TCGGCGGC TTGTTGTGCT chr2R:7989798-7989918 38 2.58e-06 CAACAGCTGT TCGGCGGC TGTTTGCAAG chr3R:10139877-10139997 49 6.38e-06 ATCACCTCTT TCGCCGGA TTTTTGAAGT chr3R:30325595-30325715 108 6.38e-06 AAGAAAACTC TCGCCGGG TTTTT chrX:5664353-5664473 45 8.97e-06 TGCGCAGCTC TCCCCGGC GCTCCTGCTT chr2L:10976348-10976468 80 1.28e-05 TAGTTATCGA TCGGCGGA TAAATACCAA chr2L:20840587-20840707 29 2.04e-05 ACTCTTTCAA TCGCCTGC TTTCAATCTG chr3L:6994599-6994719 13 2.04e-05 GAACATATTT TCGGCGCC AATTTCCGCA chr3R:5564764-5564884 102 2.04e-05 ACAAATGTTA TCGCCAGC CCTATTCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22886489-22886609 1.3e-06 67_[+4]_45 chr3R:24719567-24719687 1.3e-06 82_[+4]_30 chr2R:15480297-15480417 2.6e-06 79_[+4]_33 chr2R:7989798-7989918 2.6e-06 37_[+4]_75 chr3R:10139877-10139997 6.4e-06 48_[+4]_64 chr3R:30325595-30325715 6.4e-06 107_[+4]_5 chrX:5664353-5664473 9e-06 44_[+4]_68 chr2L:10976348-10976468 1.3e-05 79_[+4]_33 chr2L:20840587-20840707 2e-05 28_[+4]_84 chr3L:6994599-6994719 2e-05 12_[+4]_100 chr3R:5564764-5564884 2e-05 101_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGSCGGC width=8 seqs=11 chr2R:22886489-22886609 ( 68) TCGCCGGC 1 chr3R:24719567-24719687 ( 83) TCGCCGGC 1 chr2R:15480297-15480417 ( 80) TCGGCGGC 1 chr2R:7989798-7989918 ( 38) TCGGCGGC 1 chr3R:10139877-10139997 ( 49) TCGCCGGA 1 chr3R:30325595-30325715 ( 108) TCGCCGGG 1 chrX:5664353-5664473 ( 45) TCCCCGGC 1 chr2L:10976348-10976468 ( 80) TCGGCGGA 1 chr2L:20840587-20840707 ( 29) TCGCCTGC 1 chr3L:6994599-6994719 ( 13) TCGGCGCC 1 chr3R:5564764-5564884 ( 102) TCGCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 7.2e+002 -1010 -1010 -1010 158 -1010 257 -1010 -1010 -1010 -89 243 -1010 -1010 192 111 -1010 -1010 257 -1010 -1010 -185 -1010 228 -187 -1010 -89 243 -1010 -86 211 -89 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.2e+002 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.000000 0.818182 0.090909 0.000000 0.090909 0.909091 0.000000 0.181818 0.727273 0.090909 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGSCGGC MEME-4 regular expression -------------------------------------------------------------------------------- TCG[CG]CGGC -------------------------------------------------------------------------------- Time 25.69 secs. ******************************************************************************** ******************************************************************************** MOTIF BGYGSCCA MEME-5 width = 8 sites = 14 llr = 141 E-value = 6.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif BGYGSCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 4:6169a: probability G 3a:941:: matrix T 3:4::::: bits 2.6 * * 2.3 * ** 2.1 * * ** 1.8 * * ** Relative 1.5 * ***** Entropy 1.3 ******* (14.5 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCGCCCA consensus G T G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGYGSCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22205676-22205796 11 1.28e-06 GCAGTGAAAA CGCGCCCA AAAAATCTCA chr3L:14613883-14614003 2 3.83e-06 T GGCGCCCA ACAGAGAAAA chr3R:8577847-8577967 