******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG32264.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:31878391-31878511 1.0000 120 chr3R:30295415-30295535 1.0000 120 chr3R:25760277-25760397 1.0000 120 chrX:10728151-10728271 1.0000 120 chr3L:11351831-11351951 1.0000 120 chr2L:15386908-15387028 1.0000 120 chr2R:6144345-6144465 1.0000 120 chrX:17121770-17121890 1.0000 120 chr3L:3246948-3247068 1.0000 120 chr3R:11640081-11640201 1.0000 120 chr3L:8371048-8371168 1.0000 120 chr3L:3785872-3785992 1.0000 120 chr2L:5231624-5231744 1.0000 120 chr3R:29283300-29283420 1.0000 120 chr2R:16720049-16720169 1.0000 120 chr3R:30454489-30454609 1.0000 120 chr3R:8670051-8670171 1.0000 120 chrX:9075540-9075660 1.0000 120 chr3R:13647620-13647740 1.0000 120 chr2R:23746119-23746239 1.0000 120 chr3R:29076152-29076272 1.0000 120 chr3L:5183322-5183442 1.0000 120 chr3R:6423054-6423174 1.0000 120 chrX:4435466-4435586 1.0000 120 chr3L:1741385-1741505 1.0000 120 chr3R:22727972-22728092 1.0000 120 chr2R:11098368-11098488 1.0000 120 chr3L:19897681-19897801 1.0000 120 chr3L:17431029-17431149 1.0000 120 chr2R:21312531-21312651 1.0000 120 chr2R:11206722-11206842 1.0000 120 chr3R:30171397-30171517 1.0000 120 chr2R:15513522-15513642 1.0000 120 chr3R:11614657-11614777 1.0000 120 chr2L:5904689-5904809 1.0000 120 chr2L:9698385-9698505 1.0000 120 chr2R:9839610-9839730 1.0000 120 chrX:2745346-2745466 1.0000 120 chr3R:20765860-20765980 1.0000 120 chr3L:16914246-16914366 1.0000 120 chr2R:11096413-11096533 1.0000 120 chr3R:31308974-31309094 1.0000 120 chr3L:14453387-14453507 1.0000 120 chr3L:1408286-1408406 1.0000 120 chr2L:10972374-10972494 1.0000 120 chr2R:20270953-20271073 1.0000 120 chr3R:17220036-17220156 1.0000 120 chr2R:14467026-14467146 1.0000 120 chr3L:3771293-3771413 1.0000 120 chr3R:10133721-10133841 1.0000 120 chr2R:6994676-6994796 1.0000 120 chr3R:19603169-19603289 1.0000 120 chr3R:30689746-30689866 1.0000 120 chr2L:94814-94934 1.0000 120 chr3R:9675125-9675245 1.0000 120 chr3L:3772849-3772969 1.0000 120 chr2R:20278869-20278989 1.0000 120 chr2L:21113746-21113866 1.0000 120 chr3L:225106-225226 1.0000 120 chr2L:5972166-5972286 1.0000 120 chr2R:21553770-21553890 1.0000 120 chr3R:22635847-22635967 1.0000 120 chrX:16917483-16917603 1.0000 120 chr2L:18509246-18509366 1.0000 120 chr3R:27171317-27171437 1.0000 120 chr3L:4357805-4357925 1.0000 120 chrX:13541344-13541464 1.0000 120 chr3L:764525-764645 1.0000 120 chr3L:14615306-14615426 1.0000 120 chr2R:23816153-23816273 1.0000 120 chr3R:18914116-18914236 1.0000 120 chr3L:8954175-8954295 1.0000 120 chr2L:13511277-13511397 1.0000 120 chr3L:1321295-1321415 1.0000 120 chr3L:758728-758848 1.0000 120 chr2L:21108304-21108424 1.0000 120 chrX:16800066-16800186 1.0000 120 chr2L:11328521-11328641 1.0000 120 chr3R:10588784-10588904 1.0000 120 chr2R:10212502-10212622 1.0000 120 chr3L:7792321-7792441 1.0000 120 chr3R:8845076-8845196 1.0000 120 chr2R:6145974-6146094 1.0000 120 chrX:2648076-2648196 1.0000 120 chr3R:22447426-22447546 1.0000 120 chr3L:3134249-3134369 1.0000 120 chr3L:5867071-5867191 1.0000 120 chr2L:3554062-3554182 1.0000 120 chrX:8410424-8410544 1.0000 120 chr3L:3240474-3240594 1.0000 120 chr2R:17635183-17635303 1.0000 120 chr3L:1683229-1683349 1.0000 120 chr2R:20136803-20136923 1.0000 120 chr3L:10868176-10868296 1.0000 120 chr3R:29787965-29788085 1.0000 120 chrX:6030149-6030269 1.0000 120 chr3L:6771385-6771505 1.0000 120 chr3R:20257054-20257174 1.0000 120 chr3L:11322578-11322698 1.0000 120 chr2L:13808151-13808271 1.0000 120 chr2L:8095307-8095427 1.0000 120 chr3L:4619943-4620063 1.0000 120 chr3R:10476112-10476232 1.0000 120 chr3L:17570149-17570269 1.0000 120 chr3L:12410920-12411040 1.0000 120 chr2R:6141509-6141629 1.0000 120 chr2R:9444520-9444640 1.0000 120 chr3R:5262301-5262421 1.0000 120 chr2R:7011751-7011871 1.0000 120 chr2L:12457263-12457383 1.0000 120 chr2L:13082310-13082430 1.0000 120 chr2R:12261502-12261622 1.0000 120 chr3R:21648663-21648783 1.0000 120 chr3L:5819406-5819526 1.0000 120 chr3L:16195503-16195623 1.0000 120 chr3L:9675577-9675697 1.0000 120 chr3L:13994464-13994584 1.0000 120 chr3L:14038358-14038478 1.0000 120 chr2R:19163971-19164091 1.0000 120 chr3R:29538587-29538707 1.0000 120 chrX:11146940-11147060 1.0000 120 chr3R:16482449-16482569 1.0000 120 chr2L:9438452-9438572 1.0000 120 chr2R:21522494-21522614 1.0000 120 chr2R:9915163-9915283 1.0000 120 chr2L:634358-634478 1.0000 120 chrX:17760714-17760834 1.0000 120 chrX:3437628-3437748 1.0000 120 chrX:6574614-6574734 1.0000 120 chr2R:17452020-17452140 1.0000 120 chr2L:423335-423455 1.0000 120 chr3R:24046833-24046953 1.0000 120 chrX:13278239-13278359 1.0000 120 chr3R:14765495-14765615 1.0000 120 chr2L:7992029-7992149 1.0000 120 chrX:12596525-12596645 1.0000 120 chr3R:14684074-14684194 1.0000 120 chr2L:7424384-7424504 1.0000 120 chr3L:6371552-6371672 1.0000 120 chrX:18834522-18834642 1.0000 120 chr2L:8229690-8229810 1.0000 120 chr3R:16154328-16154448 1.0000 120 chr2R:19849241-19849361 1.0000 120 chr3L:11711330-11711450 1.0000 120 chr3L:17947615-17947735 1.0000 120 chr2R:22729325-22729445 1.0000 120 chrX:13570427-13570547 1.0000 120 chr2L:12007125-12007245 1.0000 120 chr3R:23223616-23223736 1.0000 120 chr2R:18857970-18858090 1.0000 120 chrX:17490010-17490130 1.0000 120 chr3R:16996095-16996215 1.0000 120 chr3L:1031073-1031193 1.0000 120 chr3R:27186302-27186422 1.0000 120 chr3R:30281443-30281563 1.0000 120 chr2L:7909319-7909439 1.0000 120 chr3R:31059804-31059924 1.0000 120 chr3L:3420426-3420546 1.0000 120 chrX:8244427-8244547 1.0000 120 chr2L:6644670-6644790 1.0000 120 chr3R:20782789-20782909 1.0000 120 chrX:13754626-13754746 1.0000 120 