******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG31365.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:9824369-9824489 1.0000 120 chr3R:11807770-11807890 1.0000 120 chrX:7925052-7925172 1.0000 120 chrX:10308105-10308225 1.0000 120 chrX:6104868-6104988 1.0000 120 chr2L:7315666-7315786 1.0000 120 chrX:6589352-6589472 1.0000 120 chr3L:17050829-17050949 1.0000 120 chr2L:2815812-2815932 1.0000 120 chrX:3899487-3899607 1.0000 120 chrX:7350111-7350231 1.0000 120 chr3R:11403038-11403158 1.0000 120 chrX:16565533-16565653 1.0000 120 chr3R:16304416-16304536 1.0000 120 chrX:21083392-21083512 1.0000 120 chrX:19278530-19278650 1.0000 120 chrX:12967443-12967563 1.0000 120 chrX:8634941-8635061 1.0000 120 chrX:4139163-4139283 1.0000 120 chrX:9046674-9046794 1.0000 120 chr3L:14357036-14357156 1.0000 120 chrX:11800017-11800137 1.0000 120 chr3R:23971160-23971280 1.0000 120 chrX:10261250-10261370 1.0000 120 chrX:17912648-17912768 1.0000 120 chr3R:18621328-18621448 1.0000 120 chr3R:21069862-21069982 1.0000 120 chrX:17924182-17924302 1.0000 120 chr3L:2228733-2228853 1.0000 120 chrX:12957729-12957849 1.0000 120 chrX:7522069-7522189 1.0000 120 chr2R:24857332-24857452 1.0000 120 chr3R:4705308-4705428 1.0000 120 chrX:7340800-7340920 1.0000 120 chrX:20252069-20252189 1.0000 120 chr2R:25075907-25076027 1.0000 120 chrX:2096505-2096625 1.0000 120 chr2L:2110515-2110635 1.0000 120 chr3R:4969336-4969456 1.0000 120 chrX:2102484-2102604 1.0000 120 chrX:13258181-13258301 1.0000 120 chr3R:27651836-27651956 1.0000 120 chrX:13277790-13277910 1.0000 120 chr2R:8052697-8052817 1.0000 120 chrX:5934050-5934170 1.0000 120 chrX:20251868-20251988 1.0000 120 chr3R:7549473-7549593 1.0000 120 chr2R:6169484-6169604 1.0000 120 chrX:11135979-11136099 1.0000 120 chr3R:21583229-21583349 1.0000 120 chrX:2106504-2106624 1.0000 120 chr2L:10721668-10721788 1.0000 120 chr3L:8652017-8652137 1.0000 120 chrX:6586056-6586176 1.0000 120 chrX:12626011-12626131 1.0000 120 chr3L:10427511-10427631 1.0000 120 chr2R:23614846-23614966 1.0000 120 chrX:10309161-10309281 1.0000 120 chr3L:2885729-2885849 1.0000 120 chrX:19498692-19498812 1.0000 120 chr3R:20154800-20154920 1.0000 120 chr3L:18460452-18460572 1.0000 120 chr2L:16198232-16198352 1.0000 120 chr3R:6010161-6010281 1.0000 120 chr3R:4969897-4970017 1.0000 120 chrX:10009942-10010062 1.0000 120 chr3R:28635660-28635780 1.0000 120 chr3L:15014478-15014598 1.0000 120 chr2R:8394498-8394618 1.0000 120 chr2R:17616552-17616672 1.0000 120 chr2L:13332876-13332996 1.0000 120 chrX:8492661-8492781 1.0000 120 chr2R:11710287-11710407 1.0000 120 chr3L:6764013-6764133 1.0000 120 chr3R:26103571-26103691 1.0000 120 chr2L:9731424-9731544 1.0000 120 chr3R:7041052-7041172 1.0000 120 chr3L:4554340-4554460 1.0000 120 chr3R:6819337-6819457 1.0000 120 chr3R:20464502-20464622 1.0000 120 chr2R:8051926-8052046 1.0000 120 chr3L:8160181-8160301 1.0000 120 chr3L:1034623-1034743 1.0000 120 chr2L:5003834-5003954 1.0000 120 chrX:11136188-11136308 1.0000 120 chr3R:20866371-20866491 1.0000 120 chrX:11123620-11123740 1.0000 120 chr2L:3095046-3095166 1.0000 120 chr2R:13043325-13043445 1.0000 120 chrX:11798667-11798787 1.0000 120 chr3R:30154007-30154127 1.0000 120 chr3R:12638069-12638189 1.0000 120 chr3R:17615245-17615365 1.0000 120 chr3R:17449532-17449652 1.0000 120 chrX:5613185-5613305 1.0000 120 chr3R:15774274-15774394 1.0000 120 chrX:11544505-11544625 1.0000 120 chr2R:14799623-14799743 1.0000 120 chr3R:7783436-7783556 1.0000 120 chr3R:16624730-16624850 1.0000 120 chrX:6035475-6035595 1.0000 120 chr2R:16142113-16142233 1.0000 120 chr3R:22397439-22397559 1.0000 120 chr2R:14799008-14799128 1.0000 120 chrX:12633336-12633456 1.0000 120 chr2R:15954918-15955038 1.0000 120 chrX:2108857-2108977 1.0000 120 chr3R:6780191-6780311 1.0000 120 chrX:11239174-11239294 1.0000 120 chr3R:6854402-6854522 1.0000 120 chr3R:17719365-17719485 1.0000 120 chrX:13421216-13421336 1.0000 120 chr3L:4092853-4092973 1.0000 120 chr3L:10285009-10285129 1.0000 120 chr3R:6870952-6871072 1.0000 120 chr2R:10195874-10195994 1.0000 120 chrX:12633958-12634078 1.0000 120 chrX:11108916-11109036 1.0000 120 chr2R:12613151-12613271 1.0000 120 chr3R:6388719-6388839 1.0000 120 chr3L:15079455-15079575 1.0000 120 chr3L:3252134-3252254 1.0000 