******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3163.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:16073253-16073373 1.0000 120 chr4:893640-893760 1.0000 120 chr2L:20829732-20829852 1.0000 120 chr3R:30552812-30552932 1.0000 120 chr3L:22960454-22960574 1.0000 120 chr2L:17621335-17621455 1.0000 120 chr3R:14065826-14065946 1.0000 120 chr3L:4073901-4074021 1.0000 120 chr2R:14814364-14814484 1.0000 120 chr3L:19482133-19482253 1.0000 120 chr3R:14580219-14580339 1.0000 120 chr3L:22788069-22788189 1.0000 120 chr3R:13538854-13538974 1.0000 120 chr2L:9446784-9446904 1.0000 120 chr2R:13620441-13620561 1.0000 120 chr2L:16794125-16794245 1.0000 120 chr3R:4077787-4077907 1.0000 120 chr2R:11231924-11232044 1.0000 120 chrX:13395093-13395213 1.0000 120 chr2L:13113752-13113872 1.0000 120 chr3R:12367619-12367739 1.0000 120 chr2L:5659268-5659388 1.0000 120 chr3R:22698372-22698492 1.0000 120 chr2L:16852348-16852468 1.0000 120 chr3L:2169085-2169205 1.0000 120 chr2L:7832868-7832988 1.0000 120 chr2L:7243763-7243883 1.0000 120 chr2L:19918006-19918126 1.0000 120 chr2L:11879077-11879197 1.0000 120 chr3L:3749618-3749738 1.0000 120 chr3L:13667879-13667999 1.0000 120 chr2L:3426026-3426146 1.0000 120 chr3R:15077362-15077482 1.0000 120 chr3R:18931876-18931996 1.0000 120 chr3R:16876790-16876910 1.0000 120 chr2R:7545066-7545186 1.0000 120 chr3L:22034848-22034968 1.0000 120 chr3R:7753695-7753815 1.0000 120 chr3L:21994122-21994242 1.0000 120 chr2R:15390252-15390372 1.0000 120 chr3R:27075748-27075868 1.0000 120 chr2R:18405991-18406111 1.0000 120 chr3L:17211698-17211818 1.0000 120 chr3L:5537563-5537683 1.0000 120 chr3L:10187014-10187134 1.0000 120 chr2R:8407898-8408018 1.0000 120 chr3R:13554192-13554312 1.0000 120 chr3R:17920415-17920535 1.0000 120 chr2L:8346424-8346544 1.0000 120 chr2R:12044990-12045110 1.0000 120 chr2L:19917109-19917229 1.0000 120 chrX:2324020-2324140 1.0000 120 chr3L:7189787-7189907 1.0000 120 chrX:7695742-7695862 1.0000 120 chr3L:16935576-16935696 1.0000 120 chr2R:19380372-19380492 1.0000 120 chr2R:18406874-18406994 1.0000 120 chr2L:11904308-11904428 1.0000 120 chr2L:21618057-21618177 1.0000 120 chr3L:5902505-5902625 1.0000 120 chr2R:13926903-13927023 1.0000 120 chr3R:22124207-22124327 1.0000 120 chr3R:22124915-22125035 1.0000 120 chrX:18665865-18665985 1.0000 120 chr3L:7743117-7743237 1.0000 120 chr2L:3730306-3730426 1.0000 120 chr3L:12788601-12788721 1.0000 120 chr2R:8444194-8444314 1.0000 120 chr2R:11116554-11116674 1.0000 120 chr3R:18621332-18621452 1.0000 120 chr3L:16452074-16452194 1.0000 120 chr2L:6941902-6942022 1.0000 120 chr3L:11428516-11428636 1.0000 120 chr3R:24485137-24485257 1.0000 120 chr3L:3280093-3280213 1.0000 120 chr2L:10208985-10209105 1.0000 120 chr2L:15332709-15332829 1.0000 120 chr3R:31168532-31168652 1.0000 120 chr2R:11107599-11107719 1.0000 120 chr2R:15610013-15610133 1.0000 120 chr2L:22117805-22117925 1.0000 120 chr3L:13934970-13935090 1.0000 120 chr3R:31499047-31499167 1.0000 120 chr2L:20824530-20824650 1.0000 120 chr2R:12566145-12566265 1.0000 120 chr2L:16234163-16234283 1.0000 120 chr3L:7787937-7788057 1.0000 120 chrX:7695942-7696062 1.0000 120 chr3R:6958574-6958694 1.0000 120 chr2L:7855309-7855429 1.0000 120 chr3L:3746716-3746836 1.0000 120 chrX:10333506-10333626 1.0000 120 chr2R:14449082-14449202 1.0000 120 chr2L:11903561-11903681 1.0000 120 chr3R:5199694-5199814 1.0000 120 chr2R:5990208-5990328 1.0000 120 chr3L:22998329-22998449 1.0000 120 chr3R:11483470-11483590 1.0000 120 chr2L:14300839-14300959 1.0000 120 chr3L:7716423-7716543 1.0000 120 chr3L:15494979-15495099 1.0000 120 chr2L:8433649-8433769 1.0000 120 chr2L:14180791-14180911 1.0000 120 chr3R:20564081-20564201 1.0000 120 chr2R:16579535-16579655 1.0000 120 chr3R:17366308-17366428 1.0000 120 chr3R:19503399-19503519 1.0000 120 chrX:12389258-12389378 1.0000 120 chr3L:2400392-2400512 1.0000 120 chr2L:20242902-20243022 1.0000 120 chr2R:10918379-10918499 1.0000 120 chr2L:13035922-13036042 1.0000 120 chr2L:7887245-7887365 1.0000 120 chr3R:29215810-29215930 1.0000 120 chr3R:4083775-4083895 1.0000 120 chr3R:9979116-9979236 1.0000 120 chr3R:13402034-13402154 1.0000 120 chrX:5418642-5418762 1.0000 120 chr2R:14882068-14882188 1.0000 120 chr2L:18395398-18395518 1.0000 120 chr2R:7544329-7544449 1.0000 120 chr2L:790759-790879 1.0000 120 chr3L:17238431-17238551 1.0000 120 chr3R:13789772-13789892 1.0000 120 chr2R:11930322-11930442 1.0000 120 chrX:12202898-12203018 1.0000 120 chr3R:11694794-11694914 1.0000 120 chr2R:18407828-18407948 1.0000 120 chr2L:16234908-16235028 1.0000 120 chr3L:1275812-1275932 1.0000 120 chrX:7697394-7697514 1.0000 120 chr2R:22647720-22647840 1.0000 120 chr2L:14038913-14039033 1.0000 120 chr2L:4995523-4995643 1.0000 120 chr3R:7658168-7658288 1.0000 120 chr3R:16128634-16128754 1.0000 120 chr3R:27223167-27223287 1.0000 120 chr4:555083-555203 1.0000 120 chr3R:11980347-11980467 1.0000 120 chr3R:16502693-16502813 1.0000 120 chr2L:22145636-22145756 1.0000 120 chr3R:20484606-20484726 1.0000 120 chr2L:7608186-7608306 1.0000 120 chr3L:4062076-4062196 1.0000 120 chr2L:2279527-2279647 1.0000 120 chr3R:18481865-18481985 1.0000 120 chr2L:21141872-21141992 1.0000 120 chr2L:13878099-13878219 1.0000 120 chr2R:11757733-11757853 1.0000 120 chr3L:21319450-21319570 1.0000 120 chrX:278068-278188 1.0000 120 chr2R:8722473-8722593 1.0000 120 chr3R:16933464-16933584 1.0000 120 chr3L:17549332-17549452 1.0000 120 chrX:20083890-20084010 1.0000 120 chrX:12085827-12085947 1.0000 120 chr2R:10383606-10383726 1.0000 120 chr3R:24895010-24895130 1.0000 120 chr3R:23605623-23605743 1.0000 120 chrX:20062847-20062967 1.0000 120 chr2R:18401886-18402006 1.0000 120 chr2L:18156019-18156139 1.0000 120 chr3R:17505942-17506062 1.0000 120 chr2L:5030644-5030764 1.0000 120 chr2L:5145260-5145380 1.0000 120 chrX:5744477-5744597 1.0000 120 chr3L:2170878-2170998 1.0000 120 chr3R:31119897-31120017 1.0000 120 chr3R:14064717-14064837 1.0000 120 chr2L:22148842-22148962 1.0000 120 chr3R:25735687-25735807 1.0000 120 chr3L:2322513-2322633 1.0000 120 chr2R:10225302-10225422 1.0000 120 chr3L:3747423-3747543 1.0000 120 chr2R:15600406-15600526 1.0000 120 chr2L:7887447-7887567 1.0000 120 chr3R:25331155-25331275 1.0000 120 chr2L:3757116-3757236 1.0000 120 chr3R:4130371-4130491 1.0000 120 chr2L:245760-245880 1.0000 120 chr2R:15485183-15485303 1.0000 120 chr3R:6593321-6593441 1.0000 120 chr2R:23683332-23683452 1.0000 120 chr2R:18407080-18407200 1.0000 120 chr2R:9684565-9684685 1.0000 120 chr3L:4625543-4625663 1.0000 120 chr2L:4441473-4441593 1.0000 120 chrX:10801228-10801348 1.0000 120 chr3L:13840873-13840993 1.0000 120 chr3R:7306837-7306957 1.0000 120 chr3R:30545149-30545269 1.0000 120 chrX:7092016-7092136 1.0000 120 chr2R:16335913-16336033 1.0000 120 chr2L:13036126-13036246 1.0000 120 chrX:17871162-17871282 1.0000 120 chr2R:21361997-21362117 1.0000 120 chr3R:7310721-7310841 1.0000 120 chr3R:13815155-13815275 1.0000 120 chrX:14082882-14083002 1.0000 120 chrX:5282169-5282289 1.0000 120 chr2R:7888206-7888326 1.0000 120 chr2L:16231412-16231532 1.0000 120 chr2R:17794282-17794402 1.0000 120 chr2L:16520555-16520675 1.0000 120 chr3R:5716808-5716928 1.0000 120 chr2L:14054474-14054594 1.0000 120 chr2R:18404476-18404596 1.0000 120 chr2R:8131808-8131928 1.0000 120 chr2R:11107817-11107937 1.0000 120 chr3R:11172972-11173092 1.0000 120 chr3L:15494021-15494141 1.0000 120 chr3R:16899107-16899227 1.0000 120 chr3R:12080738-12080858 1.0000 120 chr3L:2107561-2107681 1.0000 120 chr2R:15400914-15401034 1.0000 120 chr2L:6742101-6742221 1.0000 120 chr3L:180145-180265 1.0000 120 chr2R:10134824-10134944 1.0000 120 chr3R:5670170-5670290 1.0000 120 chr2L:19809790-19809910 1.0000 120 chr2R:11756483-11756603 1.0000 120 chr3R:13796759-13796879 1.0000 120 chr2L:13084518-13084638 1.0000 120 chr3L:11247920-11248040 1.0000 120 chr2L:3648514-3648634 1.0000 120 chr3R:6460765-6460885 1.0000 120 chr3L:17914109-17914229 1.0000 120 chr3L:9501461-9501581 1.0000 120 chr3R:30387480-30387600 1.0000 120 chrX:3684921-3685041 1.0000 120 chr2R:19691960-19692080 1.0000 120 chrX:4840699-4840819 1.0000 120 chr3R:25783205-25783325 1.0000 120 chrX:19788218-19788338 1.0000 120 chr3R:17506930-17507050 1.0000 120 chr3R:19486281-19486401 1.0000 120 chr2R:11662803-11662923 1.0000 120 chr3R:25316089-25316209 1.0000 120 chr3R:29829529-29829649 1.0000 120 chr3R:4236535-4236655 1.0000 120 chr3L:882967-883087 1.0000 120 chr3L:10186123-10186243 1.0000 120 chr3R:8523659-8523779 1.0000 120 chr3R:13208584-13208704 1.0000 120 chr2L:6792154-6792274 1.0000 120 chr3R:6474534-6474654 1.0000 120 chr2R:8272838-8272958 1.0000 120 chr3R:7993652-7993772 1.0000 120 chr3R:25759503-25759623 1.0000 120 chr3R:19495316-19495436 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG3163/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3163.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.223 G 0.23 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.223 G 0.23 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAGAGARH MEME-1 width = 8 sites = 162 llr = 1301 E-value = 2.4e-140 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGAGARH MEME-1 Description -------------------------------------------------------------------------------- Simplified A aa1a:844 pos.-specific C :::::2:3 probability G ::9:a:5: matrix T :::::::2 bits 2.2 * 2.0 * 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ****** (11.6 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AAGAGAGA consensus CAC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAGARH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6474534-6474654 62 2.06e-05 ACGAAAGGCG AAGAGAGA TAGAAAGCGA chr3R:19486281-19486401 38 2.06e-05 AGTGGGTCAG AAGAGAGA TCGTGGAGTA chr2L:13084518-13084638 59 2.06e-05 CACCGATAGA AAGAGAGA CGAAGAGAGG chr3R:16899107-16899227 100 2.06e-05 TAGATAAATT AAGAGAGA CGTGATAAGA chrX:14082882-14083002 96 2.06e-05 TGTGTCGCAA Aagagaga gagagagaga chr3R:7310721-7310841 58 2.06e-05 GCGGGCAAAA Aagagaga gtgcgagcgt chr2L:13036126-13036246 51 2.06e-05 TGCGGAACGA AAGAGAGA GTCCCCTCTC chr3R:7306837-7306957 63 2.06e-05 CGAAGAGAGA AAGAGAGA GCTCTTTCAC chrX:10801228-10801348 83 2.06e-05 gacgggatag aagagaga agagccaaca chr2R:10225302-10225422 47 2.06e-05 aagagaaaga aagagaga gcggagagaT chr2L:5145260-5145380 59 2.06e-05 ACTAAATATA AAGAGAGA TTGCTTTATT chrX:12085827-12085947 90 2.06e-05 GCCAGTAAAT AAGAGAGA ACGTAACTCT chrX:20083890-20084010 47 2.06e-05 GAGCGGACCG AAGAGAGA GCGGCTCTCT chr3L:21319450-21319570 111 2.06e-05 AAAGTAACAA AAGAGAGA CA chr2L:7608186-7608306 22 2.06e-05 AGCTGGTTTT AAGAGAGA AACTTGTGGT chr3R:20484606-20484726 90 2.06e-05 AGCGGGCCGA AAGAGAGA AGAGGACTCG chr2L:790759-790879 81 2.06e-05 TGATTTATCA AAGAGAGA AAACAAGAGA chr3R:31168532-31168652 81 2.06e-05 ATACACAAAA AAGAGAGA ATTTCTTTTG chr3L:12788601-12788721 81 2.06e-05 AAATTAAATT AAGAGAGA CCCCCACGAG chr2L:3730306-3730426 52 2.06e-05 TGAAAAACGA AAGAGAGA gtggtgcggt chr3L:16935576-16935696 81 2.06e-05 TTTTGGGCAG AAGAGAGA GTCGAAGAGA chr2L:7832868-7832988 49 2.06e-05 AAAGTCCTTT AAGAGAGA CCCATGCGAA chr2L:9446784-9446904 98 2.06e-05 AGTTTCTTTT AAGAGAGA CTTGAGTTCA chr2R:19691960-19692080 68 3.70e-05 CTGGTGAAAA AAGAGAGC ATTAAAGAGA chr2L:16520555-16520675 106 3.70e-05 TGACACGCGA AAGAGAGC GCACGAA chr3R:13815155-13815275 37 3.70e-05 ATTTCCACTT AAGAGAGC ACAGAGCTTT chr3L:2322513-2322633 3 3.70e-05 TT AAGAGAGC CACTTCCGGC chr3R:31119897-31120017 46 3.70e-05 GAGAGGGCTG AAGAGAGC GAAAGAGCGG chr2L:5030644-5030764 12 3.70e-05 CTGCCAATCG AAGAGAGC TATGTCCAAT chr2R:18401886-18402006 97 3.70e-05 CTCTTAATTT AAGAGAGC TTCCCAGTTG chr2L:22145636-22145756 102 3.70e-05 TTATCATGTG AAGAGAGC GCCAATGTCA chr3R:27223167-27223287 113 3.70e-05 GATCGAGACA AAGAGAGC chr2L:4995523-4995643 53 3.70e-05 CGGAAAACAA AAGAGAGC CGTAAAGAGC chr2L:16234908-16235028 54 3.70e-05 AGCAAAGTAA AAGAGAGC GAAAAAAGAG chr3L:17238431-17238551 58 3.70e-05 AAGCTTACCG AAGAGAGC GGCACTCTCT chr3R:9979116-9979236 92 3.70e-05 TAACAGTGGC AAGAGAGC GACGTTTCAT chr3R:29215810-29215930 80 3.70e-05 AAGAGAGGGA AAGAGAGC CCAAAAGGAA chr2L:8433649-8433769 47 3.70e-05 GGGGAGAGCG AAGAGAGC GCCCCCAAAA chr3L:15494979-15495099 76 3.70e-05 AAGTGAAAAG AAGAGAGC CAAAAGAGAA chr3R:11483470-11483590 79 3.70e-05 AGAGCTGGCT AAGAGAGC GTGCTAAGAG chr3R:31499047-31499167 26 3.70e-05 CTCTTCGCAG AAGAGAGC TGGCAAAGAG chr2R:11107599-11107719 35 3.70e-05 GAAGCCGGCT AAGAGAGC GAGATACTCT chr3L:3280093-3280213 27 3.70e-05 TGGCCGTTGG AAGAGAGC CGCTTTTGGC chr3R:24485137-24485257 91 3.70e-05 GTGTGTGGCA AAGAGAGC ATCCGTCTAG chr3L:11428516-11428636 90 3.70e-05 ATTGAAAAAA AAGAGAGC AACAATTTCC chr3R:17920415-17920535 30 3.70e-05 CGTGGGCAAA AAGAGAGC GAGAGGAAGA