******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG31388.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:23512815-23512935 1.0000 120 chr2R:5128326-5128446 1.0000 120 chr2R:2262405-2262525 1.0000 120 chr2R:5122241-5122361 1.0000 120 chr3L:20823315-20823435 1.0000 120 chr2R:13261847-13261967 1.0000 120 chr2R:7139402-7139522 1.0000 120 chr3L:9614056-9614176 1.0000 120 chr3L:12533790-12533910 1.0000 120 chr3R:5636949-5637069 1.0000 120 chr3L:11285288-11285408 1.0000 120 chr2R:11970303-11970423 1.0000 120 chr3R:24817127-24817247 1.0000 120 chr3R:29522258-29522378 1.0000 120 chr2R:9935665-9935785 1.0000 120 chr3R:5660238-5660358 1.0000 120 chr2L:16703840-16703960 1.0000 120 chrX:8601257-8601377 1.0000 120 chr2R:21018420-21018540 1.0000 120 chr2L:8746310-8746430 1.0000 120 chr3L:10784727-10784847 1.0000 120 chrX:11925386-11925506 1.0000 120 chrX:11715442-11715562 1.0000 120 chr3L:11785467-11785587 1.0000 120 chr2L:10698114-10698234 1.0000 120 chr3L:4262473-4262593 1.0000 120 chr3R:31252688-31252808 1.0000 120 chr2R:23574855-23574975 1.0000 120 chr2L:15248725-15248845 1.0000 120 chr3L:1940959-1941079 1.0000 120 chr3L:12277446-12277566 1.0000 120 chr3L:11328363-11328483 1.0000 120 chr2R:19205410-19205530 1.0000 120 chr3L:3305652-3305772 1.0000 120 chr2L:14307591-14307711 1.0000 120 chr3R:13999699-13999819 1.0000 120 chr3R:23293636-23293756 1.0000 120 chr3L:13911731-13911851 1.0000 120 chr3R:23735335-23735455 1.0000 120 chrX:11629133-11629253 1.0000 120 chr2R:16178629-16178749 1.0000 120 chr3R:20285821-20285941 1.0000 120 chr3R:13779338-13779458 1.0000 120 chr2R:1513424-1513544 1.0000 120 chr3R:6760870-6760990 1.0000 120 chr3L:12050754-12050874 1.0000 120 chr3L:12504157-12504277 1.0000 120 chr2R:1513187-1513307 1.0000 120 chr3R:16469702-16469822 1.0000 120 chr2R:23554514-23554634 1.0000 120 chr3L:20710600-20710720 1.0000 120 chr3L:10745706-10745826 1.0000 120 chr3L:13450319-13450439 1.0000 120 chr2L:7890701-7890821 1.0000 120 chr2R:20319521-20319641 1.0000 120 chr3L:10344178-10344298 1.0000 120 chr3R:29748831-29748951 1.0000 120 chr2L:10516853-10516973 1.0000 120 chr3L:5988898-5989018 1.0000 120 chr3L:12037900-12038020 1.0000 120 chr2L:7632894-7633014 1.0000 120 chr3L:21347352-21347472 1.0000 120 chr3L:14999685-14999805 1.0000 120 chr2L:8602733-8602853 1.0000 120 chr3L:3389707-3389827 1.0000 120 chr2R:21323887-21324007 1.0000 120 chr2L:6280391-6280511 1.0000 120 chr3R:10494285-10494405 1.0000 120 chr3L:563107-563227 1.0000 120 chr3R:11852123-11852243 1.0000 120 chr3L:16045418-16045538 1.0000 120 chr3R:26104370-26104490 1.0000 120 chrX:8777216-8777336 1.0000 120 chr2L:6357058-6357178 1.0000 120 chr3L:18003734-18003854 1.0000 120 chr3L:9442254-9442374 1.0000 120 chr2R:16110252-16110372 1.0000 120 chr2R:16800206-16800326 1.0000 120 chr3L:9129163-9129283 1.0000 120 chr3L:8072800-8072920 1.0000 120 chrX:11108322-11108442 1.0000 120 chr2R:12337689-12337809 1.0000 120 chr2L:21624028-21624148 1.0000 120 chr3R:4387536-4387656 1.0000 120 chrX:4616936-4617056 1.0000 120 chr3L:1029691-1029811 1.0000 120 chr2L:10522587-10522707 1.0000 120 chr3L:15826524-15826644 1.0000 120 chr2L:21163547-21163667 1.0000 120 chr2L:7258216-7258336 1.0000 120 chr2L:5798141-5798261 1.0000 120 chr3R:25004894-25005014 1.0000 120 chr2L:6323505-6323625 1.0000 120 chr2R:20067278-20067398 1.0000 120 chrX:526564-526684 1.0000 120 chr2L:11453109-11453229 1.0000 120 chr2R:18647162-18647282 1.0000 120 chr3R:18021343-18021463 1.0000 120 chr3R:14674947-14675067 1.0000 120 chr3R:20008801-20008921 1.0000 120 chr2L:7033465-7033585 1.0000 120 chr2R:13998487-13998607 1.0000 120 chr2L:8834948-8835068 1.0000 120 chr2R:23377114-23377234 1.0000 120 chr3R:9801076-9801196 1.0000 120 chrX:3007911-3008031 1.0000 120 chr2R:14771050-14771170 1.0000 120 chr3R:23212091-23212211 1.0000 120 chr3R:12369774-12369894 1.0000 120 chr2L:18666069-18666189 1.0000 120 chr3R:21671791-21671911 1.0000 120 chr3L:11261004-11261124 1.0000 120 chr3R:7151042-7151162 1.0000 120 chr2R:16608457-16608577 1.0000 120 chr2R:14624599-14624719 1.0000 120 chr3L:16087574-16087694 1.0000 120 chrX:17751827-17751947 1.0000 120 chr3R:31169121-31169241 1.0000 120 chr3R:29894542-29894662 1.0000 120 chr2R:20838088-20838208 1.0000 120 chr2R:14434339-14434459 1.0000 120 chr2R:15201330-15201450 1.0000 120 chr2R:13990784-13990904 1.0000 120 chr3L:20242116-20242236 1.0000 120 chr2L:2885660-2885780 1.0000 120 chr3L:12813986-12814106 1.0000 120 chr2R:14284399-14284519 1.0000 120 chr3R:31064796-31064916 1.0000 120 chr2L:2426633-2426753 1.0000 120 chr2R:14342716-14342836 1.0000 120 chr3L:4016892-4017012 1.0000 120 chr3R:11613274-11613394 1.0000 120 chr3L:12136802-12136922 1.0000 120 chrX:1953042-1953162 1.0000 120 chr2R:23652379-23652499 1.0000 120 chr3R:16524783-16524903 1.0000 120 chr3R:5485327-5485447 1.0000 120 chr3R:5299132-5299252 1.0000 120 chr2L:20075502-20075622 1.0000 120 chr2L:8860835-8860955 1.0000 120 chr3L:5869732-5869852 1.0000 120 chr3R:18795465-18795585 1.0000 120 chr3L:17476045-17476165 1.0000 120 chr3R:13425568-13425688 1.0000 120 chr3L:9034426-9034546 1.0000 120 chr3L:15533560-15533680 1.0000 120 chrX:2533958-2534078 1.0000 120 chr2L:10467012-10467132 1.0000 120 chr3R:8126400-8126520 1.0000 120 chr2R:11601052-11601172 1.0000 120 