120 chr3L:9820397-9820517 1.0000 120 chr2L:21324532-21324652 1.0000 120 chr2L:5004035-5004155 1.0000 120 chr3R:21808748-21808868 1.0000 120 chr2R:6166044-6166164 1.0000 120 chr3L:14674163-14674283 1.0000 120 chr2R:6171532-6171652 1.0000 120 chr3L:1593032-1593152 1.0000 120 chr3R:27608221-27608341 1.0000 120 chr2R:25076594-25076714 1.0000 120 chr3R:21179750-21179870 1.0000 120 chr3R:6768386-6768506 1.0000 120 chr3R:23013626-23013746 1.0000 120 chrX:7944415-7944535 1.0000 120 chr3R:6806830-6806950 1.0000 120 chr3R:31086500-31086620 1.0000 120 chrX:5992284-5992404 1.0000 120 chrX:1963231-1963351 1.0000 120 chr3R:21619874-21619994 1.0000 120 chrX:5524637-5524757 1.0000 120 chr2L:21340822-21340942 1.0000 120 chr3L:18026115-18026235 1.0000 120 chr2R:11790021-11790141 1.0000 120 chr3R:20634963-20635083 1.0000 120 chr2L:10299366-10299486 1.0000 120 chr3L:3766644-3766764 1.0000 120 chr3R:26535193-26535313 1.0000 120 chr3R:9868558-9868678 1.0000 120 chr2L:3108404-3108524 1.0000 120 chr3R:9328959-9329079 1.0000 120 chr3L:3766877-3766997 1.0000 120 chrX:3504471-3504591 1.0000 120 chr2L:20822120-20822240 1.0000 120 chr2R:17715201-17715321 1.0000 120 chr2R:6162425-6162545 1.0000 120 chrX:10010148-10010268 1.0000 120 chr3L:18088162-18088282 1.0000 120 chr2L:740159-740279 1.0000 120 chr2R:5982144-5982264 1.0000 120 chr3R:21406920-21407040 1.0000 120 chr3R:21112187-21112307 1.0000 120 chr2L:8485640-8485760 1.0000 120 chr2R:16607550-16607670 1.0000 120 chrX:16553081-16553201 1.0000 120 chr3R:6817317-6817437 1.0000 120 chrX:2146597-2146717 1.0000 120 chr2R:19414580-19414700 1.0000 120 chr2L:16049702-16049822 1.0000 120 chrX:16150782-16150902 1.0000 120 chr3L:8159119-8159239 1.0000 120 chr3R:21408515-21408635 1.0000 120 chr2L:4998128-4998248 1.0000 120 chr2L:745910-746030 1.0000 120 chrX:12947808-12947928 1.0000 120 chr3R:24046600-24046720 1.0000 120 chr3L:1940136-1940256 1.0000 120 chr2R:8542948-8543068 1.0000 120 chr2R:24337638-24337758 1.0000 120 chr2L:12520376-12520496 1.0000 120 chr3R:6908204-6908324 1.0000 120 chr3L:647323-647443 1.0000 120 chr3L:1188944-1189064 1.0000 120 chr2R:6152600-6152720 1.0000 120 chr3R:13714265-13714385 1.0000 120 chr2R:6190265-6190385 1.0000 120 chr3L:16884221-16884341 1.0000 120 chr3R:12638268-12638388 1.0000 120 chr3R:16305261-16305381 1.0000 120 chrX:11798871-11798991 1.0000 120 chr2R:23615049-23615169 1.0000 120 chr3R:20762639-20762759 1.0000 120 chr2R:6142345-6142465 1.0000 120 chrX:7066745-7066865 1.0000 120 chr3L:8028768-8028888 1.0000 120 chr3L:10281953-10282073 1.0000 120 chr3L:3789281-3789401 1.0000 120 chr3R:5034798-5034918 1.0000 120 chr3L:3769293-3769413 1.0000 120 chr3L:13845426-13845546 1.0000 120 chr2R:24684383-24684503 1.0000 120 chr2R:17436539-17436659 1.0000 120 chrX:9448582-9448702 1.0000 120 chr2L:8478097-8478217 1.0000 120 chr3L:139466-139586 1.0000 120 chr2L:10964591-10964711 1.0000 120 chr2L:7029200-7029320 1.0000 120 chr3R:31090120-31090240 1.0000 120 chr3R:16260506-16260626 1.0000 120 chr2L:22146300-22146420 1.0000 120 chrX:16693864-16693984 1.0000 120 chr2L:4821866-4821986 1.0000 120 chr2L:20106703-20106823 1.0000 120 chr3L:14671702-14671822 1.0000 120 chr3L:7654530-7654650 1.0000 120 chr3R:24585144-24585264 1.0000 120 chr3R:28597721-28597841 1.0000 120 chrX:13128376-13128496 1.0000 120 chr3R:10677654-10677774 1.0000 120 chrX:13284816-13284936 1.0000 120 chrX:2112781-2112901 1.0000 120 chr2L:19430398-19430518 1.0000 120 chr3R:29866868-29866988 1.0000 120 chr2R:17604642-17604762 1.0000 120 chr3R:21589952-21590072 1.0000 120 chrX:5613386-5613506 1.0000 120 chrX:658258-658378 1.0000 120 chrX:16420168-16420288 1.0000 120 chr3R:17231820-17231940 1.0000 120 chr2R:12140543-12140663 1.0000 120 chrX:13632696-13632816 1.0000 120 chr3L:3811216-3811336 1.0000 120 chr2R:23378369-23378489 1.0000 120 chr3R:8862721-8862841 1.0000 120 chr3L:7984791-7984911 1.0000 120 chr3L:16381615-16381735 1.0000 120 chr3L:12392886-12393006 1.0000 120 chr3L:4553515-4553635 1.0000 120 chr3R:23738086-23738206 1.0000 120 chr2R:15010809-15010929 1.0000 120 chr2L:14395202-14395322 1.0000 120 chr2L:13801297-13801417 1.0000 120 chr2L:10298489-10298609 1.0000 120 chr2L:4345811-4345931 1.0000 120 chr2R:15249524-15249644 1.0000 120 chr3L:1885508-1885628 1.0000 120 chrX:16217025-16217145 1.0000 120 chr2L:1987479-1987599 1.0000 120 chr2R:19728882-19729002 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG31365/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG31365.