******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG31627.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:10359543-10359663 1.0000 120 chr3L:6471973-6472093 1.0000 120 chr3L:8763949-8764069 1.0000 120 chr3R:16985686-16985806 1.0000 120 chr2R:16685730-16685850 1.0000 120 chr2L:7992074-7992194 1.0000 120 chr2L:11399615-11399735 1.0000 120 chr3R:22628059-22628179 1.0000 120 chr3R:31424563-31424683 1.0000 120 chr3L:3074495-3074615 1.0000 120 chr3L:3246903-3247023 1.0000 120 chr3R:26192421-26192541 1.0000 120 chr2R:18610467-18610587 1.0000 120 chr2L:7573341-7573461 1.0000 120 chr3L:8368810-8368930 1.0000 120 chr2L:9438364-9438484 1.0000 120 chr3R:13793465-13793585 1.0000 120 chr3R:21827591-21827711 1.0000 120 chr3L:21738852-21738972 1.0000 120 chr3R:9913599-9913719 1.0000 120 chrX:13541344-13541464 1.0000 120 chrX:1897528-1897648 1.0000 120 chr3R:8116063-8116183 1.0000 120 chr3R:31308971-31309091 1.0000 120 chr3L:761838-761958 1.0000 120 chr3R:31956430-31956550 1.0000 120 chrX:17172261-17172381 1.0000 120 chrX:9892971-9893091 1.0000 120 chrX:14750600-14750720 1.0000 120 chr2R:10237796-10237916 1.0000 120 chr2L:650996-651116 1.0000 120 chr3L:2795676-2795796 1.0000 120 chr2L:11220942-11221062 1.0000 120 chr2L:3554058-3554178 1.0000 120 chr3L:18406067-18406187 1.0000 120 chrX:17545698-17545818 1.0000 120 chr3L:3785857-3785977 1.0000 120 chr3L:11365856-11365976 1.0000 120 chr2R:22545874-22545994 1.0000 120 chr3R:31505290-31505410 1.0000 120 chrX:5026808-5026928 1.0000 120 chr3L:6220307-6220427 1.0000 120 chr2R:6144360-6144480 1.0000 120 chr3R:30281376-30281496 1.0000 120 chr3R:10579668-10579788 1.0000 120 chrX:19164869-19164989 1.0000 120 chr2L:634301-634421 1.0000 120 chrX:17760654-17760774 1.0000 120 chr2R:23237481-23237601 1.0000 120 chr3L:1458147-1458267 1.0000 120 chr2R:8659673-8659793 1.0000 120 chr2R:20136861-20136981 1.0000 120 chr3R:29763924-29764044 1.0000 120 chr3L:13410200-13410320 1.0000 120 chr2L:15328136-15328256 1.0000 120 chrX:22846524-22846644 1.0000 120 chrX:5608632-5608752 1.0000 120 chr3L:14055366-14055486 1.0000 120 chr3R:8968929-8969049 1.0000 120 chr2L:11222193-11222313 1.0000 120 chr3L:1457291-1457411 1.0000 120 chr3L:18193809-18193929 1.0000 120 chrX:10210618-10210738 1.0000 120 chr2R:10771987-10772107 1.0000 120 chr3R:4961580-4961700 1.0000 120 chrX:5044573-5044693 1.0000 120 chr3L:7792369-7792489 1.0000 120 chrX:6458033-6458153 1.0000 120 chr3R:15566508-15566628 1.0000 120 chrX:17875330-17875450 1.0000 120 chr3R:30083366-30083486 1.0000 120 chr3R:11947240-11947360 1.0000 120 chr3R:24613933-24614053 1.0000 120 chr3R:23417823-23417943 1.0000 120 chr3L:10267750-10267870 1.0000 120 chr3L:388274-388394 1.0000 120 chrX:173650-173770 1.0000 120 chrX:2452873-2452993 1.0000 120 chrX:18136210-18136330 1.0000 120 chr3L:20624758-20624878 1.0000 120 chr2L:382927-383047 1.0000 120 chrX:7541544-7541664 1.0000 120 chr2R:24541106-24541226 1.0000 120 chr3L:3449887-3450007 1.0000 120 chr3R:16501545-16501665 1.0000 120 chr3R:30501341-30501461 1.0000 120 chr2L:1145107-1145227 1.0000 120 chr3R:8142244-8142364 1.0000 120 chr2L:15329511-15329631 1.0000 120 chr2R:24836818-24836938 1.0000 120 chr2L:7973929-7974049 1.0000 120 chr3L:785877-785997 1.0000 120 chr3R:20283352-20283472 1.0000 120 chr2R:10599166-10599286 1.0000 120 chr3R:21648641-21648761 1.0000 120 chr3L:1388257-1388377 1.0000 120 chr3R:27140043-27140163 1.0000 120 chr3L:18241128-18241248 1.0000 120 chr3L:8371031-8371151 1.0000 120 chr3L:17608698-17608818 1.0000 120 chr3L:6446707-6446827 1.0000 120 chr2R:19849242-19849362 1.0000 120 chrX:15027100-15027220 1.0000 120 chr3R:23148552-23148672 1.0000 120 chr2R:10580605-10580725 1.0000 120 chr3L:1374618-1374738 1.0000 120 chrX:2648093-2648213 1.0000 120 chr3R:25461792-25461912 1.0000 120 chrX:3381134-3381254 1.0000 120 chr3L:21594532-21594652 1.0000 120 chr2R:21313181-21313301 1.0000 120 chr2R:23299471-23299591 1.0000 120 chr2L:7619356-7619476 1.0000 120 chr3R:8272708-8272828 1.0000 120 chrX:6030149-6030269 1.0000 120 