chr3R:21487901-21488021 1.0000 120 chr3L:350756-350876 1.0000 120 chr2L:11192763-11192883 1.0000 120 chr2R:18689599-18689719 1.0000 120 chr3L:3952530-3952650 1.0000 120 chr3R:19623790-19623910 1.0000 120 chr3R:14089009-14089129 1.0000 120 chr3L:7718627-7718747 1.0000 120 chr3R:22690345-22690465 1.0000 120 chr2L:18987528-18987648 1.0000 120 chr2L:16888312-16888432 1.0000 120 chr2L:13515072-13515192 1.0000 120 chr3R:22597687-22597807 1.0000 120 chr2L:13192027-13192147 1.0000 120 chr2L:6557511-6557631 1.0000 120 chr3R:17941181-17941301 1.0000 120 chr3R:16869323-16869443 1.0000 120 chr3L:21604401-21604521 1.0000 120 chr3R:31325156-31325276 1.0000 120 chr3L:8315626-8315746 1.0000 120 chr2L:18693937-18694057 1.0000 120 chr2R:17892949-17893069 1.0000 120 chr3R:20556386-20556506 1.0000 120 chrX:13749575-13749695 1.0000 120 chr3R:6368234-6368354 1.0000 120 chr3R:14714590-14714710 1.0000 120 chr2L:3657376-3657496 1.0000 120 chr3L:2806113-2806233 1.0000 120 chr3L:6217430-6217550 1.0000 120 chr3R:14714822-14714942 1.0000 120 chrX:1669354-1669474 1.0000 120 chr3L:13957345-13957465 1.0000 120 chr3R:18223553-18223673 1.0000 120 chrX:8114627-8114747 1.0000 120 chr2L:855343-855463 1.0000 120 chr2L:10299936-10300056 1.0000 120 chr2R:14214916-14215036 1.0000 120 chrX:10857478-10857598 1.0000 120 chr3R:13454112-13454232 1.0000 120 chr2L:4045516-4045636 1.0000 120 chr3R:24557012-24557132 1.0000 120 chr2L:20061169-20061289 1.0000 120 chr2L:19014680-19014800 1.0000 120 chr2L:9498211-9498331 1.0000 120 chrX:5700290-5700410 1.0000 120 chr3L:4040452-4040572 1.0000 120 chr2R:19271492-19271612 1.0000 120 chr3L:21539573-21539693 1.0000 120 chr3R:20292612-20292732 1.0000 120 chr2L:8852367-8852487 1.0000 120 chrX:7893827-7893947 1.0000 120 chr2L:16644036-16644156 1.0000 120 chr3L:15940913-15941033 1.0000 120 chr3R:16524195-16524315 1.0000 120 chr3L:21828316-21828436 1.0000 120 chr3R:22663239-22663359 1.0000 120 chrX:17713928-17714048 1.0000 120 chr3R:18746077-18746197 1.0000 120 chr2L:10292282-10292402 1.0000 120 chr2L:14515792-14515912 1.0000 120 chr2L:9633911-9634031 1.0000 120 chr3L:9023692-9023812 1.0000 120 chr3L:2537296-2537416 1.0000 120 chr2L:21846490-21846610 1.0000 120 chr2R:18694907-18695027 1.0000 120 chr3L:20452999-20453119 1.0000 120 chr3L:21464458-21464578 1.0000 120 chr3L:16986298-16986418 1.0000 120 chr2R:15308264-15308384 1.0000 120 chr3R:9054693-9054813 1.0000 120 chr2L:3789509-3789629 1.0000 120 chr2R:20062808-20062928 1.0000 120 chr3L:8996307-8996427 1.0000 120 chrX:13563524-13563644 1.0000 120 chr3L:9856594-9856714 1.0000 120 chr2R:22937505-22937625 1.0000 120 chr3L:7323475-7323595 1.0000 120 chr3L:2631522-2631642 1.0000 120 chr2L:8541984-8542104 1.0000 120 chr2R:21034027-21034147 1.0000 120 chrX:7335035-7335155 1.0000 120 chrX:20495981-20496101 1.0000 120 chr3R:26963799-26963919 1.0000 120 chr2R:24539286-24539406 1.0000 120 chrX:7332648-7332768 1.0000 120 chr2L:3827831-3827951 1.0000 120 chr3R:23714035-23714155 1.0000 120 chr2L:2193523-2193643 1.0000 120 chrX:8774124-8774244 1.0000 120 chr3R:14478738-14478858 1.0000 120 chr3L:11415414-11415534 1.0000 120 chrX:13323326-13323446 1.0000 120 chr3L:14781633-14781753 1.0000 120 chr3R:22624906-22625026 1.0000 120 chr2L:19358115-19358235 1.0000 120 chr2R:9167565-9167685 1.0000 120 chr2L:18558237-18558357 1.0000 120 chr3L:2590594-2590714 1.0000 120 chrX:10832499-10832619 1.0000 120 chr2L:9133444-9133564 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG31388/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG31388.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.338 C 0.162 G 0.165 T 0.335 Background letter frequencies (from file dataset with add-one prior applied): A 0.338 C 0.162 G 0.165 T 0.335 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCCAYC MEME-1 width = 8 sites = 19 llr = 208 E-value = 5.3e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 11:1:9:1 pos.-specific C :9:9a169 probability G 9:9::::1 matrix T ::1:::4: bits 2.6 * 2.4 *** * 2.1 ***** * 1.8 ***** * Relative 1.6 ***** * Entropy 1.3 ******** (15.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCACC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10832499-10832619 65 1.03e-06 TAGCTTAATA GCGCCACC TAGCTGCAAT chrX:13563524-13563644 26 1.03e-06 ACTATCATTG GCGCCACC TATGAGATGA chr2R:23652379-23652499 47 1.03e-06 AATAGGAACA GCGCCACC TGCTTGCGAA chr3R:11613274-11613394 9 1.03e-06 GCTTTAAA GCGCCACC TAGCAAAGTA chr2R:16800206-16800326 14 1.03e-06 AACTGAACTA GCGCCACC TGAGACTGCA chr2L:16888312-16888432 67 3.15e-06 ACAGCTGTAC GCGCCATC TTCACCAGAA chrX:1953042-1953162 75 3.15e-06 CAGTTGGCTG GCGCCATC TGTGCAGCAG chr2R:14624599-14624719 13 3.15e-06 ACAACTAAGA GCGCCATC TGTTATCCGT chr2L:6323505-6323625 69 3.15e-06 AATCACCAAG GCGCCATC TATAAATAAA chr2L:7258216-7258336 97 3.15e-06 AGCGCCCAGT GCGCCATC TAGCAGAACT chr3R:16869323-16869443 24 3.64e-06 TTTTGCGCTG GCGCCCCC TATTGTTTTT chr2L:6280391-6280511 20 4.66e-06 TTTGCATGTG GCGCCCTC TGCTGGGAAG chr3R:5299132-5299252 45 7.85e-06 GTGAGCATGA GCGACACC TGGCGGCAGA chr3R:24557012-24557132 65 1.63e-05 GTAGAATGAA ACGCCACC TACTCAGCCA chr3L:21604401-21604521 45 1.63e-05 TTGGGGTATA GAGCCACC TATGGGTGTG chr3R:14089009-14089129 9 1.63e-05 GAAAAATA GCTCCACC TAGCGGTGAA chr3R:29748831-29748951 10 1.63e-05 AAGTTGGCT GCGCCACA ACGAGTGTTA