chr2L:18707937-18708057 1.0000 120 chr3L:19630885-19631005 1.0000 120 chr3L:10738382-10738502 1.0000 120 chrX:13254623-13254743 1.0000 120 chr2L:9496614-9496734 1.0000 120 chrX:10718052-10718172 1.0000 120 chr3L:15532376-15532496 1.0000 120 chr2R:19647676-19647796 1.0000 120 chr2R:18288774-18288894 1.0000 120 chr2L:2858470-2858590 1.0000 120 chr3R:30280432-30280552 1.0000 120 chr3L:2549081-2549201 1.0000 120 chr3R:22034169-22034289 1.0000 120 chr3R:10579719-10579839 1.0000 120 chr2L:9890772-9890892 1.0000 120 chr3L:761820-761940 1.0000 120 chr3L:664042-664162 1.0000 120 chr3R:14709136-14709256 1.0000 120 chrX:1611972-1612092 1.0000 120 chr3L:7805494-7805614 1.0000 120 chr2R:12870135-12870255 1.0000 120 chr3R:25633985-25634105 1.0000 120 chr3L:10352206-10352326 1.0000 120 chr3L:8157231-8157351 1.0000 120 chrX:10927279-10927399 1.0000 120 chr2L:675060-675180 1.0000 120 chr3R:6426493-6426613 1.0000 120 chr3L:14055273-14055393 1.0000 120 chr2L:20647332-20647452 1.0000 120 chr2R:9691957-9692077 1.0000 120 chr3L:20432390-20432510 1.0000 120 chr3L:14239480-14239600 1.0000 120 chr2R:22179651-22179771 1.0000 120 chr2L:18150473-18150593 1.0000 120 chr3R:15596022-15596142 1.0000 120 chr2L:13882032-13882152 1.0000 120 chr3L:7783487-7783607 1.0000 120 chrX:3381120-3381240 1.0000 120 chr3L:14622568-14622688 1.0000 120 chr3L:17990238-17990358 1.0000 120 chr3R:17701260-17701380 1.0000 120 chr3R:19283661-19283781 1.0000 120 chrX:3689222-3689342 1.0000 120 chr2L:9938123-9938243 1.0000 120 chr3L:13497941-13498061 1.0000 120 chr2R:24964210-24964330 1.0000 120 chr2R:17452244-17452364 1.0000 120 chr3R:21630455-21630575 1.0000 120 chr3L:728043-728163 1.0000 120 chr3R:22175863-22175983 1.0000 120 chr3R:7793907-7794027 1.0000 120 chr3R:17119222-17119342 1.0000 120 chr2L:1668784-1668904 1.0000 120 chr3R:23888728-23888848 1.0000 120 chr3R:29062858-29062978 1.0000 120 chr3R:21875153-21875273 1.0000 120 chr2R:14577254-14577374 1.0000 120 chr3L:12411124-12411244 1.0000 120 chr3L:3389434-3389554 1.0000 120 chr2L:5003165-5003285 1.0000 120 chr3R:30811414-30811534 1.0000 120 chr3L:3395521-3395641 1.0000 120 chr2L:7420359-7420479 1.0000 120 chr3R:4873898-4874018 1.0000 120 chr3R:19165721-19165841 1.0000 120 chr2L:19905348-19905468 1.0000 120 chr3R:4403790-4403910 1.0000 120 chr3R:21837167-21837287 1.0000 120 chr3L:15514516-15514636 1.0000 120 chr3R:16229308-16229428 1.0000 120 chr3L:17972424-17972544 1.0000 120 chr3L:9381755-9381875 1.0000 120 chr3L:17502373-17502493 1.0000 120 chr3L:94169-94289 1.0000 120 chr2R:19620149-19620269 1.0000 120 chr3L:21058768-21058888 1.0000 120 chr2R:23659110-23659230 1.0000 120 chr2R:24548147-24548267 1.0000 120 chr3R:26235199-26235319 1.0000 120 chrX:21074454-21074574 1.0000 120 chr2L:5249924-5250044 1.0000 120 chr2L:19162917-19163037 1.0000 120 chr3R:8029753-8029873 1.0000 120 chr2L:8860006-8860126 1.0000 120 chr2R:19969836-19969956 1.0000 120 chr2R:12532863-12532983 1.0000 120 chrX:5044608-5044728 1.0000 120 chrX:3411926-3412046 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG32264/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG32264.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.313 C 0.186 G 0.184 T 0.317 Background letter frequencies (from file dataset with add-one prior applied): A 0.313 C 0.186 G 0.184 T 0.317 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCVGCWGC MEME-1 width = 8 sites = 32 llr = 292 E-value = 1.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCVGCWGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:3::5:: pos.-specific C :92:a::9 probability G 614a:1a1 matrix T ::1::3:: bits 2.4 ** * 2.2 ** ** 2.0 * ** ** 1.7 * ** ** Relative 1.5 * ** ** Entropy 1.2 ** ** ** (13.2 bits) 1.0 ** ** ** 0.7 ** ** ** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel GCGGCAGC consensus A A T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCVGCWGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17990238-17990358 39 2.31e-06 CTCACAACCA GCGGCAGC aaaaaaaaaa chrX:10927279-10927399 93 2.31e-06 agcaacaaca gcggcagc tacaacagca chr2R:21553770-21553890 11 4.65e-06 GACTGATGCT GCGGCTGC TGCCCAGCGG chr2L:12457263-12457383 34 6.98e-06 AACAGCGCCA GCCGCAGC CGCTGTTAGC chr2R:11098368-11098488 34 8.34e-06 CAATCAGCTG GCGGCGGC TTCGATTCGT chr3L:17972424-17972544 58 1.23e-05 AGCAGCGAGC ACGGCAGC GACTGCGGCG chr2R:9691957-9692077 35 1.23e-05 TGCAAACACA ACGGCAGC GAGCGATGCG chrX:8410424-8410544 83 1.23e-05 TGCAAGCGAG ACGGCAGC AGAGCTCCGC chrX:16917483-16917603 57 1.23e-05 AGCGTAGAAG ACGGCAGC TTGACTTTAT chrX:1611972-1612092 22 1.86e-05 tcgcaCTgct gccgctgc cgccgccgtc chr3L:14038358-14038478 14 1.86e-05 GCGAAATCAA GCAGCAGC TGTTGTGAAG chr3L:17570149-17570269 31 1.86e-05 TGGCTTTTAT GCCGCTGC CAACTTCGCT chr3L:10868176-10868296 43 1.86e-05 CATTTCGTTC GCCGCTGC AAttgttgtt chr3L:4357805-4357925 40 1.86e-05 ATCACCACCA GCAGCAGC AGTTACAAAT chrX:10728151-10728271 23 1.86e-05 GGTAGCAGTT GCAGCAGC AGCGGCTATA chr3R:17701260-17701380 8 3.42e-05 GACGGCA ACGGCGGC ACTGCCAGGC chrX:11146940-11147060 20 3.42e-05 CGGAAAACCC ACGGCGGC TCTGACCCAC chr3L:21058768-21058888 85 3.64e-05 AAGCTTCGTG GGGGCAGC ACACACGTCG chr2L:8860006-8860126 107 5.34e-05 AGACCCCGAA ACAGCAGC CGTCGA chr3R:20782789-20782909 95 5.34e-05 CACTTTTGTC GCTGCAGC TTTTTCGTGG chrX:12596525-12596645 10 5.34e-05 CTCTCCCTC ACCGCTGC TCCAATTTTT chr2R:6145974-6146094 8 5.34e-05 AGTGCAA Acagcagc gcagcaacaa chr3R:8670051-8670171 35 5.57e-05 AGTTTTTGAG GGGGCTGC TAAATACATA chr3L:3389434-3389554 16 6.65e-05 TGTGCGCTCG GCTGCTGC GCACGCGCTC chr3L:8157231-8157351 58 6.65e-05 TAAAATCTTT ACAGCTGC AATCTAACTA chr3L:10352206-10352326 50 6.65e-05 TTGCCTtgct gctgctgc ttctgcttta chr3R:30454489-30454609 44 