chr3L:17211698-17211818 77 3.70e-05 CCGAAGCTCG AAGAGAGC ATTTAAGAGA chr3L:22034848-22034968 6 3.70e-05 TCGTT AAGAGAGC GGCGTTGCCC chr3R:16876790-16876910 88 3.70e-05 AAAAATGAGA AAGAGAGC CCCAAATTCT chr2L:11879077-11879197 24 3.70e-05 GAGAGTAGTA AAGAGAGC CACAATATTC chr3R:12367619-12367739 86 3.70e-05 AACGAGCATC AAGAGAGC CCACTTATTC chr3R:8523659-8523779 36 6.20e-05 ATGACCCCTC AAGAGAAA TATCTAAGAG chr3L:2107561-2107681 47 6.20e-05 AGAATTTGAG AAGAGAAA ATTTTAAGCA chr3R:12080738-12080858 56 6.20e-05 TTGAACAAGC AAGAGAAA GCGTGCTCTC chr3L:15494021-15494141 64 6.20e-05 AGAAAGTGTG AAGAGAAA GTGATAAAAA chr2R:21361997-21362117 37 6.20e-05 GCGCGCGTCG AAGAGAAA TCGCGTCGAA chr3R:30545149-30545269 35 6.20e-05 CTAATTATCG AAGAGAAA GGTGCTCTTA chr3L:4625543-4625663 82 6.20e-05 TTAAGGGAAA AAGAGAAA AGTCGGAAAG chr3R:25735687-25735807 25 6.20e-05 AAAAAAACAT AAGAGAAA CTATTGAAAC chr3R:17505942-17506062 64 6.20e-05 GGAAAATGAA AAGAGAAA AATAAAGTAA chr2R:10383606-10383726 109 6.20e-05 CACGTAagag aagagaaa agag chr3R:18481865-18481985 61 6.20e-05 CTTCGCGAGC AAGAGAAA AGCAAGAAGG chr3R:7658168-7658288 25 6.20e-05 GATCGTGTCG AAGAGAAA AGATCTCGAG chr2R:22647720-22647840 98 6.20e-05 GAGGCTAGCG AAGAGAAA TTGTAGGAAT chr2R:11930322-11930442 25 6.20e-05 TTGGAAACTT AAGAGAAA AAAGCTCGAC chr2L:18395398-18395518 10 6.20e-05 AGAAAGCCA AAGAGAAA GTGTGGATGG chr3R:13402034-13402154 111 6.20e-05 TATTTTGCAG AAGAGAAA AT chr2L:14180791-14180911 68 6.20e-05 TTGTGGCCGA AAGAGAAA GTGTTGCCGG chr2R:5990208-5990328 29 6.20e-05 ATGTGGGTCA AAGAGAAA TAAGTTGAAA chr3R:5199694-5199814 56 6.20e-05 CTTCTGGCTA AAGAGAAA TCCAGCATCA chrX:7695942-7696062 64 6.20e-05 GACAGTGTCA AAGAGAAA GGACAGCCGG chr2L:15332709-15332829 8 6.20e-05 CAAATCG AAGAGAAA ATTTCGAGAG chr2L:10208985-10209105 87 6.20e-05 AGCGAAAAAA AAGAGAAA AAGGTCTGTT chr2L:6941902-6942022 55 6.20e-05 GAGAAAGGCG AAGAGAAA GCGCGGAGCT chr3L:16452074-16452194 75 6.20e-05 CAGTTCGATA AAGAGAAA ATTATGAAGC chr3R:22124915-22125035 45 6.20e-05 AGAGCGAACG AAGAGAAA AGTAAGCCAG chr2L:21618057-21618177 102 6.20e-05 AGATACTTga aagagaaa gagaatcaca chr3L:10187014-10187134 16 6.20e-05 GTCAGTATCA AAGAGAAA TTGTATGGAA chr3L:5537563-5537683 69 6.20e-05 CAAAATCTTT AAGAGAAA AAAATTGTTG chr3L:2169085-2169205 88 6.20e-05 AAGCGAACGA AAGAGAAA AAACGCCGAT chr2R:11231924-11232044 76 6.20e-05 GCGGTGGCTT AAGAGAAA GTCATAAAGA chr3L:22788069-22788189 78 6.20e-05 aagagaagag aagagaaa agaaaaaaag chr3L:11247920-11248040 99 8.19e-05 ATTTTTGCTA AAGAGAAC TTAAGAGCGG chr2L:6742101-6742221 64 8.19e-05 GAATCGGAGA AAGAGAAC CAAGGCGAAG chr2R:7888206-7888326 38 8.19e-05 GGCCTGCCCT AAGAGAAC CGTGACGTCA chr2L:22148842-22148962 38 8.19e-05 AGCAAAAACA AAGAGAAC TTCTCTTTGT chr2L:14038913-14039033 108 8.19e-05 TTTAGGTCCG AAGAGAAC CGTGC chrX:12202898-12203018 109 8.19e-05 AAGGATAAGC AAGAGAAC GAGG chr3L:7716423-7716543 49 8.19e-05 GAGTGGCGTA AAGAGAAC GTTTAGCTAA chrX:7695742-7695862 11 8.19e-05 TGTGGACGAT AAGAGAAC ACATTTTTTT chr2R:8407898-8408018 89 8.19e-05 AACAGAAGCA AAGAGAAC ACGAGTTAAA chr3R:16933464-16933584 73 1.02e-04 AGAGCGGGCG AAGAGAGT AACTTTGTTG chr2L:2279527-2279647 76 1.02e-04 cTAATAATAA AAGAGAGT TTTCCAGCTG chr2L:20242902-20243022 64 1.02e-04 CTCACCACTA AAGAGAGT GACTAAATTT chr3R:6958574-6958694 19 1.02e-04 CTTCGGGGTC AAGAGAGT GAGATAAAGA chr3L:13934970-13935090 64 1.02e-04 CACCAGCGAA AAGAGAGT TTCGTGCTCT chr3L:5902505-5902625 81 1.02e-04 ACCTTCGTTC AAGAGAGT TTTTAAGAGT chr3L:13667879-13667999 65 1.02e-04 AAGAGCAACG AAGAGAGT TCTCTAAGAG chr2L:13113752-13113872 3 1.02e-04 CA AAGAGAGT ATCTCTGAGT chr2R:13620441-13620561 39 1.02e-04 GAAAACCCGG AAGAGAGT CGCTCCCTTA chrX:4840699-4840819 19 1.18e-04 ACAGCTGGCG AAGAGCGA GCCAAGGTCG chr2R:11756483-11756603 54 1.18e-04 GCAAACTTGA AAGAGCGA AATGTTTTCT chr2R:16335913-16336033 41 1.18e-04 TGTTTACCCA AAGAGCGA AAGAGAATTT chr3L:4062076-4062196 75 1.18e-04 TCTTAATTTA AAGAGCGA AAACATCGGA chrX:12389258-12389378 31 1.18e-04 AACAGCGGTA AAGAGCGA AGTTCAATTT chr2L:11903561-11903681 85 1.18e-04 TCCGAAGAGG AAGAGCGA GCATTTCAAG chr2L:7855309-7855429 64 1.18e-04 TGCCAGAAGA AAGAGCGA ATCGCGTATG chr2L:19917109-19917229 15 1.18e-04 GCATCAGGAA AAGAGCGA ACATAGTTTC chr2R:7545066-7545186 15 1.18e-04 CCTGTGGCCA AAGAGCGA GAGAGAGGCT chr3R:14065826-14065946 99 1.18e-04 ACTTTCATTT AAGAGCGA TTTTCTTCAA chr3R:5670170-5670290 81 1.55e-04 GAAGGCGAGG AAGAGAAT AAAACAACAC chr2L:245760-245880 31 1.55e-04 CGGCTGAAGC AAGAGAAT TAGGGTAGAG chr3R:11694794-11694914 36 1.55e-04 ACTTATGTCA AAGAGAAT TCTTAGTTAC chr3R:17366308-17366428 76 1.55e-04 TATGTCTGTG AAGAGAAT CTCGGAATCA chr2L:14300839-14300959 35 1.55e-04 ACAGCTGGCT AAGAGAAT TAAAAGGGAG chr2L:22117805-22117925 41 1.55e-04 ttgaatctcg aagagaat cttacttcct chr3L:7743117-7743237 74 1.55e-04 TTCAAAATTA AAGAGCGC ATGCGCAACG chr2R:19380372-19380492 77 1.55e-04 GACCCATTAT AAGAGAAT TTGGAAAGAG chrX:13395093-13395213 29 1.55e-04 CAATTACCTC AAGAGAAT CGTGTAAAAT chr3L:19482133-19482253 84 1.55e-04 AAGTAATGTT AAGAGAAT GTAAGAGAGG chr2L:17621335-17621455 54 1.55e-04 AGTTAAAAGA AAGAGAAT CGTGGCTAAC chr3L:22960454-22960574 33 1.55e-04 AGAGTGCACT AAGAGCGC TCAGCACTCT chr4:893640-893760 31 1.55e-04 GGAAAAATGT AAGAGAAT ATTTTTCTAT chr3R:4236535-4236655 44 1.75e-04 TTAAATCTGG AAGAGCAA CTGCCGCTGT chr2L:16231412-16231532 3 1.75e-04 TA AAGAGCAA GGATTGTCCC chr2R:8444194-8444314 75 1.75e-04 ATAAGCTAAG AAGAGCAA GCGACTTTCT chr2R:10134824-10134944 48 1.91e-04 GAGATCAGTT AAGAGCAC TTTGCGCTGC chr2R:15400914-15401034 31 1.91e-04 TTTTCTGGCC AAGAGCAC CTGCCCGCTC chr2R:17794282-17794402 112 1.91e-04 AAGCAAAGAA AAGAGCAC C chr2R:15600406-15600526 47 1.91e-04 TGGCACTCCA AAGAGCAC AGCAAAGAGG chr3R:24895010-24895130 52 1.91e-04 TTTCGGCCCA AAGAGCAC GAGAAGTATA chr3L:1275812-1275932 27 1.91e-04 AAACTCGGCC AAGAGCAC GAGGAACAAT chr3R:22124207-22124327 58 1.91e-04 AGTCGCCGGA AAGAGCAC GACGGGCGGT chrX:2324020-2324140 82 1.91e-04 CGTTGCTTTA AAGAGCAC AAGAGCACAG chr3R:29829529-29829649 9 2.07e-04 TGAATGGC AAGAGCGT CTTCGGCGCG chr3R:27075748-27075868 24 2.07e-04 CCCCGCCACT AAGAGCGT TCGCAAAGAC chr2L:16852348-16852468 83 2.07e-04 ACTGGGTGAT AAGAGCGT ACTCAAGAGA chr3R:13538854-13538974 38 2.07e-04 CGTAAGTGTT AAGAGCGT GCCAAGTTTA chr3R:19495316-19495436 63 2.26e-04 CCACTGTATT AAGAGCAT TTGCGGGTAA chr2L:6792154-6792274 9 2.26e-04 CATCGACT AAGAGCAT GAACAGGGTT chr2L:3648514-3648634 47 2.26e-04 TGTCGATCTT AAGAGCAT TTTTCTCTTA chr3R:13796759-13796879 5 2.43e-04 GCCT AAGAGAGG GCCTCTCTCT chr4:555083-555203 80 2.43e-04 AGATTTTTTT AAGAGAGG CCATATGTGG chrX:5418642-5418762 46 2.43e-04 CCCGCGAAAA AAGAGAGG ATGCGTGGTG chr2R:18405991-18406111 28 2.68e-04 GGTTAGTTTG AAAAGAGA CCCCACAGCG chr3L:3746716-3746836 112 2.88e-04 TTGGCCAAAA AAAAGAGC C chr3R:25783205-25783325 10 3.39e-04 tctGAGAGA AAAAGAAA TTCTTCTCTT chr3L:13840873-13840993 79 3.63e-04 AACGATATGG AAAAGAAC CCATGGCGAA chr2L:4441473-4441593 39 3.63e-04 CTTCGCAAAT AAAAGAAC TTTCAAAGTT chr3L:7787937-7788057 88 3.87e-04 AAGAGGAAGT AAAAGAGT GAGTGTAAAG chr2L:16234163-16234283 82 4.17e-04 AAAAGAGCTA AAGAGCGG ATAGAAAATA chr2R:8722473-8722593 60 4.70e-04 TCATTTTCAG AAGAGACA TCAAAGGTTT chr3R:13789772-13789892 17 4.70e-04 TTTTGGCCAA CAGAGAGC GAGCGAAAGA chr3R:11980347-11980467 48 6.07e-04 GATCGGCAGT CAGAGAAC TACTGCCTGC chr3L:22998329-22998449 65 6.07e-04 CCGTCGAATG CAGAGAAC GTCGGTACAC chr2R:15485183-15485303 71 6.81e-04 GCATATGTAT AAAAGCGT ACAGCTGGGT chr2L:7887447-7887567 67 6.81e-04 AAGACTGAAG AAGAGACT TGGGACAGGT chr3R:16502693-16502813 80 6.81e-04 CAGCGACGCC AAAAGCGT TGTATATGTT chrX:10333506-10333626 58 6.81e-04 AAATTGTCGG AAAAGCGT GAGAAAATTA chr3L:4073901-4074021 10 6.81e-04 AGAAGCGGA AAAAGCGT GCGCGGAGCC chr3R:13554192-13554312 81 8.19e-04 AATGCAGCCT AAAAGCAT GCCACACATA chr2R:15390252-15390372 19 8.83e-04 TTTTTAGGCA AAGAGATT GCACACTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAGARH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6474534-6474654 2.1e-05 61_[+1]_51 chr3R:19486281-19486401 2.1e-05 37_[+1]_75 chr2L:13084518-13084638 2.1e-05 58_[+1]_54 chr3R:16899107-16899227 2.1e-05 99_[+1]_13 chrX:14082882-14083002 2.1e-05 95_[+1]_17 chr3R:7310721-7310841 2.1e-05 57_[+1]_55 chr2L:13036126-13036246 2.1e-05 50_[+1]_62 chr3R:7306837-7306957 2.1e-05 62_[+1]_50 chrX:10801228-10801348 2.1e-05 82_[+1]_30 chr2R:10225302-10225422 2.1e-05 46_[+1]_66 chr2L:5145260-5145380 2.1e-05 58_[+1]_54 chrX:12085827-12085947 2.1e-05 89_[+1]_23 chrX:20083890-20084010 2.1e-05 46_[+1]_66 chr3L:21319450-21319570 2.1e-05 110_[+1]_2 chr2L:7608186-7608306 2.1e-05 21_[+1]_91 chr3R:20484606-20484726 2.1e-05 89_[+1]_23 chr2L:790759-790879 2.1e-05 80_[+1]_32 chr3R:31168532-31168652 2.1e-05 80_[+1]_32 chr3L:12788601-12788721 2.1e-05 80_[+1]_32 chr2L:3730306-3730426 2.1e-05 51_[+1]_61 chr3L:16935576-16935696 2.1e-05 80_[+1]_32 chr2L:7832868-7832988 2.1e-05 48_[+1]_64 chr2L:9446784-9446904 2.1e-05 97_[+1]_15 chr2R:19691960-19692080 3.7e-05 67_[+1]_45 chr2L:16520555-16520675 3.7e-05 105_[+1]_7 chr3R:13815155-13815275 3.7e-05 36_[+1]_76 chr3L:2322513-2322633 3.7e-05 2_[+1]_110 chr3R:31119897-31120017 3.7e-05 45_[+1]_67 chr2L:5030644-5030764 3.7e-05 11_[+1]_101 chr2R:18401886-18402006 3.7e-05 96_[+1]_16 chr2L:22145636-22145756 3.7e-05 101_[+1]_11 chr3R:27223167-27223287 3.7e-05 112_[+1] chr2L:4995523-4995643 3.7e-05 52_[+1]_60 chr2L:16234908-16235028 3.7e-05 53_[+1]_59 chr3L:17238431-17238551 3.7e-05 57_[+1]_55 chr3R:9979116-9979236 3.7e-05 91_[+1]_21 chr3R:29215810-29215930 3.7e-05 79_[+1]_33 chr2L:8433649-8433769 3.7e-05 46_[+1]_66 chr3L:15494979-15495099 3.7e-05 75_[+1]_37 chr3R:11483470-11483590 3.7e-05 78_[+1]_34 chr3R:31499047-31499167 3.7e-05 25_[+1]_87 chr2R:11107599-11107719 3.7e-05 34_[+1]_78 chr3L:3280093-3280213 3.7e-05 26_[+1]_86 chr3R:24485137-24485257 3.7e-05 90_[+1]_22 chr3L:11428516-11428636 3.7e-05 89_[+1]_23 chr3R:17920415-17920535 3.7e-05 29_[+1]_83 chr3L:17211698-17211818 3.7e-05 76_[+1]_36 chr3L:22034848-22034968 3.7e-05 5_[+1]_107 chr3R:16876790-16876910 3.7e-05 87_[+1]_25 chr2L:11879077-11879197 3.7e-05 23_[+1]_89 chr3R:12367619-12367739 3.7e-05 85_[+1]_27 chr3R:8523659-8523779 6.2e-05 35_[+1]_77 chr3L:2107561-2107681 6.2e-05 46_[+1]_66 chr3R:12080738-12080858 6.2e-05 55_[+1]_57 chr3L:15494021-15494141 6.2e-05 63_[+1]_49 chr2R:21361997-21362117 6.2e-05 36_[+1]_76 chr3R:30545149-30545269 6.2e-05 34_[+1]_78 chr3L:4625543-4625663 6.2e-05 81_[+1]_31 chr3R:25735687-25735807 6.2e-05 24_[+1]_88 chr3R:17505942-17506062 6.2e-05 63_[+1]_49 chr2R:10383606-10383726 6.2e-05 108_[+1]_4 chr3R:18481865-18481985 6.2e-05 60_[+1]_52 chr3R:7658168-7658288 6.2e-05 24_[+1]_88 chr2R:22647720-22647840 6.2e-05 97_[+1]_15 chr2R:11930322-11930442 6.2e-05 24_[+1]_88 chr2L:18395398-18395518 6.2e-05 9_[+1]_103 chr3R:13402034-13402154 6.2e-05 110_[+1]_2 chr2L:14180791-14180911 6.2e-05 67_[+1]_45 chr2R:5990208-5990328 6.2e-05 28_[+1]_84 chr3R:5199694-5199814 6.2e-05 55_[+1]_57 chrX:7695942-7696062 6.2e-05 63_[+1]_49 chr2L:15332709-15332829 6.2e-05 7_[+1]_105 chr2L:10208985-10209105 6.2e-05 86_[+1]_26 chr2L:6941902-6942022 6.2e-05 54_[+1]_58 chr3L:16452074-16452194 6.2e-05 74_[+1]_38 chr3R:22124915-22125035 6.2e-05 44_[+1]_68 chr2L:21618057-21618177 6.2e-05 101_[+1]_11 chr3L:10187014-10187134 6.2e-05 15_[+1]_97 chr3L:5537563-5537683 6.2e-05 68_[+1]_44 chr3L:2169085-2169205 6.2e-05 87_[+1]_25 chr2R:11231924-11232044 6.2e-05 75_[+1]_37 chr3L:22788069-22788189 6.2e-05 77_[+1]_35 chr3L:11247920-11248040 8.2e-05 98_[+1]_14 chr2L:6742101-6742221 8.2e-05 63_[+1]_49 chr2R:7888206-7888326 8.2e-05 37_[+1]_75 chr2L:22148842-22148962 8.2e-05 37_[+1]_75 chr2L:14038913-14039033 8.2e-05 107_[+1]_5 chrX:12202898-12203018 8.2e-05 108_[+1]_4 chr3L:7716423-7716543 8.2e-05 48_[+1]_64 chrX:7695742-7695862 8.2e-05 10_[+1]_102 chr2R:8407898-8408018 8.2e-05 88_[+1]_24 chr3R:16933464-16933584 0.0001 72_[+1]_40 chr2L:2279527-2279647 0.0001 75_[+1]_37 chr2L:20242902-20243022 0.0001 63_[+1]_49 chr3R:6958574-6958694 0.0001 18_[+1]_94 chr3L:13934970-13935090 0.0001 63_[+1]_49 chr3L:5902505-5902625 0.0001 80_[+1]_32 chr3L:13667879-13667999 0.0001 64_[+1]_48 chr2L:13113752-13113872 0.0001 2_[+1]_110 chr2R:13620441-13620561 0.0001 38_[+1]_74 chrX:4840699-4840819 0.00012 18_[+1]_94 chr2R:11756483-11756603 0.00012 53_[+1]_59 chr2R:16335913-16336033 0.00012 40_[+1]_72 chr3L:4062076-4062196 0.00012 74_[+1]_38 chrX:12389258-12389378 0.00012 30_[+1]_82 chr2L:11903561-11903681 0.00012 84_[+1]_28 chr2L:7855309-7855429 0.00012 63_[+1]_49 chr2L:19917109-19917229 0.00012 14_[+1]_98 chr2R:7545066-7545186 0.00012 14_[+1]_98 chr3R:14065826-14065946 0.00012 98_[+1]_14 chr3R:5670170-5670290 0.00016 80_[+1]_32 chr2L:245760-245880 0.00016 30_[+1]_82 chr3R:11694794-11694914 0.00016 35_[+1]_77 chr3R:17366308-17366428 0.00016 75_[+1]_37 chr2L:14300839-14300959 0.00016 34_[+1]_78 