chr2L:3657376-3657496 11 2.29e-05 GATTAACTCT GCGCCATG ATTTATTCAA chr2R:14434339-14434459 16 2.29e-05 TGTCACACCA GCGACATC TATGGAGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10832499-10832619 1e-06 64_[+1]_48 chrX:13563524-13563644 1e-06 25_[+1]_87 chr2R:23652379-23652499 1e-06 46_[+1]_66 chr3R:11613274-11613394 1e-06 8_[+1]_104 chr2R:16800206-16800326 1e-06 13_[+1]_99 chr2L:16888312-16888432 3.1e-06 66_[+1]_46 chrX:1953042-1953162 3.1e-06 74_[+1]_38 chr2R:14624599-14624719 3.1e-06 12_[+1]_100 chr2L:6323505-6323625 3.1e-06 68_[+1]_44 chr2L:7258216-7258336 3.1e-06 96_[+1]_16 chr3R:16869323-16869443 3.6e-06 23_[+1]_89 chr2L:6280391-6280511 4.7e-06 19_[+1]_93 chr3R:5299132-5299252 7.8e-06 44_[+1]_68 chr3R:24557012-24557132 1.6e-05 64_[+1]_48 chr3L:21604401-21604521 1.6e-05 44_[+1]_68 chr3R:14089009-14089129 1.6e-05 8_[+1]_104 chr3R:29748831-29748951 1.6e-05 9_[+1]_103 chr2L:3657376-3657496 2.3e-05 10_[+1]_102 chr2R:14434339-14434459 2.3e-05 15_[+1]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAYC width=8 seqs=19 chrX:10832499-10832619 ( 65) GCGCCACC 1 chrX:13563524-13563644 ( 26) GCGCCACC 1 chr2R:23652379-23652499 ( 47) GCGCCACC 1 chr3R:11613274-11613394 ( 9) GCGCCACC 1 chr2R:16800206-16800326 ( 14) GCGCCACC 1 chr2L:16888312-16888432 ( 67) GCGCCATC 1 chrX:1953042-1953162 ( 75) GCGCCATC 1 chr2R:14624599-14624719 ( 13) GCGCCATC 1 chr2L:6323505-6323625 ( 69) GCGCCATC 1 chr2L:7258216-7258336 ( 97) GCGCCATC 1 chr3R:16869323-16869443 ( 24) GCGCCCCC 1 chr2L:6280391-6280511 ( 20) GCGCCCTC 1 chr3R:5299132-5299252 ( 45) GCGACACC 1 chr3R:24557012-24557132 ( 65) ACGCCACC 1 chr3L:21604401-21604521 ( 45) GAGCCACC 1 chr3R:14089009-14089129 ( 9) GCTCCACC 1 chr3R:29748831-29748951 ( 10) GCGCCACA 1 chr2L:3657376-3657496 ( 11) GCGCCATG 1 chr2R:14434339-14434459 ( 16) GCGACATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 5.3e-010 -268 -1089 252 -1089 -268 255 -1089 -1089 -1089 -1089 252 -267 -168 247 -1089 -1089 -1089 263 -1089 -1089 140 -62 -1089 -1089 -1089 184 -1089 33 -268 247 -164 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 5.3e-010 0.052632 0.000000 0.947368 0.000000 0.052632 0.947368 0.000000 0.000000 0.000000 0.000000 0.947368 0.052632 0.105263 0.894737 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.894737 0.105263 0.000000 0.000000 0.000000 0.578947 0.000000 0.421053 0.052632 0.894737 0.052632 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 regular expression -------------------------------------------------------------------------------- GCGCCA[CT]C -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCAGTGC MEME-2 width = 8 sites = 23 llr = 223 E-value = 2.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCAGTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C 3aa:3::7 probability G 7:::71a1 matrix T ::::19:2 bits 2.6 * 2.4 ** * 2.1 ** * 1.8 ** * Relative 1.6 **** * Entropy 1.3 ***** * (14.0 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCAGTGC consensus C C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCAGTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2193523-2193643 51 2.16e-06 TCGTTCTTGC GCCAGTGC AACACTGGCG chr2L:20061169-20061289 54 2.16e-06 CACAGGTCCT GCCAGTGC TGAATGGATT chr2L:13192027-13192147 8 2.16e-06 ACCAAAA GCCAGTGC TGTGCAATGA chr2L:3789509-3789629 67 4.29e-06 TATTATTTCT CCCAGTGC AAAGTGAGGG chr3R:14674947-14675067 93 4.29e-06 TGTATTTTTT CCCAGTGC ACAACTGGTA chr2R:18647162-18647282 112 6.41e-06 taatagtcga gccactgc a chr2L:8852367-8852487 106 8.49e-06 TTGAAACATT CCCACTGC CGCACTT chr3L:21604401-21604521 107 8.49e-06 ATAGATGCCG CCCACTGC GTGTAC chr3L:9442254-9442374 20 9.56e-06 ATCAAAATTG GCCAGGGC TGCAAGCGCT chr2L:14515792-14515912 48 1.18e-05 ATTTAAATGA GCCAGTGG TGTAAAGATT chr3L:12504157-12504277 66 1.62e-05 TTATCTCTCG GCCAGTGT GACCGTTCGA chrX:11925386-11925506 81 1.62e-05 CAATTTGTTA GCCAGTGT AAATTGGCCA chr3L:20242116-20242236 27 1.94e-05 TGACCAGAAA CCCAGTGG AAAATTGACG chrX:11629133-11629253 102 1.94e-05 TTCCTTTTCT CCCAGTGG CGTTTTGTGA chr3R:13999699-13999819 112 2.49e-05 TTCCGTTTCT CCCAGTGT A chr3L:14781633-14781753 30 3.14e-05 TATTGTTCAG GCCATTGC ATTTCTAAAA chrX:7332648-7332768 96 3.14e-05 AGCCCAAAAT GCCATTGC TTATGGTCTT chr3R:11613274-11613394 107 3.58e-05 TACAGAGGAC GCCACTGT AATTTA chr3R:20285821-20285941 102 3.58e-05 GCATAAGCTT GCCACtgt gttgtgcggc chrX:10832499-10832619 8 4.34e-05 TTACTCG GCCAGAGC GCCATCTAGC chr2L:855343-855463 94 4.34e-05 CAAAAGTTTC CCCACGGC TGGCAACGCC chr3R:6368234-6368354 14 4.34e-05 GAATGTCGTT GCCAGTCC GCTACTAAGG chrX:8601257-8601377 12 4.34e-05 AATGCGTTCA GGCAGTGC GTTTCATAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCAGTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2193523-2193643 2.2e-06 50_[+2]_62 chr2L:20061169-20061289 2.2e-06 53_[+2]_59 chr2L:13192027-13192147 2.2e-06 7_[+2]_105 chr2L:3789509-3789629 4.3e-06 66_[+2]_46 chr3R:14674947-14675067 4.3e-06 92_[+2]_20 chr2R:18647162-18647282 6.4e-06 111_[+2]_1 chr2L:8852367-8852487 8.5e-06 105_[+2]_7 chr3L:21604401-21604521 8.5e-06 106_[+2]_6 chr3L:9442254-9442374 9.6e-06 19_[+2]_93 chr2L:14515792-14515912 1.2e-05 47_[+2]_65 chr3L:12504157-12504277 1.6e-05 65_[+2]_47 chrX:11925386-11925506 1.6e-05 80_[+2]_32 chr3L:20242116-20242236 1.9e-05 26_[+2]_86 chrX:11629133-11629253 1.9e-05 101_[+2]_11 