6.65e-05 GCATTCATTC ACAGCTGC TCGAGTTTCT chr2R:22729325-22729445 41 7.12e-05 CCCAGAGATT GCGGCAGG TGAGCACAGC chr3R:13647620-13647740 51 7.12e-05 TTTTATTATT GCGGCAGG GCTCTATCTC chr2R:23659110-23659230 9 8.73e-05 ATTTAAAA ACAGCGGC TAATCATACA chr3R:16996095-16996215 5 1.00e-04 GCGT GGCGCTGC CAACCTGCTT chr3L:16195503-16195623 90 1.28e-04 ACACAAAATA AGCGCAGC CAATGGCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCVGCWGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17990238-17990358 2.3e-06 38_[+1]_74 chrX:10927279-10927399 2.3e-06 92_[+1]_20 chr2R:21553770-21553890 4.6e-06 10_[+1]_102 chr2L:12457263-12457383 7e-06 33_[+1]_79 chr2R:11098368-11098488 8.3e-06 33_[+1]_79 chr3L:17972424-17972544 1.2e-05 57_[+1]_55 chr2R:9691957-9692077 1.2e-05 34_[+1]_78 chrX:8410424-8410544 1.2e-05 82_[+1]_30 chrX:16917483-16917603 1.2e-05 56_[+1]_56 chrX:1611972-1612092 1.9e-05 21_[+1]_91 chr3L:14038358-14038478 1.9e-05 13_[+1]_99 chr3L:17570149-17570269 1.9e-05 30_[+1]_82 chr3L:10868176-10868296 1.9e-05 42_[+1]_70 chr3L:4357805-4357925 1.9e-05 39_[+1]_73 chrX:10728151-10728271 1.9e-05 22_[+1]_90 chr3R:17701260-17701380 3.4e-05 7_[+1]_105 chrX:11146940-11147060 3.4e-05 19_[+1]_93 chr3L:21058768-21058888 3.6e-05 84_[+1]_28 chr2L:8860006-8860126 5.3e-05 106_[+1]_6 chr3R:20782789-20782909 5.3e-05 94_[+1]_18 chrX:12596525-12596645 5.3e-05 9_[+1]_103 chr2R:6145974-6146094 5.3e-05 7_[+1]_105 chr3R:8670051-8670171 5.6e-05 34_[+1]_78 chr3L:3389434-3389554 6.7e-05 15_[+1]_97 chr3L:8157231-8157351 6.7e-05 57_[+1]_55 chr3L:10352206-10352326 6.7e-05 49_[+1]_63 chr3R:30454489-30454609 6.7e-05 43_[+1]_69 chr2R:22729325-22729445 7.1e-05 40_[+1]_72 chr3R:13647620-13647740 7.1e-05 50_[+1]_62 chr2R:23659110-23659230 8.7e-05 8_[+1]_104 chr3R:16996095-16996215 0.0001 4_[+1]_108 chr3L:16195503-16195623 0.00013 89_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCVGCWGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCVGCWGC width=8 seqs=32 chr3L:17990238-17990358 ( 39) GCGGCAGC 1 chrX:10927279-10927399 ( 93) GCGGCAGC 1 chr2R:21553770-21553890 ( 11) GCGGCTGC 1 chr2L:12457263-12457383 ( 34) GCCGCAGC 1 chr2R:11098368-11098488 ( 34) GCGGCGGC 1 chr3L:17972424-17972544 ( 58) ACGGCAGC 1 chr2R:9691957-9692077 ( 35) ACGGCAGC 1 chrX:8410424-8410544 ( 83) ACGGCAGC 1 chrX:16917483-16917603 ( 57) ACGGCAGC 1 chrX:1611972-1612092 ( 22) GCCGCTGC 1 chr3L:14038358-14038478 ( 14) GCAGCAGC 1 chr3L:17570149-17570269 ( 31) GCCGCTGC 1 chr3L:10868176-10868296 ( 43) GCCGCTGC 1 chr3L:4357805-4357925 ( 40) GCAGCAGC 1 chrX:10728151-10728271 ( 23) GCAGCAGC 1 chr3R:17701260-17701380 ( 8) ACGGCGGC 1 chrX:11146940-11147060 ( 20) ACGGCGGC 1 chr3L:21058768-21058888 ( 85) GGGGCAGC 1 chr2L:8860006-8860126 ( 107) ACAGCAGC 1 chr3R:20782789-20782909 ( 95) GCTGCAGC 1 chrX:12596525-12596645 ( 10) ACCGCTGC 1 chr2R:6145974-6146094 ( 8) ACAGCAGC 1 chr3R:8670051-8670171 ( 35) GGGGCTGC 1 chr3L:3389434-3389554 ( 16) GCTGCTGC 1 chr3L:8157231-8157351 ( 58) ACAGCTGC 1 chr3L:10352206-10352326 ( 50) GCTGCTGC 1 chr3R:30454489-30454609 ( 44) ACAGCTGC 1 chr2R:22729325-22729445 ( 41) GCGGCAGG 1 chr3R:13647620-13647740 ( 51) GCGGCAGG 1 chr2R:23659110-23659230 ( 9) ACAGCGGC 1 chr3R:16996095-16996215 ( 5) GGCGCTGC 1 chr3L:16195503-16195623 ( 90) AGCGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCVGCWGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 1.1e-005 38 -1164 169 -1164 -1164 223 -56 -1164 -32 23 125 -175 -1164 -1164 244 -1164 -1164 242 -1164 -1164 76 -1164 -56 12 -1164 -1164 244 -1164 -1164 233 -156 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCVGCWGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.1e-005 0.406250 0.000000 0.593750 0.000000 0.000000 0.875000 0.125000 0.000000 0.250000 0.218750 0.437500 0.093750 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.531250 0.000000 0.125000 0.343750 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.062500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCVGCWGC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]C[GAC]GC[AT]GC -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-2 width = 8 sites = 88 llr = 632 E-value = 2.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C :11::::: probability G ::2:3:1: matrix T a98a6a9a bits 2.4 2.2 2.0 1.7 * * * Relative 1.5 ** * * * Entropy 1.2 ** * *** (10.4 bits) 1.0 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7793907-7794027 53 1.02e-04 CAATTTTGTT TTTTTTTT TTAGTGAGCG chr2R:24964210-24964330 32 1.02e-04 ttttatttta tttttttt gtatttgttg chr2L:9938123-9938243 47 1.02e-04 AATTCTGGTA TTTTTTTT GATACGGTAT chr3R:6426493-6426613 34 1.02e-04 GTGTCTGTtt tttttttt tgttttcatt chr2L:675060-675180 103 1.02e-04 GCCACTGTGT TTTTTTTT TGCAGTGTTG chr3L:10352206-10352326 111 1.02e-04 ttttttttgg tttttttt tt chrX:13254623-13254743 75 1.02e-04 CATACGTACC TTTTTTTT CATTAATAAA chrX:12596525-12596645 24 1.02e-04 CTGCTCCAAT TTTTTTTT TCAAGAGAGT chr3R:24046833-24046953 86 1.02e-04 ATTTACAAAT TTTTTTTT GGGCCACTCA chr2L:423335-423455 74 1.02e-04 TGTACAGTTT TTTTTTTT CGAGTGTGAC chr3L:13994464-13994584 86 1.02e-04 CTTATCATCA TTTTTTTT GCCATGAAGT chr2R:12261502-12261622 53 1.02e-04 CAGCATTTCA TTTTTTTT TGCGCCTTGC chr2L:13082310-13082430 1 1.02e-04 . TTTTTTTT TTTGCTCTGT chr3R:10476112-10476232 76 1.02e-04 TTGTGTATTT TTTTTTTT CATAAAATTC chr3L:6771385-6771505 100 1.02e-04 CACTGTGCTC TTTTTTTT GTGTGTGGGT chr2R:17635183-17635303 54 1.02e-04 TTTCACAAGA TTTTTTTT TATGTTTCAG chr3L:14615306-14615426 95 1.02e-04 TCAAGTCAtt tttttttt atttatttat chr3L:225106-225226 52 1.02e-04 AATAAGTATA TTTTTTTT AGTTAAATTA chr3L:14453387-14453507 78 1.02e-04 TAATGACATA TTTTTTTT GTCCCGTGTA chrX:2745346-2745466 36 1.02e-04 ttttgcttta tttttttt ttgtttGGCT