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.221 G 0.22 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.221 G 0.22 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACTGCTTG MEME-1 width = 8 sites = 132 llr = 1317 E-value = 1.9e-206 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a::::::1 pos.-specific C :a::a::1 probability G :::a:::7 matrix T ::a::aa2 bits 2.2 ** 2.0 * ** 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTGCTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10298489-10298609 87 1.45e-05 AGTACAGAAG ACTGCTTG AGTAATTCCA chr3L:16381615-16381735 64 1.45e-05 CTTTAGGTGC ACTGCTTG CATGTCCACA chr3R:17231820-17231940 27 1.45e-05 CATTAAATAC ACTGCTTG CCGATATGCC chr3R:21589952-21590072 19 1.45e-05 TGGTACTTGC ACTGCTTG CTCGCCCAAT chr2L:19430398-19430518 7 1.45e-05 GTTTAA ACTGCTTG CTTTCGCACA chr3R:10677654-10677774 76 1.45e-05 CTGCTTGACT ACTGCTTG GGACCAGTTT chr3R:24585144-24585264 37 1.45e-05 AATGCCACGC ACTGCTTG AGTGCTGTTA chr2L:20106703-20106823 26 1.45e-05 CGCAATAGGC ACTGCTTG CCAGTCCATA chr3R:16260506-16260626 81 1.45e-05 AGCAGTTTAC ACTGCTTG TCTAGTGGAT chr2L:10964591-10964711 55 1.45e-05 TAGTTCTTGG ACTGCTTG CAAAACATTT chr2L:8478097-8478217 78 1.45e-05 AGCAGTTTTG ACTGCTTG TGTCTGCGAA chr2R:17436539-17436659 48 1.45e-05 TGTGCATTGA ACTGCTTG CCCACTGCTT chr3L:13845426-13845546 72 1.45e-05 CAGCATTTGC ACTGCTTG AACCGATAAC chr3R:20762639-20762759 72 1.45e-05 CGATTAGTGC ACTGCTTG TGTTATCGAA chrX:11798871-11798991 75 1.45e-05 TTAGTTCGGA ACTGCTTG CTTCTCCATT chr3L:16884221-16884341 46 1.45e-05 GAAAAGCTTT ACTGCTTG ATAAGATTAG chr3R:13714265-13714385 108 1.45e-05 CGGATGTAGC ACTGCTTG GAAAA chr3R:6908204-6908324 20 1.45e-05 ATCTGCGTGA ACTGCTTG CGCGTCTGCT chr2R:24337638-24337758 87 1.45e-05 TATATGGTGC ACTGCTTG GGAAAGGTGA chr2R:8542948-8543068 31 1.45e-05 ATGCCATTCC Actgcttg ctgaatgcgg chrX:12947808-12947928 40 1.45e-05 TCGAAAGGCG ACTGCTTG CAAGCAGTGG chr2L:4998128-4998248 39 1.45e-05 GGTTCAATGG ACTGCTTG TGTCAGTTTG chr3R:21408515-21408635 92 1.45e-05 CAGTTGATGC ACTGCTTG CACATTGCGC chrX:16553081-16553201 28 1.45e-05 AACTGCTGCA ACTGCTTG ACTAACCGCG chr3R:21112187-21112307 34 1.45e-05 TTTGCCGTTA ACTGCTTG TTTTGTCATT chr2L:740159-740279 63 1.45e-05 ACAGAATCAG ACTGCTTG CCAGGTTAAG chr3L:18088162-18088282 29 1.45e-05 ATAACAGTAC ACTGCTTG CGTGAAGATG chr3R:9328959-9329079 69 1.45e-05 ACTGCTTTGC ACTGCTTG CCTAGTGATA chr2L:3108404-3108524 41 1.45e-05 GGCAACATTC ACTGCTTG GCCACACTGC chr3L:18026115-18026235 48 1.45e-05 AGTTTGTCGC ACTGCTTG CATGGAGCTT chr3R:31086500-31086620 23 1.45e-05 CCTCGCGTGC ACTGCTTG CTCGAGCAGA chrX:7944415-7944535 81 1.45e-05 agcaGGGTGC ACTGCTTG CTTTCCGCAA chr3R:6768386-6768506 75 1.45e-05 TGCATCGACA ACTGCTTG TCTGCCGTAG chr3R:21808748-21808868 13 1.45e-05 TTTGCTCCGC ACTGCTTG TCCTTGCTCT chr3L:3252134-3252254 28 1.45e-05 CAACGGTTGC ACTGCTTG TAAAAGCTTG chr3L:15079455-15079575 78 1.45e-05 CAAGCAGTGC ACTGCTTG CTTTCCCTCT chr2R:12613151-12613271 65 1.45e-05 AGCAAGTCGC ACTGCTTG CCCGAGAAAA chrX:11108916-11109036 75 1.45e-05 ATGTGCTGCT ACTGCTTG CCCTGCTTCC chr3R:6870952-6871072 91 1.45e-05 GCTTGCATGA ACTGCTTG AGACCTTGTT chr3L:10285009-10285129 38 1.45e-05 TGCACAGCGC ACTGCTTG AACTGCTTGT chrX:13421216-13421336 91 1.45e-05 TGTGCAGTTA ACTGCTTG CCTGTTACTA chrX:11239174-11239294 67 1.45e-05 TCTTTCGGCA ACTGCTTG CCGAACAGGG chrX:2108857-2108977 71 1.45e-05 GCGCGGGCAA ACTGCTTG CGCCAGGAGC chr2R:15954918-15955038 39 1.45e-05 CGCCCATTAA ACTGCTTG CCAAGCAGTG chr3R:22397439-22397559 72 1.45e-05 AAGAACGAGC ACTGCTTG CCGGTAAAGC chr2R:16142113-16142233 38 1.45e-05 ATCTGCATGC ACTGCTTG ACGTCAATCG chr3R:16624730-16624850 62 1.45e-05 AAATAGGTAC ACTGCTTG TTAAAATTCA chr3R:7783436-7783556 57 1.45e-05 AAACTTCTGG ACTGCTTG CGGTGCGACC chrX:11544505-11544625 85 1.45e-05 CATTCTTCGC ACTGCTTG GATTTCCTGA chr3R:12638069-12638189 37 1.45e-05 TCCTTTACGC ACTGCTTG GCAAGCAGTT chrX:11136188-11136308 55 1.45e-05 ATCGAACCCA ACTGCTTG TCGAGGTCGC chr2L:5003834-5003954 24 1.45e-05 TTTCTGGGGC ACTGCTTG CAGCAAAGGA chr3L:1034623-1034743 53 1.45e-05 TCTTCTTGCC ACTGCTTG TGCCACCAAA