chr2L:22117805-22117925 0.00016 40_[+1]_72 chr3L:7743117-7743237 0.00016 73_[+1]_39 chr2R:19380372-19380492 0.00016 76_[+1]_36 chrX:13395093-13395213 0.00016 28_[+1]_84 chr3L:19482133-19482253 0.00016 83_[+1]_29 chr2L:17621335-17621455 0.00016 53_[+1]_59 chr3L:22960454-22960574 0.00016 32_[+1]_80 chr4:893640-893760 0.00016 30_[+1]_82 chr3R:4236535-4236655 0.00018 43_[+1]_69 chr2L:16231412-16231532 0.00018 2_[+1]_110 chr2R:8444194-8444314 0.00018 74_[+1]_38 chr2R:10134824-10134944 0.00019 47_[+1]_65 chr2R:15400914-15401034 0.00019 30_[+1]_82 chr2R:17794282-17794402 0.00019 111_[+1]_1 chr2R:15600406-15600526 0.00019 46_[+1]_66 chr3R:24895010-24895130 0.00019 51_[+1]_61 chr3L:1275812-1275932 0.00019 26_[+1]_86 chr3R:22124207-22124327 0.00019 57_[+1]_55 chrX:2324020-2324140 0.00019 81_[+1]_31 chr3R:29829529-29829649 0.00021 8_[+1]_104 chr3R:27075748-27075868 0.00021 23_[+1]_89 chr2L:16852348-16852468 0.00021 82_[+1]_30 chr3R:13538854-13538974 0.00021 37_[+1]_75 chr3R:19495316-19495436 0.00023 62_[+1]_50 chr2L:6792154-6792274 0.00023 8_[+1]_104 chr2L:3648514-3648634 0.00023 46_[+1]_66 chr3R:13796759-13796879 0.00024 4_[+1]_108 chr4:555083-555203 0.00024 79_[+1]_33 chrX:5418642-5418762 0.00024 45_[+1]_67 chr2R:18405991-18406111 0.00027 27_[+1]_85 chr3L:3746716-3746836 0.00029 111_[+1]_1 chr3R:25783205-25783325 0.00034 9_[+1]_103 chr3L:13840873-13840993 0.00036 78_[+1]_34 chr2L:4441473-4441593 0.00036 38_[+1]_74 chr3L:7787937-7788057 0.00039 87_[+1]_25 chr2L:16234163-16234283 0.00042 81_[+1]_31 chr2R:8722473-8722593 0.00047 59_[+1]_53 chr3R:13789772-13789892 0.00047 16_[+1]_96 chr3R:11980347-11980467 0.00061 47_[+1]_65 chr3L:22998329-22998449 0.00061 64_[+1]_48 chr2R:15485183-15485303 0.00068 70_[+1]_42 chr2L:7887447-7887567 0.00068 66_[+1]_46 chr3R:16502693-16502813 0.00068 79_[+1]_33 chrX:10333506-10333626 0.00068 57_[+1]_55 chr3L:4073901-4074021 0.00068 9_[+1]_103 chr3R:13554192-13554312 0.00082 80_[+1]_32 chr2R:15390252-15390372 0.00088 18_[+1]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAGARH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGAGARH width=8 seqs=162 chr3R:6474534-6474654 ( 62) AAGAGAGA 1 chr3R:19486281-19486401 ( 38) AAGAGAGA 1 chr2L:13084518-13084638 ( 59) AAGAGAGA 1 chr3R:16899107-16899227 ( 100) AAGAGAGA 1 chrX:14082882-14083002 ( 96) AAGAGAGA 1 chr3R:7310721-7310841 ( 58) AAGAGAGA 1 chr2L:13036126-13036246 ( 51) AAGAGAGA 1 chr3R:7306837-7306957 ( 63) AAGAGAGA 1 chrX:10801228-10801348 ( 83) AAGAGAGA 1 chr2R:10225302-10225422 ( 47) AAGAGAGA 1 chr2L:5145260-5145380 ( 59) AAGAGAGA 1 chrX:12085827-12085947 ( 90) AAGAGAGA 1 chrX:20083890-20084010 ( 47) AAGAGAGA 1 chr3L:21319450-21319570 ( 111) AAGAGAGA 1 chr2L:7608186-7608306 ( 22) AAGAGAGA 1 chr3R:20484606-20484726 ( 90) AAGAGAGA 1 chr2L:790759-790879 ( 81) AAGAGAGA 1 chr3R:31168532-31168652 ( 81) AAGAGAGA 1 chr3L:12788601-12788721 ( 81) AAGAGAGA 1 chr2L:3730306-3730426 ( 52) AAGAGAGA 1 chr3L:16935576-16935696 ( 81) AAGAGAGA 1 chr2L:7832868-7832988 ( 49) AAGAGAGA 1 chr2L:9446784-9446904 ( 98) AAGAGAGA 1 chr2R:19691960-19692080 ( 68) AAGAGAGC 1 chr2L:16520555-16520675 ( 106) AAGAGAGC 1 chr3R:13815155-13815275 ( 37) AAGAGAGC 1 chr3L:2322513-2322633 ( 3) AAGAGAGC 1 chr3R:31119897-31120017 ( 46) AAGAGAGC 1 chr2L:5030644-5030764 ( 12) AAGAGAGC 1 chr2R:18401886-18402006 ( 97) AAGAGAGC 1 chr2L:22145636-22145756 ( 102) AAGAGAGC 1 chr3R:27223167-27223287 ( 113) AAGAGAGC 1 chr2L:4995523-4995643 ( 53) AAGAGAGC 1 chr2L:16234908-16235028 ( 54) AAGAGAGC 1 chr3L:17238431-17238551 ( 58) AAGAGAGC 1 chr3R:9979116-9979236 ( 92) AAGAGAGC 1 chr3R:29215810-29215930 ( 80) AAGAGAGC 1 chr2L:8433649-8433769 ( 47) AAGAGAGC 1 chr3L:15494979-15495099 ( 76) AAGAGAGC 1 chr3R:11483470-11483590 ( 79) AAGAGAGC 1 chr3R:31499047-31499167 ( 26) AAGAGAGC 1 chr2R:11107599-11107719 ( 35) AAGAGAGC 1 chr3L:3280093-3280213 ( 27) AAGAGAGC 1 chr3R:24485137-24485257 ( 91) AAGAGAGC 1 chr3L:11428516-11428636 ( 90) AAGAGAGC 1 chr3R:17920415-17920535 ( 30) AAGAGAGC 1 chr3L:17211698-17211818 ( 77) AAGAGAGC 1 chr3L:22034848-22034968 ( 6) AAGAGAGC 1 chr3R:16876790-16876910 ( 88) AAGAGAGC 1 chr2L:11879077-11879197 ( 24) AAGAGAGC 1 chr3R:12367619-12367739 ( 86) AAGAGAGC 1 chr3R:8523659-8523779 ( 36) AAGAGAAA 1 chr3L:2107561-2107681 ( 47) AAGAGAAA 1 chr3R:12080738-12080858 ( 56) AAGAGAAA 1 chr3L:15494021-15494141 ( 64) AAGAGAAA 1 chr2R:21361997-21362117 ( 37) AAGAGAAA 1 chr3R:30545149-30545269 ( 35) AAGAGAAA 1 chr3L:4625543-4625663 ( 82) AAGAGAAA 1 chr3R:25735687-25735807 ( 25) AAGAGAAA 1 chr3R:17505942-17506062 ( 64) AAGAGAAA 1 chr2R:10383606-10383726 ( 109) AAGAGAAA 1 chr3R:18481865-18481985 ( 61) AAGAGAAA 1 chr3R:7658168-7658288 ( 25) AAGAGAAA 1 chr2R:22647720-22647840 ( 98) AAGAGAAA 1 chr2R:11930322-11930442 ( 25) AAGAGAAA 1 chr2L:18395398-18395518 ( 10) AAGAGAAA 1 chr3R:13402034-13402154 ( 111) AAGAGAAA 1 chr2L:14180791-14180911 ( 68) AAGAGAAA 1 chr2R:5990208-5990328 ( 29) AAGAGAAA 1 chr3R:5199694-5199814 ( 56) AAGAGAAA 1 chrX:7695942-7696062 ( 64) AAGAGAAA 1 chr2L:15332709-15332829 ( 8) AAGAGAAA 1 chr2L:10208985-10209105 ( 87) AAGAGAAA 1 chr2L:6941902-6942022 ( 55) AAGAGAAA 1 chr3L:16452074-16452194 ( 75) AAGAGAAA 1 chr3R:22124915-22125035 ( 45) AAGAGAAA 1 chr2L:21618057-21618177 ( 102) AAGAGAAA 1 chr3L:10187014-10187134 ( 16) AAGAGAAA 1 chr3L:5537563-5537683 ( 69) AAGAGAAA 1 chr3L:2169085-2169205 ( 88) AAGAGAAA 1 chr2R:11231924-11232044 ( 76) AAGAGAAA 1 chr3L:22788069-22788189 ( 78) AAGAGAAA 1 chr3L:11247920-11248040 ( 99) AAGAGAAC 1 chr2L:6742101-6742221 ( 64) AAGAGAAC 1 chr2R:7888206-7888326 ( 38) AAGAGAAC 1 chr2L:22148842-22148962 ( 38) AAGAGAAC 1 chr2L:14038913-14039033 ( 108) AAGAGAAC 1 chrX:12202898-12203018 ( 109) AAGAGAAC 1 chr3L:7716423-7716543 ( 49) AAGAGAAC 1 chrX:7695742-7695862 ( 11) AAGAGAAC 1 chr2R:8407898-8408018 ( 89) AAGAGAAC 1 chr3R:16933464-16933584 ( 73) AAGAGAGT 1 chr2L:2279527-2279647 ( 76) AAGAGAGT 1 chr2L:20242902-20243022 ( 64) AAGAGAGT 1 chr3R:6958574-6958694 ( 19) AAGAGAGT 1 chr3L:13934970-13935090 ( 64) AAGAGAGT 1 chr3L:5902505-5902625 ( 81) AAGAGAGT 1 chr3L:13667879-13667999 ( 65) AAGAGAGT 1 chr2L:13113752-13113872 ( 3) AAGAGAGT 1 chr2R:13620441-13620561 ( 39) AAGAGAGT 1 chrX:4840699-4840819 ( 19) AAGAGCGA 1 chr2R:11756483-11756603 ( 54) AAGAGCGA 1 chr2R:16335913-16336033 ( 41) AAGAGCGA 1 chr3L:4062076-4062196 ( 75) AAGAGCGA 1 chrX:12389258-12389378 ( 31) AAGAGCGA 1 chr2L:11903561-11903681 ( 85) AAGAGCGA 1 chr2L:7855309-7855429 ( 64) AAGAGCGA 1 chr2L:19917109-19917229 ( 15) AAGAGCGA 1 chr2R:7545066-7545186 ( 15) AAGAGCGA 1 chr3R:14065826-14065946 ( 99) AAGAGCGA 1 chr3R:5670170-5670290 ( 81) AAGAGAAT 1 chr2L:245760-245880 ( 31) AAGAGAAT 1 chr3R:11694794-11694914 ( 36) AAGAGAAT 1 chr3R:17366308-17366428 ( 76) AAGAGAAT 1 chr2L:14300839-14300959 ( 35) AAGAGAAT 1 chr2L:22117805-22117925 ( 41) AAGAGAAT 1 chr3L:7743117-7743237 ( 74) AAGAGCGC 1 chr2R:19380372-19380492 ( 77) AAGAGAAT 1 chrX:13395093-13395213 ( 29) AAGAGAAT 1 chr3L:19482133-19482253 ( 84) AAGAGAAT 1 chr2L:17621335-17621455 ( 54) AAGAGAAT 1 chr3L:22960454-22960574 ( 33) AAGAGCGC 1 chr4:893640-893760 ( 31) AAGAGAAT 1 chr3R:4236535-4236655 ( 44) AAGAGCAA 1 chr2L:16231412-16231532 ( 3) AAGAGCAA 1 chr2R:8444194-8444314 ( 75) AAGAGCAA 1 chr2R:10134824-10134944 ( 48) AAGAGCAC 1 chr2R:15400914-15401034 ( 31) AAGAGCAC 1 chr2R:17794282-17794402 ( 112) AAGAGCAC 1 chr2R:15600406-15600526 ( 47) AAGAGCAC 1 chr3R:24895010-24895130 ( 52) AAGAGCAC 1 chr3L:1275812-1275932 ( 27) AAGAGCAC 1 chr3R:22124207-22124327 ( 58) AAGAGCAC 1 chrX:2324020-2324140 ( 82) AAGAGCAC 1 chr3R:29829529-29829649 ( 9) AAGAGCGT 1 chr3R:27075748-27075868 ( 24) AAGAGCGT 1 chr2L:16852348-16852468 ( 83) AAGAGCGT 1 chr3R:13538854-13538974 ( 38) AAGAGCGT 1 chr3R:19495316-19495436 ( 63) AAGAGCAT 1 chr2L:6792154-6792274 ( 9) AAGAGCAT 1 chr2L:3648514-3648634 ( 47) AAGAGCAT 1 chr3R:13796759-13796879 ( 5) AAGAGAGG 1 chr4:555083-555203 ( 80) AAGAGAGG 1 chrX:5418642-5418762 ( 46) AAGAGAGG 1 chr2R:18405991-18406111 ( 28) AAAAGAGA 1 chr3L:3746716-3746836 ( 112) AAAAGAGC 1 chr3R:25783205-25783325 ( 10) AAAAGAAA 1 chr3L:13840873-13840993 ( 79) AAAAGAAC 1 chr2L:4441473-4441593 ( 39) AAAAGAAC 1 chr3L:7787937-7788057 ( 88) AAAAGAGT 1 chr2L:16234163-16234283 ( 82) AAGAGCGG 1 chr2R:8722473-8722593 ( 60) AAGAGACA 1 chr3R:13789772-13789892 ( 17) CAGAGAGC 1 chr3R:11980347-11980467 ( 48) CAGAGAAC 1 chr3L:22998329-22998449 ( 65) CAGAGAAC 1 chr2R:15485183-15485303 ( 71) AAAAGCGT 1 chr2L:7887447-7887567 ( 67) AAGAGACT 1 chr3R:16502693-16502813 ( 80) AAAAGCGT 1 chrX:10333506-10333626 ( 58) AAAAGCGT 1 chr3L:4073901-4074021 ( 10) AAAAGCGT 1 chr3R:13554192-13554312 ( 81) AAAAGCAT 1 chr2R:15390252-15390372 ( 19) AAGAGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAGARH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.70439 E= 2.4e-140 181 -359 -1398 -1398 184 -1398 -1398 -1398 -204 -1398 202 -1398 184 -1398 -1398 -1398 -1398 -1398 212 -1398 148 0 -1398 -1398 65 -417 124 -544 63 56 -322 -31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAGARH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 162 E= 2.4e-140 0.981481 0.018519 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.067901 0.000000 0.932099 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.438272 0.012346 0.543210 0.006173 0.432099 0.327160 0.024691 0.216049 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGAGARH MEME-1 regular expression -------------------------------------------------------------------------------- AAGAG[AC][GA][ACT] -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCTCTTW MEME-2 width = 8 sites = 126 llr = 1086 E-value = 1.1e-118 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCTCTTW MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::5 pos.-specific C 6:a:a::1 probability G :2:::::1 matrix T 47:a:aa4 bits 2.2 * * 2.0 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ******* (12.4 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTCTCTTA consensus TG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTTW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8272838-8272958 57 1.60e-05 GAGCGCATCG CTCTCTTA GGCGCCGGGC chr3R:6474534-6474654 106 1.60e-05 AGCGCTCTCA CTCTCTTA CTTTCTC chr2L:19809790-19809910 11 1.60e-05 ATTTGCTGTG CTCTCTTA TGGGCCAAGT chr3R:12080738-12080858 71 1.60e-05 AAAGCGTGCT CTCTCTTA CTCTCTTTTC chr2R:18404476-18404596 69 1.60e-05 CTTAGCCATG CTCTCTTA ACCTTTCCAT chr3R:5716808-5716928 105 1.60e-05 GCCGCTCTCG CTCTCTTA AAAAACGA chrX:7092016-7092136 43 1.60e-05 CTGTGCTTTC CTCTCTTA AGTCCTATGG chr3L:13840873-13840993 98 1.60e-05 CATGGCGAAA CTCTCTTA AATCCACTCT chr2L:3757116-3757236 67 1.60e-05 TCCAGCGTGA CTCTCTTA AAATTCCTGC chr2L:5145260-5145380 36 1.60e-05 GGAAAGCCTC CTCTCTTA TTCACACTAA chr2R:18401886-18402006 85 1.60e-05 CACAGCGAAA CTCTCTTA ATTTAAGAGA chrX:12085827-12085947 104 1.60e-05 GAGAACGTAA CTCTCTTA GCGAAACTC chr2R:8722473-8722593 24 1.60e-05 CAGATTCGCG CTCTCTTA AGGGCAGAGC chrX:278068-278188 9 1.60e-05 CTCTCTCC CTCTCTTA ATTTCCCACC chr2L:13878099-13878219 113 1.60e-05 TTTTTTCACT CTCTCTTA chr3L:4062076-4062196 62 1.60e-05 CCCATTTTGG CTCTCTTA ATTTAAAGAG chr3L:17238431-17238551 70 1.60e-05 GAGAGCGGCA CTCTCTTA AACCGCGTGC chr2R:10918379-10918499 7 1.60e-05 GGGGGA CTCTCTTA GCTTTTCGCT chr3L:3746716-3746836 93 1.60e-05 TCATCCGGAG CTCTCTTA GTTGGCCAAA chr2R:11107599-11107719 49 1.60e-05 GAGCGAGATA CTCTCTTA ATCTGGAAAC chr3L:3280093-3280213 100 1.60e-05 CACATCGCAA CTCTCTTA AGTCGCGGTT chr2L:8346424-8346544 105 1.60e-05 CTGGCAGTCA CTCTCTTA CGCATCGA chr2R:15390252-15390372 50 1.60e-05 TTGACGCGGA CTCTCTTA AGTTGGGAAA chr3R:15077362-15077482 58 1.60e-05 TGATATCCGG CTCTCTTA AGGCAAGCAT chr3L:3749618-3749738 80 1.60e-05 TTTTCCCGGA CTCTCTTA CGACAATGAA chr2L:11879077-11879197 68 1.60e-05 TAAATGCAAA CTCTCTTA GTTATCCAAA chr2L:19918006-19918126 63 1.60e-05 CTCTTTGGGT CTCTCTTA AATGGATTTT chr2L:5659268-5659388 44 1.60e-05 GCGCTTCGGT CTCTCTTA CCCAAGGCTT chrX:13395093-13395213 72 1.60e-05 GAGATCGCAG CTCTCTTA AGCGCCAGGC chr3R:4077787-4077907 28 1.60e-05 AACTTTTCTG CTCTCTTA AAAGCTCCGT chr3R:14580219-14580339 62 1.60e-05 tatttcatga ctctctta ACGCGCTCTT chr3L:4073901-4074021 108 1.60e-05 GATCTTTCGG CTCTCTTA GCAAA chr3R:14065826-14065946 82 1.60e-05 GCTGATAACG CTCTCTTA CTTTCATTTA chr3L:882967-883087 23 3.13e-05 CTCTTTGGCT CTCTCTTT CCTTCGGGGG chr2R:11662803-11662923 52 3.13e-05 TAGGTTGGTG CTCTCTTT TCGGGCTTCT chrX:3684921-3685041 41 3.13e-05 ACAGCTTGCT CTCTCTTT CTTGTTCTCT chr2R:11756483-11756603 31 3.13e-05 CCGTTAGCTA CTCTCTTT CTTTTGCAAA chrX:17871162-17871282 40 3.13e-05 CTCTTTCGTA CTCTCTTT TTCCCCACCA chr2L:13036126-13036246 64 3.13e-05 AGAGAGTCCC CTCTCTTT GTGAATGTAA