chr3R:30171397-30171517 33 1.02e-04 GGCTTTGTGT TTTTTTTT CAAGACGACT chr2R:11206722-11206842 88 1.02e-04 tatttattta tttttttt tttGCGGTCG chr3R:22727972-22728092 98 1.02e-04 GATGCTGATA TTTTTTTT ACAAACGTAC chr3R:6423054-6423174 68 1.02e-04 TTTATTATTA TTTTTTTT GCTGGCGCTT chr3R:13647620-13647740 76 1.02e-04 CTCTTAAATT TTTTTTTT TACCATTTTA chr3L:21058768-21058888 49 1.61e-04 CTCGCAGCAG TTTTGTTT GTGGCTCAGT chr3R:30811414-30811534 101 1.61e-04 AGTACATCGT TTTTGTTT TGAATTATTT chr3L:7805494-7805614 55 1.61e-04 GAGAATCtgt ttttgttt ttgtctggtt chr3R:30280432-30280552 61 1.61e-04 TTGTTATAAG TTTTGTTT AGCTTTTCCT chr2L:12007125-12007245 51 1.61e-04 Atgttgctgt ttttgttt tttgttgttg chr2R:9915163-9915283 83 1.61e-04 TCTTTTTTGT TTTTGTTT GCGCCTTTTC chr2R:9444520-9444640 60 1.61e-04 AAGACAAATA TTTTGTTT TCTGGGATCG chr2R:6141509-6141629 40 1.61e-04 ACGTCGGCCA TTTTGTTT TTACTTGTGT chr3L:10868176-10868296 102 1.61e-04 gttgttgttg ttttgttt atttattttt chr3L:8954175-8954295 38 1.61e-04 ATGTTCATGT TTTTGTTT TTTCCCGTGT chr3R:20765860-20765980 16 1.61e-04 TTATGCATCA TTTTGTTT TGTATTCGCA chr3R:11614657-11614777 53 1.61e-04 GACGCACAGC TTTTGTTT TCACATAGAA chr2R:21312531-21312651 73 1.61e-04 AGCAGCTGTT TTTTGTTT ACAAGCTTCG chr3R:30295415-30295535 102 1.61e-04 TTTCGCCGTG TTTTGTTT GTATTGGCAG chr3R:29062858-29062978 52 2.20e-04 AGCAATCTCT TTGTTTTT GTTGCTGCGT chr3L:764525-764645 105 2.20e-04 CACCAGCTCG TTGTTTTT GGGGCTGG chr2L:10972374-10972494 64 2.20e-04 CCGAATGAAA TTGTTTTT CAATCCTAAA chr3R:31308974-31309094 87 2.20e-04 ATTCAGTGGC TTGTTTTT ATGATCATTA chr2L:9698385-9698505 7 2.20e-04 TTCATA TTGTTTTT GTTCTCAGCG chr3L:19897681-19897801 20 2.20e-04 CTCGACGTTG TTGTTTTT TGTATTTTTG chrX:17121770-17121890 38 2.20e-04 TTATATGCTC TTGTTTTT CGCTGTGTAA chr2L:5249924-5250044 40 2.55e-04 CAACAAATGG TTGTGTTT TCAAAAAGAG chr3L:17947615-17947735 81 2.55e-04 GCATTTCGCG TTGTGTTT ATATTTGCCT chr3L:3785872-3785992 32 2.55e-04 ATATTTCAAT TTGTGTTT AATAGCTGGG chr2R:12532863-12532983 57 3.14e-04 CGAACTGCAC TTTTTTGT CTGTGTAACT chrX:3381120-3381240 103 3.14e-04 TAGCGAATAA TTTTTTGT CTCCAAGTGG chr3L:8157231-8157351 84 3.14e-04 TAAAAAAAAA TTTTTTGT ATATGCCACT chr3L:2549081-2549201 41 3.14e-04 CTTTAAGAGC TTTTTTGT CACATTGAAA chrX:17760714-17760834 113 3.14e-04 GTGTCTTTCT TTTTTTGT chr3R:8029753-8029873 20 4.15e-04 CATCACAATC TTTTATTT CTATTAATAA chr3R:21837167-21837287 60 4.15e-04 ATTTACTGCT TTTTATTT AACAAATGTT chr3R:22175863-22175983 77 4.15e-04 TTTAATAGGA TTTTATTT TGTAAAAATT chr2L:13882032-13882152 19 4.15e-04 TACTTATACT TTTTATTT CTCTAGCCGC chr3R:31059804-31059924 14 4.15e-04 ATGTACCGTT TTTTATTT GTATCTCCCA chr2L:3554062-3554182 103 4.15e-04 TTGACCCACA TTTTATTT CACTGTAAAC chr2R:6145974-6146094 87 4.15e-04 ACGATATATA TTTTATTT AGTACATACA chr3R:10588784-10588904 97 4.15e-04 TTTCTCTGTA TTTTATTT TGTATTTTTG chr2L:11328521-11328641 69 4.15e-04 CTAGTTTCAT TTTTATTT GCCTTTACCC chr2L:21108304-21108424 33 4.15e-04 CCGATGTGGA TTTTATTT TCCTAAATAT chr3L:3771293-3771413 52 4.15e-04 ATTATATTAT TTTTATTT CATTTTCTTT chrX:17490010-17490130 82 4.49e-04 ATAACAGCCT TTTTGTGT AACTAAAAGA chr3R:5262301-5262421 51 4.49e-04 CAGTAAATTA TTTTGTGT TCCTGGATGT chr2R:6994676-6994796 43 4.49e-04 ATTTTTGTAT TTTTGTGT TCTTTAGGTC chr3R:19165721-19165841 15 5.69e-04 AATATTCGCT TCTTTTTT CGCACACATG chr2L:7420359-7420479 52 5.69e-04 ACTTATCCAA TCTTTTTT GCGCTATACT chr3L:728043-728163 58 5.69e-04 GTGCATAAGA TCTTTTTT GCGAATGAAG chr3R:21630455-21630575 70 5.69e-04 AAGTTTCGCT TTCTTTTT GCACATCATT chr3L:761820-761940 113 5.69e-04 GGGACCCAAC TCTTTTTT chr3L:3420426-3420546 72 5.69e-04 tttcgcttcg tCTTTTTT ATGAATGAAA chr3R:16154328-16154448 89 5.69e-04 CTTGCTGCTG TTCTTTTT GCTGTGAATT chr3R:14684074-14684194 78 5.69e-04 GTTTACTCAT TTCTTTTT CTTATTTTCA chr3R:29538587-29538707 110 5.69e-04 CATACTTTAC TCTTTTTT TGA chr3L:5183322-5183442 52 5.69e-04 TAAATTATTC TTCTTTTT AAGATTGTAA chr2L:8860006-8860126 51 6.03e-04 GACACAATAT TTGTTTGT TTGCTTAACT chr2R:23746119-23746239 96 6.03e-04 GGTTAATCAC TTGTTTGT TTCGTTCCCT chr3R:4403790-4403910 79 6.61e-04 GGTTCTTAAT TTGTATTT CTCATTGAAC chr3R:27171317-27171437 47 6.61e-04 GATCTTGATA TTGTATTT GAGGAGAGCA chr3R:21875153-21875273 56 7.31e-04 AGCTGGCTCT TTCTGTTT TATATAGCCT chr2R:14577254-14577374 62 7.51e-04 ATGAGCCCGT TTGTGTGT GTGGAAAAAA chr2L:12457263-12457383 71 7.51e-04 atctgtgtgt ttgtgtgt gtatttcgta chr2R:18857970-18858090 4 9.03e-04 AGC TTTTTGTT GGCTTGTGGA chr2L:7992029-7992149 75 9.03e-04 AGCCTAATAA TTTTTGTT AAGCAAATCC chr3R:21648663-21648783 80 9.03e-04 TTTATGAAAA TTTTTGTT ACTATGCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7793907-7794027 0.0001 52_[+2]_60 chr2R:24964210-24964330 0.0001 31_[+2]_81 chr2L:9938123-9938243 0.0001 46_[+2]_66 chr3R:6426493-6426613 0.0001 33_[+2]_79 chr2L:675060-675180 0.0001 102_[+2]_10 chr3L:10352206-10352326 0.0001 110_[+2]_2 chrX:13254623-13254743 0.0001 74_[+2]_38 chrX:12596525-12596645 0.0001 23_[+2]_89 chr3R:24046833-24046953 0.0001 85_[+2]_27 chr2L:423335-423455 0.0001 73_[+2]_39 chr3L:13994464-13994584 0.0001 85_[+2]_27 chr2R:12261502-12261622 0.0001 52_[+2]_60 chr2L:13082310-13082430 0.0001 [+2]_112 chr3R:10476112-10476232 0.0001 75_[+2]_37 chr3L:6771385-6771505 0.0001 99_[+2]_13 chr2R:17635183-17635303 0.0001 53_[+2]_59 chr3L:14615306-14615426 0.0001 94_[+2]_18 chr3L:225106-225226 0.0001 51_[+2]_61 chr3L:14453387-14453507 0.0001 77_[+2]_35 chrX:2745346-2745466 0.0001 35_[+2]_77 chr3R:30171397-30171517 0.0001 32_[+2]_80 chr2R:11206722-11206842 0.0001 87_[+2]_25 chr3R:22727972-22728092 0.0001 97_[+2]_15 chr3R:6423054-6423174 0.0001 67_[+2]_45 chr3R:13647620-13647740 0.0001 75_[+2]_37 chr3L:21058768-21058888 0.00016 48_[+2]_64 chr3R:30811414-30811534 0.00016 100_[+2]_12 chr3L:7805494-7805614 