chr2L:16498204-16498324 1.0000 120 chr2R:23022623-23022743 1.0000 120 chr2L:11328498-11328618 1.0000 120 chr2R:17458942-17459062 1.0000 120 chr3L:9419447-9419567 1.0000 120 chr2R:24548168-24548288 1.0000 120 chr3L:1829665-1829785 1.0000 120 chr3R:30843863-30843983 1.0000 120 chrX:17571089-17571209 1.0000 120 chr3L:4690844-4690964 1.0000 120 chr3L:8979162-8979282 1.0000 120 chr3R:25634000-25634120 1.0000 120 chr3R:4884005-4884125 1.0000 120 chr3L:21060553-21060673 1.0000 120 chrX:5026145-5026265 1.0000 120 chr3R:11859658-11859778 1.0000 120 chr3L:20403645-20403765 1.0000 120 chr3L:17502358-17502478 1.0000 120 chr2L:18678381-18678501 1.0000 120 chrX:8244430-8244550 1.0000 120 chr3R:14673057-14673177 1.0000 120 chr2R:7241728-7241848 1.0000 120 chr2L:11066136-11066256 1.0000 120 chrX:14897726-14897846 1.0000 120 chr3R:6950220-6950340 1.0000 120 chrX:17489998-17490118 1.0000 120 chrX:14073626-14073746 1.0000 120 chr2R:12741713-12741833 1.0000 120 chr3R:23486888-23487008 1.0000 120 chrX:10104613-10104733 1.0000 120 chr2L:11394256-11394376 1.0000 120 chr2R:19969850-19969970 1.0000 120 chr2R:19153409-19153529 1.0000 120 chr3L:3078479-3078599 1.0000 120 chr3R:30811319-30811439 1.0000 120 chr2L:14499174-14499294 1.0000 120 chrX:6022263-6022383 1.0000 120 chr3L:16024757-16024877 1.0000 120 chr2L:11306253-11306373 1.0000 120 chr3L:18198860-18198980 1.0000 120 chr3R:30689851-30689971 1.0000 120 chr2R:8650569-8650689 1.0000 120 chr3L:664007-664127 1.0000 120 chrX:1320524-1320644 1.0000 120 chr3R:19603129-19603249 1.0000 120 chrX:6059276-6059396 1.0000 120 chrX:19162360-19162480 1.0000 120 chrX:5923249-5923369 1.0000 120 chrX:3411977-3412097 1.0000 120 chr2L:675051-675171 1.0000 120 chrX:21074429-21074549 1.0000 120 chr3R:29778233-29778353 1.0000 120 chr2L:7376295-7376415 1.0000 120 chr2R:16812855-16812975 1.0000 120 chr3L:728015-728135 1.0000 120 chr2L:10276956-10277076 1.0000 120 chr2R:14782982-14783102 1.0000 120 chr3L:12410992-12411112 1.0000 120 chr2R:19647741-19647861 1.0000 120 chrX:5897191-5897311 1.0000 120 chrX:3060220-3060340 1.0000 120 chr3R:5103764-5103884 1.0000 120 chr3L:7783489-7783609 1.0000 120 chr2L:9496665-9496785 1.0000 120 chr2R:12532746-12532866 1.0000 120 chr2L:15743720-15743840 1.0000 120 chr3R:30842340-30842460 1.0000 120 chrX:5025459-5025579 1.0000 120 chr3L:11322611-11322731 1.0000 120 chrX:8273880-8274000 1.0000 120 chr3R:30076223-30076343 1.0000 120 chr3R:31505490-31505610 1.0000 120 chr3R:29538615-29538735 1.0000 120 chr3R:26892912-26893032 1.0000 120 chr2R:11515868-11515988 1.0000 120 chr3R:20286233-20286353 1.0000 120 chr2R:23567407-23567527 1.0000 120 chr3L:11297646-11297766 1.0000 120 chr3R:9934975-9935095 1.0000 120 chr3R:31805395-31805515 1.0000 120 chr3R:30280467-30280587 1.0000 120 chr3R:10530682-10530802 1.0000 120 chr3R:14765447-14765567 1.0000 120 chrX:13568299-13568419 1.0000 120 chr2R:21569050-21569170 1.0000 120 chr2R:12742642-12742762 1.0000 120 chr2R:16156403-16156523 1.0000 120 chr2L:18707982-18708102 1.0000 120 chrX:16966663-16966783 1.0000 120 chr2L:19397756-19397876 1.0000 120 chr2L:423304-423424 1.0000 120 chrX:7892606-7892726 1.0000 120 chrX:1826198-1826318 1.0000 120 chr3R:18742467-18742587 1.0000 120 chr2L:18645602-18645722 1.0000 120 chr3R:29096039-29096159 1.0000 120 chr2R:8195140-8195260 1.0000 120 chr2L:19142603-19142723 1.0000 120 chr3L:8399210-8399330 1.0000 120 chr2L:18628238-18628358 1.0000 120 chr3R:31225120-31225240 1.0000 120 chr2R:9064710-9064830 1.0000 120 chr3R:19113983-19114103 1.0000 120 chr2R:14968013-14968133 1.0000 120 chrX:13630461-13630581 1.0000 120 chr3L:10793986-10794106 1.0000 120 chr2R:17851616-17851736 1.0000 120 chr3L:818498-818618 1.0000 120 chr2L:2873491-2873611 1.0000 120 chr3L:8656864-8656984 1.0000 120 chr2R:21569799-21569919 1.0000 120 chr3R:5100441-5100561 1.0000 120 chr2L:3341730-3341850 1.0000 120 chrX:2365565-2365685 1.0000 120 chr3L:3343461-3343581 1.0000 120 chr2L:8361664-8361784 1.0000 120 chrX:13312291-13312411 1.0000 120 chr3L:3240447-3240567 1.0000 120 chr3R:21118920-21119040 