chrX:5744477-5744597 56 3.13e-05 TTGTTAGCAG CTCTCTTT ATCTGCTTGT chr2R:11757733-11757853 37 3.13e-05 CTCTTATTTG CTCTCTTT GCGCAGCGGC chr2L:21141872-21141992 65 3.13e-05 CTTTTCGCCG CTCTCTTT ACTACGTCTA chr2L:13035922-13036042 12 3.13e-05 ctttctctct ctctcttt cCCAATGTCT chr3R:19503399-19503519 45 3.13e-05 ATTTTTCGTA CTCTCTTT TGTTTATTTT chr2R:14449082-14449202 10 3.13e-05 GAGAGAAAA CTCTCTTT TGGCAGCTCT chr2L:7855309-7855429 36 3.13e-05 AGTTTTCCGC CTCTCTTT GGCGCAGGCG chr3L:16452074-16452194 94 3.13e-05 TTATGAAGCA CTCTCTTT GTGAAAAAAT chr2R:18406874-18406994 1 3.13e-05 . CTCTCTTT CGAAATTCTA chr3R:13554192-13554312 60 3.13e-05 CCACTTCGCT CTCTCTTT GGCAATGCAG chr3R:16876790-16876910 104 3.13e-05 GCCCCAAATT CTCTCTTT CGTCTTGTT chr3R:18931876-18931996 105 3.13e-05 ttagcgctct ctctcttt ctctctct chr2L:3426026-3426146 26 3.13e-05 TGGGGGTGCA CTCTCTTT CTCTTTCTCT chr3R:4236535-4236655 3 5.05e-05 GA TTCTCTTA CTTGCAGTTT chr3R:29829529-29829649 88 5.05e-05 GATTGAAACG TTCTCTTA AAACGTCTTA chr3L:9501461-9501581 86 5.05e-05 TATTCTGCGT TTCTCTTA AACTCTCAAT chr2L:3648514-3648634 57 5.05e-05 AAGAGCATTT TTCTCTTA AGGTCTCCGT chr3R:11172972-11173092 39 5.05e-05 TTCAATCTGG TTCTCTTA AGTTCTCTTA chr2L:22148842-22148962 103 5.05e-05 AGCACTAGCT TTCTCTTA GCTCATCAAT chr3R:18481865-18481985 80 5.05e-05 GCAAGAAGGT TTCTCTTA CTCGACGTTC chr2L:18395398-18395518 46 5.05e-05 GAGTGATGGT TTCTCTTA CCTTACAAGC chr3L:2400392-2400512 17 5.05e-05 CATTGGCAGG TTCTCTTA AATTCTTTAG chr2L:22117805-22117925 85 5.05e-05 caaaacagat ttctctta cttaagctca chr2L:19917109-19917229 44 5.05e-05 AACTCGGCTT TTCTCTTA ACTTTGCGCC chr3L:21994122-21994242 80 5.05e-05 CCGGCTCTAT TTCTCTTA CTTGGTTCTC chr2L:13113752-13113872 62 5.05e-05 CATCCTCAAC TTCTCTTA GTTTTTTTTA chr2R:14814364-14814484 76 5.05e-05 CAATTCAGTC TTCTCTTA GCAGCATCGA chr3R:25759503-25759623 3 6.89e-05 AA TTCTCTTT TACTTTCGTC chr3R:25783205-25783325 21 6.89e-05 AAAGAAATTC TTCTCTTT GAAGGAATTT chr2R:16335913-16336033 63 6.89e-05 GAATTTTGTG TTCTCTTT CAATTTTCAA chr3L:3747423-3747543 53 6.89e-05 AGGCTGCAAT TTCTCTTT CCCGCTCTCA chr3R:17505942-17506062 21 6.89e-05 AGGACCTTCA TTCTCTTT GCTATCTGTC chr3R:9979116-9979236 26 6.89e-05 GCTCTATACA TTCTCTTT TGCTGTTACT chr2L:20242902-20243022 97 6.89e-05 ACTCTTTTGA TTCTCTTT AAAGCTCATT chrX:10333506-10333626 33 6.89e-05 GTTGGCCATT TTCTCTTT TTTTGGGAAA chr2R:15610013-15610133 83 6.89e-05 TCTTTGGCTC TTCTCTTT TGCCTTCTTC chr3R:18621332-18621452 85 6.89e-05 TTCGACTGGT TTCTCTTT TTGCCAAGTC chrX:18665865-18665985 81 6.89e-05 GGCGCCAGAT TTCTCTTT CGGGCCGCGG chr3R:7753695-7753815 3 6.89e-05 CG TTCTCTTT CACATTTCCC chr2L:7243763-7243883 82 6.89e-05 CTTTCTCCGC TTCTCTTT GTTGTTTGTT chr2L:16852348-16852468 38 6.89e-05 CCGAAAAGAG TTCTCTTT ATATAGGAAC chr2L:16794125-16794245 54 6.89e-05 GCTTGCCCAT TTCTCTTT AGTTTCTATT chr3L:19482133-19482253 42 6.89e-05 CATTCAGCGC TTCTCTTT GGCGAGAGCT chr3R:30552812-30552932 77 6.89e-05 CAATGAAGAC TTCTCTTT TGTTTGGTGG chr2R:8131808-8131928 55 8.26e-05 TCTTCATTCG CGCTCTTA ATGTTTTACG chr3R:7310721-7310841 18 8.26e-05 AGCGGCGATG CGCTCTTA AAACAAAAAA chr2R:15600406-15600526 94 8.26e-05 ATTGGAAAAG CGCTCTTA ACTACGATCT chr4:893640-893760 82 8.26e-05 CTCTGTCAAA CGCTCTTA AAGTTTTTGT chr3R:17506930-17507050 109 1.09e-04 TGCGCATGCG CGCTCTTT CGAC chrX:19788218-19788338 36 1.09e-04 tttcacagcg ctctcttc atcgtgctct chrX:4840699-4840819 50 1.09e-04 GCCCGGCGGT CGCTCTTT AGTGCGGGGA chr3R:13796759-13796879 17 1.09e-04 GAGAGGGCCT CTCTCTTC TGGCCATCTC chr2R:15400914-15401034 44 1.09e-04 AGCACCTGCC CGCTCTTT GGAATTCCCA chrX:20083890-20084010 59 1.09e-04 GAGAGAGCGG CTCTCTTC AGGAGTCCTT chr3R:16128634-16128754 9 1.09e-04 GTCTTCGG CTCTCTTC TTTCCATCAC chr2R:8444194-8444314 93 1.09e-04 GCGACTTTCT CTCTCTTC TCTTCAATTT chr3L:7189787-7189907 10 1.09e-04 acTCCGCGG CTCTCTTC CACGCTCTCT chrX:5282169-5282289 35 1.25e-04 TTCCCTTAAA TGCTCTTA GATGAAAAGC chr3R:30545149-30545269 45 1.25e-04 AAGAGAAAGG TGCTCTTA GCACACCTGC chr3R:13789772-13789892 44 1.25e-04 AAGAAGAACG TGCTCTTA AGGCCCACAA chr3R:20564081-20564201 62 1.25e-04 TCTTTTTAGT TGCTCTTA ACATTCGCCT chr3L:13934970-13935090 76 1.25e-04 GAGAGTTTCG TGCTCTTA ACATTTAATT chr3L:10187014-10187134 72 1.25e-04 AATTCTTTGG TGCTCTTA GACTAGCTCT chr3R:25331155-25331275 91 1.69e-04 ATATATTGTG TTCTCTTC AATTCCGTGA chr2L:7887447-7887567 85 1.69e-04 TGGGACAGGT TGCTCTTT TGGATCTTTC chr3R:23605623-23605743 37 1.69e-04 CCGAACGCCA TGCTCTTT AAGCCCTGCC chr3R:4083775-4083895 69 1.69e-04 AAAGGAGCAG CTCTCTTG CGGGAGTCAT chr3R:31168532-31168652 108 1.69e-04 GCGGGGGTGA CTCTCTTG CGCTA chr2L:15332709-15332829 96 1.69e-04 AGAATGCTTA TGCTCTTT TTCGTACTGA chr2R:11116554-11116674 98 1.69e-04 CATCAGCATT TTCTCTTC GGCCATATAA chrX:2324020-2324140 63 1.69e-04 GAGCCCTTGC TGCTCTTT CCGTTGCTTT chr2L:17621335-17621455 78 1.69e-04 TAACAGAGCA TGCTCTTT GGGAATTTTA chr3L:22960454-22960574 50 1.69e-04 CTCAGCACTC TGCTCTTT GTTTAGAGTG chr3L:16073253-16073373 49 1.69e-04 ACTCTTTCGC TGCTCTTT CGTGTTTATT chr3R:6460765-6460885 104 1.96e-04 GCACAGCCGA CGCTCTTC CGAATCTCT chr3R:7306837-7306957 84 1.96e-04 CTTTCACTGA CGCTCTTC GAGTTGGGGG chrX:5418642-5418762 6 1.96e-04 CCATC CGCTCTTC CGCATCGGCA chr3R:31499047-31499167 14 1.96e-04 CAGTAAAGAG CGCTCTTC GCAGAAGAGA chr3L:11428516-11428636 40 1.96e-04 GAGATCAGCT TTCTCTTG AGTGATCGCG chr2L:6792154-6792274 86 2.20e-04 gtTAAGAGAT CGCTCTTG ATCTCAGATA chr2L:22145636-22145756 57 2.20e-04 CATACCAATG CGCTCTTG TCCGCCTCCA chr3L:22998329-22998449 83 2.20e-04 GTCGGTACAC CGCTCTTG CTATTGCTAT chr3L:180145-180265 69 2.51e-04 CTGTTTTCGT TGCTCTTG CCTTGTTTCA chr3L:15494021-15494141 95 2.51e-04 CGGAGAGACA TGCTCTTG ACTTGCGACA chr3R:27075748-27075868 5 2.51e-04 GCAA CACTCTTA ACCCCGCCAC chrX:7695742-7695862 52 2.67e-04 GTCTGCACTG CACTCTTT ACAAAATATC chr3L:17549332-17549452 30 2.87e-04 AAGAGGTTCT TACTCTTA ACTTGAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTTW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8272838-8272958 1.6e-05 56_[+2]_56 chr3R:6474534-6474654 1.6e-05 105_[+2]_7 chr2L:19809790-19809910 1.6e-05 10_[+2]_102 chr3R:12080738-12080858 1.6e-05 70_[+2]_42 chr2R:18404476-18404596 1.6e-05 68_[+2]_44 chr3R:5716808-5716928 1.6e-05 104_[+2]_8 chrX:7092016-7092136 1.6e-05 42_[+2]_70 chr3L:13840873-13840993 1.6e-05 97_[+2]_15 chr2L:3757116-3757236 1.6e-05 66_[+2]_46 chr2L:5145260-5145380 1.6e-05 35_[+2]_77 chr2R:18401886-18402006 1.6e-05 84_[+2]_28 chrX:12085827-12085947 1.6e-05 103_[+2]_9 chr2R:8722473-8722593 1.6e-05 23_[+2]_89 chrX:278068-278188 1.6e-05 8_[+2]_104 chr2L:13878099-13878219 1.6e-05 112_[+2] chr3L:4062076-4062196 1.6e-05 61_[+2]_51 chr3L:17238431-17238551 1.6e-05 69_[+2]_43 chr2R:10918379-10918499 1.6e-05 6_[+2]_106 chr3L:3746716-3746836 1.6e-05 92_[+2]_20 chr2R:11107599-11107719 1.6e-05 48_[+2]_64 chr3L:3280093-3280213 1.6e-05 99_[+2]_13 chr2L:8346424-8346544 1.6e-05 104_[+2]_8 chr2R:15390252-15390372 1.6e-05 49_[+2]_63 chr3R:15077362-15077482 1.6e-05 57_[+2]_55 chr3L:3749618-3749738 1.6e-05 79_[+2]_33 chr2L:11879077-11879197 1.6e-05 67_[+2]_45 chr2L:19918006-19918126 1.6e-05 62_[+2]_50 chr2L:5659268-5659388 1.6e-05 43_[+2]_69 chrX:13395093-13395213 1.6e-05 71_[+2]_41 chr3R:4077787-4077907 1.6e-05 27_[+2]_85 chr3R:14580219-14580339 1.6e-05 61_[+2]_51 chr3L:4073901-4074021 1.6e-05 107_[+2]_5 chr3R:14065826-14065946 1.6e-05 81_[+2]_31 chr3L:882967-883087 3.1e-05 22_[+2]_90 chr2R:11662803-11662923 3.1e-05 51_[+2]_61 chrX:3684921-3685041 3.1e-05 40_[+2]_72 chr2R:11756483-11756603 3.1e-05 30_[+2]_82 chrX:17871162-17871282 3.1e-05 39_[+2]_73 chr2L:13036126-13036246 3.1e-05 63_[+2]_49 chrX:5744477-5744597 3.1e-05 55_[+2]_57 chr2R:11757733-11757853 3.1e-05 36_[+2]_76 chr2L:21141872-21141992 3.1e-05 64_[+2]_48 chr2L:13035922-13036042 3.1e-05 11_[+2]_101 chr3R:19503399-19503519 3.1e-05 44_[+2]_68 chr2R:14449082-14449202 3.1e-05 9_[+2]_103 chr2L:7855309-7855429 3.1e-05 35_[+2]_77 chr3L:16452074-16452194 3.1e-05 93_[+2]_19 chr2R:18406874-18406994 3.1e-05 [+2]_112 chr3R:13554192-13554312 3.1e-05 59_[+2]_53 chr3R:16876790-16876910 3.1e-05 103_[+2]_9 chr3R:18931876-18931996 3.1e-05 104_[+2]_8 chr2L:3426026-3426146 3.1e-05 25_[+2]_87 chr3R:4236535-4236655 5e-05 2_[+2]_110 chr3R:29829529-29829649 5e-05 87_[+2]_25 chr3L:9501461-9501581 5e-05 85_[+2]_27 chr2L:3648514-3648634 5e-05 56_[+2]_56 chr3R:11172972-11173092 5e-05 38_[+2]_74 chr2L:22148842-22148962 5e-05 102_[+2]_10 chr3R:18481865-18481985 5e-05 79_[+2]_33 chr2L:18395398-18395518 5e-05 45_[+2]_67 chr3L:2400392-2400512 5e-05 16_[+2]_96 chr2L:22117805-22117925 5e-05 84_[+2]_28 chr2L:19917109-19917229 5e-05 43_[+2]_69 chr3L:21994122-21994242 5e-05 79_[+2]_33 chr2L:13113752-13113872 5e-05 61_[+2]_51 chr2R:14814364-14814484 5e-05 75_[+2]_37 chr3R:25759503-25759623 6.9e-05 2_[+2]_110 chr3R:25783205-25783325 6.9e-05 20_[+2]_92 chr2R:16335913-16336033 6.9e-05 62_[+2]_50 chr3L:3747423-3747543 6.9e-05 52_[+2]_60 chr3R:17505942-17506062 6.9e-05 20_[+2]_92 chr3R:9979116-9979236 6.9e-05 25_[+2]_87 chr2L:20242902-20243022 6.9e-05 96_[+2]_16 chrX:10333506-10333626 6.9e-05 32_[+2]_80 chr2R:15610013-15610133 6.9e-05 82_[+2]_30 chr3R:18621332-18621452 6.9e-05 84_[+2]_28 chrX:18665865-18665985 6.9e-05 80_[+2]_32 chr3R:7753695-7753815 6.9e-05 2_[+2]_110 chr2L:7243763-7243883 6.9e-05 81_[+2]_31 chr2L:16852348-16852468 6.9e-05 37_[+2]_75 chr2L:16794125-16794245 6.9e-05 53_[+2]_59 chr3L:19482133-19482253 6.9e-05 41_[+2]_71 chr3R:30552812-30552932 6.9e-05 76_[+2]_36 chr2R:8131808-8131928 8.3e-05 54_[+2]_58 chr3R:7310721-7310841 8.3e-05 17_[+2]_95 chr2R:15600406-15600526 8.3e-05 93_[+2]_19 chr4:893640-893760 8.3e-05 81_[+2]_31 chr3R:17506930-17507050 0.00011 108_[+2]_4 chrX:19788218-19788338 0.00011 35_[+2]_77 chrX:4840699-4840819 0.00011 49_[+2]_63 chr3R:13796759-13796879 0.00011 16_[+2]_96 chr2R:15400914-15401034 0.00011 43_[+2]_69 chrX:20083890-20084010 0.00011 58_[+2]_54 chr3R:16128634-16128754 0.00011 8_[+2]_104 chr2R:8444194-8444314 0.00011 92_[+2]_20 chr3L:7189787-7189907 0.00011 9_[+2]_103 chrX:5282169-5282289 0.00012 34_[+2]_78 chr3R:30545149-30545269 0.00012 44_[+2]_68 chr3R:13789772-13789892 0.00012 43_[+2]_69 chr3R:20564081-20564201 0.00012 61_[+2]_51 chr3L:13934970-13935090 0.00012 75_[+2]_37 chr3L:10187014-10187134 0.00012 71_[+2]_41 chr3R:25331155-25331275 0.00017 90_[+2]_22 chr2L:7887447-7887567 0.00017 84_[+2]_28 chr3R:23605623-23605743 0.00017 36_[+2]_76 chr3R:4083775-4083895 0.00017 68_[+2]_44 chr3R:31168532-31168652 0.00017 107_[+2]_5 chr2L:15332709-15332829 0.00017 95_[+2]_17 chr2R:11116554-11116674 0.00017 97_[+2]_15 chrX:2324020-2324140 0.00017 62_[+2]_50 chr2L:17621335-17621455 0.00017 77_[+2]_35 chr3L:22960454-22960574 0.00017 49_[+2]_63 chr3L:16073253-16073373 0.00017 48_[+2]_64 chr3R:6460765-6460885 0.0002 103_[+2]_9 chr3R:7306837-7306957 0.0002 83_[+2]_29 chrX:5418642-5418762 0.0002 5_[+2]_107 chr3R:31499047-31499167 0.0002 13_[+2]_99 chr3L:11428516-11428636 0.0002 39_[+2]_73 chr2L:6792154-6792274 0.00022 85_[+2]_27 chr2L:22145636-22145756 0.00022 56_[+2]_56 chr3L:22998329-22998449 0.00022 82_[+2]_30 chr3L:180145-180265 0.00025 68_[+2]_44 chr3L:15494021-15494141 0.00025 94_[+2]_18 chr3R:27075748-27075868 0.00025 4_[+2]_108 chrX:7695742-7695862 0.00027 51_[+2]_61 chr3L:17549332-17549452 0.00029 29_[+2]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTTW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCTCTTW width=8 seqs=126 chr2R:8272838-8272958 ( 57) CTCTCTTA 1 chr3R:6474534-6474654 ( 106) CTCTCTTA 1 chr2L:19809790-19809910 ( 11) CTCTCTTA 1 chr3R:12080738-12080858 ( 71) CTCTCTTA 1 chr2R:18404476-18404596 ( 69) CTCTCTTA 1 chr3R:5716808-5716928 ( 105) CTCTCTTA 1 chrX:7092016-7092136 ( 43) CTCTCTTA 1 chr3L:13840873-13840993 ( 98) CTCTCTTA 1 chr2L:3757116-3757236 ( 67) CTCTCTTA 1 chr2L:5145260-5145380 ( 36) CTCTCTTA 1 chr2R:18401886-18402006 ( 85) CTCTCTTA 1 chrX:12085827-12085947 ( 104) CTCTCTTA 1 chr2R:8722473-8722593 ( 24) CTCTCTTA 1 chrX:278068-278188 ( 9) CTCTCTTA 1 chr2L:13878099-13878219 ( 113) CTCTCTTA 1 chr3L:4062076-4062196 ( 62) CTCTCTTA 1 chr3L:17238431-17238551 ( 70) CTCTCTTA 1 chr2R:10918379-10918499 ( 7) CTCTCTTA 1 chr3L:3746716-3746836 ( 93) CTCTCTTA 1 chr2R:11107599-11107719 ( 49) CTCTCTTA 1 chr3L:3280093-3280213 ( 100) CTCTCTTA 1 chr2L:8346424-8346544 ( 105) CTCTCTTA 1 chr2R:15390252-15390372 ( 50) CTCTCTTA 1 chr3R:15077362-15077482 ( 58) CTCTCTTA 1 chr3L:3749618-3749738 ( 80) CTCTCTTA 1 chr2L:11879077-11879197 ( 68) CTCTCTTA 1 chr2L:19918006-19918126 ( 63) CTCTCTTA 1 chr2L:5659268-5659388 ( 44) CTCTCTTA 1 chrX:13395093-13395213 ( 72) CTCTCTTA 1 chr3R:4077787-4077907 ( 28) CTCTCTTA 1 chr3R:14580219-14580339 ( 62) CTCTCTTA 1 chr3L:4073901-4074021 ( 108) CTCTCTTA 1 chr3R:14065826-14065946 ( 82) CTCTCTTA 1 chr3L:882967-883087 ( 