chr3R:13999699-13999819 2.5e-05 111_[+2]_1 chr3L:14781633-14781753 3.1e-05 29_[+2]_83 chrX:7332648-7332768 3.1e-05 95_[+2]_17 chr3R:11613274-11613394 3.6e-05 106_[+2]_6 chr3R:20285821-20285941 3.6e-05 101_[+2]_11 chrX:10832499-10832619 4.3e-05 7_[+2]_105 chr2L:855343-855463 4.3e-05 93_[+2]_19 chr3R:6368234-6368354 4.3e-05 13_[+2]_99 chrX:8601257-8601377 4.3e-05 11_[+2]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCAGTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCAGTGC width=8 seqs=23 chr2L:2193523-2193643 ( 51) GCCAGTGC 1 chr2L:20061169-20061289 ( 54) GCCAGTGC 1 chr2L:13192027-13192147 ( 8) GCCAGTGC 1 chr2L:3789509-3789629 ( 67) CCCAGTGC 1 chr3R:14674947-14675067 ( 93) CCCAGTGC 1 chr2R:18647162-18647282 ( 112) GCCACTGC 1 chr2L:8852367-8852487 ( 106) CCCACTGC 1 chr3L:21604401-21604521 ( 107) CCCACTGC 1 chr3L:9442254-9442374 ( 20) GCCAGGGC 1 chr2L:14515792-14515912 ( 48) GCCAGTGG 1 chr3L:12504157-12504277 ( 66) GCCAGTGT 1 chrX:11925386-11925506 ( 81) GCCAGTGT 1 chr3L:20242116-20242236 ( 27) CCCAGTGG 1 chrX:11629133-11629253 ( 102) CCCAGTGG 1 chr3R:13999699-13999819 ( 112) CCCAGTGT 1 chr3L:14781633-14781753 ( 30) GCCATTGC 1 chrX:7332648-7332768 ( 96) GCCATTGC 1 chr3R:11613274-11613394 ( 107) GCCACTGT 1 chr3R:20285821-20285941 ( 102) GCCACTGT 1 chrX:10832499-10832619 ( 8) GCCAGAGC 1 chr2L:855343-855463 ( 94) CCCACGGC 1 chr3R:6368234-6368354 ( 14) GCCAGTCC 1 chrX:8601257-8601377 ( 12) GGCAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCAGTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 2.3e-003 -1117 110 199 -1117 -1117 256 -192 -1117 -1117 263 -1117 -1117 156 -1117 -1117 -1117 -1117 69 199 -194 -296 -1117 -92 138 -1117 -189 254 -1117 -1117 201 -34 -62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCAGTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.3e-003 0.000000 0.347826 0.652174 0.000000 0.000000 0.956522 0.043478 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.260870 0.652174 0.086957 0.043478 0.000000 0.086957 0.869565 0.000000 0.043478 0.956522 0.000000 0.000000 0.652174 0.130435 0.217391 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCAGTGC MEME-2 regular expression -------------------------------------------------------------------------------- [GC]CCA[GC]TG[CT] -------------------------------------------------------------------------------- Time 13.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCGCC MEME-3 width = 8 sites = 17 llr = 171 E-value = 2.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 211::::: pos.-specific C 21::a:97 probability G 519a:a:2 matrix T :7::::11 bits 2.6 *** 2.4 *** 2.1 **** 1.8 ***** Relative 1.6 ***** Entropy 1.3 ****** (14.5 bits) 1.1 ****** 0.8 * ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGCGCC consensus A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13563524-13563644 59 1.06e-06 TGCACTAACC GTGGCGCC ACCTATGACG chr2R:14434339-14434459 77 1.06e-06 ATTACTGTAG GTGGCGCC TAACATTCAA chr2R:16800206-16800326 86 1.06e-06 TTTCGTATAG GTGGCGCC ACTTAAACTC chr2R:23652379-23652499 5 2.09e-06 AGTG CTGGCGCC ATCCAGCTTA chr2L:18693937-18694057 98 6.36e-06 GCGCATTTCA ATGGCGCC AAGCAAGTTT chr2L:2193523-2193643 63 8.43e-06 CAGTGCAACA CTGGCGCG AGCGGGACGG chr2L:8852367-8852487 74 9.48e-06 TGTTGTTTGT GCGGCGCG TCAACACTTG chr3R:11613274-11613394 66 1.27e-05 CTGAGCTGAA GTGGCGCT TTCGTTTATT chr3R:18021343-18021463 25 1.27e-05 TGAAAACTAG GTGGCGCT CGTACTTAAA chrX:1953042-1953162 106 1.48e-05 CCAGACATAG AGGGCGCC AGAGGTT chrX:17751827-17751947 101 1.48e-05 TCAAGAGTAG AGGGCGCC GCTTACTTTT chr3R:10494285-10494405 38 1.70e-05 TATCACTTGA GTAGCGCC TTTGTTCTAA chr2R:24539286-24539406 30 1.92e-05 TCAGTGGACA GTGGCGTC GATCGACGGA chr3R:21487901-21488021 82 2.14e-05 AGGCCGCCAG ATGGCGCG CATATGAGAT chr3L:11415414-11415534 14 2.56e-05 AACGTCACTC CAGGCGCC CGTTCGGATA chrX:10832499-10832619 21 2.99e-05 AGAGCGCCAT CTAGCGCC AGTACATATT chrX:11715442-11715562 63 3.62e-05 GCCAGCGACA GCGGCGTC GTGTCATTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13563524-13563644 1.1e-06 58_[+3]_54 chr2R:14434339-14434459 1.1e-06 76_[+3]_36 chr2R:16800206-16800326 1.1e-06 85_[+3]_27 chr2R:23652379-23652499 2.1e-06 4_[+3]_108 chr2L:18693937-18694057 6.4e-06 97_[+3]_15 chr2L:2193523-2193643 8.4e-06 62_[+3]_50 chr2L:8852367-8852487 9.5e-06 73_[+3]_39 chr3R:11613274-11613394 1.3e-05 65_[+3]_47 chr3R:18021343-18021463 1.3e-05 24_[+3]_88 chrX:1953042-1953162 1.5e-05 105_[+3]_7 chrX:17751827-17751947 1.5e-05 100_[+3]_12 chr3R:10494285-10494405 1.7e-05 37_[+3]_75 chr2R:24539286-24539406 1.9e-05 29_[+3]_83 chr3R:21487901-21488021 2.1e-05 81_[+3]_31 chr3L:11415414-11415534 2.6e-05 13_[+3]_99 chrX:10832499-10832619 3e-05 20_[+3]_92 chrX:11715442-11715562 3.6e-05 62_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCGCC width=8 seqs=17 chrX:13563524-13563644 ( 59) GTGGCGCC 1 chr2R:14434339-14434459 ( 77) GTGGCGCC 1 chr2R:16800206-16800326 ( 86) GTGGCGCC 1 chr2R:23652379-23652499 ( 5) CTGGCGCC 1 chr2L:18693937-18694057 ( 98) ATGGCGCC 1 chr2L:2193523-2193643 ( 63) CTGGCGCG 1 chr2L:8852367-8852487 ( 74) GCGGCGCG 1 chr3R:11613274-11613394 ( 66) GTGGCGCT 1 chr3R:18021343-18021463 ( 25) GTGGCGCT 1 chrX:1953042-1953162 ( 106) AGGGCGCC 1 chrX:17751827-17751947 ( 101) AGGGCGCC 1 chr3R:10494285-10494405 ( 38) GTAGCGCC 1 chr2R:24539286-24539406 ( 30) GTGGCGTC 1 chr3R:21487901-21488021 ( 82) ATGGCGCG 1 chr3L:11415414-11415534 ( 14) CAGGCGCC 1 chrX:10832499-10832619 ( 21) CTAGCGCC 1 chrX:11715442-11715562 ( 63) GCGGCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 2.1e+000 -52 54 168 -1073 -252 -46 -48 107 -152 -1073 242 -1073 -1073 -1073 260 -1073 -1073 263 -1073 -1073 -1073 -1073 260 -1073 -1073 245 -1073 -151 -1073 213 10 -151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.1e+000 0.235294 0.235294 0.529412 0.000000 0.058824 0.117647 0.117647 0.705882 0.117647 0.000000 0.882353 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.882353 0.000000 0.117647 0.000000 0.705882 0.176471 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCGCC MEME-3 regular expression -------------------------------------------------------------------------------- [GAC]TGGCGCC -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCDGCAC MEME-4 width = 8 sites = 14 llr = 141 E-value = 2.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::42:a: pos.-specific C 2:91:a:9 probability G 8a147::1 matrix T :::21::: bits 2.6 * * 2.4 ** * * 2.1 ** * * 1.8 *** * * Relative 1.6 *** *** Entropy 1.3 *** **** (14.6 bits) 1.1 *** **** 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel GGCAGCAC consensus C GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1953042-1953162 30 3.25e-06 TCAAAACAAA GGCAGCAC GCCATCTAGT chr2R:14624599-14624719 99 3.25e-06 AGTACGAAGT GGCAGCAC CGTTGTGCTT chr2L:21163547-21163667 49 3.25e-06 CTAACGCATT GGCAGCAC TGCCCACAAT chr2L:20061169-20061289 39 5.41e-06 TTAAGTTCAG GGCTGCAC AGGTCCTGCC chr2R:14284399-14284519 49 7.50e-06 CAGTGGGCTT GGCCGCAC AGGTAGAGCT chrX:10832499-10832619 102 1.18e-05 GTTTCCTGTT GGCGACAC CTACCGTTAA chr3R:14714590-14714710 5 1.18e-05 caag cgcagcac tagcagcaTT chr3R:29522258-29522378 17 1.18e-05 CCCGTCGATG GGCGACAC ACTGAAAAAA chr3L:11415414-11415534 45 1.39e-05 GAGGGCATCC CGCTGCAC TTGAAGAAAC chr2R:14342716-14342836 57 1.39e-05 TACTGACTGT CGCTGCAC GCGATCGACG chr2L:18693937-18694057 66 2.06e-05 TAAATTCGCG GGGGGCAC TAATATTAAA chr3R:5299132-5299252 54 2.06e-05 AGCGACACCT GGCGGCAG AATACCCTAG chr2R:12337689-12337809 67 2.06e-05 TGCCACATTA GGCAACAC TGCATTTCAC chr3L:9442254-9442374 51 2.38e-05 CATATCGGTT GGCGTCAC GGGAAAAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1953042-1953162 3.2e-06 29_[+4]_83 chr2R:14624599-14624719 3.2e-06 98_[+4]_14 chr2L:21163547-21163667 3.2e-06 48_[+4]_64 chr2L:20061169-20061289 5.4e-06 38_[+4]_74 chr2R:14284399-14284519 7.5e-06 48_[+4]_64 chrX:10832499-10832619 1.2e-05 101_[+4]_11 chr3R:14714590-14714710 1.2e-05 4_[+4]_108 chr3R:29522258-29522378 1.2e-05 16_[+4]_96 chr3L:11415414-11415534 1.4e-05 44_[+4]_68 chr2R:14342716-14342836 1.4e-05 56_[+4]_56 chr2L:18693937-18694057 2.1e-05 65_[+4]_47 chr3R:5299132-5299252 2.1e-05 53_[+4]_59 chr2R:12337689-12337809 2.1e-05 66_[+4]_46 chr3L:9442254-9442374 2.4e-05 50_[+4]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCDGCAC width=8 seqs=14 chrX:1953042-1953162 ( 30) GGCAGCAC 1 chr2R:14624599-14624719 ( 99) GGCAGCAC 1 chr2L:21163547-21163667 ( 49) GGCAGCAC 1 chr2L:20061169-20061289 ( 39) GGCTGCAC 1 chr2R:14284399-14284519 ( 49) GGCCGCAC 1 chrX:10832499-10832619 ( 102) GGCGACAC 1 chr3R:14714590-14714710 ( 5) CGCAGCAC 1 chr3R:29522258-29522378 ( 17) GGCGACAC 1 chr3L:11415414-11415534 ( 45) CGCTGCAC 1 chr2R:14342716-14342836 ( 57) CGCTGCAC 1 chr2L:18693937-18694057 ( 66) GGGGGCAC 1 chr3R:5299132-5299252 ( 54) GGCGGCAG 1 chr2R:12337689-12337809 ( 67) GGCAACAC 1 chr3L:9442254-9442374 ( 51) GGCGTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 2.2e+002 -1045 41 225 -1045 -1045 -1045 260 -1045 -1045 252 -120 -1045 8 -118 112 -64 -66 -1045 212 -223 -1045 263 -1045 -1045 156 -1045 -1045 -1045 -1045 252 -120 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.2e+002 0.000000 0.214286 0.785714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.357143 0.071429 0.357143 0.214286 0.214286 0.000000 0.714286 0.071429 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.928571 0.071429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCDGCAC MEME-4 regular expression -------------------------------------------------------------------------------- [GC]GC[AGT][GA]CAC -------------------------------------------------------------------------------- Time 26.09 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTGWRM MEME-5 width = 8 sites = 28 llr = 248 E-value = 5.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTGWRM MEME-5 Description -------------------------------------------------------------------------------- Simplified A :9:::556 pos.