0.00016 54_[+2]_58 chr3R:30280432-30280552 0.00016 60_[+2]_52 chr2L:12007125-12007245 0.00016 50_[+2]_62 chr2R:9915163-9915283 0.00016 82_[+2]_30 chr2R:9444520-9444640 0.00016 59_[+2]_53 chr2R:6141509-6141629 0.00016 39_[+2]_73 chr3L:10868176-10868296 0.00016 101_[+2]_11 chr3L:8954175-8954295 0.00016 37_[+2]_75 chr3R:20765860-20765980 0.00016 15_[+2]_97 chr3R:11614657-11614777 0.00016 52_[+2]_60 chr2R:21312531-21312651 0.00016 72_[+2]_40 chr3R:30295415-30295535 0.00016 101_[+2]_11 chr3R:29062858-29062978 0.00022 51_[+2]_61 chr3L:764525-764645 0.00022 104_[+2]_8 chr2L:10972374-10972494 0.00022 63_[+2]_49 chr3R:31308974-31309094 0.00022 86_[+2]_26 chr2L:9698385-9698505 0.00022 6_[+2]_106 chr3L:19897681-19897801 0.00022 19_[+2]_93 chrX:17121770-17121890 0.00022 37_[+2]_75 chr2L:5249924-5250044 0.00025 39_[+2]_73 chr3L:17947615-17947735 0.00025 80_[+2]_32 chr3L:3785872-3785992 0.00025 31_[+2]_81 chr2R:12532863-12532983 0.00031 56_[+2]_56 chrX:3381120-3381240 0.00031 102_[+2]_10 chr3L:8157231-8157351 0.00031 83_[+2]_29 chr3L:2549081-2549201 0.00031 40_[+2]_72 chrX:17760714-17760834 0.00031 112_[+2] chr3R:8029753-8029873 0.00041 19_[+2]_93 chr3R:21837167-21837287 0.00041 59_[+2]_53 chr3R:22175863-22175983 0.00041 76_[+2]_36 chr2L:13882032-13882152 0.00041 18_[+2]_94 chr3R:31059804-31059924 0.00041 13_[+2]_99 chr2L:3554062-3554182 0.00041 102_[+2]_10 chr2R:6145974-6146094 0.00041 86_[+2]_26 chr3R:10588784-10588904 0.00041 96_[+2]_16 chr2L:11328521-11328641 0.00041 68_[+2]_44 chr2L:21108304-21108424 0.00041 32_[+2]_80 chr3L:3771293-3771413 0.00041 51_[+2]_61 chrX:17490010-17490130 0.00045 81_[+2]_31 chr3R:5262301-5262421 0.00045 50_[+2]_62 chr2R:6994676-6994796 0.00045 42_[+2]_70 chr3R:19165721-19165841 0.00057 14_[+2]_98 chr2L:7420359-7420479 0.00057 51_[+2]_61 chr3L:728043-728163 0.00057 57_[+2]_55 chr3R:21630455-21630575 0.00057 69_[+2]_43 chr3L:761820-761940 0.00057 112_[+2] chr3L:3420426-3420546 0.00057 71_[+2]_41 chr3R:16154328-16154448 0.00057 88_[+2]_24 chr3R:14684074-14684194 0.00057 77_[+2]_35 chr3R:29538587-29538707 0.00057 109_[+2]_3 chr3L:5183322-5183442 0.00057 51_[+2]_61 chr2L:8860006-8860126 0.0006 50_[+2]_62 chr2R:23746119-23746239 0.0006 95_[+2]_17 chr3R:4403790-4403910 0.00066 78_[+2]_34 chr3R:27171317-27171437 0.00066 46_[+2]_66 chr3R:21875153-21875273 0.00073 55_[+2]_57 chr2R:14577254-14577374 0.00075 61_[+2]_51 chr2L:12457263-12457383 0.00075 70_[+2]_42 chr2R:18857970-18858090 0.0009 3_[+2]_109 chr2L:7992029-7992149 0.0009 74_[+2]_38 chr3R:21648663-21648783 0.0009 79_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=88 chr3R:7793907-7794027 ( 53) TTTTTTTT 1 chr2R:24964210-24964330 ( 32) TTTTTTTT 1 chr2L:9938123-9938243 ( 47) TTTTTTTT 1 chr3R:6426493-6426613 ( 34) TTTTTTTT 1 chr2L:675060-675180 ( 103) TTTTTTTT 1 chr3L:10352206-10352326 ( 111) TTTTTTTT 1 chrX:13254623-13254743 ( 75) TTTTTTTT 1 chrX:12596525-12596645 ( 24) TTTTTTTT 1 chr3R:24046833-24046953 ( 86) TTTTTTTT 1 chr2L:423335-423455 ( 74) TTTTTTTT 1 chr3L:13994464-13994584 ( 86) TTTTTTTT 1 chr2R:12261502-12261622 ( 53) TTTTTTTT 1 chr2L:13082310-13082430 ( 1) TTTTTTTT 1 chr3R:10476112-10476232 ( 76) TTTTTTTT 1 chr3L:6771385-6771505 ( 100) TTTTTTTT 1 chr2R:17635183-17635303 ( 54) TTTTTTTT 1 chr3L:14615306-14615426 ( 95) TTTTTTTT 1 chr3L:225106-225226 ( 52) TTTTTTTT 1 chr3L:14453387-14453507 ( 78) TTTTTTTT 1 chrX:2745346-2745466 ( 36) TTTTTTTT 1 chr3R:30171397-30171517 ( 33) TTTTTTTT 1 chr2R:11206722-11206842 ( 88) TTTTTTTT 1 chr3R:22727972-22728092 ( 98) TTTTTTTT 1 chr3R:6423054-6423174 ( 68) TTTTTTTT 1 chr3R:13647620-13647740 ( 76) TTTTTTTT 1 chr3L:21058768-21058888 ( 49) TTTTGTTT 1 chr3R:30811414-30811534 ( 101) TTTTGTTT 1 chr3L:7805494-7805614 ( 55) TTTTGTTT 1 chr3R:30280432-30280552 ( 61) TTTTGTTT 1 chr2L:12007125-12007245 ( 51) TTTTGTTT 1 chr2R:9915163-9915283 ( 83) TTTTGTTT 1 chr2R:9444520-9444640 ( 60) TTTTGTTT 1 chr2R:6141509-6141629 ( 40) TTTTGTTT 1 chr3L:10868176-10868296 ( 102) TTTTGTTT 1 chr3L:8954175-8954295 ( 38) TTTTGTTT 1 chr3R:20765860-20765980 ( 16) TTTTGTTT 1 chr3R:11614657-11614777 ( 53) TTTTGTTT 1 chr2R:21312531-21312651 ( 73) TTTTGTTT 1 chr3R:30295415-30295535 ( 102) TTTTGTTT 1 chr3R:29062858-29062978 ( 52) TTGTTTTT 1 chr3L:764525-764645 ( 105) TTGTTTTT 1 chr2L:10972374-10972494 ( 64) TTGTTTTT 1 chr3R:31308974-31309094 ( 87) TTGTTTTT 1 chr2L:9698385-9698505 ( 7) TTGTTTTT 1 chr3L:19897681-19897801 ( 20) TTGTTTTT 1 chrX:17121770-17121890 ( 38) TTGTTTTT 1 chr2L:5249924-5250044 ( 40) TTGTGTTT 1 chr3L:17947615-17947735 ( 81) TTGTGTTT 1 chr3L:3785872-3785992 ( 32) TTGTGTTT 1 chr2R:12532863-12532983 ( 57) TTTTTTGT 1 chrX:3381120-3381240 ( 103) TTTTTTGT 1 chr3L:8157231-8157351 ( 84) TTTTTTGT 1 chr3L:2549081-2549201 ( 41) TTTTTTGT 1 chrX:17760714-17760834 ( 113) TTTTTTGT 1 chr3R:8029753-8029873 ( 20) TTTTATTT 1 chr3R:21837167-21837287 ( 60) TTTTATTT 1 chr3R:22175863-22175983 ( 77) TTTTATTT 1 chr2L:13882032-13882152 ( 19) TTTTATTT 1 chr3R:31059804-31059924 ( 14) TTTTATTT 1 chr2L:3554062-3554182 ( 103) TTTTATTT 1 chr2R:6145974-6146094 ( 87) TTTTATTT 1 chr3R:10588784-10588904 ( 97) TTTTATTT 1 chr2L:11328521-11328641 ( 69) TTTTATTT 1 chr2L:21108304-21108424 ( 33) TTTTATTT 1 chr3L:3771293-3771413 ( 52) TTTTATTT 1 chrX:17490010-17490130 ( 82) TTTTGTGT 1 chr3R:5262301-5262421 ( 51) TTTTGTGT 1 chr2R:6994676-6994796 ( 43) TTTTGTGT 1 chr3R:19165721-19165841 ( 15) TCTTTTTT 1 chr2L:7420359-7420479 ( 52) TCTTTTTT 1 chr3L:728043-728163 ( 58) TCTTTTTT 1 chr3R:21630455-21630575 ( 70) TTCTTTTT 1 chr3L:761820-761940 ( 113) TCTTTTTT 1 chr3L:3420426-3420546 ( 72) TCTTTTTT 1 chr3R:16154328-16154448 ( 89) TTCTTTTT 1 chr3R:14684074-14684194 ( 78) TTCTTTTT 1 