1.0000 120 chr3R:27171313-27171433 1.0000 120 chr3R:4873895-4874015 1.0000 120 chrX:6339109-6339229 1.0000 120 chr3L:10331822-10331942 1.0000 120 chr3L:12557861-12557981 1.0000 120 chr3R:6395689-6395809 1.0000 120 chr3R:6397852-6397972 1.0000 120 chr3R:17117649-17117769 1.0000 120 chr3L:5863053-5863173 1.0000 120 chr2L:1412807-1412927 1.0000 120 chr3L:3450557-3450677 1.0000 120 chr2L:8229771-8229891 1.0000 120 chr3L:1348350-1348470 1.0000 120 chr3L:3342442-3342562 1.0000 120 chr3L:5630240-5630360 1.0000 120 chr3L:21099215-21099335 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG31627/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG31627.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.335 C 0.165 G 0.164 T 0.336 Background letter frequencies (from file dataset with add-one prior applied): A 0.335 C 0.165 G 0.164 T 0.336 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGGGCTG MEME-1 width = 8 sites = 2 llr = 27 E-value = 5.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGCTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:: probability G aaaaa::a matrix T ::::::a: bits 2.6 ****** * 2.3 ****** * 2.1 ****** * 1.8 ****** * Relative 1.6 ******** Entropy 1.3 ******** (19.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGGCTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1826198-1826318 7 1.08e-06 TTCATC GGGGGCTG GGTCGTGTTT chrX:7541544-7541664 6 1.08e-06 GAAGG GGGGGCTG GGGAATAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1826198-1826318 1.1e-06 6_[+1]_106 chrX:7541544-7541664 1.1e-06 5_[+1]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGCTG width=8 seqs=2 chrX:1826198-1826318 ( 7) GGGGGCTG 1 chrX:7541544-7541664 ( 6) GGGGGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.9e+003 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 259 -765 -765 -765 -765 -765 157 -765 -765 260 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCTG MEME-1 regular expression -------------------------------------------------------------------------------- GGGGGCTG -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF CASTGYRM MEME-2 width = 8 sites = 33 llr = 282 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASTGYRM MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::63 pos.-specific C a:5::5:5 probability G ::5:a242 matrix T :::a:3:: bits 2.6 * 2.3 * * 2.1 * * 1.8 * * Relative 1.6 ***** Entropy 1.3 ***** (12.3 bits) 1.0 ***** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGTGCAC consensus C TGA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYRM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9496665-9496785 6 4.47e-06 GGCCT CACTGCGC ACAGTGGGAC chr2L:14499174-14499294 91 4.47e-06 GTATATATTC CAGTGCGC CTCAACATTT chrX:10104613-10104733 3 4.47e-06 TA CAGTGCGC GACATAAGTT chr3R:16985686-16985806 100 4.47e-06 ATAAATAAGT CAGTGCGC CCCGCTGTTA chr2R:17458942-17459062 77 1.36e-05 AAACATGAAC CAGTGCAC TGAAGAAAAA chr3L:7783489-7783609 1 3.16e-05 . CACTGCGA AGAAGTAGAG chrX:14073626-14073746 20 3.16e-05 AGCTCAAATG CACTGCGA GAAATGCAGA chr2L:11222193-11222313 2 3.16e-05 A CAGTGGGC CATGTTCCCC chr2L:11066136-11066256 108 4.07e-05 TTCGAGGCTT CACTGTGC CCACG chr2R:19153409-19153529 113 4.98e-05 GATTTTCTCG CAGTGCAG chrX:10210618-10210738 22 4.98e-05 GTGTGTGCCA CAGTGCAG GCCACAAGTG chr3L:18193809-18193929 84 4.98e-05 ACCTTTTGAG CAGTGCAG GGTACAAAAT chr3L:3450557-3450677 90 7.74e-05 ATGAATGTAG CAGTGCAA TCAATATTCG chrX:13568299-13568419 62 7.74e-05 TATTAATATT CACTGCAA AAAACAATAA chr2R:24548168-24548288 20 7.74e-05 CACCTCAAGT CAGTGGAC TCTTTTGGCT chr2R:10580605-10580725 56 7.74e-05 TGAAAGGTTG CACTGCAA ATCACAAGAT chrX:18136210-18136330 21 7.74e-05 ATTTGGCTTT CACTGCAA ATCGCAGCGC chr3R:31956430-31956550 110 7.74e-05 ACTATAAATC CAGTGCAA ACA chr3L:3343461-3343581 112 9.60e-05 CGTTTTTTTG CACTGTAC G chrX:13630461-13630581 83 9.60e-05 TTGTTCTGAA CACTGTAC TTGTTTTTTT chr3R:31805395-31805515 64 9.60e-05 TAATAGGCAA CAGTGTAC ACTTTTTCAA chrX:3060220-3060340 91 9.60e-05 TCAAATGACG CAGTGTAC ATATAAGCGA chrX:6022263-6022383 