chr3R:26103571-26103691 92 1.45e-05 GTTCAAATCA ACTGCTTG CGTACTGCTT chr2R:11710287-11710407 65 1.45e-05 TGTCAAGTGC ACTGCTTG CTAAATAACA chr2L:13332876-13332996 60 1.45e-05 AGCTTTTCGC ACTGCTTG CTTGTCTTAA chr2R:17616552-17616672 56 1.45e-05 TGATTGGACC ACTGCTTG CTGCGGTGGT chr3L:15014478-15014598 70 1.45e-05 ACTGATTCGA ACTGCTTG AACTGCTTTT chrX:10009942-10010062 48 1.45e-05 CCGAATGTGA ACTGCTTG CCACAACACA chr3L:18460452-18460572 37 1.45e-05 AAAACTTAAA ACTGCTTG TTTCGCAAGC chrX:19498692-19498812 37 1.45e-05 CGCTCTGCAC ACTGCTTG CATTCAGCGC chr3L:8652017-8652137 67 1.45e-05 ACATACATGC ACTGCTTG CGAATACATA chr2L:10721668-10721788 81 1.45e-05 TGCACCATTG ACTGCTTG CTTTACTGCT chr3R:21583229-21583349 54 1.45e-05 AGGAGCTTGC ACTGCTTG AGTCGCGAAC chrX:11135979-11136099 51 1.45e-05 AGCAACTTCC ACTGCTTG CAGGAGGAGT chr2R:6169484-6169604 31 1.45e-05 TAGTTGATGC ACTGCTTG GATTAGGTGT chr3R:7549473-7549593 65 1.45e-05 GGTAACATGC ACTGCTTG CACTGCTTAC chrX:20251868-20251988 43 1.45e-05 TGGCCTATGC ACTGCTTG TTTCGATCGC chr3R:27651836-27651956 76 1.45e-05 CCAAACCAGC ACTGCTTG CACGTAACAG chr3R:4705308-4705428 49 1.45e-05 AACTGCTTTC ACTGCTTG TCAGGTTTCT chr2R:24857332-24857452 63 1.45e-05 CTGCTTTGGC ACTGCTTG CACTCTGCTT chrX:12957729-12957849 56 1.45e-05 TTTGCCGAAC ACTGCTTG CCAGCAACAA chrX:17924182-17924302 84 1.45e-05 ATAGTGCGAC ACTGCTTG CTTACTGAAA chr3R:18621328-18621448 58 1.45e-05 CACTACTTGC ACTGCTTG CACTGCTTGC chrX:17912648-17912768 59 1.45e-05 CTCGCACTGC ACTGCTTG CATCCAGTTT chrX:10261250-10261370 28 1.45e-05 CGCCCTtgca actgcttg ctgctctgct chr3R:23971160-23971280 61 1.45e-05 CTCTGCTTGC ACTGCTTG ACGACTGCCC chr3L:14357036-14357156 40 1.45e-05 CTTATCCTGC ACTGCTTG GCCGCACTGC chrX:9046674-9046794 68 1.45e-05 CTCCCTTGCA ACTGCTTG TGCGGCTTTT chrX:8634941-8635061 19 1.45e-05 TTCCAATTCG ACTGCTTG ACGAACAGCA chrX:19278530-19278650 60 1.45e-05 CAAGTAGTAA ACTGCTTG ACAAGCAGCA chrX:16565533-16565653 55 1.45e-05 TTTATGGTCA ACTGCTTG CCAAAAAAGA chrX:7350111-7350231 52 1.45e-05 CAAGTTCTTG ACTGCTTG TGAGCAGATG chr2L:2815812-2815932 83 1.45e-05 ACTGCTTGCA ACTGCTTG ATGGCGCCAA chr2L:7315666-7315786 43 1.45e-05 CACTGCTTGA ACTGCTTG CATACTGCTT chrX:6104868-6104988 64 1.45e-05 TACATTTCGC ACTGCTtg tctgtgtagg chrX:10308105-10308225 49 1.45e-05 AACCAAGTGT ACTGCTTG CGGGCGCACT chrX:7925052-7925172 73 1.45e-05 AACATGGACA ACTGCTTG AACAGACGAT chr3R:11807770-11807890 62 1.45e-05 ATATCAGCGC ACTGCTTG ACCCATTAAG chr3L:9824369-9824489 42 1.45e-05 TTTGGCGCTA ACTGCTTG CAAGCAGTCG chr3L:3811216-3811336 76 3.29e-05 TTTGCTTTGC ACTGCTTT CGCGTTATTT chr2L:7029200-7029320 96 3.29e-05 GATAAGTACT ACTGCTTT TAATCAGAAA chr3L:139466-139586 61 3.29e-05 CACGCGCGGC ACTGCTTT ATCGACGAGT chrX:3504471-3504591 30 3.29e-05 GAATGGGTGC ACTGCTTT GTTAATGTGA chr2L:21340822-21340942 37 3.29e-05 AAGGAAATCG ACTGCTTT AGCAAGCAGG chrX:5524637-5524757 30 3.29e-05 TCCTCGATGC ACTGCTTT GCCGACGACT chr3R:21619874-21619994 85 3.29e-05 ATTAAAATGC ACTGCTTT CCCAGTTGGC chr3L:14674163-14674283 42 3.29e-05 ATACATGAAC ACTGCTTT GTGGATGAGC chr2L:21324532-21324652 75 3.29e-05 TTGCTTCTAC ACTGCTTT TCCATTTCCC chr3R:6388719-6388839 80 3.29e-05 TCGGACGAAA ACTGCTTT TTCAATTTCG chr2R:10195874-10195994 27 3.29e-05 GCATGAGTGC ACTGCTTT ATCGACCCGC chr3L:4092853-4092973 19 3.29e-05 ATTTGAATAC ACTGCTTT ACCACGTAAG chr3R:17719365-17719485 63 3.29e-05 ATTACAGTAC ACTGCTTT CGACTTGCTG chr3R:15774274-15774394 66 3.29e-05 GCGTGGTCGA ACTGCTTT ATCGACGCTA chrX:11798667-11798787 15 3.29e-05 ACGACGATAC ACTGCTTT ATATTACCTG chr3R:20866371-20866491 77 3.29e-05 TCCGATTCGA ACTGCTTT GCCGACCTAC chr3L:8160181-8160301 77 3.29e-05 CTTCATCTGA ACTGCTTT ACACTAAGCC chr2R:8051926-8052046 66 3.29e-05 ACATAGGCGA ACTGCTTT AAAGTTTCCG chr3R:6010161-6010281 53 3.29e-05 CAGTAAAGGC ACTGCTTT ATCTAGCAGT chr2L:2110515-2110635 87 3.29e-05 TTGAGATATG ACTGCTTT TTAACTTCCA chrX:20252069-20252189 51 3.29e-05 TCAATGTCGA ACTGCTTT ATTTTATTCA chr2R:12140543-12140663 111 4.74e-05 TATACTCCAC ACTGCTTC CA chrX:16693864-16693984 72 4.74e-05 CCCTTTGTAA ACTGCTTC ATCAACCCCT chr3L:3789281-3789401 66 4.74e-05 TTTGCGAAGC ACTGCTTC AAGCAGTGCA chr3R:21179750-21179870 62 4.74e-05 TGCAGCTAAA ACTGCTTC ATCGGTTTGA chrX:11123620-11123740 84 4.74e-05 CTGCACGCAC ACTGCTTC GTTCTTCCTT chrX:8492661-8492781 40 4.74e-05 CAAGCAGTGT ACTGCTTC GCCGAAATGG chrX:12967443-12967563 54 4.74e-05 