chr3R:29538587-29538707 ( 110) TCTTTTTT 1 chr3L:5183322-5183442 ( 52) TTCTTTTT 1 chr2L:8860006-8860126 ( 51) TTGTTTGT 1 chr2R:23746119-23746239 ( 96) TTGTTTGT 1 chr3R:4403790-4403910 ( 79) TTGTATTT 1 chr3R:27171317-27171437 ( 47) TTGTATTT 1 chr3R:21875153-21875273 ( 56) TTCTGTTT 1 chr2R:14577254-14577374 ( 62) TTGTGTGT 1 chr2L:12457263-12457383 ( 71) TTGTGTGT 1 chr2R:18857970-18858090 ( 4) TTTTTGTT 1 chr2L:7992029-7992149 ( 75) TTTTTGTT 1 chr3R:21648663-21648783 ( 80) TTTTTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.85841 E= 2.6e-003 -1310 -1310 -1310 166 -1310 -145 -1310 156 -1310 -171 -2 127 -1310 -1310 -1310 166 -108 -1310 50 90 -1310 -1310 -244 161 -1310 -1310 -44 145 -1310 -1310 -1310 166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 2.6e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.068182 0.000000 0.931818 0.000000 0.056818 0.181818 0.761364 0.000000 0.000000 0.000000 1.000000 0.147727 0.000000 0.261364 0.590909 0.000000 0.000000 0.034091 0.965909 0.000000 0.000000 0.136364 0.863636 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 regular expression -------------------------------------------------------------------------------- TTTT[TG]TTT -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CGACGTCG MEME-3 width = 8 sites = 11 llr = 116 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGACGTCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::::2 pos.-specific C a::9:17: probability G :a:1a::8 matrix T :::::93: bits 2.4 ** * 2.2 ** * 2.0 ** ** 1.7 ***** * Relative 1.5 ***** ** Entropy 1.2 ******** (15.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGACGTCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGTCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1611972-1612092 39 3.98e-06 ccgccgccgt cgacgtcg ctgcACTCCA chr3R:27186302-27186422 52 3.98e-06 ATGCGCATGC CGACGTCG ATGTCAACGG chr3L:17947615-17947735 23 3.98e-06 CGGCCGACTG CGACGTCG ACTGCAGGCC chr2R:6141509-6141629 28 3.98e-06 ATATTGCAGC CGACGTCG GCCATTTTGT chr2L:12007125-12007245 86 1.08e-05 AAAACACGGC CGACGTTG CCGTGCCGGT chr3L:3771293-3771413 29 1.08e-05 ACAACGCAGT CGACGTTG TCGTCATTAT chr3L:19897681-19897801 12 1.08e-05 ATTTTAGCCT CGACGTTG TTGTTTTTTG chr2L:5249924-5250044 104 1.31e-05 AACGAGGCGA CGACGCCG TTTGTCTGC chr3L:17972424-17972544 30 1.99e-05 AAAACGTTAA CGACGTCA GCAGAGGCAG chr3L:9675577-9675697 55 1.99e-05 aGAGCGAGCG CGACGTCA ATGGCAGCAG chr2L:9496614-9496734 95 2.38e-05 AAGTGAAATG CGAGGTCG GTGTGAAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGTCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1611972-1612092 4e-06 38_[+3]_74 chr3R:27186302-27186422 4e-06 51_[+3]_61 chr3L:17947615-17947735 4e-06 22_[+3]_90 chr2R:6141509-6141629 4e-06 27_[+3]_85 chr2L:12007125-12007245 1.1e-05 85_[+3]_27 chr3L:3771293-3771413 1.1e-05 28_[+3]_84 chr3L:19897681-19897801 1.1e-05 11_[+3]_101 chr2L:5249924-5250044 1.3e-05 103_[+3]_9 chr3L:17972424-17972544 2e-05 29_[+3]_83 chr3L:9675577-9675697 2e-05 54_[+3]_58 chr2L:9496614-9496734 2.4e-05 94_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGTCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGACGTCG width=8 seqs=11 chrX:1611972-1612092 ( 39) CGACGTCG 1 chr3R:27186302-27186422 ( 52) CGACGTCG 1 chr3L:17947615-17947735 ( 23) CGACGTCG 1 chr2R:6141509-6141629 ( 28) CGACGTCG 1 chr2L:12007125-12007245 ( 86) CGACGTTG 1 chr3L:3771293-3771413 ( 29) CGACGTTG 1 chr3L:19897681-19897801 ( 12) CGACGTTG 1 chr2L:5249924-5250044 ( 104) CGACGCCG 1 chr3L:17972424-17972544 ( 30) CGACGTCA 1 chr3L:9675577-9675697 ( 55) CGACGTCA 1 chr2L:9496614-9496734 ( 95) CGAGGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGTCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 2.1e+003 -1010 242 -1010 -1010 -1010 -1010 244 -1010 168 -1010 -1010 -1010 -1010 229 -102 -1010 -1010 -1010 244 -1010 -1010 -103 -1010 152 -1010 196 -1010 -21 -78 -1010 215 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGTCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.727273 0.000000 0.272727 0.181818 0.000000 0.818182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGACGTCG MEME-3 regular expression -------------------------------------------------------------------------------- CGACGT[CT]G -------------------------------------------------------------------------------- Time 19.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGGTGG MEME-4 width = 8 sites = 2 llr = 26 E-value = 2.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGGTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a::::: probability G :a:aa:aa matrix T :::::a:: bits 2.4 ***** ** 2.2 ***** ** 2.0 ***** ** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20782789-20782909 69 2.31e-06 GCTCTCCGCT CGCGGTGG TGTGCGTGCA chr2R:15513522-15513642 92 2.31e-06 GATGACTTCA CGCGGTGG ATGCCATGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20782789-20782909 2.3e-06 68_[+4]_44 chr2R:15513522-15513642 2.3e-06 91_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGGTGG width=8 seqs=2 chr3R:20782789-20782909 ( 69) CGCGGTGG 1 chr2R:15513522-15513642 ( 92) CGCGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.3e+004 -765 242 -765 -765 -765 -765 243 -765 -765 242 -765 -765 -765 -765 243 -765 -765 -765 243 -765 -765 -765 -765 165 -765 -765 243 -765 -765 -765 243 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.3e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGG MEME-4 regular expression -------------------------------------------------------------------------------- CGCGGTGG -------------------------------------------------------------------------------- Time 25.