23) CTCTCTTT 1 chr2R:11662803-11662923 ( 52) CTCTCTTT 1 chrX:3684921-3685041 ( 41) CTCTCTTT 1 chr2R:11756483-11756603 ( 31) CTCTCTTT 1 chrX:17871162-17871282 ( 40) CTCTCTTT 1 chr2L:13036126-13036246 ( 64) CTCTCTTT 1 chrX:5744477-5744597 ( 56) CTCTCTTT 1 chr2R:11757733-11757853 ( 37) CTCTCTTT 1 chr2L:21141872-21141992 ( 65) CTCTCTTT 1 chr2L:13035922-13036042 ( 12) CTCTCTTT 1 chr3R:19503399-19503519 ( 45) CTCTCTTT 1 chr2R:14449082-14449202 ( 10) CTCTCTTT 1 chr2L:7855309-7855429 ( 36) CTCTCTTT 1 chr3L:16452074-16452194 ( 94) CTCTCTTT 1 chr2R:18406874-18406994 ( 1) CTCTCTTT 1 chr3R:13554192-13554312 ( 60) CTCTCTTT 1 chr3R:16876790-16876910 ( 104) CTCTCTTT 1 chr3R:18931876-18931996 ( 105) CTCTCTTT 1 chr2L:3426026-3426146 ( 26) CTCTCTTT 1 chr3R:4236535-4236655 ( 3) TTCTCTTA 1 chr3R:29829529-29829649 ( 88) TTCTCTTA 1 chr3L:9501461-9501581 ( 86) TTCTCTTA 1 chr2L:3648514-3648634 ( 57) TTCTCTTA 1 chr3R:11172972-11173092 ( 39) TTCTCTTA 1 chr2L:22148842-22148962 ( 103) TTCTCTTA 1 chr3R:18481865-18481985 ( 80) TTCTCTTA 1 chr2L:18395398-18395518 ( 46) TTCTCTTA 1 chr3L:2400392-2400512 ( 17) TTCTCTTA 1 chr2L:22117805-22117925 ( 85) TTCTCTTA 1 chr2L:19917109-19917229 ( 44) TTCTCTTA 1 chr3L:21994122-21994242 ( 80) TTCTCTTA 1 chr2L:13113752-13113872 ( 62) TTCTCTTA 1 chr2R:14814364-14814484 ( 76) TTCTCTTA 1 chr3R:25759503-25759623 ( 3) TTCTCTTT 1 chr3R:25783205-25783325 ( 21) TTCTCTTT 1 chr2R:16335913-16336033 ( 63) TTCTCTTT 1 chr3L:3747423-3747543 ( 53) TTCTCTTT 1 chr3R:17505942-17506062 ( 21) TTCTCTTT 1 chr3R:9979116-9979236 ( 26) TTCTCTTT 1 chr2L:20242902-20243022 ( 97) TTCTCTTT 1 chrX:10333506-10333626 ( 33) TTCTCTTT 1 chr2R:15610013-15610133 ( 83) TTCTCTTT 1 chr3R:18621332-18621452 ( 85) TTCTCTTT 1 chrX:18665865-18665985 ( 81) TTCTCTTT 1 chr3R:7753695-7753815 ( 3) TTCTCTTT 1 chr2L:7243763-7243883 ( 82) TTCTCTTT 1 chr2L:16852348-16852468 ( 38) TTCTCTTT 1 chr2L:16794125-16794245 ( 54) TTCTCTTT 1 chr3L:19482133-19482253 ( 42) TTCTCTTT 1 chr3R:30552812-30552932 ( 77) TTCTCTTT 1 chr2R:8131808-8131928 ( 55) CGCTCTTA 1 chr3R:7310721-7310841 ( 18) CGCTCTTA 1 chr2R:15600406-15600526 ( 94) CGCTCTTA 1 chr4:893640-893760 ( 82) CGCTCTTA 1 chr3R:17506930-17507050 ( 109) CGCTCTTT 1 chrX:19788218-19788338 ( 36) CTCTCTTC 1 chrX:4840699-4840819 ( 50) CGCTCTTT 1 chr3R:13796759-13796879 ( 17) CTCTCTTC 1 chr2R:15400914-15401034 ( 44) CGCTCTTT 1 chrX:20083890-20084010 ( 59) CTCTCTTC 1 chr3R:16128634-16128754 ( 9) CTCTCTTC 1 chr2R:8444194-8444314 ( 93) CTCTCTTC 1 chr3L:7189787-7189907 ( 10) CTCTCTTC 1 chrX:5282169-5282289 ( 35) TGCTCTTA 1 chr3R:30545149-30545269 ( 45) TGCTCTTA 1 chr3R:13789772-13789892 ( 44) TGCTCTTA 1 chr3R:20564081-20564201 ( 62) TGCTCTTA 1 chr3L:13934970-13935090 ( 76) TGCTCTTA 1 chr3L:10187014-10187134 ( 72) TGCTCTTA 1 chr3R:25331155-25331275 ( 91) TTCTCTTC 1 chr2L:7887447-7887567 ( 85) TGCTCTTT 1 chr3R:23605623-23605743 ( 37) TGCTCTTT 1 chr3R:4083775-4083895 ( 69) CTCTCTTG 1 chr3R:31168532-31168652 ( 108) CTCTCTTG 1 chr2L:15332709-15332829 ( 96) TGCTCTTT 1 chr2R:11116554-11116674 ( 98) TTCTCTTC 1 chrX:2324020-2324140 ( 63) TGCTCTTT 1 chr2L:17621335-17621455 ( 78) TGCTCTTT 1 chr3L:22960454-22960574 ( 50) TGCTCTTT 1 chr3L:16073253-16073373 ( 49) TGCTCTTT 1 chr3R:6460765-6460885 ( 104) CGCTCTTC 1 chr3R:7306837-7306957 ( 84) CGCTCTTC 1 chrX:5418642-5418762 ( 6) CGCTCTTC 1 chr3R:31499047-31499167 ( 14) CGCTCTTC 1 chr3L:11428516-11428636 ( 40) TTCTCTTG 1 chr2L:6792154-6792274 ( 86) CGCTCTTG 1 chr2L:22145636-22145756 ( 57) CGCTCTTG 1 chr3L:22998329-22998449 ( 83) CGCTCTTG 1 chr3L:180145-180265 ( 69) TGCTCTTG 1 chr3L:15494021-15494141 ( 95) TGCTCTTG 1 chr3R:27075748-27075868 ( 5) CACTCTTA 1 chrX:7695742-7695862 ( 52) CACTCTTT 1 chr3L:17549332-17549452 ( 30) TACTCTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTTW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.11661 E= 1.1e-118 -1362 144 -1362 56 -355 -1362 0 148 -1362 217 -1362 -1362 -1362 -1362 -1362 190 -1362 217 -1362 -1362 -1362 -1362 -1362 190 -1362 -1362 -1362 190 75 -122 -186 48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTTW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 1.1e-118 0.000000 0.603175 0.000000 0.396825 0.023810 0.000000 0.230159 0.746032 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.468254 0.095238 0.063492 0.373016 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTCTTW MEME-2 regular expression -------------------------------------------------------------------------------- [CT][TG]CTCTT[AT] -------------------------------------------------------------------------------- Time 13.22 secs. ******************************************************************************** ******************************************************************************** MOTIF WAAGAGAR MEME-3 width = 8 sites = 105 llr = 785 E-value = 1.9e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAAGAGAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5aa:a:63 pos.-specific C 1:::::31 probability G 1::a:a:4 matrix T 3:::::12 bits 2.2 * * 2.0 * * 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (10.8 bits) 0.9 ***** 0.7 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel AAAGAGAG consensus T CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAGAGAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5670170-5670290 109 2.06e-05 AGTGGCGTTG AAAGAGAG GAAG chr3R:16899107-16899227 41 2.06e-05 AAATATAAGC AAAGAGAG TTGGAAAGAG chr2L:16231412-16231532 21 2.06e-05 GGATTGTCCC AAAGAGAG GAGCTGGCAT chr3R:7310721-7310841 77 2.06e-05 tgcgagcgtg aaagagag ggtgtgagtg chrX:12085827-12085947 73 2.06e-05 GTTTGATGCT AAAGAGAG CCAGTAAATA chr3R:20484606-20484726 113 2.06e-05 ACTCGAAGTG AAAGAGAG chr3R:29215810-29215930 69 2.06e-05 CGAGTGCACA AAAGAGAG GGAAAGAGAG chrX:7695942-7696062 84 2.06e-05 ACAGCCGGAG AAAGAGAG GGATATAAAC chr2L:21618057-21618177 63 2.06e-05 CCTAGGTATT AAAGAGAG GGTGGAGGGA chr3L:15494021-15494141 50 4.55e-05 GGGTGCTTCT AAAGAGAA AGTGTGAAGA chr2R:17794282-17794402 90 4.55e-05 GGAAGCCGAG AAAGAGAA GCCGAAGCAA chrX:14082882-14083002 77 4.55e-05 GTTGCAGCTC AAAGAGAA CTGTGTCGCA chrX:10801228-10801348 62 4.55e-05 AGTGGGGGAA Aaagagaa taagacggga chr3L:4625543-4625663 96 4.55e-05 GAAAAGTCGG AAAGAGAA AAGCTGCGCA chr2R:10225302-10225422 36 4.55e-05 AAGCAGCGCg aaagagaa agaaagagag chr3R:17505942-17506062 91 4.55e-05 AGAGGACCTA AAAGAGAA ATAAAAGAGA chr3L:21319450-21319570 95 4.55e-05 TCAAAATCGC AAAGAGAA AGTAACAAAA chr3R:18481865-18481985 98 4.55e-05 CTCGACGTTC AAAGAGAA TGCATAAGAA chr2L:16234908-16235028 21 4.55e-05 CTAACATTCT AAAGAGAA AGCCGTTCCT chr2L:14180791-14180911 34 4.55e-05 CAATCTGGCC AAAGAGAA AGCAAAGAGC chr3L:15494979-15495099 86 4.55e-05 AAGAGAGCCA AAAGAGAA AGACGGGCAG chr2L:15332709-15332829 82 4.55e-05 CAATTGGCTT AAAGAGAA TGCTTATGCT chr3L:12788601-12788721 32 4.55e-05 GCAATACTGT AAAGAGAA AGGATGAAGA chr3R:12367619-12367739 65 4.55e-05 CCCTGGCATC AAAGAGAA AATAACGAGC chr3L:22788069-22788189 92 4.55e-05 gaaaagaaaa aaagagaa aagaagagaa chr2L:6742101-6742221 97 6.53e-05 ACCAATATTT TAAGAGAG TTTTGCACCA chr3R:31119897-31120017 33 6.53e-05 GAGACTGGGC TAAGAGAG GGCTGAAGAG chr3R:27223167-27223287 26 6.53e-05 AACGAGTGGC TAAGAGAG TTTTCGACGG chr2L:18395398-18395518 67 6.53e-05 TACAAGCTTT TAAGAGAG TTATAGAATA chr2R:8407898-8408018 62 6.53e-05 CTTAACAGCG TAAGAGAG TCCCCGGTTA chr3L:17211698-17211818 88 6.53e-05 AGAGAGCATT TAAGAGAG CCGCACGCCT chr3L:19482133-19482253 93 6.53e-05 TAAGAGAATG TAAGAGAG GAGGTCTGAA chrX:20083890-20084010 34 8.17e-05 AAGATGGCCG AAAGAGCG GACCGAAGAG chr3R:16933464-16933584 61 8.17e-05 CACACTGCCT AAAGAGCG GGCGAAGAGA chr2L:4995523-4995643 86 8.17e-05 TACCAAGTGG AAAGAGCG ATGGCAAAAG chr3R:11483470-11483590 49 8.17e-05 GGCTTGGCCC AAAGAGCG AAATATCGCG chr3R:31499047-31499167 38 8.17e-05 GAGAGCTGGC AAAGAGCG GCTGTTTGTC chr2L:10208985-10209105 73 8.17e-05 GGCAAAAAAT AAAGAGCG AAAAAAAAGA chr2L:6941902-6942022 28 8.17e-05 AACTCAAACG AAAGAGCG CGATGCGAAG chr3R:22124207-22124327 36 8.17e-05 TCTAATGCTC AAAGAGCG GCAAAGTCGC chr3R:8523659-8523779 48 1.06e-04 GAGAAATATC TAAGAGAA TTCGTAGAGC chr3R:19486281-19486401 54 1.06e-04 GATCGTGGAG TAAGAGAA ATTTAAAGAG chr2L:13084518-13084638 36 1.06e-04 GATTCACGGC TAAGAGAA GAGCACACCG chr3R:7658168-7658288 7 1.06e-04 TACATC TAAGAGAA GATCGTGTCG chr3R:17366308-17366428 57 1.06e-04 TGGTCATGGT TAAGAGAA TTATGTCTGT chr3R:5199694-5199814 26 1.06e-04 GAAAGTGAAT TAAGAGAA TGTAATGGCC chr3L:13934970-13935090 95 1.06e-04 CATTTAATTT TAAGAGAA TTTGTATTTT chr3L:16935576-16935696 58 1.06e-04 CGATCAGGTG TAAGAGAA CTGGGTTTTG chr3R:17920415-17920535 93 1.06e-04 GCTCGAGGAG TAAGAGAA AGCAGCCATT chr2R:18401886-18402006 14 1.26e-04 CTGATAACTA AAAGAGCA CGGAAATATT chr3L:11247920-11248040 108 1.65e-04 AAAGAGAACT TAAGAGCG GCCGT chr2R:21361997-21362117 22 1.65e-04 TGGTGAACCC TAAGAGCG CGCGTCGAAG chr3L:2322513-2322633 22 1.65e-04 ACTTCCGGCT TAAGAGCG ACCCTTTGCA chr2L:8433649-8433769 62 1.65e-04 AGCGCCCCCA AAAGAGAT GCGATTGCGA chr2R:19380372-19380492 89 1.65e-04 GAGAATTTGG AAAGAGAT CTGTTCAGTG chr3L:13667879-13667999 77 1.65e-04 GAGAGTTCTC TAAGAGCG AGAGTCCTTG chr2R:11231924-11232044 37 1.65e-04 AGTCCGAACG AAAGAGAT AATCTGGTCA chr3R:13538854-13538974 54 1.65e-04 GTGCCAAGTT TAAGAGCG TTCGCTTTCG chr2R:19691960-19692080 79 1.85e-04 AGAGAGCATT AAAGAGAC AAAAATCCAA chr2L:6792154-6792274 78 2.64e-04 gtgtgtttgt TAAGAGAT CGCTCTTGAT chr2R:10134824-10134944 35 2.64e-04 AGTGGAAAGC TAAGAGAT CAGTTAAGAG chr3R:7306837-7306957 54 2.64e-04 TGCTTTCCCC GAAGAGAG AAAGAGAGAG chr2R:15600406-15600526 78 2.64e-04 CTGCCGGCCG TAAGAGAT TGGAAAAGCG chr2L:14038913-14039033 53 2.64e-04 GGAAGGTAAC TAAGAGAT TAAAGCTCTG chr3L:7716423-7716543 36 2.64e-04 GGCCAAAAGT AAAGAGTG GCGTAAAGAG chr2R:5990208-5990328 44 2.64e-04 AAATAAGTTG AAAGAGTG AGCAGGAAGG chr3L:11428516-11428636 27 2.64e-04 CGCTGAGAAC TAAGAGAT CAGCTTTCTC chr3L:10187014-10187134 40 2.64e-04 GGAATTTGGC AAAGAGTG CGCATGCACT chr3L:5537563-5537683 39 2.64e-04 GGCTGCGATC TAAGAGAT TGCGTAGAGA chr2L:7832868-7832988 4 2.64e-04 GAC GAAGAGAG CCATCGAAGA chr3R:19495316-19495436 79 3.03e-04 ATTTGCGGGT AAAGAGCT CTCCGTTGAG chr2L:3648514-3648634 26 3.03e-04 TACACCAAGC TAAGAGAC TTTTGTCGAT chr3R:30545149-30545269 19 3.03e-04 GTGCGTGCCG AAAGAGCT AATTATCGAA chr2L:16234163-16234283 73 3.03e-04 CCCGCACTGA AAAGAGCT AAAGAGCGGA chr2L:17621335-17621455 1 3.03e-04 . AAAGAGCT GGGAGAACTC chr3R:29829529-29829649 30 3.18e-04 CGGCGCGTGA AAAGAGCC CAGTCGAGCC chr3R:13796759-13796879 45 3.18e-04 TCTTGGTTCT AAAGAGCC AGGTGAAATG chr3R:6958574-6958694 32 3.18e-04 AGAGTGAGAT AAAGAGCC CGCATAGCCA chr3L:3280093-3280213 66 3.18e-04 CCAACTTTCC AAAGAGCC GCTCCATGAG chr2L:13036126-13036246 22 3.63e-04 GACTTTTTGC GAAGAGAA GCCTTAAGAG chr2L:14300839-14300959 63 3.63e-04 TATGTGTGGC GAAGAGAA TGTAAAGCGC chr3L:2169085-2169205 108 3.63e-04 ACGCCGATAG AAAGAGTA GCTGT chr3R:20564081-20564201 79 3.82e-04 AACATTCGCC TAAGAGTG GGAGCTTTTT chr3L:5902505-5902625 92 3.82e-04 AGAGAGTTTT TAAGAGTG AATCATGTTG chr2L:245760-245880 15 4.30e-04 AAACAGAGCC GAAGAGCG GCTGAAGCAA chr3R:22124915-22125035 33 4.30e-04 AGCGGCCAAC GAAGAGCG AACGAAGAGA chrX:12202898-12203018 69 4.69e-04 GATGCTGGTA TAAGAGTA GCTCCTGAAA chr3R:19503399-19503519 28 4.69e-04 AGTGCGAATT TAAGAGTA TTTTTCGTAC chr2R:7888206-7888326 90 5.05e-04 CCAGGCAGAT GAAGAGCA CTCGGTTGGC chr3R:25735687-25735807 59 5.05e-04 TAAATGTTGG CAAGAGAA GTGAATTCGT chr2L:790759-790879 92 5.05e-04 AGAGAGAAAA CAAGAGAA GTGGGCCGTT chr3R:24485137-24485257 38 5.05e-04 TTAACCCATC GAAGAGCA CATCTTCAGA chr2R:11930322-11930442 101 5.97e-04 ATAGAGACCT AAAGAGTC CCAAAATCGG chr3R:4083775-4083895 103 5.97e-04 TCATCCTCAC AAAGAGTC GATTTTCTGG chr2L:11903561-11903681 99 5.97e-04 GCGAGCATTT CAAGAGCG GAAGCTCTCC chr3L:7787937-7788057 9 5.97e-04 GCGAGCAA AAAGAGTC GAAAAGCCAA chr3R:31168532-31168652 60 5.97e-04 CGCTGAAGCC AAAGAGTC GCAATACACA chr2L:7243763-7243883 8 5.97e-04 AAAAGCC AAAGAGTC AGCCGAAGAG chr3R:25316089-25316209 27 6.51e-04 CTAAGCAAAC TAAGAGTT TATTTGCCGG chr4:555083-555203 66 7.04e-04 CGTATATGTT CAAGAGAT TTTTTTAAGA chr2L:16852348-16852468 94 7.04e-04 AGAGCGTACT CAAGAGAT TGTGTACACG chr3R:4077787-4077907 74 7.04e-04 TTACTCTTAA CAAGAGAT GCCGAGAGTG chr3R:23605623-23605743 21 7.33e-04 ACAAATTTTC GAAGAGCC GAACGCCATG chrX:2324020-2324140 50 7.33e-04 CCCACACAGC GAAGAGCC CTTGCTGCTC chr3L:17238431-17238551 19 7.53e-04 CCGCAGCGAG GAAGAGTA GCCGGCGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAGAGAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5670170-5670290 2.1e-05 108_[+3]_4 chr3R:16899107-16899227 2.1e-05 40_[+3]_72 chr2L:16231412-16231532 2.1e-05 20_[+3]_92 chr3R:7310721-7310841 2.1e-05 76_[+3]_36 chrX:12085827-12085947 2.1e-05 72_[+3]_40 chr3R:20484606-20484726 2.1e-05 112_[+3] chr3R:29215810-29215930 2.1e-05 