90 9.60e-05 GATATTTACC CACTGTAC TGGCAAGCAA chr2R:12741713-12741833 111 9.60e-05 GCAGAAGCTC CACTGTAC TG chr3L:11365856-11365976 12 1.00e-04 GGAGCTGGCA CAGTGGGG CCAACGACGG chr3R:31505490-31505610 111 1.10e-04 GCACCTTCCT CACTGTGG CA chr3L:20403645-20403765 91 1.19e-04 CTGCAGTTTG CAGTGGGA AGATTATACA chr2R:8650569-8650689 8 1.37e-04 GAACTTT CACTGTGA AGGATAGCCA chrX:7541544-7541664 29 1.37e-04 TAGAAAACTA CACTGTGA GAAGTACTAC chrX:2648093-2648213 41 1.46e-04 TCTCCCAGCG CAGTGGAG CCAAAGTCCT chr3L:1374618-1374738 102 1.65e-04 AGCGAGTGAG CACTGTAG GCATGCATCT chr2L:15328136-15328256 1 1.83e-04 . CACTGGAA AAAAGCAAGA chr2R:9064710-9064830 3 2.25e-04 AA CAGTCCGC AAAGTATGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYRM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9496665-9496785 4.5e-06 5_[+2]_107 chr2L:14499174-14499294 4.5e-06 90_[+2]_22 chrX:10104613-10104733 4.5e-06 2_[+2]_110 chr3R:16985686-16985806 4.5e-06 99_[+2]_13 chr2R:17458942-17459062 1.4e-05 76_[+2]_36 chr3L:7783489-7783609 3.2e-05 [+2]_112 chrX:14073626-14073746 3.2e-05 19_[+2]_93 chr2L:11222193-11222313 3.2e-05 1_[+2]_111 chr2L:11066136-11066256 4.1e-05 107_[+2]_5 chr2R:19153409-19153529 5e-05 112_[+2] chrX:10210618-10210738 5e-05 21_[+2]_91 chr3L:18193809-18193929 5e-05 83_[+2]_29 chr3L:3450557-3450677 7.7e-05 89_[+2]_23 chrX:13568299-13568419 7.7e-05 61_[+2]_51 chr2R:24548168-24548288 7.7e-05 19_[+2]_93 chr2R:10580605-10580725 7.7e-05 55_[+2]_57 chrX:18136210-18136330 7.7e-05 20_[+2]_92 chr3R:31956430-31956550 7.7e-05 109_[+2]_3 chr3L:3343461-3343581 9.6e-05 111_[+2]_1 chrX:13630461-13630581 9.6e-05 82_[+2]_30 chr3R:31805395-31805515 9.6e-05 63_[+2]_49 chrX:3060220-3060340 9.6e-05 90_[+2]_22 chrX:6022263-6022383 9.6e-05 89_[+2]_23 chr2R:12741713-12741833 9.6e-05 110_[+2]_2 chr3L:11365856-11365976 0.0001 11_[+2]_101 chr3R:31505490-31505610 0.00011 110_[+2]_2 chr3L:20403645-20403765 0.00012 90_[+2]_22 chr2R:8650569-8650689 0.00014 7_[+2]_105 chrX:7541544-7541664 0.00014 28_[+2]_84 chrX:2648093-2648213 0.00015 40_[+2]_72 chr3L:1374618-1374738 0.00016 101_[+2]_11 chr2L:15328136-15328256 0.00018 [+2]_112 chr2R:9064710-9064830 0.00023 2_[+2]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYRM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASTGYRM width=8 seqs=33 chr2L:9496665-9496785 ( 6) CACTGCGC 1 chr2L:14499174-14499294 ( 91) CAGTGCGC 1 chrX:10104613-10104733 ( 3) CAGTGCGC 1 chr3R:16985686-16985806 ( 100) CAGTGCGC 1 chr2R:17458942-17459062 ( 77) CAGTGCAC 1 chr3L:7783489-7783609 ( 1) CACTGCGA 1 chrX:14073626-14073746 ( 20) CACTGCGA 1 chr2L:11222193-11222313 ( 2) CAGTGGGC 1 chr2L:11066136-11066256 ( 108) CACTGTGC 1 chr2R:19153409-19153529 ( 113) CAGTGCAG 1 chrX:10210618-10210738 ( 22) CAGTGCAG 1 chr3L:18193809-18193929 ( 84) CAGTGCAG 1 chr3L:3450557-3450677 ( 90) CAGTGCAA 1 chrX:13568299-13568419 ( 62) CACTGCAA 1 chr2R:24548168-24548288 ( 20) CAGTGGAC 1 chr2R:10580605-10580725 ( 56) CACTGCAA 1 chrX:18136210-18136330 ( 21) CACTGCAA 1 chr3R:31956430-31956550 ( 110) CAGTGCAA 1 chr3L:3343461-3343581 ( 112) CACTGTAC 1 chrX:13630461-13630581 ( 83) CACTGTAC 1 chr3R:31805395-31805515 ( 64) CAGTGTAC 1 chrX:3060220-3060340 ( 91) CAGTGTAC 1 chrX:6022263-6022383 ( 90) CACTGTAC 1 chr2R:12741713-12741833 ( 111) CACTGTAC 1 chr3L:11365856-11365976 ( 12) CAGTGGGG 1 chr3R:31505490-31505610 ( 111) CACTGTGG 1 chr3L:20403645-20403765 ( 91) CAGTGGGA 1 chr2R:8650569-8650689 ( 8) CACTGTGA 1 chrX:7541544-7541664 ( 29) CACTGTGA 1 chrX:2648093-2648213 ( 41) CAGTGGAG 1 chr3L:1374618-1374738 ( 102) CACTGTAG 1 chr2L:15328136-15328256 ( 1) CACTGGAA 1 chr2R:9064710-9064830 ( 3) CAGTCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYRM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 3.9e+003 -1169 260 -1169 -1169 158 -1169 -1169 -1169 -1169 155 165 -1169 -1169 -1169 -1169 157 -1169 -245 257 -1169 -1169 155 15 -1 78 -1169 137 -1169 -1 146 37 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYRM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.9e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.484848 0.515152 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.030303 0.969697 0.000000 0.000000 0.484848 0.181818 0.333333 0.575758 0.000000 0.424242 0.000000 0.333333 0.454545 0.212121 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASTGYRM MEME-2 regular expression -------------------------------------------------------------------------------- CA[GC]TG[CT][AG][CAG] -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGCGGCG MEME-3 width = 8 sites = 2 llr = 27 E-value = 8.