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGGTGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGGTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa::::: probability G a::aa:aa matrix T :::::a:: bits 2.4 ***** ** 2.2 ***** ** 2.0 ***** ** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:12007125-12007245 98 2.31e-06 ACGTTGCCGT GCCGGTGG TGCTGGGTGC chr3R:10133721-10133841 17 2.31e-06 AGCGAGTGCA GCCGGTGG TTGTGAGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12007125-12007245 2.3e-06 97_[+5]_15 chr3R:10133721-10133841 2.3e-06 16_[+5]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGGTGG width=8 seqs=2 chr2L:12007125-12007245 ( 98) GCCGGTGG 1 chr3R:10133721-10133841 ( 17) GCCGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.3e+004 -765 -765 243 -765 -765 242 -765 -765 -765 242 -765 -765 -765 -765 243 -765 -765 -765 243 -765 -765 -765 -765 165 -765 -765 243 -765 -765 -765 243 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGGTGG MEME-5 regular expression -------------------------------------------------------------------------------- GCCGGTGG -------------------------------------------------------------------------------- Time 31.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31878391-31878511 5.82e-01 120 chr3R:30295415-30295535 9.67e-02 120 chr3R:25760277-25760397 8.45e-01 120 chrX:10728151-10728271 3.11e-02 22_[+1(1.86e-05)]_90 chr3L:11351831-11351951 9.62e-01 120 chr2L:15386908-15387028 3.38e-01 120 chr2R:6144345-6144465 9.10e-01 120 chrX:17121770-17121890 8.61e-02 120 chr3L:3246948-3247068 9.99e-01 120 chr3R:11640081-11640201 8.21e-01 120 chr3L:8371048-8371168 9.42e-01 120 chr3L:3785872-3785992 5.06e-01 120 chr2L:5231624-5231744 8.76e-01 120 chr3R:29283300-29283420 7.25e-01 120 chr2R:16720049-16720169 9.76e-01 120 chr3R:30454489-30454609 1.92e-01 43_[+1(6.65e-05)]_69 chr3R:8670051-8670171 6.48e-02 34_[+1(5.57e-05)]_78 chrX:9075540-9075660 2.12e-01 120 chr3R:13647620-13647740 9.27e-03 50_[+1(7.12e-05)]_62 chr2R:23746119-23746239 1.58e-01 120 chr3R:29076152-29076272 9.71e-01 120 chr3L:5183322-5183442 6.72e-01 120 chr3R:6423054-6423174 2.15e-02 120 chrX:4435466-4435586 2.26e-01 120 chr3L:1741385-1741505 5.49e-01 120 chr3R:22727972-22728092 4.13e-01 120 chr2R:11098368-11098488 3.49e-04 33_[+1(8.34e-06)]_79 chr3L:19897681-19897801 2.34e-03 11_[+3(1.08e-05)]_101 chr3L:17431029-17431149 9.98e-01 120 chr2R:21312531-21312651 7.92e-02 120 chr2R:11206722-11206842 2.97e-02 120 chr3R:30171397-30171517 2.79e-01 120 chr2R:15513522-15513642 5.67e-03 91_[+4(2.31e-06)]_21 chr3R:11614657-11614777 4.92e-01 120 chr2L:5904689-5904809 2.59e-01 120 chr2L:9698385-9698505 3.56e-01 120 chr2R:9839610-9839730 5.47e-01 120 chrX:2745346-2745466 6.92e-02 120 chr3R:20765860-20765980 8.56e-03 120 chr3L:16914246-16914366 6.91e-01 120 chr2R:11096413-11096533 4.21e-01 120 chr3R:31308974-31309094 1.83e-01 120 chr3L:14453387-14453507 3.70e-01 120 chr3L:1408286-1408406 4.99e-01 120 chr2L:10972374-10972494 1.99e-01 120 chr2R:20270953-20271073 2.76e-01 120 chr3R:17220036-17220156 9.77e-01 120 chr2R:14467026-14467146 8.33e-01 120 chr3L:3771293-3771413 2.32e-03 28_[+3(1.08e-05)]_84 chr3R:10133721-10133841 7.92e-04 16_[+5(2.31e-06)]_96 chr2R:6994676-6994796 4.63e-01 120 chr3R:19603169-19603289 5.70e-01 120 chr3R:30689746-30689866 9.10e-01 120 chr2L:94814-94934 7.43e-01 120 chr3R:9675125-9675245 9.94e-01 120 chr3L:3772849-3772969 5.20e-01 120 chr2R:20278869-20278989 2.17e-01 120 chr2L:21113746-21113866 6.66e-01 120 chr3L:225106-225226 1.94e-02 120 chr2L:5972166-5972286 5.46e-01 120 chr2R:21553770-21553890 1.37e-02 10_[+1(4.65e-06)]_102 chr3R:22635847-22635967 4.49e-01 120 chrX:16917483-16917603 3.84e-03 56_[+1(1.23e-05)]_56 chr2L:18509246-18509366 9.99e-01 120 chr3R:27171317-27171437 4.28e-01 120 chr3L:4357805-4357925 1.25e-01 39_[+1(1.86e-05)]_48_[+1(6.65e-05)]_\ 17 chrX:13541344-13541464 6.58e-01 120 chr3L:764525-764645 6.40e-02 120 chr3L:14615306-14615426 3.75e-01 120 chr2R:23816153-23816273 9.23e-01 120 chr3R:18914116-18914236 1.00e+00 120 chr3L:8954175-8954295 4.67e-01 120 chr2L:13511277-13511397 4.93e-01 120 chr3L:1321295-1321415 1.64e-01 120 chr3L:758728-758848 2.37e-01 120 chr2L:21108304-21108424 1.51e-01 120 chrX:16800066-16800186 1.62e-01 120 chr2L:11328521-11328641 3.26e-01 120 chr3R:10588784-10588904 6.49e-01 120 chr2R:10212502-10212622 3.01e-01 120 chr3L:7792321-7792441 9.85e-01 120 chr3R:8845076-8845196 1.00e+00 120 chr2R:6145974-6146094 1.68e-02 7_[+1(5.34e-05)]_105 chrX:2648076-2648196 9.88e-02 55_[+4(7.88e-05)]_57 chr3R:22447426-22447546 9.69e-02 93_[+5(7.88e-05)]_19 chr3L:3134249-3134369 7.41e-01 120 chr3L:5867071-5867191 9.19e-01 120 chr2L:3554062-3554182 3.95e-01 120 chrX:8410424-8410544 3.41e-02 82_[+1(1.23e-05)]_30 chr3L:3240474-3240594 7.69e-01 120 chr2R:17635183-17635303 1.16e-01 120 chr3L:1683229-1683349 9.45e-01 120 chr2R:20136803-20136923 5.52e-01 120 chr3L:10868176-10868296 3.77e-04 42_[+1(1.86e-05)]_70 chr3R:29787965-29788085 3.90e-01 120 chrX:6030149-6030269 3.94e-01 120 chr3L:6771385-6771505 2.45e-01 120 chr3R:20257054-20257174 7.91e-01 120 chr3L:11322578-11322698 6.73e-01 120 chr2L:13808151-13808271 8.29e-02 51_[+5(7.88e-05)]_61 chr2L:8095307-8095427 9.52e-01 120 chr3L:4619943-4620063 9.25e-01 120 chr3R:10476112-10476232 4.62e-01 120 chr3L:17570149-17570269 8.31e-03 30_[+1(1.86e-05)]_82 chr3L:12410920-12411040 7.02e-01 120 chr2R:6141509-6141629 6.38e-04 27_[+3(3.98e-06)]_85 chr2R:9444520-9444640 1.45e-01 120 chr3R:5262301-5262421 3.03e-01 120 chr2R:7011751-7011871 3.95e-01 120 chr2L:12457263-12457383 7.72e-04 33_[+1(6.98e-06)]_79 chr2L:13082310-13082430 1.99e-01 120 chr2R:12261502-12261622 5.71e-02 120 chr3R:21648663-21648783 6.93e-01 120 chr3L:5819406-5819526 