-specific C a:a::1:4 probability G :1::a15: matrix T :::a:3:: bits 2.6 * * * 2.4 * * * 2.1 * * * 1.8 * * * Relative 1.6 * *** Entropy 1.3 ***** (12.8 bits) 1.1 ***** ** 0.8 ***** ** 0.5 ***** ** 0.3 ***** ** 0.0 -------- Multilevel CACTGAAA consensus TGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGWRM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:526564-526684 45 4.43e-06 GATGTGAGTG CACTGAGC GAAAAGCCGC chr2R:23574855-23574975 26 4.43e-06 GATAAACGCT CACTGAGC GAAAATGTGT chrX:8774124-8774244 50 1.37e-05 CACGCAGTTG CACTGAGA GAAATCGAGA chr3R:16524195-16524315 34 1.37e-05 AAGTGGGAAA CACTGAGA AAAAAAATTG chr3R:31325156-31325276 11 1.37e-05 TTTTCTTCGA CACTGAGA GAAATGTTGA chr3L:350756-350876 19 1.37e-05 GGGGCAACTA CACTGAGA CAATTGTATT chr3R:16524783-16524903 112 1.81e-05 ATCCACGTTC CACTGTGC G chr3R:23735335-23735455 54 2.93e-05 TCTTGACCCA CACTGTGA ATTCATTGAT chr2R:18689599-18689719 5 3.38e-05 ATGT CACTGCGA ATTAACCCAA chr3L:15940913-15941033 6 6.18e-05 TAGTG CACTGAAA AATATCAGCA chr3R:14714590-14714710 24 6.18e-05 agcagcaTTA CACTGAAA CAACTGGTGC chr3R:14089009-14089129 48 6.18e-05 TATTTGAATG CACTGAAA AATTACTTTA chr2L:2885660-2885780 35 6.18e-05 TGAAAACCAA CACTGAAA ACTGCTTATG chr2R:20319521-20319641 26 6.18e-05 TTATTGTGCA CACTGAAA GAATAACGCG chrX:17713928-17714048 87 7.29e-05 CCATAGTGTC CACTGTAC TCTGTTAACC chr3R:20556386-20556506 91 7.29e-05 TACAAGTAAT CACTGTAC CTAGCGATTT chr3L:4016892-4017012 26 7.29e-05 CATAAACAGG CACTGTAC GGGGAGTACC chr2R:13261847-13261967 112 7.29e-05 AAATGTTACG CACTGTAC C chr2R:20062808-20062928 13 1.01e-04 AAGCCTCTTA CACTGGGA AAAAGTGGGC chr2R:19271492-19271612 90 1.01e-04 ACTTTTCTCT CACTGTAA AGATTATATC chr3R:18795465-18795585 14 1.01e-04 ACTTTTTGAT CACTGCAC AGATGTCCTT chr2L:6280391-6280511 64 1.01e-04 GGAGTAAGTA CACTGGGA GAAAAGGTTA chr3L:20823315-20823435 59 1.01e-04 ctgttgttta cactgtaa atgtataaag chrX:1953042-1953162 1 1.12e-04 . CACTGCAA TCGAAACGCC chr3R:20008801-20008921 110 1.12e-04 CCCTAGCAAT CGCTGAGC GAT chr2L:8746310-8746430 56 1.12e-04 GCTTCTGCTA CACTGCAA TTAAAACTCT chr2R:16800206-16800326 52 1.16e-04 AACTAGATGT CGCTGAGA AAAAAGCTCA chr3L:9442254-9442374 34 1.18e-04 GGGCTGCAAG CGCTGTGC ATATCGGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGWRM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:526564-526684 4.4e-06 44_[+5]_68 chr2R:23574855-23574975 4.4e-06 25_[+5]_87 chrX:8774124-8774244 1.4e-05 49_[+5]_63 chr3R:16524195-16524315 1.4e-05 33_[+5]_79 chr3R:31325156-31325276 1.4e-05 10_[+5]_102 chr3L:350756-350876 1.4e-05 18_[+5]_94 chr3R:16524783-16524903 1.8e-05 111_[+5]_1 chr3R:23735335-23735455 2.9e-05 53_[+5]_59 chr2R:18689599-18689719 3.4e-05 4_[+5]_108 chr3L:15940913-15941033 6.2e-05 5_[+5]_107 chr3R:14714590-14714710 6.2e-05 23_[+5]_89 chr3R:14089009-14089129 6.2e-05 47_[+5]_65 chr2L:2885660-2885780 6.2e-05 34_[+5]_78 chr2R:20319521-20319641 6.2e-05 25_[+5]_87 chrX:17713928-17714048 7.3e-05 86_[+5]_26 chr3R:20556386-20556506 7.3e-05 90_[+5]_22 chr3L:4016892-4017012 7.3e-05 25_[+5]_87 chr2R:13261847-13261967 7.3e-05 111_[+5]_1 chr2R:20062808-20062928 0.0001 12_[+5]_100 chr2R:19271492-19271612 0.0001 89_[+5]_23 chr3R:18795465-18795585 0.0001 13_[+5]_99 chr2L:6280391-6280511 0.0001 63_[+5]_49 chr3L:20823315-20823435 0.0001 58_[+5]_54 chrX:1953042-1953162 0.00011 [+5]_112 chr3R:20008801-20008921 0.00011 109_[+5]_3 chr2L:8746310-8746430 0.00011 55_[+5]_57 chr2R:16800206-16800326 0.00012 51_[+5]_61 chr3L:9442254-9442374 0.00012 33_[+5]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGWRM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTGWRM width=8 seqs=28 chrX:526564-526684 ( 45) CACTGAGC 1 chr2R:23574855-23574975 ( 26) CACTGAGC 1 chrX:8774124-8774244 ( 50) CACTGAGA 1 chr3R:16524195-16524315 ( 34) CACTGAGA 1 chr3R:31325156-31325276 ( 11) CACTGAGA 1 chr3L:350756-350876 ( 19) CACTGAGA 1 chr3R:16524783-16524903 ( 112) CACTGTGC 1 chr3R:23735335-23735455 ( 54) CACTGTGA 1 chr2R:18689599-18689719 ( 5) CACTGCGA 1 chr3L:15940913-15941033 ( 6) CACTGAAA 1 chr3R:14714590-14714710 ( 24) CACTGAAA 1 chr3R:14089009-14089129 ( 48) CACTGAAA 1 chr2L:2885660-2885780 ( 35) CACTGAAA 1 chr2R:20319521-20319641 ( 26) CACTGAAA 1 chrX:17713928-17714048 ( 87) CACTGTAC 1 chr3R:20556386-20556506 ( 91) CACTGTAC 1 chr3L:4016892-4017012 ( 26) CACTGTAC 1 chr2R:13261847-13261967 ( 112) CACTGTAC 1 chr2R:20062808-20062928 ( 13) CACTGGGA 1 chr2R:19271492-19271612 ( 90) CACTGTAA 1 chr3R:18795465-18795585 ( 14) CACTGCAC 1 chr2L:6280391-6280511 ( 64) CACTGGGA 1 chr3L:20823315-20823435 ( 59) CACTGTAA 1 chrX:1953042-1953162 ( 1) CACTGCAA 1 chr3R:20008801-20008921 ( 110) CGCTGAGC 1 chr2L:8746310-8746430 ( 56) CACTGCAA 1 chr2R:16800206-16800326 ( 52) CGCTGAGA 1 chr3L:9442254-9442374 ( 34) CGCTGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGWRM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5834 E= 5.7e+002 -1145 263 -1145 -1145 140 -1145 -62 -1145 -1145 263 -1145 -1145 -1145 -1145 -1145 158 -1145 -1145 260 -1145 46 -18 -120 -6 56 -1145 160 -1145 93 114 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGWRM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 5.7e+002 0.000000 1.000000 0.000000 0.000000 0.892857 0.000000 0.107143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.464286 0.142857 0.071429 0.321429 0.500000 0.000000 0.500000 0.000000 0.642857 0.357143 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGWRM MEME-5 regular expression -------------------------------------------------------------------------------- CACTG[AT][AG][AC] -------------------------------------------------------------------------------- Time 32.