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGCGGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :::a::a: probability G :aa:aa:a matrix T :::::::: bits 2.6 ******* 2.3 ******* 2.1 ******* 1.8 ******* Relative 1.6 ******** Entropy 1.3 ******** (19.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGGCGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8361664-8361784 59 1.08e-06 TGATTTCATC AGGCGGCG AAAAGACTAA chrX:6030149-6030269 32 1.08e-06 AAATCGAATA AGGCGGCG CGTCAATGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8361664-8361784 1.1e-06 58_[+3]_54 chrX:6030149-6030269 1.1e-06 31_[+3]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGCGGCG width=8 seqs=2 chr2L:8361664-8361784 ( 59) AGGCGGCG 1 chrX:6030149-6030269 ( 32) AGGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.1e+003 157 -765 -765 -765 -765 -765 260 -765 -765 -765 260 -765 -765 259 -765 -765 -765 -765 260 -765 -765 -765 260 -765 -765 259 -765 -765 -765 -765 260 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.1e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGCG MEME-3 regular expression -------------------------------------------------------------------------------- AGGCGGCG -------------------------------------------------------------------------------- Time 19.78 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTGGCCA MEME-4 width = 8 sites = 15 llr = 149 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTGGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::9 pos.-specific C 6:2:1aa1 probability G 13:a9::: matrix T 378::::: bits 2.6 * ** 2.3 **** 2.1 **** 1.8 **** Relative 1.6 **** Entropy 1.3 **** (14.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTTGGCCA consensus TGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTGGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7619356-7619476 44 6.80e-06 TTCTATAAGT CTTGGCCA ACAATCACGA chrX:15027100-15027220 13 6.80e-06 TGTACATCAA CTTGGCCA CAATTGCAAG chr2R:20136861-20136981 55 6.80e-06 GAACCATTAT CTTGGCCA AAGTGCAGTG chr3R:31505490-31505610 51 1.01e-05 GATCATAAAA CTCGGCCA GTACAATTTG chrX:1320524-1320644 4 1.01e-05 GGA CTCGGCCA CAAGGATTCT chr3R:30689851-30689971 102 1.01e-05 GCCGCTTTCG CGCGGCCA TCGTATTTGG chr3L:10793986-10794106 1 1.35e-05 . CGTGGCCC CTTGCACTTG chrX:173650-173770 35 1.35e-05 TAAGTATTAC CTTGGCCC GTACTGATTG chr2R:9064710-9064830 40 2.73e-05 TTAAATAGCT TGTGGCCA AATAGTGTTT chrX:13568299-13568419 4 2.73e-05 AAA TTTGGCCA AAGAAATACC chrX:5044573-5044693 9 2.73e-05 TCAAATGG TTTGGCCA CGAAAATGTA chrX:17760654-17760774 29 2.73e-05 GGTCAAGTGC TGTGGCCA CAACAATGTT chr3L:6220307-6220427 5 2.73e-05 GCAT TTTGGCCA AATACGAAGT chrX:6339109-6339229 3 4.25e-05 TG GGTGGCCA GGAAGGGGGC chr2R:12742642-12742762 75 5.62e-05 AAAGCGATTG CTTGCCCA ATTGAGAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTGGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7619356-7619476 6.8e-06 43_[+4]_69 chrX:15027100-15027220 6.8e-06 12_[+4]_100 chr2R:20136861-20136981 6.8e-06 54_[+4]_58 chr3R:31505490-31505610 1e-05 50_[+4]_62 chrX:1320524-1320644 1e-05 3_[+4]_109 chr3R:30689851-30689971 1e-05 101_[+4]_11 chr3L:10793986-10794106 1.3e-05 [+4]_112 chrX:173650-173770 1.3e-05 34_[+4]_78 chr2R:9064710-9064830 2.7e-05 39_[+4]_73 chrX:13568299-13568419 2.7e-05 3_[+4]_109 chrX:5044573-5044693 2.7e-05 8_[+4]_104 chrX:17760654-17760774 2.7e-05 28_[+4]_84 chr3L:6220307-6220427 2.7e-05 4_[+4]_108 chrX:6339109-6339229 4.3e-05 2_[+4]_110 chr2R:12742642-12742762 5.6e-05 