68_[+3]_44 chrX:7695942-7696062 2.1e-05 83_[+3]_29 chr2L:21618057-21618177 2.1e-05 62_[+3]_50 chr3L:15494021-15494141 4.6e-05 49_[+3]_63 chr2R:17794282-17794402 4.6e-05 89_[+3]_23 chrX:14082882-14083002 4.6e-05 76_[+3]_36 chrX:10801228-10801348 4.6e-05 61_[+3]_51 chr3L:4625543-4625663 4.6e-05 95_[+3]_17 chr2R:10225302-10225422 4.6e-05 35_[+3]_77 chr3R:17505942-17506062 4.6e-05 90_[+3]_22 chr3L:21319450-21319570 4.6e-05 94_[+3]_18 chr3R:18481865-18481985 4.6e-05 97_[+3]_15 chr2L:16234908-16235028 4.6e-05 20_[+3]_92 chr2L:14180791-14180911 4.6e-05 33_[+3]_79 chr3L:15494979-15495099 4.6e-05 85_[+3]_27 chr2L:15332709-15332829 4.6e-05 81_[+3]_31 chr3L:12788601-12788721 4.6e-05 31_[+3]_81 chr3R:12367619-12367739 4.6e-05 64_[+3]_48 chr3L:22788069-22788189 4.6e-05 91_[+3]_21 chr2L:6742101-6742221 6.5e-05 96_[+3]_16 chr3R:31119897-31120017 6.5e-05 32_[+3]_80 chr3R:27223167-27223287 6.5e-05 25_[+3]_87 chr2L:18395398-18395518 6.5e-05 66_[+3]_46 chr2R:8407898-8408018 6.5e-05 61_[+3]_51 chr3L:17211698-17211818 6.5e-05 87_[+3]_25 chr3L:19482133-19482253 6.5e-05 92_[+3]_20 chrX:20083890-20084010 8.2e-05 33_[+3]_79 chr3R:16933464-16933584 8.2e-05 60_[+3]_52 chr2L:4995523-4995643 8.2e-05 85_[+3]_27 chr3R:11483470-11483590 8.2e-05 48_[+3]_64 chr3R:31499047-31499167 8.2e-05 37_[+3]_75 chr2L:10208985-10209105 8.2e-05 72_[+3]_40 chr2L:6941902-6942022 8.2e-05 27_[+3]_85 chr3R:22124207-22124327 8.2e-05 35_[+3]_77 chr3R:8523659-8523779 0.00011 47_[+3]_65 chr3R:19486281-19486401 0.00011 53_[+3]_59 chr2L:13084518-13084638 0.00011 35_[+3]_77 chr3R:7658168-7658288 0.00011 6_[+3]_106 chr3R:17366308-17366428 0.00011 56_[+3]_56 chr3R:5199694-5199814 0.00011 25_[+3]_87 chr3L:13934970-13935090 0.00011 94_[+3]_18 chr3L:16935576-16935696 0.00011 57_[+3]_55 chr3R:17920415-17920535 0.00011 92_[+3]_20 chr2R:18401886-18402006 0.00013 13_[+3]_99 chr3L:11247920-11248040 0.00017 107_[+3]_5 chr2R:21361997-21362117 0.00017 21_[+3]_91 chr3L:2322513-2322633 0.00017 21_[+3]_91 chr2L:8433649-8433769 0.00017 61_[+3]_51 chr2R:19380372-19380492 0.00017 88_[+3]_24 chr3L:13667879-13667999 0.00017 76_[+3]_36 chr2R:11231924-11232044 0.00017 36_[+3]_76 chr3R:13538854-13538974 0.00017 53_[+3]_59 chr2R:19691960-19692080 0.00019 78_[+3]_34 chr2L:6792154-6792274 0.00026 77_[+3]_35 chr2R:10134824-10134944 0.00026 34_[+3]_78 chr3R:7306837-7306957 0.00026 53_[+3]_59 chr2R:15600406-15600526 0.00026 77_[+3]_35 chr2L:14038913-14039033 0.00026 52_[+3]_60 chr3L:7716423-7716543 0.00026 35_[+3]_77 chr2R:5990208-5990328 0.00026 43_[+3]_69 chr3L:11428516-11428636 0.00026 26_[+3]_86 chr3L:10187014-10187134 0.00026 39_[+3]_73 chr3L:5537563-5537683 0.00026 38_[+3]_74 chr2L:7832868-7832988 0.00026 3_[+3]_109 chr3R:19495316-19495436 0.0003 78_[+3]_34 chr2L:3648514-3648634 0.0003 25_[+3]_87 chr3R:30545149-30545269 0.0003 18_[+3]_94 chr2L:16234163-16234283 0.0003 72_[+3]_40 chr2L:17621335-17621455 0.0003 [+3]_112 chr3R:29829529-29829649 0.00032 29_[+3]_83 chr3R:13796759-13796879 0.00032 44_[+3]_68 chr3R:6958574-6958694 0.00032 31_[+3]_81 chr3L:3280093-3280213 0.00032 65_[+3]_47 chr2L:13036126-13036246 0.00036 21_[+3]_91 chr2L:14300839-14300959 0.00036 62_[+3]_50 chr3L:2169085-2169205 0.00036 107_[+3]_5 chr3R:20564081-20564201 0.00038 78_[+3]_34 chr3L:5902505-5902625 0.00038 91_[+3]_21 chr2L:245760-245880 0.00043 14_[+3]_98 chr3R:22124915-22125035 0.00043 32_[+3]_80 chrX:12202898-12203018 0.00047 68_[+3]_44 chr3R:19503399-19503519 0.00047 27_[+3]_85 chr2R:7888206-7888326 0.00051 89_[+3]_23 chr3R:25735687-25735807 0.00051 58_[+3]_54 chr2L:790759-790879 0.00051 91_[+3]_21 chr3R:24485137-24485257 0.00051 37_[+3]_75 chr2R:11930322-11930442 0.0006 100_[+3]_12 chr3R:4083775-4083895 0.0006 102_[+3]_10 chr2L:11903561-11903681 0.0006 98_[+3]_14 chr3L:7787937-7788057 0.0006 8_[+3]_104 chr3R:31168532-31168652 0.0006 59_[+3]_53 chr2L:7243763-7243883 0.0006 7_[+3]_105 chr3R:25316089-25316209 0.00065 26_[+3]_86 chr4:555083-555203 0.0007 65_[+3]_47 chr2L:16852348-16852468 0.0007 93_[+3]_19 chr3R:4077787-4077907 0.0007 73_[+3]_39 chr3R:23605623-23605743 0.00073 20_[+3]_92 chrX:2324020-2324140 0.00073 49_[+3]_63 chr3L:17238431-17238551 0.00075 18_[+3]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAGAGAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAAGAGAR width=8 seqs=105 chr3R:5670170-5670290 ( 109) AAAGAGAG 1 chr3R:16899107-16899227 ( 41) AAAGAGAG 1 chr2L:16231412-16231532 ( 21) AAAGAGAG 1 chr3R:7310721-7310841 ( 77) AAAGAGAG 1 chrX:12085827-12085947 ( 73) AAAGAGAG 1 chr3R:20484606-20484726 ( 113) AAAGAGAG 1 chr3R:29215810-29215930 ( 69) AAAGAGAG 1 chrX:7695942-7696062 ( 84) AAAGAGAG 1 chr2L:21618057-21618177 ( 63) AAAGAGAG 1 chr3L:15494021-15494141 ( 50) AAAGAGAA 1 chr2R:17794282-17794402 ( 90) AAAGAGAA 1 chrX:14082882-14083002 ( 77) AAAGAGAA 1 chrX:10801228-10801348 ( 62) AAAGAGAA 1 chr3L:4625543-4625663 ( 96) AAAGAGAA 1 chr2R:10225302-10225422 ( 36) AAAGAGAA 1 chr3R:17505942-17506062 ( 91) AAAGAGAA 1 chr3L:21319450-21319570 ( 95) AAAGAGAA 1 chr3R:18481865-18481985 ( 98) AAAGAGAA 1 chr2L:16234908-16235028 ( 21) AAAGAGAA 1 chr2L:14180791-14180911 ( 34) AAAGAGAA 1 chr3L:15494979-15495099 ( 86) AAAGAGAA 1 chr2L:15332709-15332829 ( 82) AAAGAGAA 1 chr3L:12788601-12788721 ( 32) AAAGAGAA 1 chr3R:12367619-12367739 ( 65) AAAGAGAA 1 chr3L:22788069-22788189 ( 92) AAAGAGAA 1 chr2L:6742101-6742221 ( 97) TAAGAGAG 1 chr3R:31119897-31120017 ( 33) TAAGAGAG 1 chr3R:27223167-27223287 ( 26) TAAGAGAG 1 chr2L:18395398-18395518 ( 67) TAAGAGAG 1 chr2R:8407898-8408018 ( 62) TAAGAGAG 1 chr3L:17211698-17211818 ( 88) TAAGAGAG 1 chr3L:19482133-19482253 ( 93) TAAGAGAG 1 chrX:20083890-20084010 ( 34) AAAGAGCG 1 chr3R:16933464-16933584 ( 61) AAAGAGCG 1 chr2L:4995523-4995643 ( 86) AAAGAGCG 1 chr3R:11483470-11483590 ( 49) AAAGAGCG 1 chr3R:31499047-31499167 ( 38) AAAGAGCG 1 chr2L:10208985-10209105 ( 73) AAAGAGCG 1 chr2L:6941902-6942022 ( 28) AAAGAGCG 1 chr3R:22124207-22124327 ( 36) AAAGAGCG 1 chr3R:8523659-8523779 ( 48) TAAGAGAA 1 chr3R:19486281-19486401 ( 54) TAAGAGAA 1 chr2L:13084518-13084638 ( 36) TAAGAGAA 1 chr3R:7658168-7658288 ( 7) TAAGAGAA 1 chr3R:17366308-17366428 ( 57) TAAGAGAA 1 chr3R:5199694-5199814 ( 26) TAAGAGAA 1 chr3L:13934970-13935090 ( 95) TAAGAGAA 1 chr3L:16935576-16935696 ( 58) TAAGAGAA 1 chr3R:17920415-17920535 ( 93) TAAGAGAA 1 chr2R:18401886-18402006 ( 14) AAAGAGCA 1 chr3L:11247920-11248040 ( 108) TAAGAGCG 1 chr2R:21361997-21362117 ( 22) TAAGAGCG 1 chr3L:2322513-2322633 ( 22) TAAGAGCG 1 chr2L:8433649-8433769 ( 62) AAAGAGAT 1 chr2R:19380372-19380492 ( 89) AAAGAGAT 1 chr3L:13667879-13667999 ( 77) TAAGAGCG 1 chr2R:11231924-11232044 ( 37) AAAGAGAT 1 chr3R:13538854-13538974 ( 54) TAAGAGCG 1 chr2R:19691960-19692080 ( 79) AAAGAGAC 1 chr2L:6792154-6792274 ( 78) TAAGAGAT 1 chr2R:10134824-10134944 ( 35) TAAGAGAT 1 chr3R:7306837-7306957 ( 54) GAAGAGAG 1 chr2R:15600406-15600526 ( 78) TAAGAGAT 1 chr2L:14038913-14039033 ( 53) TAAGAGAT 1 chr3L:7716423-7716543 ( 36) AAAGAGTG 1 chr2R:5990208-5990328 ( 44) AAAGAGTG 1 chr3L:11428516-11428636 ( 27) TAAGAGAT 1 chr3L:10187014-10187134 ( 40) AAAGAGTG 1 chr3L:5537563-5537683 ( 39) TAAGAGAT 1 chr2L:7832868-7832988 ( 4) GAAGAGAG 1 chr3R:19495316-19495436 ( 79) AAAGAGCT 1 chr2L:3648514-3648634 ( 26) TAAGAGAC 1 chr3R:30545149-30545269 ( 19) AAAGAGCT 1 chr2L:16234163-16234283 ( 73) AAAGAGCT 1 chr2L:17621335-17621455 ( 1) AAAGAGCT 1 chr3R:29829529-29829649 ( 30) AAAGAGCC 1 chr3R:13796759-13796879 ( 45) AAAGAGCC 1 chr3R:6958574-6958694 ( 32) AAAGAGCC 1 chr3L:3280093-3280213 ( 66) AAAGAGCC 1 chr2L:13036126-13036246 ( 22) GAAGAGAA 1 chr2L:14300839-14300959 ( 63) GAAGAGAA 1 chr3L:2169085-2169205 ( 108) AAAGAGTA 1 chr3R:20564081-20564201 ( 79) TAAGAGTG 1 chr3L:5902505-5902625 ( 92) TAAGAGTG 1 chr2L:245760-245880 ( 15) GAAGAGCG 1 chr3R:22124915-22125035 ( 33) GAAGAGCG 1 chrX:12202898-12203018 ( 69) TAAGAGTA 1 chr3R:19503399-19503519 ( 28) TAAGAGTA 1 chr2R:7888206-7888326 ( 90) GAAGAGCA 1 chr3R:25735687-25735807 ( 59) CAAGAGAA 1 chr2L:790759-790879 ( 92) CAAGAGAA 1 chr3R:24485137-24485257 ( 38) GAAGAGCA 1 chr2R:11930322-11930442 ( 101) AAAGAGTC 1 chr3R:4083775-4083895 ( 103) AAAGAGTC 1 chr2L:11903561-11903681 ( 99) CAAGAGCG 1 chr3L:7787937-7788057 ( 9) AAAGAGTC 1 chr3R:31168532-31168652 ( 60) AAAGAGTC 1 chr2L:7243763-7243883 ( 8) AAAGAGTC 1 chr3R:25316089-25316209 ( 27) TAAGAGTT 1 chr4:555083-555203 ( 66) CAAGAGAT 1 chr2L:16852348-16852468 ( 94) CAAGAGAT 1 chr3R:4077787-4077907 ( 74) CAAGAGAT 1 chr3R:23605623-23605743 ( 21) GAAGAGCC 1 chrX:2324020-2324140 ( 50) GAAGAGCC 1 chr3L:17238431-17238551 ( 19) GAAGAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAGAGAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.70528 E= 1.9e-033 91 -196 -113 23 184 -1336 -1336 -1336 184 -1336 -1336 -1336 -1336 -1336 212 -1336 184 -1336 -1336 -1336 -1336 -1336 212 -1336 106 31 -1336 -91 30 -85 69 -73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAGAGAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 1.9e-033 0.523810 0.057143 0.104762 0.314286 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.580952 0.276190 0.000000 0.142857 0.342857 0.123810 0.371429 0.161905 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAGAGAR MEME-3 regular expression -------------------------------------------------------------------------------- [AT]AAGAG[AC][GA] -------------------------------------------------------------------------------- Time 19.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTTTK MEME-4 width = 8 sites = 56 llr = 475 E-value = 6.8e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTTTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C :a:a::32 probability G 2::::::5 matrix T 6:a:aa73 bits 2.2 * * 2.0 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ****** (12.2 bits) 0.9 ****** 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTTTG consensus A CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTTTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8272838-8272958 75 1.58e-05 GGCGCCGGGC TCTCTTTG CTTCGTTGAG chr3L:882967-883087 12 1.58e-05 ATTCTTTCGT TCTCTTTG GCTCTCTCTT chrX:3684921-3685041 73 1.58e-05 ACTATCTGCT TCTCTTTG TATCAACATG chr2L:22148842-22148962 47 1.58e-05 AAAGAGAACT TCTCTTTG TTCAATTCGC chrX:18665865-18665985 52 1.58e-05 TCCGCGCCAT TCTCTTTG GCTCACTCTT chr2R:15390252-15390372 35 1.58e-05 TTGCACACTT TCTCTTTG ACGCGGACTC chr3R:15077362-15077482 42 1.58e-05 ACATGTGGAG TCTCTTTG ATATCCGGCT chr2L:3426026-3426146 39 1.58e-05 TCTTTCTCTT TCTCTTTG GGTTTATTGC chr2L:19918006-19918126 52 1.58e-05 CCGCAGCGGC TCTCTTTG GGTCTCTCTT chr2R:11756483-11756603 69 3.42e-05 CGAAATGTTT TCTCTTTT TTATGGCAAT chr3R:12080738-12080858 80 3.42e-05 TCTCTCTTAC TCTCTTTT CATTCAAAAA chrX:7092016-7092136 7 3.42e-05 TCTCTT TCTCTTTT TACATGTGTG chr2R:11757733-11757853 66 3.42e-05 CAGCTTGAGG TCTCTTTT TCTGTGATAC chr2L:13878099-13878219 63 3.42e-05 TCTTCGATGC TCTCTTTT GCGTCATCAT chr2L:22145636-22145756 22 3.42e-05 TTTAACAAAA TCTCTTTT TCCAGTTTAC chr3R:20564081-20564201 50 3.42e-05 CGTAGTCTTA TCTCTTTT TAGTTGCTCT chr3R:18931876-18931996 32 3.42e-05 accacacaTT TCTCTTTT GTCTCTTCCC chr3R:14580219-14580339 10 3.42e-05 AGAATGTAG TCTCTTTT AAAAATAAAC chr3L:17914109-17914229 16 6.39e-05 GCCTGTAGTA TCTCTTCG AGTTTCAAGT chr2R:15400914-15401034 69 6.39e-05 CCAGTTGCTT TCTCTTCG TTTGCCCACG chr3R:4130371-4130491 40 6.39e-05 AGTTGGACAG ACTCTTTG ACATTAACGA chr2L:5145260-5145380 16 6.39e-05 TAAGTGCTCC TCTCTTCG TTGGAAAGCC chr2L:21141872-21141992 1 6.39e-05 . TCTCTTCG GCTACTTTTG chr2L:22117805-22117925 26 6.39e-05 tctcgtgtca actctttg aatctcgaag chr3L:7189787-7189907 23 6.39e-05 TCTTCCACGC TCTCTTCG GCGAGAATTC chr3R:7753695-7753815 34 6.39e-05 CTTTGCAGAC TCTCTTCG CTGTGCGAGT chr2L:5659268-5659388 63 6.39e-05 CCAAGGCTTC TCTCTTCG GCAAGCGGTG chr2L:17621335-17621455 95 6.39e-05 TGGGAATTTT ACTCTTTG GAAACAATGT chr3R:30552812-30552932 36 6.39e-05 AACAAAAATG TCTCTTCG GACTTTTGAT chr3R:19503399-19503519 63 7.74e-05 TGTTTATTTT GCTCTTTG AAGTATTTAC chr2R:15610013-15610133 71 7.74e-05 TAAGTCCTGC GCTCTTTG GCTCTTCTCT chr2R:19380372-19380492 51 7.74e-05 AACTAAGTGG GCTCTTTG AATATTTGGA chrX:17871162-17871282 63 9.28e-05 CACCACGGCT TCTCTTTC ACGGGGGAAA chr2R:8722473-8722593 44 9.28e-05 GGCAGAGCAT TCTCTTTC ATTTTCAGAA chr3L:21994122-21994242 62 9.28e-05 ACCGCCACTT TCTCTTTC CCGGCTCTAT chr2R:14814364-14814484 59 9.28e-05 GCAGTTCAGT TCTCTTTC AATTCAGTCT chr3R:11172972-11173092 21 1.27e-04 AACAAATAGC ACTCTTTT TTCAATCTGG chrX:278068-278188 29 1.27e-04 TTCCCACCAT ACTCTTTT TTCTGTGCTG chr2L:20242902-20243022 87 1.27e-04 AATTTTGTGC ACTCTTTT GATTCTCTTT chr2L:7243763-7243883 48 1.27e-04 GAGTTCGAAT TCTCTTCT AAGCTCTCAC chr2R:9684565-9684685 21 1.41e-04 