108 3.83e-06 TGACTGACGT GGCGCCCA CTCCG chr3L:7960979-7961099 55 1.02e-05 ATAAGACTAC CGTGCCCA TAAAGATACA chr2L:8894380-8894500 82 1.27e-05 TAACTCTTCA TGCGGCCA ACTCAAAGGG chr2L:85207-85327 80 1.27e-05 TGACTGACAT TGCGGCCA CGAAATCAGG chr2L:4979317-4979437 29 1.27e-05 GACTAAAGCA TGCGGCCA AATCAGCTGT chrX:2591757-2591877 112 1.52e-05 TAGCTGGGAT CGTGGCCA A chr2R:22387347-22387467 100 1.90e-05 GACGTGAAAA CGCCCCCA TGCTCCAGAT chr3L:14274092-14274212 108 1.90e-05 AATTCAAGGT CGCCCCCA GTGCT chrX:15297339-15297459 111 2.15e-05 CCGCAAGTGT GGTGGCCA AG chr3L:9402359-9402479 59 2.15e-05 TTGGGATTTT GGTGGCCA GACAGTGTGG chr3L:10866754-10866874 53 2.90e-05 CATAATTCAT TGTGCCCA GGAACAATGT chr3R:22123544-22123664 90 3.16e-05 AGTACTCACA CGCGCGCA ATGTTGTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGYGSCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22205676-22205796 1.3e-06 10_[+5]_102 chr3L:14613883-14614003 3.8e-06 1_[+5]_111 chr3R:8577847-8577967 3.8e-06 107_[+5]_5 chr3L:7960979-7961099 1e-05 54_[+5]_58 chr2L:8894380-8894500 1.3e-05 81_[+5]_31 chr2L:85207-85327 1.3e-05 79_[+5]_33 chr2L:4979317-4979437 1.3e-05 28_[+5]_84 chrX:2591757-2591877 1.5e-05 111_[+5]_1 chr2R:22387347-22387467 1.9e-05 99_[+5]_13 chr3L:14274092-14274212 1.9e-05 107_[+5]_5 chrX:15297339-15297459 2.1e-05 110_[+5]_2 chr3L:9402359-9402479 2.1e-05 58_[+5]_54 chr3L:10866754-10866874 2.9e-05 52_[+5]_60 chr3R:22123544-22123664 3.2e-05 89_[+5]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGYGSCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BGYGSCCA width=8 seqs=14 chr2R:22205676-22205796 ( 11) CGCGCCCA 1 chr3L:14613883-14614003 ( 2) GGCGCCCA 1 chr3R:8577847-8577967 ( 108) GGCGCCCA 1 chr3L:7960979-7961099 ( 55) CGTGCCCA 1 chr2L:8894380-8894500 ( 82) TGCGGCCA 1 chr2L:85207-85327 ( 80) TGCGGCCA 1 chr2L:4979317-4979437 ( 29) TGCGGCCA 1 chrX:2591757-2591877 ( 112) CGTGGCCA 1 chr2R:22387347-22387467 ( 100) CGCCCCCA 1 chr3L:14274092-14274212 ( 108) CGCCCCCA 1 chrX:15297339-15297459 ( 111) GGTGGCCA 1 chr3L:9402359-9402479 ( 59) GGTGGCCA 1 chr3L:10866754-10866874 ( 53) TGTGCCCA 1 chr3R:22123544-22123664 ( 90) CGCGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGYGSCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 6.1e+003 -1045 135 76 -22 -1045 -1045 257 -1045 -1045 193 -1045 10 -1045 -24 235 -1045 -1045 176 135 -1045 -1045 246 -124 -1045 -1045 257 -1045 -1045 160 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGYGSCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 6.1e+003 0.000000 0.428571 0.285714 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.642857 0.000000 0.357143 0.000000 0.142857 0.857143 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGYGSCCA MEME-5 regular expression -------------------------------------------------------------------------------- [CGT]G[CT]G[CG]CCA -------------------------------------------------------------------------------- Time 31.