CGTTTGCTGC ACTGCTTC CAGAGCTTTT chrX:13284816-13284936 94 6.58e-05 AGTGGTGCAA ACTGCTTA CTGCTGCTAT chrX:9448582-9448702 79 6.58e-05 TCACATTAAC ACTGCTTA GCAAGCAGTC chr2L:12520376-12520496 18 6.58e-05 GGCTATGTAA ACTGCTTA GTCAAACCGC chr3R:26535193-26535313 38 6.58e-05 GCTTTGGCGC ACTGCTTA ACTTATGCTT chr2L:10299366-10299486 38 6.58e-05 TCTGTTTGTA ACTGCTTA GTTTGCAGTC chr3R:20634963-20635083 44 6.58e-05 ATAGTGATTC ACTGCTTA ACTGATTTAA chrX:1963231-1963351 22 6.58e-05 AAAAGTACGC ACTGCTTA AATATATTGC chrX:10309161-10309281 46 6.58e-05 AGCTCTCTGA ACTGCTTA CTCGTTCACC chr3L:10281953-10282073 72 8.02e-05 AGTGGTGGCC AGTGCTTG TAAAACTATG chrX:2106504-2106624 82 9.17e-05 TGCATATAGA CCTGCTTG TAATAGATTT chrX:13277790-13277910 53 1.03e-04 GACctgctgc gctgcttg ctgcgctgct chr2R:15249524-15249644 108 1.21e-04 AAGACAAGCG AGTGCTTT CAGTT chr3R:23013626-23013746 104 1.21e-04 AGCCGCAAGC AGTGCTTT CGAATTTGT chr2R:25076594-25076714 88 1.36e-04 GAAATTGAAA CCTGCTTT ACCGGCGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10298489-10298609 1.4e-05 86_[+1]_26 chr3L:16381615-16381735 1.4e-05 63_[+1]_49 chr3R:17231820-17231940 1.4e-05 26_[+1]_86 chr3R:21589952-21590072 1.4e-05 18_[+1]_94 chr2L:19430398-19430518 1.4e-05 6_[+1]_106 chr3R:10677654-10677774 1.4e-05 75_[+1]_37 chr3R:24585144-24585264 1.4e-05 36_[+1]_76 chr2L:20106703-20106823 1.4e-05 25_[+1]_87 chr3R:16260506-16260626 1.4e-05 80_[+1]_32 chr2L:10964591-10964711 1.4e-05 54_[+1]_58 chr2L:8478097-8478217 1.4e-05 77_[+1]_35 chr2R:17436539-17436659 1.4e-05 47_[+1]_65 chr3L:13845426-13845546 1.4e-05 71_[+1]_41 chr3R:20762639-20762759 1.4e-05 71_[+1]_41 chrX:11798871-11798991 1.4e-05 74_[+1]_38 chr3L:16884221-16884341 1.4e-05 45_[+1]_67 chr3R:13714265-13714385 1.4e-05 107_[+1]_5 chr3R:6908204-6908324 1.4e-05 19_[+1]_93 chr2R:24337638-24337758 1.4e-05 86_[+1]_26 chr2R:8542948-8543068 1.4e-05 30_[+1]_82 chrX:12947808-12947928 1.4e-05 39_[+1]_73 chr2L:4998128-4998248 1.4e-05 38_[+1]_74 chr3R:21408515-21408635 1.4e-05 91_[+1]_21 chrX:16553081-16553201 1.4e-05 27_[+1]_85 chr3R:21112187-21112307 1.4e-05 33_[+1]_79 chr2L:740159-740279 1.4e-05 62_[+1]_50 chr3L:18088162-18088282 1.4e-05 28_[+1]_84 chr3R:9328959-9329079 1.4e-05 68_[+1]_44 chr2L:3108404-3108524 1.4e-05 40_[+1]_72 chr3L:18026115-18026235 1.4e-05 47_[+1]_65 chr3R:31086500-31086620 1.4e-05 22_[+1]_90 chrX:7944415-7944535 1.4e-05 80_[+1]_32 chr3R:6768386-6768506 1.4e-05 74_[+1]_38 chr3R:21808748-21808868 1.4e-05 12_[+1]_100 chr3L:3252134-3252254 1.4e-05 27_[+1]_85 chr3L:15079455-15079575 1.4e-05 77_[+1]_35 chr2R:12613151-12613271 1.4e-05 64_[+1]_48 chrX:11108916-11109036 1.4e-05 74_[+1]_38 chr3R:6870952-6871072 1.4e-05 90_[+1]_22 chr3L:10285009-10285129 1.4e-05 37_[+1]_75 chrX:13421216-13421336 1.4e-05 90_[+1]_22 chrX:11239174-11239294 1.4e-05 66_[+1]_46 chrX:2108857-2108977 1.4e-05 70_[+1]_42 chr2R:15954918-15955038 1.4e-05 38_[+1]_74 chr3R:22397439-22397559 1.4e-05 71_[+1]_41 chr2R:16142113-16142233 1.4e-05 37_[+1]_75 chr3R:16624730-16624850 1.4e-05 61_[+1]_51 chr3R:7783436-7783556 1.4e-05 56_[+1]_56 chrX:11544505-11544625 1.4e-05 84_[+1]_28 chr3R:12638069-12638189 1.4e-05 36_[+1]_76 chrX:11136188-11136308 1.4e-05 54_[+1]_58 chr2L:5003834-5003954 1.4e-05 23_[+1]_89 chr3L:1034623-1034743 1.4e-05 52_[+1]_60 chr3R:26103571-26103691 1.4e-05 91_[+1]_21 chr2R:11710287-11710407 1.4e-05 64_[+1]_48 chr2L:13332876-13332996 1.4e-05 59_[+1]_53 chr2R:17616552-17616672 1.4e-05 55_[+1]_57 chr3L:15014478-15014598 1.4e-05 69_[+1]_43 chrX:10009942-10010062 1.4e-05 47_[+1]_65 chr3L:18460452-18460572 1.4e-05 36_[+1]_76 chrX:19498692-19498812 1.4e-05 36_[+1]_76 chr3L:8652017-8652137 1.4e-05 66_[+1]_46 chr2L:10721668-10721788 1.4e-05 80_[+1]_32 chr3R:21583229-21583349 1.4e-05 53_[+1]_59 chrX:11135979-11136099 1.4e-05 50_[+1]_62 chr2R:6169484-6169604 1.4e-05 30_[+1]_82 chr3R:7549473-7549593 1.4e-05 64_[+1]_48 chrX:20251868-20251988 1.4e-05 42_[+1]_70 chr3R:27651836-27651956 1.4e-05 75_[+1]_37 chr3R:4705308-4705428 1.4e-05 48_[+1]_64 chr2R:24857332-24857452 1.4e-05 62_[+1]_50 chrX:12957729-12957849 1.4e-05 55_[+1]_57 chrX:17924182-17924302 1.4e-05 83_[+1]_29 chr3R:18621328-18621448 1.4e-05 57_[+1]_55 chrX:17912648-17912768 1.4e-05 58_[+1]_54 chrX:10261250-10261370 1.4e-05 27_[+1]_85 chr3R:23971160-23971280 1.4e-05 