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:23512815-23512935 1.00e+00 120 chr2R:5128326-5128446 8.85e-01 120 chr2R:2262405-2262525 9.69e-01 120 chr2R:5122241-5122361 9.47e-02 120 chr3L:20823315-20823435 2.58e-01 120 chr2R:13261847-13261967 1.70e-02 111_[+5(7.29e-05)]_1 chr2R:7139402-7139522 9.96e-01 120 chr3L:9614056-9614176 3.18e-02 120 chr3L:12533790-12533910 1.00e+00 120 chr3R:5636949-5637069 6.67e-01 120 chr3L:11285288-11285408 9.98e-01 120 chr2R:11970303-11970423 6.06e-01 120 chr3R:24817127-24817247 1.00e+00 120 chr3R:29522258-29522378 3.06e-05 16_[+4(1.18e-05)]_96 chr2R:9935665-9935785 8.92e-01 120 chr3R:5660238-5660358 8.68e-01 120 chr2L:16703840-16703960 4.10e-03 120 chrX:8601257-8601377 3.22e-02 11_[+2(4.34e-05)]_101 chr2R:21018420-21018540 9.48e-01 120 chr2L:8746310-8746430 2.38e-02 120 chr3L:10784727-10784847 9.98e-01 120 chrX:11925386-11925506 5.32e-02 80_[+2(1.62e-05)]_32 chrX:11715442-11715562 8.64e-05 14_[+4(6.09e-05)]_40_[+3(3.62e-05)]_\ 50 chr3L:11785467-11785587 9.82e-01 120 chr2L:10698114-10698234 3.99e-01 120 chr3L:4262473-4262593 8.32e-01 120 chr3R:31252688-31252808 2.34e-01 120 chr2R:23574855-23574975 2.05e-02 25_[+5(4.43e-06)]_87 chr2L:15248725-15248845 2.00e-01 120 chr3L:1940959-1941079 3.58e-02 120 chr3L:12277446-12277566 6.83e-02 120 chr3L:11328363-11328483 6.92e-01 120 chr2R:19205410-19205530 6.90e-01 120 chr3L:3305652-3305772 3.53e-01 120 chr2L:14307591-14307711 1.01e-01 120 chr3R:13999699-13999819 8.60e-02 111_[+2(2.49e-05)]_1 chr3R:23293636-23293756 6.03e-02 120 chr3L:13911731-13911851 9.08e-01 120 chr3R:23735335-23735455 4.86e-03 53_[+5(2.93e-05)]_59 chrX:11629133-11629253 5.67e-03 101_[+2(1.94e-05)]_11 chr2R:16178629-16178749 3.47e-01 120 chr3R:20285821-20285941 1.67e-03 101_[+2(3.58e-05)]_11 chr3R:13779338-13779458 9.92e-01 120 chr2R:1513424-1513544 2.35e-02 120 chr3R:6760870-6760990 9.90e-01 120 chr3L:12050754-12050874 7.47e-01 120 chr3L:12504157-12504277 3.03e-03 65_[+2(1.62e-05)]_47 chr2R:1513187-1513307 4.58e-02 120 chr3R:16469702-16469822 1.66e-01 120 chr2R:23554514-23554634 1.30e-01 120 chr3L:20710600-20710720 6.14e-01 120 chr3L:10745706-10745826 9.96e-01 120 chr3L:13450319-13450439 3.68e-01 120 chr2L:7890701-7890821 5.80e-01 120 chr2R:20319521-20319641 7.62e-03 25_[+5(6.18e-05)]_87 chr3L:10344178-10344298 6.66e-01 120 chr3R:29748831-29748951 4.11e-05 9_[+1(1.63e-05)]_103 chr2L:10516853-10516973 3.14e-01 120 chr3L:5988898-5989018 5.67e-01 120 chr3L:12037900-12038020 9.73e-01 120 chr2L:7632894-7633014 2.11e-01 120 chr3L:21347352-21347472 9.76e-01 120 chr3L:14999685-14999805 6.14e-01 120 chr2L:8602733-8602853 9.86e-01 120 chr3L:3389707-3389827 3.72e-01 120 chr2R:21323887-21324007 1.57e-01 120 chr2L:6280391-6280511 2.95e-07 16_[+3(1.06e-06)]_96 chr3R:10494285-10494405 4.70e-02 37_[+3(1.70e-05)]_75 chr3L:563107-563227 7.54e-01 120 chr3R:11852123-11852243 5.90e-01 120 chr3L:16045418-16045538 3.70e-01 120 chr3R:26104370-26104490 3.36e-01 120 chrX:8777216-8777336 6.31e-01 120 chr2L:6357058-6357178 6.12e-01 120 chr3L:18003734-18003854 1.56e-01 120 chr3L:9442254-9442374 1.73e-06 19_[+2(9.56e-06)]_23_[+4(2.38e-05)]_\ 62 chr2R:16110252-16110372 7.17e-01 120 chr2R:16800206-16800326 7.81e-08 13_[+1(1.03e-06)]_64_[+3(1.06e-06)]_\ 27 chr3L:9129163-9129283 9.92e-01 120 chr3L:8072800-8072920 4.31e-01 120 chrX:11108322-11108442 2.56e-01 120 chr2R:12337689-12337809 8.80e-03 66_[+4(2.06e-05)]_46 chr2L:21624028-21624148 2.36e-01 120 chr3R:4387536-4387656 5.92e-01 120 chrX:4616936-4617056 9.36e-01 120 chr3L:1029691-1029811 8.13e-02 120 chr2L:10522587-10522707 9.96e-01 120 chr3L:15826524-15826644 8.51e-01 120 chr2L:21163547-21163667 5.60e-05 48_[+4(3.25e-06)]_64 chr2L:7258216-7258336 1.28e-06 42_[+1(7.85e-06)]_46_[+1(3.15e-06)]_\ 16 chr2L:5798141-5798261 2.47e-01 120 chr3R:25004894-25005014 3.53e-01 120 chr2L:6323505-6323625 7.36e-04 68_[+1(3.15e-06)]_44 chr2R:20067278-20067398 9.52e-01 120 chrX:526564-526684 1.42e-02 44_[+5(4.43e-06)]_68 chr2L:11453109-11453229 1.89e-01 120 chr2R:18647162-18647282 2.83e-03 111_[+2(6.41e-06)]_1 chr3R:18021343-18021463 2.54e-02 24_[+3(1.27e-05)]_88 chr3R:14674947-14675067 8.77e-03 92_[+2(4.29e-06)]_20 chr3R:20008801-20008921 9.55e-02 120 chr2L:7033465-7033585 1.41e-02 120 chr2R:13998487-13998607 9.08e-01 120 chr2L:8834948-8835068 1.50e-01 120 chr2R:23377114-23377234 8.81e-01 120 chr3R:9801076-9801196 9.09e-01 120 chrX:3007911-3008031 6.32e-01 120 chr2R:14771050-14771170 6.76e-01 120 chr3R:23212091-23212211 4.58e-01 120 chr3R:12369774-12369894 8.44e-01 120 chr2L:18666069-18666189 7.76e-02 120 chr3R:21671791-21671911 2.93e-01 120 chr3L:11261004-11261124 1.39e-01 120 chr3R:7151042-7151162 8.73e-02 120 chr2R:16608457-16608577 9.40e-03 120 chr2R:14624599-14624719 1.86e-06 12_[+1(3.15e-06)]_28_[+1(2.29e-05)]_\ 42_[+4(3.25e-06)]_14 chr3L:16087574-16087694 5.26e-01 120 chrX:17751827-17751947 3.37e-02 100_[+3(1.48e-05)]_12 chr3R:31169121-31169241 3.39e-01 120 chr3R:29894542-29894662 9.48e-01 120 chr2R:20838088-20838208 2.72e-01 120 chr2R:14434339-14434459 3.22e-07 15_[+1(2.29e-05)]_9_[+3(9.97e-05)]_\ 36_[+3(1.06e-06)]_36 chr2R:15201330-15201450 6.90e-01 120 chr2R:13990784-13990904 8.51e-01 120 chr3L:20242116-20242236 1.89e-02 26_[+2(1.94e-05)]_86 chr2L:2885660-2885780 6.04e-02 34_[+5(6.18e-05)]_78 chr3L:12813986-12814106 7.54e-01 120 chr2R:14284399-14284519 4.85e-04 48_[+4(7.50e-06)]_26_[+4(3.69e-05)]_\ 30 chr3R:31064796-31064916 3.83e-01 120 chr2L:2426633-2426753 6.98e-01 120 chr2R:14342716-14342836 1.14e-03 56_[+4(1.39e-05)]_56 chr3L:4016892-4017012 1.80e-03 25_[+5(7.29e-05)]_87 chr3R:11613274-11613394 4.19e-08 8_[+1(1.03e-06)]_49_[+3(1.27e-05)]_\ 33_[+2(3.58e-05)]_6 