74_[+4]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTGGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTGGCCA width=8 seqs=15 chr2L:7619356-7619476 ( 44) CTTGGCCA 1 chrX:15027100-15027220 ( 13) CTTGGCCA 1 chr2R:20136861-20136981 ( 55) CTTGGCCA 1 chr3R:31505490-31505610 ( 51) CTCGGCCA 1 chrX:1320524-1320644 ( 4) CTCGGCCA 1 chr3R:30689851-30689971 ( 102) CGCGGCCA 1 chr3L:10793986-10794106 ( 1) CGTGGCCC 1 chrX:173650-173770 ( 35) CTTGGCCC 1 chr2R:9064710-9064830 ( 40) TGTGGCCA 1 chrX:13568299-13568419 ( 4) TTTGGCCA 1 chrX:5044573-5044693 ( 9) TTTGGCCA 1 chrX:17760654-17760774 ( 29) TGTGGCCA 1 chr3L:6220307-6220427 ( 5) TTTGGCCA 1 chrX:6339109-6339229 ( 3) GGTGGCCA 1 chr2R:12742642-12742762 ( 75) CTTGCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTGGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 1.3e+004 -1055 186 -129 -1 -1055 -1055 103 99 -1055 27 -1055 125 -1055 -1055 261 -1055 -1055 -131 251 -1055 -1055 260 -1055 -1055 -1055 260 -1055 -1055 137 -31 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTGGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.3e+004 0.000000 0.600000 0.066667 0.333333 0.000000 0.000000 0.333333 0.666667 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.133333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTGGCCA MEME-4 regular expression -------------------------------------------------------------------------------- [CT][TG][TC]GGCCA -------------------------------------------------------------------------------- Time 26.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GGACGSGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGACGSGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :::a:5:: probability G aa::a5aa matrix T :::::::: bits 2.6 ** ** ** 2.3 ** ** ** 2.1 ** ** ** 1.8 ** ** ** Relative 1.6 ******** Entropy 1.3 ******** (18.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGACGCGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGSGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8273880-8274000 25 2.16e-06 TTCCGGGGGT GGACGGGG TGCCAACCGA chr2L:10276956-10277076 77 2.16e-06 TATTTGCGTC GGACGCGG TCTGCCTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGSGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8273880-8274000 2.2e-06 24_[+5]_88 chr2L:10276956-10277076 2.2e-06 76_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGSGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGACGSGG width=8 seqs=2 chrX:8273880-8274000 ( 25) GGACGGGG 1 chr2L:10276956-10277076 ( 77) GGACGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGSGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.4e+004 -765 -765 260 -765 -765 -765 260 -765 157 -765 -765 -765 -765 259 -765 -765 -765 -765 260 -765 -765 159 161 -765 -765 -765 260 -765 -765 -765 260 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGSGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGACGSGG MEME-5 regular expression -------------------------------------------------------------------------------- GGACG[CG]GG -------------------------------------------------------------------------------- Time 32.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10359543-10359663 4.88e-01 120 chr3L:6471973-6472093 9.82e-01 120 chr3L:8763949-8764069 3.82e-01 120 chr3R:16985686-16985806 4.60e-03 99_[+2(4.47e-06)]_13 chr2R:16685730-16685850 1.97e-01 120 chr2L:7992074-7992194 9.98e-01 120 chr2L:11399615-11399735 8.94e-01 120 chr3R:22628059-22628179 9.90e-01 120 chr3R:31424563-31424683 9.34e-01 120 chr3L:3074495-3074615 7.80e-01 120 chr3L:3246903-3247023 9.95e-01 120 chr3R:26192421-26192541 7.41e-01 120 chr2R:18610467-18610587 9.36e-01 120 chr2L:7573341-7573461 8.24e-01 120 chr3L:8368810-8368930 1.86e-04 103_[+3(4.18e-05)]_9 chr2L:9438364-9438484 3.13e-01 120 chr3R:13793465-13793585 1.00e+00 120 chr3R:21827591-21827711 4.72e-01 120 chr3L:21738852-21738972 6.83e-01 120 chr3R:9913599-9913719 9.74e-01 120 chrX:13541344-13541464 4.92e-01 120 chrX:1897528-1897648 1.77e-01 120 chr3R:8116063-8116183 6.56e-01 120 chr3R:31308971-31309091 7.22e-01 120 chr3L:761838-761958 