60_[+1]_52 chr3L:14357036-14357156 1.4e-05 39_[+1]_73 chrX:9046674-9046794 1.4e-05 67_[+1]_45 chrX:8634941-8635061 1.4e-05 18_[+1]_94 chrX:19278530-19278650 1.4e-05 59_[+1]_53 chrX:16565533-16565653 1.4e-05 54_[+1]_58 chrX:7350111-7350231 1.4e-05 51_[+1]_61 chr2L:2815812-2815932 1.4e-05 82_[+1]_30 chr2L:7315666-7315786 1.4e-05 42_[+1]_70 chrX:6104868-6104988 1.4e-05 63_[+1]_49 chrX:10308105-10308225 1.4e-05 48_[+1]_64 chrX:7925052-7925172 1.4e-05 72_[+1]_40 chr3R:11807770-11807890 1.4e-05 61_[+1]_51 chr3L:9824369-9824489 1.4e-05 41_[+1]_71 chr3L:3811216-3811336 3.3e-05 75_[+1]_37 chr2L:7029200-7029320 3.3e-05 95_[+1]_17 chr3L:139466-139586 3.3e-05 60_[+1]_52 chrX:3504471-3504591 3.3e-05 29_[+1]_83 chr2L:21340822-21340942 3.3e-05 36_[+1]_76 chrX:5524637-5524757 3.3e-05 29_[+1]_83 chr3R:21619874-21619994 3.3e-05 84_[+1]_28 chr3L:14674163-14674283 3.3e-05 41_[+1]_71 chr2L:21324532-21324652 3.3e-05 74_[+1]_38 chr3R:6388719-6388839 3.3e-05 79_[+1]_33 chr2R:10195874-10195994 3.3e-05 26_[+1]_86 chr3L:4092853-4092973 3.3e-05 18_[+1]_94 chr3R:17719365-17719485 3.3e-05 62_[+1]_50 chr3R:15774274-15774394 3.3e-05 65_[+1]_47 chrX:11798667-11798787 3.3e-05 14_[+1]_98 chr3R:20866371-20866491 3.3e-05 76_[+1]_36 chr3L:8160181-8160301 3.3e-05 76_[+1]_36 chr2R:8051926-8052046 3.3e-05 65_[+1]_47 chr3R:6010161-6010281 3.3e-05 52_[+1]_60 chr2L:2110515-2110635 3.3e-05 86_[+1]_26 chrX:20252069-20252189 3.3e-05 50_[+1]_62 chr2R:12140543-12140663 4.7e-05 110_[+1]_2 chrX:16693864-16693984 4.7e-05 71_[+1]_41 chr3L:3789281-3789401 4.7e-05 65_[+1]_47 chr3R:21179750-21179870 4.7e-05 61_[+1]_51 chrX:11123620-11123740 4.7e-05 83_[+1]_29 chrX:8492661-8492781 4.7e-05 39_[+1]_73 chrX:12967443-12967563 4.7e-05 53_[+1]_59 chrX:13284816-13284936 6.6e-05 93_[+1]_19 chrX:9448582-9448702 6.6e-05 78_[+1]_34 chr2L:12520376-12520496 6.6e-05 17_[+1]_95 chr3R:26535193-26535313 6.6e-05 37_[+1]_75 chr2L:10299366-10299486 6.6e-05 37_[+1]_75 chr3R:20634963-20635083 6.6e-05 43_[+1]_69 chrX:1963231-1963351 6.6e-05 21_[+1]_91 chrX:10309161-10309281 6.6e-05 45_[+1]_67 chr3L:10281953-10282073 8e-05 71_[+1]_41 chrX:2106504-2106624 9.2e-05 81_[+1]_31 chrX:13277790-13277910 0.0001 52_[+1]_60 chr2R:15249524-15249644 0.00012 107_[+1]_5 chr3R:23013626-23013746 0.00012 103_[+1]_9 chr2R:25076594-25076714 0.00014 87_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTGCTTG width=8 seqs=132 chr2L:10298489-10298609 ( 87) ACTGCTTG 1 chr3L:16381615-16381735 ( 64) ACTGCTTG 1 chr3R:17231820-17231940 ( 27) ACTGCTTG 1 chr3R:21589952-21590072 ( 19) ACTGCTTG 1 chr2L:19430398-19430518 ( 7) ACTGCTTG 1 chr3R:10677654-10677774 ( 76) ACTGCTTG 1 chr3R:24585144-24585264 ( 37) ACTGCTTG 1 chr2L:20106703-20106823 ( 26) ACTGCTTG 1 chr3R:16260506-16260626 ( 81) ACTGCTTG 1 chr2L:10964591-10964711 ( 55) ACTGCTTG 1 chr2L:8478097-8478217 ( 78) ACTGCTTG 1 chr2R:17436539-17436659 ( 48) ACTGCTTG 1 chr3L:13845426-13845546 ( 72) ACTGCTTG 1 chr3R:20762639-20762759 ( 72) ACTGCTTG 1 chrX:11798871-11798991 ( 75) ACTGCTTG 1 chr3L:16884221-16884341 ( 46) ACTGCTTG 1 chr3R:13714265-13714385 ( 108) ACTGCTTG 1 chr3R:6908204-6908324 ( 20) ACTGCTTG 1 chr2R:24337638-24337758 ( 87) ACTGCTTG 1 chr2R:8542948-8543068 ( 31) ACTGCTTG 1 chrX:12947808-12947928 ( 40) ACTGCTTG 1 chr2L:4998128-4998248 ( 39) ACTGCTTG 1 chr3R:21408515-21408635 ( 92) ACTGCTTG 1 chrX:16553081-16553201 ( 28) ACTGCTTG 1 chr3R:21112187-21112307 ( 34) ACTGCTTG 1 chr2L:740159-740279 ( 63) ACTGCTTG 1 chr3L:18088162-18088282 ( 29) ACTGCTTG 1 chr3R:9328959-9329079 ( 69) ACTGCTTG 1 chr2L:3108404-3108524 ( 41) ACTGCTTG 1 chr3L:18026115-18026235 ( 48) ACTGCTTG 1 chr3R:31086500-31086620 ( 23) ACTGCTTG 1 chrX:7944415-7944535 ( 81) ACTGCTTG 1 chr3R:6768386-6768506 ( 75) ACTGCTTG 1 chr3R:21808748-21808868 ( 13) ACTGCTTG 1 chr3L:3252134-3252254 ( 28) ACTGCTTG 1 chr3L:15079455-15079575 ( 78) ACTGCTTG 1 chr2R:12613151-12613271 ( 65) ACTGCTTG 1 chrX:11108916-11109036 ( 75) ACTGCTTG 1 chr3R:6870952-6871072 ( 91) ACTGCTTG 1 chr3L:10285009-10285129 ( 38) ACTGCTTG 1 chrX:13421216-13421336 ( 91) ACTGCTTG 1 chrX:11239174-11239294 ( 67) ACTGCTTG 1 chrX:2108857-2108977 ( 71) ACTGCTTG 1 chr2R:15954918-15955038 ( 39) ACTGCTTG 1 chr3R:22397439-22397559 ( 72) ACTGCTTG 1 chr2R:16142113-16142233 ( 38) ACTGCTTG 1 