chr3L:12136802-12136922 3.59e-01 120 chrX:1953042-1953162 2.64e-10 13_[+1(4.20e-05)]_8_[+4(3.25e-06)]_\ 34_[+3(2.09e-06)]_26_[+3(1.48e-05)]_7 chr2R:23652379-23652499 9.67e-06 4_[+3(2.09e-06)]_34_[+1(1.03e-06)]_\ 66 chr3R:16524783-16524903 1.22e-03 111_[+5(1.81e-05)]_1 chr3R:5485327-5485447 7.75e-02 120 chr3R:5299132-5299252 1.47e-04 44_[+1(7.85e-06)]_1_[+4(2.06e-05)]_\ 59 chr2L:20075502-20075622 8.14e-01 120 chr2L:8860835-8860955 1.28e-01 120 chr3L:5869732-5869852 3.77e-02 120 chr3R:18795465-18795585 7.37e-02 120 chr3L:17476045-17476165 4.51e-01 120 chr3R:13425568-13425688 9.99e-01 120 chr3L:9034426-9034546 9.37e-01 120 chr3L:15533560-15533680 5.87e-01 120 chrX:2533958-2534078 1.57e-02 120 chr2L:10467012-10467132 8.96e-01 120 chr3R:8126400-8126520 5.24e-01 120 chr2R:11601052-11601172 5.53e-01 120 chr3R:21487901-21488021 5.20e-03 81_[+3(2.14e-05)]_31 chr3L:350756-350876 2.91e-02 18_[+5(1.37e-05)]_94 chr2L:11192763-11192883 5.43e-01 120 chr2R:18689599-18689719 4.93e-02 4_[+5(3.38e-05)]_108 chr3L:3952530-3952650 7.64e-01 120 chr3R:19623790-19623910 7.66e-01 120 chr3R:14089009-14089129 1.88e-03 8_[+1(1.63e-05)]_31_[+5(6.18e-05)]_\ 65 chr3L:7718627-7718747 9.89e-01 120 chr3R:22690345-22690465 4.20e-01 120 chr2L:18987528-18987648 1.00e+00 120 chr2L:16888312-16888432 7.11e-03 66_[+1(3.15e-06)]_46 chr2L:13515072-13515192 2.76e-01 120 chr3R:22597687-22597807 7.57e-01 120 chr2L:13192027-13192147 1.92e-02 7_[+2(2.16e-06)]_105 chr2L:6557511-6557631 1.93e-01 120 chr3R:17941181-17941301 9.58e-01 120 chr3R:16869323-16869443 1.60e-05 20_[+3(2.09e-06)]_92 chr3L:21604401-21604521 1.39e-05 44_[+1(1.63e-05)]_54_[+2(8.49e-06)]_\ 6 chr3R:31325156-31325276 7.64e-02 10_[+5(1.37e-05)]_102 chr3L:8315626-8315746 2.11e-01 120 chr2L:18693937-18694057 4.87e-05 65_[+4(2.06e-05)]_24_[+3(6.36e-06)]_\ 15 chr2R:17892949-17893069 8.92e-01 120 chr3R:20556386-20556506 1.84e-01 90_[+5(7.29e-05)]_22 chrX:13749575-13749695 9.96e-01 120 chr3R:6368234-6368354 1.87e-01 13_[+2(4.34e-05)]_99 chr3R:14714590-14714710 3.11e-03 4_[+4(1.18e-05)]_11_[+5(6.18e-05)]_\ 89 chr2L:3657376-3657496 5.32e-04 10_[+1(2.29e-05)]_90_[+3(9.97e-05)]_\ 4 chr3L:2806113-2806233 5.22e-01 120 chr3L:6217430-6217550 9.63e-01 120 chr3R:14714822-14714942 1.03e-01 120 chrX:1669354-1669474 9.78e-01 120 chr3L:13957345-13957465 9.50e-01 120 chr3R:18223553-18223673 9.50e-01 120 chrX:8114627-8114747 9.82e-01 120 chr2L:855343-855463 6.77e-03 93_[+2(4.34e-05)]_19 chr2L:10299936-10300056 9.99e-01 120 chr2R:14214916-14215036 3.02e-01 120 chrX:10857478-10857598 9.57e-01 120 chr3R:13454112-13454232 8.30e-01 120 chr2L:4045516-4045636 9.98e-01 120 chr3R:24557012-24557132 3.78e-02 64_[+1(1.63e-05)]_48 chr2L:20061169-20061289 4.21e-05 38_[+4(5.41e-06)]_7_[+2(2.16e-06)]_\ 59 chr2L:19014680-19014800 8.96e-01 120 chr2L:9498211-9498331 3.93e-01 120 chrX:5700290-5700410 7.08e-01 120 chr3L:4040452-4040572 2.55e-02 120 chr2R:19271492-19271612 2.47e-01 120 chr3L:21539573-21539693 9.40e-01 120 chr3R:20292612-20292732 1.00e+00 120 chr2L:8852367-8852487 4.60e-05 73_[+3(9.48e-06)]_24_[+2(8.49e-06)]_\ 7 chrX:7893827-7893947 1.24e-01 120 chr2L:16644036-16644156 6.20e-01 120 chr3L:15940913-15941033 3.55e-02 5_[+5(6.18e-05)]_107 chr3R:16524195-16524315 1.06e-02 33_[+5(1.37e-05)]_79 chr3L:21828316-21828436 1.00e+00 120 chr3R:22663239-22663359 9.98e-01 120 chrX:17713928-17714048 1.58e-02 86_[+5(7.29e-05)]_26 chr3R:18746077-18746197 9.99e-01 120 chr2L:10292282-10292402 7.44e-02 120 chr2L:14515792-14515912 2.60e-02 47_[+2(1.18e-05)]_65 chr2L:9633911-9634031 6.42e-01 120 chr3L:9023692-9023812 3.34e-01 120 chr3L:2537296-2537416 4.87e-01 120 chr2L:21846490-21846610 8.65e-02 120 chr2R:18694907-18695027 5.68e-01 120 chr3L:20452999-20453119 7.95e-01 120 chr3L:21464458-21464578 3.23e-01 120 chr3L:16986298-16986418 8.09e-01 120 chr2R:15308264-15308384 8.72e-01 120 chr3R:9054693-9054813 1.37e-01 120 chr2L:3789509-3789629 2.94e-03 66_[+2(4.29e-06)]_46 chr2R:20062808-20062928 1.92e-01 120 chr3L:8996307-8996427 3.42e-01 120 chrX:13563524-13563644 8.08e-07 25_[+1(1.03e-06)]_28_[+1(1.03e-06)]_\ 51 chr3L:9856594-9856714 1.66e-01 120 chr2R:22937505-22937625 4.93e-01 120 chr3L:7323475-7323595 7.99e-01 120 chr3L:2631522-2631642 9.97e-01 120 chr2L:8541984-8542104 5.05e-01 120 chr2R:21034027-21034147 5.84e-01 120 chrX:7335035-7335155 7.21e-01 120 chrX:20495981-20496101 9.40e-01 120 chr3R:26963799-26963919 1.43e-01 120 chr2R:24539286-24539406 1.80e-04 29_[+3(1.92e-05)]_83 chrX:7332648-7332768 2.06e-02 95_[+2(3.14e-05)]_17 chr2L:3827831-3827951 9.94e-01 120 chr3R:23714035-23714155 9.92e-01 120 chr2L:2193523-2193643 3.99e-06 50_[+2(2.16e-06)]_4_[+3(8.43e-06)]_\ 12_[+3(6.36e-05)]_30 chrX:8774124-8774244 1.49e-02 49_[+5(1.37e-05)]_63 chr3R:14478738-14478858 9.01e-01 120 chr3L:11415414-11415534 2.58e-05 13_[+3(2.56e-05)]_23_[+4(1.39e-05)]_\ 68 chrX:13323326-13323446 3.97e-02 120 chr3L:14781633-14781753 9.65e-02 29_[+2(3.14e-05)]_83 chr3R:22624906-22625026 1.09e-01 120 chr2L:19358115-19358235 4.82e-01 120 chr2R:9167565-9167685 1.36e-01 120 chr2L:18558237-18558357 1.26e-01 120 chr3L:2590594-2590714 2.36e-01 120 chrX:10832499-10832619 2.56e-08 13_[+1(3.15e-06)]_43_[+1(1.03e-06)]_\ 30_[+1(7.85e-06)]_10 chr2L:9133444-9133564 6.56e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************