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14239372-14239492 3.03e-07 33_[+1(1.14e-05)]_21_[+3(1.63e-05)]_\ 18_[+2(1.65e-05)]_24 chr2L:10976348-10976468 1.32e-05 55_[+1(1.14e-05)]_16_[+4(1.28e-05)]_\ 33 chr3R:24719567-24719687 1.27e-04 70_[+1(7.13e-05)]_4_[+4(1.29e-06)]_\ 30 chr2L:11990791-11990911 4.71e-03 46_[+1(7.13e-05)]_27_[+3(2.11e-05)]_\ 31 chr2L:19452829-19452949 2.53e-09 57_[+1(2.53e-06)]_10_[+3(3.74e-06)]_\ 2_[+2(5.11e-06)]_27 chr2L:10180311-10180431 3.08e-05 12_[+3(3.74e-06)]_34_[+3(6.45e-05)]_\ 58 chr2R:20278863-20278983 2.13e-03 56_[+2(1.46e-05)]_56 chr3R:5564764-5564884 1.68e-05 42_[+1(1.89e-05)]_51_[+4(2.04e-05)]_\ 11 chr3L:6994599-6994719 1.45e-05 12_[+4(2.04e-05)]_15_[+1(1.89e-05)]_\ 77 chr2R:10886739-10886859 6.07e-04 48_[+1(2.53e-06)]_23_[+1(1.89e-05)]_\ 33 chr2L:10976553-10976673 9.61e-01 120 chr2L:4979317-4979437 2.86e-03 28_[+5(1.27e-05)]_84 chr3R:19044769-19044889 5.95e-02 66_[+1(5.31e-05)]_46 chr2L:13296276-13296396 5.13e-06 25_[+3(1.27e-06)]_65_[+1(7.13e-05)]_\ 14 chrX:3965272-3965392 9.81e-05 37_[+1(1.14e-05)]_75 chr3L:14274092-14274212 4.91e-06 39_[+1(2.53e-06)]_60_[+5(1.90e-05)]_\ 5 chr2L:12712410-12712530 4.93e-03 41_[+1(7.13e-05)]_71 chr2R:7989798-7989918 2.61e-06 37_[+4(2.58e-06)]_11_[+1(1.89e-05)]_\ 37_[+4(5.70e-05)]_11 chr3L:17994951-17995071 8.61e-01 120 chr2L:18965721-18965841 5.63e-01 120 chr2R:22205676-22205796 1.41e-02 10_[+5(1.28e-06)]_102 chr3R:11243193-11243313 9.92e-01 120 chr3R:15265514-15265634 6.98e-03 61_[+1(1.89e-05)]_51 chr2L:10263516-10263636 1.35e-01 120 chr3R:25855749-25855869 5.52e-01 120 chr3R:24717443-24717563 9.05e-01 120 chr3R:12657097-12657217 3.47e-01 120 chr3L:20221497-20221617 9.99e-01 120 chr3R:7524290-7524410 5.70e-05 70_[+2(2.57e-06)]_6_[+2(6.49e-05)]_\ 28 chr2R:23697874-23697994 1.44e-02 44_[+3(9.98e-06)]_68 chr3L:11556825-11556945 6.31e-01 120 chrX:22488443-22488563 9.82e-01 120 chr2L:1619264-1619384 3.26e-01 120 chr3R:12543092-12543212 4.48e-01 120 chr2L:1637967-1638087 1.97e-01 120 chr3L:4445970-4446090 1.00e+00 120 chr3L:19910229-19910349 4.84e-03 64_[+1(1.89e-05)]_18_[+1(5.31e-05)]_\ 22 chr3L:17791641-17791761 9.95e-01 120 chr2R:22886489-22886609 5.52e-08 67_[+4(1.29e-06)]_3_[+1(7.13e-05)]_\ 7_[+3(1.63e-05)]_19 chr2R:15846367-15846487 7.90e-01 120 chr2L:413011-413131 1.95e-01 120 chr3R:26945400-26945520 1.16e-03 1_[+1(1.14e-05)]_62_[+3(7.51e-06)]_\ 41 chr3R:5563633-5563753 2.87e-04 55_[+1(8.26e-05)]_57 chr2R:23615227-23615347 2.35e-01 120 chr2R:22508207-22508327 3.71e-01 120 chr3L:19909394-19909514 2.63e-01 120 chr3R:22491525-22491645 1.64e-01 120 chr3R:5564977-5565097 5.30e-02 120 chrX:13320907-13321027 8.38e-01 120 chr3L:7367946-7368066 6.12e-01 120 chr3L:17949754-17949874 7.61e-01 120 chr3L:19263609-19263729 9.83e-01 120 chrX:13676620-13676740 9.89e-01 120 chrX:14593253-14593373 4.70e-02 120 chrX:18004295-18004415 8.35e-01 120 chr2R:17918893-17919013 5.75e-01 120 chr3R:28959266-28959386 6.12e-01 120 chr3R:18438853-18438973 5.20e-02 120 chr3L:3932868-3932988 2.32e-03 76_[+1(5.31e-05)]_36 chr2R:11202095-11202215 7.51e-01 120 chr2L:1048513-1048633 5.98e-01 120 chr3L:19940479-19940599 5.73e-01 120 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************