GCTACTTTAT ACTCTTCG ATTTTGGCTA chrX:20062847-20062967 53 1.41e-04 TTCGAAGTTG ACTCTTCG GAGACACCAA chr3R:16128634-16128754 25 1.41e-04 TCTTTCCATC ACTCTTCG AGCGTGCTTT chr2R:18406874-18406994 30 1.41e-04 AAATATAGTG ACTCTTCG CTGTTGACGT chr2R:16335913-16336033 93 1.57e-04 CGCCTATTGC GCTCTTTT CACCACTCGC chr3L:3747423-3747543 28 1.57e-04 GCCAAGAAAA GCTCTTTT CCTACTCAGG chr3R:9979116-9979236 52 1.57e-04 CTTGCTAGCC GCTCTTTT TGGCCTAGTT chr3R:18621332-18621452 108 1.57e-04 AAGTCAAAAC GCTCTTTT TCCAA chr2L:16231412-16231532 76 1.68e-04 GTCGTTCGCA GCTCTTCG ACATCGGCGG chr3R:13815155-13815275 113 1.97e-04 AGGCAGTTTA ACTCTTTC chr3R:30545149-30545269 64 1.97e-04 CACACCTGCA ACTCTTTC ACAGTTTGTG chr2R:14449082-14449202 57 1.97e-04 TTGTAGTGGT ACTCTTTC ATGCTCTTAA chr3L:16073253-16073373 39 1.97e-04 CGATGTGGGC ACTCTTTC GCTGCTCTTT chr2L:16520555-16520675 89 2.26e-04 TTTCACAAAG ACTCTTCT GACACGCGAA chr3R:7306837-7306957 71 2.26e-04 GAAAGAGAGA GCTCTTTC ACTGACGCTC chr3L:2400392-2400512 38 2.39e-04 TCTTTAGGTT GCTCTTCT GCCCATTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTTTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8272838-8272958 1.6e-05 74_[+4]_38 chr3L:882967-883087 1.6e-05 11_[+4]_101 chrX:3684921-3685041 1.6e-05 72_[+4]_40 chr2L:22148842-22148962 1.6e-05 46_[+4]_66 chrX:18665865-18665985 1.6e-05 51_[+4]_61 chr2R:15390252-15390372 1.6e-05 34_[+4]_78 chr3R:15077362-15077482 1.6e-05 41_[+4]_71 chr2L:3426026-3426146 1.6e-05 38_[+4]_74 chr2L:19918006-19918126 1.6e-05 51_[+4]_61 chr2R:11756483-11756603 3.4e-05 68_[+4]_44 chr3R:12080738-12080858 3.4e-05 79_[+4]_33 chrX:7092016-7092136 3.4e-05 6_[+4]_106 chr2R:11757733-11757853 3.4e-05 65_[+4]_47 chr2L:13878099-13878219 3.4e-05 62_[+4]_50 chr2L:22145636-22145756 3.4e-05 21_[+4]_91 chr3R:20564081-20564201 3.4e-05 49_[+4]_63 chr3R:18931876-18931996 3.4e-05 31_[+4]_81 chr3R:14580219-14580339 3.4e-05 9_[+4]_103 chr3L:17914109-17914229 6.4e-05 15_[+4]_97 chr2R:15400914-15401034 6.4e-05 68_[+4]_44 chr3R:4130371-4130491 6.4e-05 39_[+4]_73 chr2L:5145260-5145380 6.4e-05 15_[+4]_97 chr2L:21141872-21141992 6.4e-05 [+4]_112 chr2L:22117805-22117925 6.4e-05 25_[+4]_87 chr3L:7189787-7189907 6.4e-05 22_[+4]_90 chr3R:7753695-7753815 6.4e-05 33_[+4]_79 chr2L:5659268-5659388 6.4e-05 62_[+4]_50 chr2L:17621335-17621455 6.4e-05 94_[+4]_18 chr3R:30552812-30552932 6.4e-05 35_[+4]_77 chr3R:19503399-19503519 7.7e-05 62_[+4]_50 chr2R:15610013-15610133 7.7e-05 70_[+4]_42 chr2R:19380372-19380492 7.7e-05 50_[+4]_62 chrX:17871162-17871282 9.3e-05 62_[+4]_50 chr2R:8722473-8722593 9.3e-05 43_[+4]_69 chr3L:21994122-21994242 9.3e-05 61_[+4]_51 chr2R:14814364-14814484 9.3e-05 58_[+4]_54 chr3R:11172972-11173092 0.00013 20_[+4]_92 chrX:278068-278188 0.00013 28_[+4]_84 chr2L:20242902-20243022 0.00013 86_[+4]_26 chr2L:7243763-7243883 0.00013 47_[+4]_65 chr2R:9684565-9684685 0.00014 20_[+4]_92 chrX:20062847-20062967 0.00014 52_[+4]_60 chr3R:16128634-16128754 0.00014 24_[+4]_88 chr2R:18406874-18406994 0.00014 29_[+4]_83 chr2R:16335913-16336033 0.00016 92_[+4]_20 chr3L:3747423-3747543 0.00016 27_[+4]_85 chr3R:9979116-9979236 0.00016 51_[+4]_61 chr3R:18621332-18621452 0.00016 107_[+4]_5 chr2L:16231412-16231532 0.00017 75_[+4]_37 chr3R:13815155-13815275 0.0002 112_[+4] chr3R:30545149-30545269 0.0002 63_[+4]_49 chr2R:14449082-14449202 0.0002 56_[+4]_56 chr3L:16073253-16073373 0.0002 38_[+4]_74 chr2L:16520555-16520675 0.00023 88_[+4]_24 chr3R:7306837-7306957 0.00023 70_[+4]_42 chr3L:2400392-2400512 0.00024 37_[+4]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTTTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTTTK width=8 seqs=56 chr2R:8272838-8272958 ( 75) TCTCTTTG 1 chr3L:882967-883087 ( 12) TCTCTTTG 1 chrX:3684921-3685041 ( 73) TCTCTTTG 1 chr2L:22148842-22148962 ( 47) TCTCTTTG 1 chrX:18665865-18665985 ( 52) TCTCTTTG 1 chr2R:15390252-15390372 ( 35) TCTCTTTG 1 chr3R:15077362-15077482 ( 42) TCTCTTTG 1 chr2L:3426026-3426146 ( 39) TCTCTTTG 1 chr2L:19918006-19918126 ( 52) TCTCTTTG 1 chr2R:11756483-11756603 ( 69) TCTCTTTT 1 chr3R:12080738-12080858 ( 80) TCTCTTTT 1 chrX:7092016-7092136 ( 7) TCTCTTTT 1 chr2R:11757733-11757853 ( 66) TCTCTTTT 1 chr2L:13878099-13878219 ( 63) TCTCTTTT 1 chr2L:22145636-22145756 ( 22) TCTCTTTT 1 chr3R:20564081-20564201 ( 50) TCTCTTTT 1 chr3R:18931876-18931996 ( 32) TCTCTTTT 1 chr3R:14580219-14580339 ( 10) TCTCTTTT 1 chr3L:17914109-17914229 ( 16) TCTCTTCG 1 chr2R:15400914-15401034 ( 69) TCTCTTCG 1 chr3R:4130371-4130491 ( 40) ACTCTTTG 1 chr2L:5145260-5145380 ( 16) TCTCTTCG 1 chr2L:21141872-21141992 ( 1) TCTCTTCG 1 chr2L:22117805-22117925 ( 26) ACTCTTTG 1 chr3L:7189787-7189907 ( 23) TCTCTTCG 1 chr3R:7753695-7753815 ( 34) TCTCTTCG 1 chr2L:5659268-5659388 ( 63) TCTCTTCG 1 chr2L:17621335-17621455 ( 95) ACTCTTTG 1 chr3R:30552812-30552932 ( 36) TCTCTTCG 1 chr3R:19503399-19503519 ( 63) GCTCTTTG 1 chr2R:15610013-15610133 ( 71) GCTCTTTG 1 chr2R:19380372-19380492 ( 51) GCTCTTTG 1 chrX:17871162-17871282 ( 63) TCTCTTTC 1 chr2R:8722473-8722593 ( 44) TCTCTTTC 1 chr3L:21994122-21994242 ( 62) TCTCTTTC 1 chr2R:14814364-14814484 ( 59) TCTCTTTC 1 chr3R:11172972-11173092 ( 21) ACTCTTTT 1 chrX:278068-278188 ( 29) ACTCTTTT 1 chr2L:20242902-20243022 ( 87) ACTCTTTT 1 chr2L:7243763-7243883 ( 48) TCTCTTCT 1 chr2R:9684565-9684685 ( 21) ACTCTTCG 1 chrX:20062847-20062967 ( 53) ACTCTTCG 1 chr3R:16128634-16128754 ( 25) ACTCTTCG 1 chr2R:18406874-18406994 ( 30) ACTCTTCG 1 chr2R:16335913-16336033 ( 93) GCTCTTTT 1 chr3L:3747423-3747543 ( 28) GCTCTTTT 1 chr3R:9979116-9979236 ( 52) GCTCTTTT 1 chr3R:18621332-18621452 ( 108) GCTCTTTT 1 chr2L:16231412-16231532 ( 76) GCTCTTCG 1 chr3R:13815155-13815275 ( 113) ACTCTTTC 1 chr3R:30545149-30545269 ( 64) ACTCTTTC 1 chr2R:14449082-14449202 ( 57) ACTCTTTC 1 chr3L:16073253-16073373 ( 39) ACTCTTTC 1 chr2L:16520555-16520675 ( 89) ACTCTTCT 1 chr3R:7306837-7306957 ( 71) GCTCTTTC 1 chr3L:2400392-2400512 ( 38) GCTCTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTTTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 6.8e-018 -6 -1245 -36 104 -1245 217 -1245 -1245 -1245 -1245 -1245 190 -1245 217 -1245 -1245 -1245 -1245 -1245 190 -1245 -1245 -1245 190 -1245 36 -1245 141 -1245 -47 112 34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTTTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 6.8e-018 0.267857 0.000000 0.178571 0.553571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.160714 0.500000 0.339286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTTTK MEME-4 regular expression -------------------------------------------------------------------------------- [TA]CTCTT[TC][GT] -------------------------------------------------------------------------------- Time 24.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGCCAM MEME-5 width = 8 sites = 16 llr = 160 E-value = 7.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGCCAM MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::75 pos.-specific C ::::aa:5 probability G ::aa::3: matrix T aa:::::: bits 2.2 **** 2.0 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCCAA consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:180145-180265 52 1.18e-05 GCTGGGCGCA TTGGCCAC TGTTTTCGTT chr2L:14180791-14180911 94 1.18e-05 GGGTTTTGAG TTGGCCAC ATGAGGAAAT chr3R:31499047-31499167 89 1.18e-05 GTTTTTCTTT TTGGCCAC AAGAGAGTTA chr3L:3280093-3280213 40 1.18e-05 AGAGCCGCTT TTGGCCAC CTCGGCTGCC chrX:18665865-18665985 1 1.18e-05 . TTGGCCAC TTTGTGGCAC chr3L:3747423-3747543 15 2.65e-05 CCATTTTCTC TTGGCCAA GAAAAGCTCT chr3R:14064717-14064837 20 2.65e-05 TCTATATTTT TTGGCCAA GATAAATTAT chr3R:13789772-13789892 9 2.65e-05 TCCGCATT TTGGCCAA CAGAGAGCGA chr3L:3746716-3746836 102 2.65e-05 GCTCTCTTAG TTGGCCAA AAAAAAGAGC chr3L:7787937-7788057 47 2.65e-05 TTTTTTCGCC TTGGCCAA AAGAGGTCAC chr3L:7743117-7743237 21 2.65e-05 GTTTTTTTTT TTGGCCAA AAAGCCCTAA chr2R:8722473-8722593 7 3.62e-05 CTTTTA TTGGCCGC AGATTCGCGC chr2R:18407828-18407948 95 3.62e-05 CAAATTGACC TTGGCCGC CCTTGGCATT chr2R:12044990-12045110 43 3.62e-05 TTTGTTGTTG TTGGCCGC GTGCTGCGTT chr2L:6792154-6792274 108 4.83e-05 CAGATACTTC TTGGCCGA CATAA chr2L:7887245-7887365 27 4.83e-05 CTGAAAATTC TTGGCCGA CACCAAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:180145-180265 1.2e-05 51_[+5]_61 chr2L:14180791-14180911 1.2e-05 93_[+5]_19 chr3R:31499047-31499167 1.2e-05 88_[+5]_24 chr3L:3280093-3280213 1.2e-05 39_[+5]_73 chrX:18665865-18665985 1.2e-05 [+5]_112 chr3L:3747423-3747543 2.6e-05 14_[+5]_98 chr3R:14064717-14064837 2.6e-05 19_[+5]_93 chr3R:13789772-13789892 2.6e-05 8_[+5]_104 chr3L:3746716-3746836 2.6e-05 101_[+5]_11 chr3L:7787937-7788057 2.6e-05 46_[+5]_66 chr3L:7743117-7743237 2.6e-05 20_[+5]_92 chr2R:8722473-8722593 3.6e-05 6_[+5]_106 chr2R:18407828-18407948 3.6e-05 94_[+5]_18 chr2R:12044990-12045110 3.6e-05 42_[+5]_70 chr2L:6792154-6792274 4.8e-05 107_[+5]_5 chr2L:7887245-7887365 4.8e-05 26_[+5]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGCCAM width=8 seqs=16 chr3L:180145-180265 ( 52) TTGGCCAC 1 chr2L:14180791-14180911 ( 94) TTGGCCAC 1 chr3R:31499047-31499167 ( 89) TTGGCCAC 1 chr3L:3280093-3280213 ( 40) TTGGCCAC 1 chrX:18665865-18665985 ( 1) TTGGCCAC 1 chr3L:3747423-3747543 ( 15) TTGGCCAA 1 chr3R:14064717-14064837 ( 20) TTGGCCAA 1 chr3R:13789772-13789892 ( 9) TTGGCCAA 1 chr3L:3746716-3746836 ( 102) TTGGCCAA 1 chr3L:7787937-7788057 ( 47) TTGGCCAA 1 chr3L:7743117-7743237 ( 21) TTGGCCAA 1 chr2R:8722473-8722593 ( 7) TTGGCCGC 1 chr2R:18407828-18407948 ( 95) TTGGCCGC 1 chr2R:12044990-12045110 ( 43) TTGGCCGC 1 chr2L:6792154-6792274 ( 108) TTGGCCGA 1 chr2L:7887245-7887365 ( 27) TTGGCCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 7.9e+001 -1064 -1064 -1064 190 -1064 -1064 -1064 190 -1064 -1064 212 -1064 -1064 -1064 212 -1064 -1064 217 -1064 -1064 -1064 217 -1064 -1064 130 -1064 44 -1064 84 117 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.9e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.687500 0.000000 0.312500 0.000000 0.500000 0.500000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCAM MEME-5 regular expression -------------------------------------------------------------------------------- TTGGCC[AG][AC] -------------------------------------------------------------------------------- Time 30.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16073253-16073373 4.01e-02 120 chr4:893640-893760 8.87e-04 81_[+2(8.26e-05)]_31 chr2L:20829732-20829852 7.70e-01 120 chr3R:30552812-30552932 1.97e-03 35_[+4(6.39e-05)]_34_[+4(3.42e-05)]_\ 35 chr3L:22960454-22960574 9.68e-05 50_[+4(7.74e-05)]_62 chr2L:17621335-17621455 3.98e-05 52_[+3(4.55e-05)]_18_[+4(7.74e-05)]_\ 8_[+4(6.39e-05)]_18 chr3R:14065826-14065946 1.16e-04 49_[+2(1.60e-05)]_24_[+2(1.60e-05)]_\ 31 chr3L:4073901-4074021 1.45e-03 107_[+2(1.60e-05)]_5 chr2R:14814364-14814484 8.57e-03 57_[+2(6.89e-05)]_10_[+2(5.05e-05)]_\ 12_[+2(5.05e-05)]_17 chr3L:19482133-19482253 3.63e-06 42_[+4(1.58e-05)]_42_[+3(6.53e-05)]_\ 20 chr3R:14580219-14580339 7.86e-05 9_[+4(3.42e-05)]_44_[+2(1.60e-05)]_\ 4_[+4(7.74e-05)]_39 chr3L:22788069-22788189 2.49e-02 57_[+1(6.20e-05)]_12_[+1(6.20e-05)]_\ 6_[+3(4.55e-05)]_21 chr3R:13538854-13538974 7.59e-03 120 chr2L:9446784-9446904 5.56e-04 97_[+1(2.06e-05)]_15 chr2R:13620441-13620561 1.14e-02 120 chr2L:16794125-16794245 2.54e-02 53_[+2(6.89e-05)]_59 chr3R:4077787-4077907 2.51e-03 27_[+2(1.60e-05)]_85 chr2R:11231924-11232044 3.03e-02 75_[+1(6.20e-05)]_37 chrX:13395093-13395213 7.02e-04 71_[+2(1.60e-05)]_41 chr2L:13113752-13113872 3.42e-05 1_[+3(2.06e-05)]_52_[+2(5.05e-05)]_\ 51 chr3R:12367619-12367739 2.90e-03 42_[+3(4.55e-05)]_14_[+3(4.55e-05)]_\ 13_[+1(3.70e-05)]_27 chr2L:5659268-5659388 1.87e-03 43_[+2(1.60e-05)]_11_[+4(6.39e-05)]_\ 25_[+4(6.39e-05)]_17 chr3R:22698372-22698492 2.66e-01 120 chr2L:16852348-16852468 3.05e-04 37_[+2(6.89e-05)]_75 chr3L:2169085-2169205 4.85e-04 86_[+3(4.55e-05)]_26 chr2L:7832868-7832988 9.38e-05 4_[+1(3.70e-05)]_36_[+1(2.06e-05)]_\ 64 chr2L:7243763-7243883 3.00e-04 82_[+4(1.58e-05)]_30 chr2L:19918006-19918126 1.90e-03 51_[+4(1.58e-05)]_3_[+2(1.60e-05)]_\ 50 chr2L:11879077-11879197 3.91e-06 22_[+3(2.06e-05)]_37_[+2(1.60e-05)]_\ 45 chr3L:3749618-3749738 4.23e-03 58_[+2(1.60e-05)]_13_[+2(1.60e-05)]_\ 33 chr3L:13667879-13667999 4.08e-03 120 chr2L:3426026-3426146 7.61e-03 25_[+2(3.13e-05)]_5_[+4(1.58e-05)]_\ 74 chr3R:15077362-15077482 1.03e-03 41_[+4(1.58e-05)]_8_[+2(1.60e-05)]_\ 46_[+4(6.39e-05)]_1 chr3R:18931876-18931996 8.62e-03 31_[+4(3.42e-05)]_49_[+2(6.89e-05)]_\ 8_[+2(3.13e-05)]_8 chr3R:16876790-16876910 2.23e-06 86_[+3(2.06e-05)]_9_[+2(3.13e-05)]_\ 9 chr2R:7545066-7545186 2.02e-03 13_[+3(8.17e-05)]_99 chr3L:22034848-22034968 1.18e-03 5_[+1(3.70e-05)]_107 