chr3R:16624730-16624850 ( 62) ACTGCTTG 1 chr3R:7783436-7783556 ( 57) ACTGCTTG 1 chrX:11544505-11544625 ( 85) ACTGCTTG 1 chr3R:12638069-12638189 ( 37) ACTGCTTG 1 chrX:11136188-11136308 ( 55) ACTGCTTG 1 chr2L:5003834-5003954 ( 24) ACTGCTTG 1 chr3L:1034623-1034743 ( 53) ACTGCTTG 1 chr3R:26103571-26103691 ( 92) ACTGCTTG 1 chr2R:11710287-11710407 ( 65) ACTGCTTG 1 chr2L:13332876-13332996 ( 60) ACTGCTTG 1 chr2R:17616552-17616672 ( 56) ACTGCTTG 1 chr3L:15014478-15014598 ( 70) ACTGCTTG 1 chrX:10009942-10010062 ( 48) ACTGCTTG 1 chr3L:18460452-18460572 ( 37) ACTGCTTG 1 chrX:19498692-19498812 ( 37) ACTGCTTG 1 chr3L:8652017-8652137 ( 67) ACTGCTTG 1 chr2L:10721668-10721788 ( 81) ACTGCTTG 1 chr3R:21583229-21583349 ( 54) ACTGCTTG 1 chrX:11135979-11136099 ( 51) ACTGCTTG 1 chr2R:6169484-6169604 ( 31) ACTGCTTG 1 chr3R:7549473-7549593 ( 65) ACTGCTTG 1 chrX:20251868-20251988 ( 43) ACTGCTTG 1 chr3R:27651836-27651956 ( 76) ACTGCTTG 1 chr3R:4705308-4705428 ( 49) ACTGCTTG 1 chr2R:24857332-24857452 ( 63) ACTGCTTG 1 chrX:12957729-12957849 ( 56) ACTGCTTG 1 chrX:17924182-17924302 ( 84) ACTGCTTG 1 chr3R:18621328-18621448 ( 58) ACTGCTTG 1 chrX:17912648-17912768 ( 59) ACTGCTTG 1 chrX:10261250-10261370 ( 28) ACTGCTTG 1 chr3R:23971160-23971280 ( 61) ACTGCTTG 1 chr3L:14357036-14357156 ( 40) ACTGCTTG 1 chrX:9046674-9046794 ( 68) ACTGCTTG 1 chrX:8634941-8635061 ( 19) ACTGCTTG 1 chrX:19278530-19278650 ( 60) ACTGCTTG 1 chrX:16565533-16565653 ( 55) ACTGCTTG 1 chrX:7350111-7350231 ( 52) ACTGCTTG 1 chr2L:2815812-2815932 ( 83) ACTGCTTG 1 chr2L:7315666-7315786 ( 43) ACTGCTTG 1 chrX:6104868-6104988 ( 64) ACTGCTTG 1 chrX:10308105-10308225 ( 49) ACTGCTTG 1 chrX:7925052-7925172 ( 73) ACTGCTTG 1 chr3R:11807770-11807890 ( 62) ACTGCTTG 1 chr3L:9824369-9824489 ( 42) ACTGCTTG 1 chr3L:3811216-3811336 ( 76) ACTGCTTT 1 chr2L:7029200-7029320 ( 96) ACTGCTTT 1 chr3L:139466-139586 ( 61) ACTGCTTT 1 chrX:3504471-3504591 ( 30) ACTGCTTT 1 chr2L:21340822-21340942 ( 37) ACTGCTTT 1 chrX:5524637-5524757 ( 30) ACTGCTTT 1 chr3R:21619874-21619994 ( 85) ACTGCTTT 1 chr3L:14674163-14674283 ( 42) ACTGCTTT 1 chr2L:21324532-21324652 ( 75) ACTGCTTT 1 chr3R:6388719-6388839 ( 80) ACTGCTTT 1 chr2R:10195874-10195994 ( 27) ACTGCTTT 1 chr3L:4092853-4092973 ( 19) ACTGCTTT 1 chr3R:17719365-17719485 ( 63) ACTGCTTT 1 chr3R:15774274-15774394 ( 66) ACTGCTTT 1 chrX:11798667-11798787 ( 15) ACTGCTTT 1 chr3R:20866371-20866491 ( 77) ACTGCTTT 1 chr3L:8160181-8160301 ( 77) ACTGCTTT 1 chr2R:8051926-8052046 ( 66) ACTGCTTT 1 chr3R:6010161-6010281 ( 53) ACTGCTTT 1 chr2L:2110515-2110635 ( 87) ACTGCTTT 1 chrX:20252069-20252189 ( 51) ACTGCTTT 1 chr2R:12140543-12140663 ( 111) ACTGCTTC 1 chrX:16693864-16693984 ( 72) ACTGCTTC 1 chr3L:3789281-3789401 ( 66) ACTGCTTC 1 chr3R:21179750-21179870 ( 62) ACTGCTTC 1 chrX:11123620-11123740 ( 84) ACTGCTTC 1 chrX:8492661-8492781 ( 40) ACTGCTTC 1 chrX:12967443-12967563 ( 54) ACTGCTTC 1 chrX:13284816-13284936 ( 94) ACTGCTTA 1 chrX:9448582-9448702 ( 79) ACTGCTTA 1 chr2L:12520376-12520496 ( 18) ACTGCTTA 1 chr3R:26535193-26535313 ( 38) ACTGCTTA 1 chr2L:10299366-10299486 ( 38) ACTGCTTA 1 chr3R:20634963-20635083 ( 44) ACTGCTTA 1 chrX:1963231-1963351 ( 22) ACTGCTTA 1 chrX:10309161-10309281 ( 46) ACTGCTTA 1 chr3L:10281953-10282073 ( 72) AGTGCTTG 1 chrX:2106504-2106624 ( 82) CCTGCTTG 1 chrX:13277790-13277910 ( 53) GCTGCTTG 1 chr2R:15249524-15249644 ( 108) AGTGCTTT 1 chr3R:23013626-23013746 ( 104) AGTGCTTT 1 chr2R:25076594-25076714 ( 88) CCTGCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.77038 E= 1.9e-206 181 -387 -485 -1369 -1369 214 -327 -1369 -1369 -1369 -1369 183 -1369 -1369 219 -1369 -1369 218 -1369 -1369 -1369 -1369 -1369 183 -1369 -1369 -1369 183 -220 -206 168 -62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 132 E= 1.9e-206 0.977273 0.015152 0.007576 0.000000 0.000000 0.977273 0.022727 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.060606 0.053030 0.704545 0.181818 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGCTTG MEME-1 regular expression -------------------------------------------------------------------------------- ACTGCTTG -------------------------------------------------------------------------------- Time 9.