6.68e-01 120 chr3R:31956430-31956550 1.46e-01 109_[+2(7.74e-05)]_3 chrX:17172261-17172381 4.25e-01 120 chrX:9892971-9893091 9.82e-01 120 chrX:14750600-14750720 9.50e-01 120 chr2R:10237796-10237916 1.00e+00 120 chr2L:650996-651116 2.61e-01 120 chr3L:2795676-2795796 4.08e-01 100_[+4(8.69e-05)]_12 chr2L:11220942-11221062 9.13e-01 120 chr2L:3554058-3554178 7.57e-01 120 chr3L:18406067-18406187 9.67e-01 120 chrX:17545698-17545818 1.00e+00 120 chr3L:3785857-3785977 9.90e-01 120 chr3L:11365856-11365976 3.68e-04 120 chr2R:22545874-22545994 8.25e-01 120 chr3R:31505290-31505410 7.54e-02 33_[+5(7.67e-05)]_79 chrX:5026808-5026928 4.58e-01 120 chr3L:6220307-6220427 4.13e-02 4_[+4(2.73e-05)]_108 chr2R:6144360-6144480 8.88e-01 120 chr3R:30281376-30281496 6.01e-01 120 chr3R:10579668-10579788 8.03e-01 120 chrX:19164869-19164989 1.81e-01 120 chr2L:634301-634421 1.47e-01 120 chrX:17760654-17760774 3.29e-02 28_[+4(2.73e-05)]_84 chr2R:23237481-23237601 5.31e-01 120 chr3L:1458147-1458267 4.97e-01 120 chr2R:8659673-8659793 6.33e-01 120 chr2R:20136861-20136981 3.79e-03 54_[+4(6.80e-06)]_58 chr3R:29763924-29764044 8.37e-01 120 chr3L:13410200-13410320 9.01e-01 120 chr2L:15328136-15328256 4.57e-01 120 chrX:22846524-22846644 5.01e-01 120 chrX:5608632-5608752 8.37e-01 120 chr3L:14055366-14055486 9.85e-01 120 chr3R:8968929-8969049 9.76e-01 120 chr2L:11222193-11222313 2.01e-02 1_[+2(3.16e-05)]_111 chr3L:1457291-1457411 2.19e-01 120 chr3L:18193809-18193929 1.89e-01 83_[+2(4.98e-05)]_29 chrX:10210618-10210738 1.34e-02 21_[+2(4.98e-05)]_91 chr2R:10771987-10772107 4.59e-01 120 chr3R:4961580-4961700 9.45e-01 120 chrX:5044573-5044693 7.11e-02 8_[+4(2.73e-05)]_104 chr3L:7792369-7792489 2.59e-01 120 chrX:6458033-6458153 8.52e-01 120 chr3R:15566508-15566628 3.45e-01 120 chrX:17875330-17875450 2.88e-01 120 chr3R:30083366-30083486 8.23e-01 120 chr3R:11947240-11947360 2.91e-01 120 chr3R:24613933-24614053 5.02e-03 95_[+5(7.67e-05)]_17 chr3R:23417823-23417943 8.34e-01 120 chr3L:10267750-10267870 9.67e-01 120 chr3L:388274-388394 5.49e-01 120 chrX:173650-173770 8.89e-02 34_[+4(1.35e-05)]_78 chrX:2452873-2452993 9.46e-02 120 chrX:18136210-18136330 1.30e-02 20_[+2(7.74e-05)]_92 chr3L:20624758-20624878 8.48e-01 120 chr2L:382927-383047 1.00e+00 120 chrX:7541544-7541664 3.29e-05 5_[+1(1.08e-06)]_107 chr2R:24541106-24541226 2.96e-01 120 chr3L:3449887-3450007 7.39e-02 120 chr3R:16501545-16501665 9.22e-01 120 chr3R:30501341-30501461 9.28e-01 120 chr2L:1145107-1145227 6.04e-02 32_[+5(7.67e-05)]_80 chr3R:8142244-8142364 9.62e-01 120 chr2L:15329511-15329631 7.06e-01 120 chr2R:24836818-24836938 8.84e-01 120 chr2L:7973929-7974049 8.85e-01 120 chr3L:785877-785997 9.86e-01 120 chr3R:20283352-20283472 2.25e-01 120 chr2R:10599166-10599286 8.08e-01 120 chr3R:21648641-21648761 1.76e-01 120 chr3L:1388257-1388377 3.01e-01 120 chr3R:27140043-27140163 5.80e-01 120 chr3L:18241128-18241248 9.92e-01 120 chr3L:8371031-8371151 5.48e-01 120 chr3L:17608698-17608818 6.08e-02 120 chr3L:6446707-6446827 9.98e-01 120 chr2R:19849242-19849362 9.38e-01 120 chrX:15027100-15027220 6.63e-03 12_[+4(6.80e-06)]_100 chr3R:23148552-23148672 5.12e-03 120 chr2R:10580605-10580725 2.05e-01 55_[+2(7.74e-05)]_57 chr3L:1374618-1374738 2.85e-01 120 chrX:2648093-2648213 1.38e-02 120 chr3R:25461792-25461912 9.91e-01 120 chrX:3381134-3381254 9.10e-01 120 chr3L:21594532-21594652 1.42e-01 120 chr2R:21313181-21313301 2.03e-01 120 chr2R:23299471-23299591 4.05e-01 120 chr2L:7619356-7619476 3.13e-02 43_[+4(6.80e-06)]_69 chr3R:8272708-8272828 6.73e-01 120 chrX:6030149-6030269 5.35e-04 31_[+3(1.08e-06)]_81 chr2L:16498204-16498324 9.96e-01 120 chr2R:23022623-23022743 9.94e-01 120 chr2L:11328498-11328618 9.75e-01 120 chr2R:17458942-17459062 3.96e-02 76_[+2(1.36e-05)]_36 chr3L:9419447-9419567 1.55e-01 120 chr2R:24548168-24548288 1.37e-01 19_[+2(7.74e-05)]_93 chr3L:1829665-1829785 9.45e-01 120 chr3R:30843863-30843983 8.33e-01 120 chrX:17571089-17571209 9.71e-02 120 chr3L:4690844-4690964 7.83e-01 120 chr3L:8979162-8979282 8.71e-01 120 chr3R:25634000-25634120 