chr3R:7753695-7753815 2.17e-02 2_[+2(6.89e-05)]_23_[+4(6.39e-05)]_\ 79 chr3L:21994122-21994242 1.98e-02 60_[+2(6.89e-05)]_11_[+2(5.05e-05)]_\ 33 chr2R:15390252-15390372 2.15e-05 34_[+4(1.58e-05)]_7_[+2(1.60e-05)]_\ 63 chr3R:27075748-27075868 3.30e-03 120 chr2R:18405991-18406111 1.48e-02 120 chr3L:17211698-17211818 6.07e-03 76_[+1(3.70e-05)]_4_[+1(3.70e-05)]_\ 24 chr3L:5537563-5537683 1.17e-02 68_[+1(6.20e-05)]_44 chr3L:10187014-10187134 9.72e-06 14_[+3(4.55e-05)]_98 chr2R:8407898-8408018 3.53e-03 61_[+3(6.53e-05)]_18_[+3(4.55e-05)]_\ 25 chr3R:13554192-13554312 1.85e-04 60_[+4(1.58e-05)]_52 chr3R:17920415-17920535 6.33e-03 28_[+3(2.06e-05)]_57_[+1(6.20e-05)]_\ 19 chr2L:8346424-8346544 5.50e-03 104_[+2(1.60e-05)]_8 chr2R:12044990-12045110 1.23e-01 42_[+5(3.62e-05)]_70 chr2L:19917109-19917229 2.27e-04 13_[+3(8.17e-05)]_22_[+2(5.05e-05)]_\ 69 chrX:2324020-2324140 4.62e-04 120 chr3L:7189787-7189907 7.30e-03 22_[+4(6.39e-05)]_90 chrX:7695742-7695862 4.89e-04 10_[+1(8.19e-05)]_102 chr3L:16935576-16935696 2.44e-03 58_[+1(8.19e-05)]_14_[+1(2.06e-05)]_\ 32 chr2R:19380372-19380492 2.63e-04 50_[+4(7.74e-05)]_62 chr2R:18406874-18406994 7.63e-03 [+2(3.13e-05)]_112 chr2L:11904308-11904428 9.72e-02 120 chr2L:21618057-21618177 4.46e-03 62_[+3(2.06e-05)]_30_[+3(4.55e-05)]_\ 12 chr3L:5902505-5902625 8.41e-04 120 chr2R:13926903-13927023 7.50e-01 120 chr3R:22124207-22124327 2.08e-02 35_[+3(8.17e-05)]_77 chr3R:22124915-22125035 3.52e-02 44_[+1(6.20e-05)]_68 chrX:18665865-18665985 9.26e-05 [+5(1.18e-05)]_43_[+4(1.58e-05)]_4_\ [+4(6.39e-05)]_9_[+2(6.89e-05)]_32 chr3L:7743117-7743237 1.90e-04 20_[+5(2.65e-05)]_44_[+3(8.17e-05)]_\ 40 chr2L:3730306-3730426 1.88e-04 51_[+1(2.06e-05)]_61 chr3L:12788601-12788721 5.80e-03 31_[+3(4.55e-05)]_41_[+1(2.06e-05)]_\ 32 chr2R:8444194-8444314 5.85e-04 120 chr2R:11116554-11116674 3.69e-03 98_[+4(6.39e-05)]_14 chr3R:18621332-18621452 3.29e-03 85_[+4(3.42e-05)]_27 chr3L:16452074-16452194 1.52e-06 73_[+3(4.55e-05)]_13_[+4(1.58e-05)]_\ 18 chr2L:6941902-6942022 1.63e-04 27_[+3(8.17e-05)]_7_[+1(6.20e-05)]_\ 4_[+1(6.20e-05)]_58 chr3L:11428516-11428636 3.27e-04 88_[+3(2.06e-05)]_24 chr3R:24485137-24485257 1.69e-03 89_[+3(2.06e-05)]_23 chr3L:3280093-3280213 1.02e-06 26_[+1(3.70e-05)]_5_[+5(1.18e-05)]_\ 52_[+2(1.60e-05)]_13 chr2L:10208985-10209105 1.94e-03 72_[+3(8.17e-05)]_5_[+3(4.55e-05)]_\ 27 chr2L:15332709-15332829 2.26e-05 7_[+1(6.20e-05)]_66_[+3(4.55e-05)]_\ 31 chr3R:31168532-31168652 7.42e-05 80_[+1(2.06e-05)]_32 chr2R:11107599-11107719 8.72e-06 34_[+1(3.70e-05)]_6_[+2(1.60e-05)]_\ 64 chr2R:15610013-15610133 2.13e-03 70_[+4(7.74e-05)]_5_[+4(3.42e-05)]_\ 29 chr2L:22117805-22117925 7.86e-05 25_[+4(6.39e-05)]_51_[+2(5.05e-05)]_\ 28 chr3L:13934970-13935090 3.48e-04 62_[+3(2.06e-05)]_50 chr3R:31499047-31499167 3.79e-07 7_[+3(8.17e-05)]_10_[+1(3.70e-05)]_\ 4_[+3(8.17e-05)]_43_[+5(1.18e-05)]_24 chr2L:20824530-20824650 7.71e-01 120 chr2R:12566145-12566265 8.03e-01 120 chr2L:16234163-16234283 1.92e-02 80_[+3(8.17e-05)]_32 chr3L:7787937-7788057 2.78e-03 46_[+5(2.65e-05)]_66 chrX:7695942-7696062 1.33e-02 40_[+1(8.19e-05)]_14_[+3(4.55e-05)]_\ 13_[+3(2.06e-05)]_29 chr3R:6958574-6958694 5.08e-02 120 chr2L:7855309-7855429 2.39e-06 36_[+4(1.58e-05)]_18_[+3(8.17e-05)]_\ 50 chr3L:3746716-3746836 2.70e-06 92_[+2(1.60e-05)]_1_[+5(2.65e-05)]_\ 11 chrX:10333506-10333626 4.67e-05 23_[+5(7.45e-05)]_2_[+4(3.42e-05)]_\ 79 chr2R:14449082-14449202 9.15e-04 9_[+2(3.13e-05)]_103 chr2L:11903561-11903681 2.55e-02 120 chr3R:5199694-5199814 4.00e-03 54_[+3(4.55e-05)]_58 chr2R:5990208-5990328 4.03e-03 27_[+3(4.55e-05)]_85 chr3L:22998329-22998449 2.11e-02 120 chr3R:11483470-11483590 6.79e-04 48_[+3(8.17e-05)]_22_[+1(3.70e-05)]_\ 34 chr2L:14300839-14300959 4.45e-02 120 chr3L:7716423-7716543 1.64e-03 47_[+3(4.55e-05)]_65 chr3L:15494979-15495099 1.43e-02 75_[+1(3.70e-05)]_2_[+3(4.55e-05)]_\ 12_[+1(6.20e-05)]_7 chr2L:8433649-8433769 3.29e-02 46_[+1(3.70e-05)]_66 chr2L:14180791-14180911 8.81e-05 33_[+3(4.55e-05)]_3_[+3(8.17e-05)]_\ 14_[+3(4.55e-05)]_19_[+5(1.18e-05)]_19 chr3R:20564081-20564201 7.48e-04 49_[+4(3.42e-05)]_63 chr2R:16579535-16579655 4.61e-01 120 chr3R:17366308-17366428 2.18e-02 120 chr3R:19503399-19503519 6.93e-04 44_[+2(3.13e-05)]_10_[+4(7.74e-05)]_\ 50 chrX:12389258-12389378 7.33e-03 29_[+3(8.17e-05)]_83 chr3L:2400392-2400512 3.31e-02 16_[+2(5.05e-05)]_96 chr2L:20242902-20243022 1.26e-05 62_[+3(2.06e-05)]_26_[+2(6.89e-05)]_\ 16 chr2R:10918379-10918499 2.72e-02 6_[+2(1.60e-05)]_25_[+2(5.05e-05)]_\ 73 chr2L:13035922-13036042 8.58e-03 11_[+2(3.13e-05)]_101 chr2L:7887245-7887365 2.14e-01 26_[+5(4.83e-05)]_86 chr3R:29215810-29215930 7.18e-03 68_[+3(2.06e-05)]_2_[+3(2.06e-05)]_\ 34 chr3R:4083775-4083895 1.71e-02 120 chr3R:9979116-9979236 1.17e-06 26_[+4(3.42e-05)]_57_[+1(3.70e-05)]_\ 21 chr3R:13402034-13402154 3.05e-02 110_[+1(6.20e-05)]_2 chrX:5418642-5418762 1.50e-04 44_[+3(2.06e-05)]_68 chr2R:14882068-14882188 9.86e-01 120 chr2L:18395398-18395518 1.33e-04 8_[+3(4.55e-05)]_29_[+2(5.05e-05)]_\ 13_[+3(6.53e-05)]_46 chr2R:7544329-7544449 1.39e-01 120 chr2L:790759-790879 5.49e-04 80_[+1(2.06e-05)]_32 chr3L:17238431-17238551 1.45e-04 57_[+1(3.70e-05)]_4_[+2(1.60e-05)]_\ 43 chr3R:13789772-13789892 4.49e-04 8_[+5(2.65e-05)]_104 chr2R:11930322-11930442 7.26e-04 24_[+1(6.20e-05)]_88 chrX:12202898-12203018 7.08e-02 108_[+1(8.19e-05)]_4 chr3R:11694794-11694914 2.88e-02 34_[+3(4.55e-05)]_78 chr2R:18407828-18407948 1.62e-01 94_[+5(3.62e-05)]_18 chr2L:16234908-16235028 6.74e-03 20_[+3(4.55e-05)]_24_[+3(2.06e-05)]_\ 5_[+3(8.17e-05)]_47 chr3L:1275812-1275932 2.71e-02 120 chrX:7697394-7697514 1.53e-01 120 chr2R:22647720-22647840 6.41e-02 97_[+1(6.20e-05)]_15 chr2L:14038913-14039033 1.28e-02 107_[+1(8.19e-05)]_5 chr2L:4995523-4995643 4.41e-03 51_[+3(2.06e-05)]_26_[+3(8.17e-05)]_\ 27 chr3R:7658168-7658288 3.02e-02 24_[+1(6.20e-05)]_88 chr3R:16128634-16128754 2.80e-02 120 chr3R:27223167-27223287 3.57e-03 25_[+3(6.53e-05)]_40_[+1(6.20e-05)]_\ 30_[+3(2.06e-05)]_1 chr4:555083-555203 3.25e-02 78_[+3(6.53e-05)]_34 chr3R:11980347-11980467 3.16e-01 120 chr3R:16502693-16502813 4.15e-02 120 chr2L:22145636-22145756 1.04e-05 21_[+4(3.42e-05)]_72_[+1(3.70e-05)]_\ 11 chr3R:20484606-20484726 1.62e-04 89_[+1(2.06e-05)]_15_[+3(2.06e-05)] chr2L:7608186-7608306 1.33e-02 21_[+1(2.06e-05)]_91 chr3L:4062076-4062196 1.12e-04 61_[+2(1.60e-05)]_4_[+3(8.17e-05)]_\ 39 chr2L:2279527-2279647 1.16e-02 74_[+3(2.06e-05)]_38 chr3R:18481865-18481985 3.46e-05 60_[+1(6.20e-05)]_11_[+2(5.05e-05)]_\ 10_[+3(4.55e-05)]_15 chr2L:21141872-21141992 3.60e-03 [+4(6.39e-05)]_56_[+2(3.13e-05)]_48 chr2L:13878099-13878219 4.68e-04 50_[+4(6.39e-05)]_3_[+2(3.13e-05)]_\ 43_[+2(1.60e-05)] chr2R:11757733-11757853 6.13e-03 24_[+2(5.05e-05)]_5_[+4(1.58e-05)]_\ 20_[+4(3.42e-05)]_47 chr3L:21319450-21319570 5.18e-03 94_[+3(4.55e-05)]_8_[+1(2.06e-05)]_\ 2 chrX:278068-278188 1.32e-03 8_[+2(1.60e-05)]_104 chr2R:8722473-8722593 3.09e-06 6_[+5(3.62e-05)]_9_[+2(1.60e-05)]_\ 11_[+2(6.89e-05)]_70 chr3R:16933464-16933584 3.12e-02 60_[+3(8.17e-05)]_52 chr3L:17549332-17549452 6.30e-02 120 chrX:20083890-20084010 1.47e-05 33_[+3(8.17e-05)]_5_[+1(2.06e-05)]_\ 66 chrX:12085827-12085947 2.41e-06 39_[+1(3.70e-05)]_25_[+3(2.06e-05)]_\ 9_[+1(2.06e-05)]_6_[+2(1.60e-05)]_9 chr2R:10383606-10383726 7.49e-03 108_[+1(6.20e-05)]_4 chr3R:24895010-24895130 2.11e-03 120 chr3R:23605623-23605743 7.20e-03 120 chrX:20062847-20062967 8.24e-02 120 chr2R:18401886-18402006 1.13e-05 84_[+2(1.60e-05)]_4_[+1(3.70e-05)]_\ 16 chr2L:18156019-18156139 8.01e-01 120 chr3R:17505942-17506062 4.03e-06 21_[+4(1.58e-05)]_33_[+3(4.55e-05)]_\ 20_[+3(4.55e-05)]_3_[+3(4.55e-05)]_11 chr2L:5030644-5030764 8.55e-03 11_[+1(3.70e-05)]_101 chr2L:5145260-5145380 5.70e-07 15_[+4(6.39e-05)]_12_[+2(1.60e-05)]_\ 15_[+1(2.06e-05)]_54 chrX:5744477-5744597 4.07e-02 55_[+2(3.13e-05)]_57 chr3L:2170878-2170998 5.66e-01 120 chr3R:31119897-31120017 3.33e-03 32_[+3(6.53e-05)]_5_[+1(3.70e-05)]_\ 1_[+3(8.17e-05)]_58 chr3R:14064717-14064837 5.65e-02 19_[+5(2.65e-05)]_93 chr2L:22148842-22148962 3.12e-06 36_[+3(4.55e-05)]_2_[+4(1.58e-05)]_\ 48_[+2(5.05e-05)]_10 chr3R:25735687-25735807 2.28e-03 24_[+1(6.20e-05)]_88 chr3L:2322513-2322633 9.37e-05 2_[+1(3.70e-05)]_110 chr2R:10225302-10225422 5.05e-03 35_[+3(4.55e-05)]_3_[+1(2.06e-05)]_\ 66 chr3L:3747423-3747543 1.35e-04 14_[+5(2.65e-05)]_30_[+2(6.89e-05)]_\ 60 chr2R:15600406-15600526 6.45e-04 93_[+2(8.26e-05)]_19 chr2L:7887447-7887567 5.13e-04 120 chr3R:25331155-25331275 2.94e-02 120 chr2L:3757116-3757236 3.15e-02 66_[+2(1.60e-05)]_46 chr3R:4130371-4130491 9.48e-02 39_[+4(6.39e-05)]_73 chr2L:245760-245880 9.99e-02 120 chr2R:15485183-15485303 5.18e-01 120 chr3R:6593321-6593441 4.08e-01 120 chr2R:23683332-23683452 7.21e-01 120 chr2R:18407080-18407200 9.57e-01 120 chr2R:9684565-9684685 8.52e-03 120 chr3L:4625543-4625663 2.62e-03 80_[+3(4.55e-05)]_7_[+3(4.55e-05)]_\ 17 chr2L:4441473-4441593 2.39e-01 120 chrX:10801228-10801348 7.20e-03 61_[+3(4.55e-05)]_13_[+1(2.06e-05)]_\ 30 chr3L:13840873-13840993 2.94e-03 97_[+2(1.60e-05)]_15 chr3R:7306837-7306957 1.28e-05 54_[+1(2.06e-05)]_[+1(2.06e-05)]_50 chr3R:30545149-30545269 2.68e-04 34_[+1(6.20e-05)]_78 chrX:7092016-7092136 4.93e-03 6_[+4(3.42e-05)]_28_[+2(1.60e-05)]_\ 70 chr2R:16335913-16336033 2.10e-05 39_[+3(8.17e-05)]_[+3(4.55e-05)]_7_\ [+2(6.89e-05)]_50 chr2L:13036126-13036246 3.40e-07 50_[+1(2.06e-05)]_6_[+4(1.58e-05)]_\ 48 chrX:17871162-17871282 4.08e-03 39_[+2(3.13e-05)]_14_[+2(6.89e-05)]_\ 51 chr2R:21361997-21362117 2.43e-02 36_[+1(6.20e-05)]_76 chr3R:7310721-7310841 1.25e-04 17_[+2(8.26e-05)]_32_[+1(2.06e-05)]_\ 11_[+3(2.06e-05)]_36 chr3R:13815155-13815275 3.52e-04 36_[+1(3.70e-05)]_76 chrX:14082882-14083002 5.37e-03 76_[+3(4.55e-05)]_11_[+1(2.06e-05)]_\ 17 chrX:5282169-5282289 2.85e-02 120 chr2R:7888206-7888326 1.10e-03 37_[+1(8.19e-05)]_75 chr2L:16231412-16231532 2.03e-04 20_[+3(2.06e-05)]_92 chr2R:17794282-17794402 2.06e-02 89_[+3(4.55e-05)]_23 chr2L:16520555-16520675 2.12e-04 104_[+3(2.06e-05)]_8 chr3R:5716808-5716928 2.98e-02 73_[+2(5.05e-05)]_23_[+2(1.60e-05)]_\ 8 chr2L:14054474-14054594 5.00e-01 120 chr2R:18404476-18404596 6.43e-03 41_[+2(5.05e-05)]_19_[+2(1.60e-05)]_\ 44 chr2R:8131808-8131928 2.97e-02 54_[+2(8.26e-05)]_58 chr2R:11107817-11107937 6.14e-01 120 chr3R:11172972-11173092 4.52e-03 38_[+2(5.05e-05)]_2_[+2(5.05e-05)]_\ 64 chr3L:15494021-15494141 9.26e-04 49_[+3(4.55e-05)]_6_[+1(6.20e-05)]_\ 49 chr3R:16899107-16899227 6.82e-04 [+3(8.17e-05)]_32_[+3(2.06e-05)]_51_\ [+1(2.06e-05)]_13 chr3R:12080738-12080858 1.29e-05 55_[+1(6.20e-05)]_7_[+2(1.60e-05)]_\ [+2(3.13e-05)]_34 chr3L:2107561-2107681 5.11e-03 [+1(8.19e-05)]_38_[+1(6.20e-05)]_66 chr2R:15400914-15401034 4.30e-05 44_[+4(7.74e-05)]_16_[+4(6.39e-05)]_\ 44 chr2L:6742101-6742221 8.54e-03 62_[+3(4.55e-05)]_26_[+3(6.53e-05)]_\ 16 chr3L:180145-180265 2.57e-03 51_[+5(1.18e-05)]_61 chr2R:10134824-10134944 1.62e-02 120 chr3R:5670170-5670290 2.70e-02 108_[+3(2.06e-05)]_4 chr2L:19809790-19809910 1.22e-03 10_[+2(1.60e-05)]_102 chr2R:11756483-11756603 7.93e-06 30_[+2(3.13e-05)]_14_[+3(8.17e-05)]_\ 8_[+4(3.42e-05)]_44 chr3R:13796759-13796879 1.46e-05 3_[+3(6.53e-05)]_109 chr2L:13084518-13084638 5.06e-03 58_[+1(2.06e-05)]_54 chr3L:11247920-11248040 6.21e-03 97_[+3(4.55e-05)]_15 chr2L:3648514-3648634 1.98e-03 56_[+2(5.05e-05)]_56 chr3R:6460765-6460885 2.04e-03 120 chr3L:17914109-17914229 9.53e-03 15_[+4(6.39e-05)]_97 chr3L:9501461-9501581 6.69e-02 85_[+2(5.05e-05)]_27 chr3R:30387480-30387600 1.40e-01 120 chrX:3684921-3685041 5.70e-03 40_[+2(3.13e-05)]_24_[+4(1.58e-05)]_\ 40 chr2R:19691960-19692080 3.52e-04 66_[+3(2.06e-05)]_46 chrX:4840699-4840819 8.21e-04 120 chr3R:25783205-25783325 3.08e-04 21_[+4(1.58e-05)]_91 chrX:19788218-19788338 6.71e-02 120 chr3R:17506930-17507050 3.10e-02 120 chr3R:19486281-19486401 3.01e-03 37_[+1(2.06e-05)]_9_[+1(6.20e-05)]_\ 58 chr2R:11662803-11662923 5.87e-03 51_[+2(3.13e-05)]_6_[+2(5.05e-05)]_\ 47 chr3R:25316089-25316209 6.15e-02 120 chr3R:29829529-29829649 5.93e-04 87_[+2(5.05e-05)]_25 chr3R:4236535-4236655 8.27e-04 2_[+2(5.05e-05)]_110 chr3L:882967-883087 1.07e-03 11_[+4(1.58e-05)]_3_[+2(3.13e-05)]_\ 90 chr3L:10186123-10186243 5.68e-01 120 chr3R:8523659-8523779 1.54e-02 35_[+1(6.20e-05)]_77 chr3R:13208584-13208704 2.25e-01 120 chr2L:6792154-6792274 1.79e-04 107_[+5(4.83e-05)]_5 chr3R:6474534-6474654 3.91e-05 61_[+1(2.06e-05)]_36_[+2(1.60e-05)]_\ 7 chr2R:8272838-8272958 3.52e-03 56_[+2(1.60e-05)]_10_[+4(1.58e-05)]_\ 38 chr3R:7993652-7993772 9.96e-01 120 chr3R:25759503-25759623 8.17e-03 3_[+4(3.42e-05)]_109 chr3R:19495316-19495436 2.78e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************