9.97e-01 120 chr3L:16195503-16195623 1.03e-01 120 chr3L:9675577-9675697 2.26e-02 54_[+3(1.99e-05)]_58 chr3L:13994464-13994584 3.00e-02 44_[+3(5.90e-05)]_68 chr3L:14038358-14038478 1.45e-02 13_[+1(1.86e-05)]_99 chr2R:19163971-19164091 4.60e-01 120 chr3R:29538587-29538707 8.29e-01 120 chrX:11146940-11147060 6.30e-03 19_[+1(3.42e-05)]_93 chr3R:16482449-16482569 1.30e-01 33_[+5(7.88e-05)]_79 chr2L:9438452-9438572 9.95e-01 120 chr2R:21522494-21522614 7.65e-01 120 chr2R:9915163-9915283 5.57e-02 120 chr2L:634358-634478 7.82e-01 120 chrX:17760714-17760834 6.55e-01 120 chrX:3437628-3437748 8.45e-01 120 chrX:6574614-6574734 8.38e-01 120 chr2R:17452020-17452140 6.44e-01 120 chr2L:423335-423455 2.14e-01 120 chr3R:24046833-24046953 4.80e-01 120 chrX:13278239-13278359 7.78e-01 120 chr3R:14765495-14765615 7.60e-02 120 chr2L:7992029-7992149 7.05e-01 120 chrX:12596525-12596645 2.62e-03 9_[+1(5.34e-05)]_103 chr3R:14684074-14684194 3.56e-01 120 chr2L:7424384-7424504 7.43e-01 120 chr3L:6371552-6371672 3.53e-01 120 chrX:18834522-18834642 6.69e-01 120 chr2L:8229690-8229810 6.15e-01 120 chr3R:16154328-16154448 2.58e-01 120 chr2R:19849241-19849361 9.92e-01 120 chr3L:11711330-11711450 8.93e-01 120 chr3L:17947615-17947735 8.07e-05 22_[+3(3.98e-06)]_90 chr2R:22729325-22729445 6.75e-03 40_[+1(7.12e-05)]_72 chrX:13570427-13570547 1.23e-01 43_[+3(6.57e-05)]_69 chr2L:12007125-12007245 4.49e-07 85_[+3(1.08e-05)]_4_[+5(2.31e-06)]_\ 15 chr3R:23223616-23223736 5.64e-01 120 chr2R:18857970-18858090 3.84e-01 120 chrX:17490010-17490130 7.25e-01 120 chr3R:16996095-16996215 7.12e-02 120 chr3L:1031073-1031193 3.89e-01 120 chr3R:27186302-27186422 1.68e-03 32_[+3(9.79e-05)]_11_[+3(3.98e-06)]_\ 61 chr3R:30281443-30281563 6.91e-01 120 chr2L:7909319-7909439 1.45e-01 120 chr3R:31059804-31059924 7.88e-01 120 chr3L:3420426-3420546 8.15e-02 120 chrX:8244427-8244547 5.08e-01 120 chr2L:6644670-6644790 5.24e-01 120 chr3R:20782789-20782909 8.27e-05 68_[+4(2.31e-06)]_18_[+1(5.34e-05)]_\ 18 chrX:13754626-13754746 3.16e-02 120 chr2L:18707937-18708057 6.56e-01 120 chr3L:19630885-19631005 3.66e-03 120 chr3L:10738382-10738502 3.96e-01 120 chrX:13254623-13254743 1.10e-01 120 chr2L:9496614-9496734 8.19e-03 94_[+3(2.38e-05)]_18 chrX:10718052-10718172 8.41e-01 120 chr3L:15532376-15532496 2.62e-01 120 chr2R:19647676-19647796 8.97e-01 120 chr2R:18288774-18288894 1.48e-02 120 chr2L:2858470-2858590 1.60e-01 65_[+4(7.88e-05)]_47 chr3R:30280432-30280552 5.10e-02 120 chr3L:2549081-2549201 5.62e-01 120 chr3R:22034169-22034289 9.13e-01 120 chr3R:10579719-10579839 8.82e-01 120 chr2L:9890772-9890892 8.79e-01 120 chr3L:761820-761940 7.24e-01 120 chr3L:664042-664162 3.99e-01 120 chr3R:14709136-14709256 2.38e-01 120 chrX:1611972-1612092 8.19e-05 21_[+1(1.86e-05)]_9_[+3(3.98e-06)]_\ 74 chr3L:7805494-7805614 4.09e-01 120 chr2R:12870135-12870255 7.84e-01 120 chr3R:25633985-25634105 8.95e-01 120 chr3L:10352206-10352326 8.34e-03 46_[+1(6.65e-05)]_66 chr3L:8157231-8157351 7.07e-02 57_[+1(6.65e-05)]_55 chrX:10927279-10927399 1.24e-02 29_[+1(8.73e-05)]_4_[+1(1.23e-05)]_\ 7_[+1(5.34e-05)]_10_[+1(2.65e-05)]_10_[+1(2.31e-06)]_20 chr2L:675060-675180 8.76e-02 120 chr3R:6426493-6426613 2.34e-01 120 chr3L:14055273-14055393 8.34e-01 120 chr2L:20647332-20647452 5.18e-01 120 chr2R:9691957-9692077 9.16e-02 34_[+1(1.23e-05)]_78 chr3L:20432390-20432510 9.92e-01 120 chr3L:14239480-14239600 7.57e-01 120 chr2R:22179651-22179771 1.33e-01 120 chr2L:18150473-18150593 3.02e-01 120 chr3R:15596022-15596142 9.55e-01 120 chr2L:13882032-13882152 1.67e-01 120 chr3L:7783487-7783607 6.79e-01 120 chrX:3381120-3381240 5.79e-01 120 chr3L:14622568-14622688 7.93e-01 120 chr3L:17990238-17990358 1.68e-02 38_[+1(2.31e-06)]_74 chr3R:17701260-17701380 6.59e-03 7_[+1(3.42e-05)]_105 chr3R:19283661-19283781 9.83e-01 120 chrX:3689222-3689342 6.33e-01 120 chr2L:9938123-9938243 4.51e-02 120 chr3L:13497941-13498061 1.57e-02 120 chr2R:24964210-24964330 3.26e-03 120 chr2R:17452244-17452364 9.91e-01 120 chr3R:21630455-21630575 5.27e-01 120 chr3L:728043-728163 4.76e-01 120 chr3R:22175863-22175983 7.41e-01 120 chr3R:7793907-7794027 3.14e-02 120 chr3R:17119222-17119342 9.93e-01 120 chr2L:1668784-1668904 8.88e-02 120 chr3R:23888728-23888848 9.55e-01 120 chr3R:29062858-29062978 1.84e-01 120 chr3R:21875153-21875273 6.22e-01 120 chr2R:14577254-14577374 5.89e-01 120 chr3L:12411124-12411244 2.95e-01 120 chr3L:3389434-3389554 7.91e-03 15_[+1(6.65e-05)]_97 chr2L:5003165-5003285 8.99e-01 120 chr3R:30811414-30811534 3.80e-01 120 chr3L:3395521-3395641 3.01e-03 120 chr2L:7420359-7420479 3.02e-01 120 chr3R:4873898-4874018 9.65e-01 120 chr3R:19165721-19165841 1.31e-01 120 chr2L:19905348-19905468 9.97e-01 120 chr3R:4403790-4403910 3.24e-01 120 chr3R:21837167-21837287 7.36e-01 120 chr3L:15514516-15514636 3.42e-01 120 chr3R:16229308-16229428 2.42e-01 120 chr3L:17972424-17972544 2.95e-06 29_[+3(1.99e-05)]_20_[+1(1.23e-05)]_\ 6_[+4(7.88e-05)]_41 chr3L:9381755-9381875 9.01e-03 120 chr3L:17502373-17502493 9.89e-01 120 chr3L:94169-94289 9.60e-01 120 chr2R:19620149-19620269 1.00e+00 120 chr3L:21058768-21058888 1.03e-03 84_[+1(3.64e-05)]_28 chr2R:23659110-23659230 2.83e-01 8_[+1(8.73e-05)]_104 chr2R:24548147-24548267 6.95e-01 120 chr3R:26235199-26235319 6.43e-01 120 chrX:21074454-21074574 7.02e-01 120 chr2L:5249924-5250044 1.67e-03 103_[+3(1.31e-05)]_9 chr2L:19162917-19163037 3.40e-01 120 chr3R:8029753-8029873 7.07e-01 120 chr2L:8860006-8860126 7.30e-04 1_[+5(7.88e-05)]_97_[+1(5.34e-05)]_\ 6 chr2R:19969836-19969956 6.74e-01 120 chr2R:12532863-12532983 4.99e-02 120 chrX:5044608-5044728 8.18e-01 120 chrX:3411926-3412046 9.99e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************