9.93e-01 120 chr3R:4884005-4884125 8.22e-01 120 chr3L:21060553-21060673 5.06e-01 120 chrX:5026145-5026265 9.73e-01 120 chr3R:11859658-11859778 9.13e-01 120 chr3L:20403645-20403765 1.35e-01 120 chr3L:17502358-17502478 1.00e+00 120 chr2L:18678381-18678501 7.03e-01 120 chrX:8244430-8244550 6.62e-02 120 chr3R:14673057-14673177 9.96e-01 120 chr2R:7241728-7241848 9.98e-01 120 chr2L:11066136-11066256 1.09e-02 107_[+2(4.07e-05)]_5 chrX:14897726-14897846 9.49e-01 120 chr3R:6950220-6950340 5.48e-01 120 chrX:17489998-17490118 1.00e+00 120 chrX:14073626-14073746 2.17e-01 19_[+2(3.16e-05)]_93 chr2R:12741713-12741833 1.75e-01 110_[+2(9.60e-05)]_2 chr3R:23486888-23487008 9.84e-01 120 chrX:10104613-10104733 2.74e-02 2_[+2(4.47e-06)]_110 chr2L:11394256-11394376 4.20e-01 120 chr2R:19969850-19969970 3.49e-01 120 chr2R:19153409-19153529 1.48e-01 112_[+2(4.98e-05)] chr3L:3078479-3078599 4.16e-01 120 chr3R:30811319-30811439 7.32e-01 120 chr2L:14499174-14499294 1.97e-02 90_[+2(4.47e-06)]_22 chrX:6022263-6022383 1.61e-01 89_[+2(9.60e-05)]_23 chr3L:16024757-16024877 7.78e-01 120 chr2L:11306253-11306373 7.96e-01 120 chr3L:18198860-18198980 8.25e-01 120 chr3R:30689851-30689971 2.34e-02 101_[+4(1.01e-05)]_11 chr2R:8650569-8650689 2.43e-01 120 chr3L:664007-664127 2.74e-01 120 chrX:1320524-1320644 2.52e-03 3_[+4(1.01e-05)]_109 chr3R:19603129-19603249 6.24e-01 120 chrX:6059276-6059396 4.51e-01 120 chrX:19162360-19162480 5.23e-01 120 chrX:5923249-5923369 3.97e-01 120 chrX:3411977-3412097 2.59e-01 120 chr2L:675051-675171 5.32e-01 120 chrX:21074429-21074549 8.81e-01 120 chr3R:29778233-29778353 9.69e-01 120 chr2L:7376295-7376415 9.39e-01 120 chr2R:16812855-16812975 9.77e-01 120 chr3L:728015-728135 8.35e-01 120 chr2L:10276956-10277076 4.44e-04 76_[+5(2.16e-06)]_36 chr2R:14782982-14783102 9.52e-01 120 chr3L:12410992-12411112 5.91e-01 120 chr2R:19647741-19647861 9.15e-01 120 chrX:5897191-5897311 9.16e-01 120 chrX:3060220-3060340 8.17e-02 90_[+2(9.60e-05)]_22 chr3R:5103764-5103884 2.09e-01 120 chr3L:7783489-7783609 2.64e-01 [+2(3.16e-05)]_112 chr2L:9496665-9496785 2.01e-04 5_[+2(4.47e-06)]_107 chr2R:12532746-12532866 3.69e-01 120 chr2L:15743720-15743840 5.35e-01 120 chr3R:30842340-30842460 9.55e-01 120 chrX:5025459-5025579 7.41e-01 120 chr3L:11322611-11322731 2.36e-01 120 chrX:8273880-8274000 7.20e-05 24_[+5(2.16e-06)]_88 chr3R:30076223-30076343 1.69e-01 120 chr3R:31505490-31505610 4.44e-03 50_[+4(1.01e-05)]_62 chr3R:29538615-29538735 2.80e-01 120 chr3R:26892912-26893032 9.97e-01 120 chr2R:11515868-11515988 9.07e-01 120 chr3R:20286233-20286353 3.08e-01 120 chr2R:23567407-23567527 2.90e-01 120 chr3L:11297646-11297766 5.80e-01 120 chr3R:9934975-9935095 8.46e-01 120 chr3R:31805395-31805515 1.21e-02 63_[+2(9.60e-05)]_49 chr3R:30280467-30280587 8.57e-01 120 chr3R:10530682-10530802 8.39e-01 120 chr3R:14765447-14765567 8.30e-01 120 chrX:13568299-13568419 1.04e-02 3_[+4(2.73e-05)]_50_[+2(7.74e-05)]_\ 51 chr2R:21569050-21569170 6.69e-01 120 chr2R:12742642-12742762 1.95e-01 74_[+4(5.62e-05)]_38 chr2R:16156403-16156523 8.44e-01 120 chr2L:18707982-18708102 1.03e-01 120 chrX:16966663-16966783 8.40e-01 120 chr2L:19397756-19397876 5.90e-01 120 chr2L:423304-423424 8.34e-01 120 chrX:7892606-7892726 9.95e-01 120 chrX:1826198-1826318 2.08e-04 6_[+1(1.08e-06)]_106 chr3R:18742467-18742587 8.78e-01 120 chr2L:18645602-18645722 7.76e-01 120 chr3R:29096039-29096159 8.82e-01 120 chr2R:8195140-8195260 5.57e-01 120 chr2L:19142603-19142723 9.99e-01 120 chr3L:8399210-8399330 6.10e-01 120 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8.66e-01 120 chr3R:6395689-6395809 9.79e-01 120 chr3R:6397852-6397972 4.68e-01 120 chr3R:17117649-17117769 5.76e-01 120 chr3L:5863053-5863173 9.31e-01 120 chr2L:1412807-1412927 8.16e-01 120 chr3L:3450557-3450677 1.16e-01 89_[+2(7.74e-05)]_23 chr2L:8229771-8229891 9.98e-01 120 chr3L:1348350-1348470 7.64e-01 120 chr3L:3342442-3342562 9.65e-01 120 chr3L:5630240-5630360 7.82e-01 120 chr3L:21099215-21099335 1.00e+00 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************