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAGCAGT MEME-2 width = 8 sites = 114 llr = 1091 E-value = 1.1e-145 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2aa::a:: pos.-specific C 7:::a::: probability G :::a::a: matrix T 1::::::9 bits 2.2 ** * 2.0 ** * 1.7 ****** 1.5 ****** Relative 1.3 ******* Entropy 1.1 ******* (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGCAGT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10298489-10298609 72 1.44e-05 ATGTCTTTTG CAAGCAGT ACAGAAGACT chr3L:4553515-4553635 1 1.44e-05 . CAAGCAGT ACTAAACAAT chr2R:12140543-12140663 36 1.44e-05 GCGGCTAGTG CAAGCAGT CAACTTGCGG chr3R:17231820-17231940 52 1.44e-05 GCCCTCGCAG CAAGCAGT TCTTTAACGA chr2L:4821866-4821986 92 1.44e-05 acagcaacag caagcagT CCAGTCCAGG chr2L:22146300-22146420 38 1.44e-05 GTGTCAGAGA CAAGCAGT GGCCACGTGC chr3R:31090120-31090240 63 1.44e-05 AAGCTTCCCC CAAGCAGT TCGTTTAGAT chr2L:8478097-8478217 12 1.44e-05 TTTTTACTGA CAAGCAGT CGTCAAGGAG chrX:9448582-9448702 88 1.44e-05 CACTGCTTAG CAAGCAGT CGAACACGTG chr2R:24684383-24684503 85 1.44e-05 CCGGGTTGGG CAAGCAGT GTCGAAACAG chrX:12947808-12947928 83 1.44e-05 CTGCCCTATG CAAGCAGT TTGCCATCGA chr2L:16049702-16049822 74 1.44e-05 AAGGGGAAAT CAAGCAGT GGAAGGGGAA chr2R:19414580-19414700 15 1.44e-05 GGTCGCTTCA CAAGCAGT CGTGGCCGAG chrX:16553081-16553201 67 1.44e-05 CGCTGGCCAG CAAGCAGT GAAATAAGCA chr2R:16607550-16607670 64 1.44e-05 GAAATCGCAG CAAGCAGT GATTTGAGTG chr2L:740159-740279 18 1.44e-05 TGCACTGCTT CAAGCAGT TATATTCGTA chr3L:18088162-18088282 108 1.44e-05 AAACGCATGC CAAGCAGT TCAAA chr2L:20822120-20822240 77 1.44e-05 GAATGCGGCG CAAGCAGT ACGGATATGT chr3R:20634963-20635083 92 1.44e-05 GTTGAGTTGA CAAGCAGT GCAAAGTAAC chr3R:21619874-21619994 33 1.44e-05 TCGTAAATTG CAAGCAGT GCTACGTTTT chr3R:23013626-23013746 75 1.44e-05 TTAACATCCG CAAGCAGT GCGTGCGATA chr3R:6768386-6768506 28 1.44e-05 GATCCCTGGT CAAGCAGT TTTGCAAACG chr3R:27608221-27608341 46 1.44e-05 GGCGTCGTTG CAAGCAGT GTGTGCTAAC chr3L:1593032-1593152 43 1.44e-05 AAAGAGAGAG CAAGCAGT TGGTCTTGCA chr3L:9820397-9820517 73 1.44e-05 AGCTGGTGCA CAAGCAGT TCAACTCGCC chr3L:15079455-15079575 68 1.44e-05 GAGATCGCAT CAAGCAGT GCACTGCTTG chrX:12633958-12634078 21 1.44e-05 CAAGCAGGGC CAAGCAGT GCCTATGTGT chr3L:4092853-4092973 69 1.44e-05 TCAACCGTGG CAAGCAGT GCATAACCGC chr3R:6854402-6854522 14 1.44e-05 AGGACCGCTG CAAGCAGT GCATCCTGCT chr3R:6780191-6780311 4 1.44e-05 TCT CAAGCAGT TTCTAAACAA chrX:2108857-2108977 100 1.44e-05 TCAACCAGGT CAAGCAGT GCAGCAGTTC chr2R:15954918-15955038 48 1.44e-05 AACTGCTTGC CAAGCAGT GGTGATTAGT chrX:12633336-12633456 88 1.44e-05 GCATAAATTG CAAGCagt gtgagtgaga chr3R:17449532-17449652 33 1.44e-05 ATATCGACCT CAAGCAGT TCGTCTTTCA chr3R:12638069-12638189 46 1.44e-05 CACTGCTTGG CAAGCAGT TTACATGTAT chr3R:30154007-30154127 69 1.44e-05 GAAAGCAGTG CAAGCAGT TCGTACGCTG chr2L:3095046-3095166 26 1.44e-05 GTGCGTGCAG CAAGCAGT GCCAGAAAGC chrX:11123620-11123740 39 1.44e-05 GCCACTCCTG CAAGCAGT GCGGGGTGTG chr3L:1034623-1034743 16 1.44e-05 ACATCATCCG CAAGCAGT TCTCTTGCGT chr2R:8051926-8052046 84 1.44e-05 AAAGTTTCCG CAAGCAGT TGGGATTTAG chr3R:7041052-7041172 49 1.44e-05 CAGTGCCAAG CAAGCAGT GTGCCGTGGT chr2L:9731424-9731544 67 1.44e-05 AGTTCAAATT CAAGCAGT GTGTGCAAGG chr3L:6764013-6764133 51 1.44e-05 ACCTAAATTG CAAGCAGT TTTCAATGCT chrX:8492661-8492781 30 1.44e-05 GGCCAGCGTG CAAGCAGT GTACTGCTTC chr2R:8394498-8394618 61 1.44e-05 CTATCGAATG CAAGCAGT GCACTCGCTG chr3R:6010161-6010281 39 1.44e-05 ACCGCATTAG CAAGCAGT AAAGGCACTG chr2L:16198232-16198352 82 1.44e-05 CTTCAGCAAA CAAGCAGT GCTATAATTA chr3L:18460452-18460572 65 1.44e-05 TCGTGAACAA CAAGCAGT GCTGATAGTG chr3R:20154800-20154920 80 1.44e-05 CTGCAGCCAG CAAGCAGT GCAGTCAGCA chr3L:2885729-2885849 13 1.44e-05 CATGCACGTT CAAGCAGT GCACAATACG chrX:12626011-12626131 51 1.44e-05 AATCGCTTCG CAAGCAGT GGCAGCTAAA chrX:6586056-6586176 72 1.44e-05 ATTGGAGAAG CAAGCAGT GCAAGCAGTT chrX:2106504-2106624 65 1.44e-05 TACGTGAAAG CAAGCAGT GCATATAGAC chrX:5934050-5934170 47 1.44e-05 GTCAGTGTGG CAAGCAGT TTAATTGCTA chrX:13258181-13258301 16 1.44e-05 CTGCGCCCAG CAAGCAGT GGTCGATCTT chrX:2102484-2102604 69 1.44e-05 CGTCGAGCGG CAAGCAGT TCGTTTCATT chrX:2096505-2096625 73 1.44e-05 GACCACCATA CAAGCAGT GCATTGTCTT chrX:7340800-7340920 67 1.44e-05 TACTTGCCAT CAAGCAGT TCCTTAAAGT chrX:11800017-11800137 61 1.44e-05 GCAGTGCAGC CAAGCAGT CCAGCAGCCG chrX:4139163-4139283 104 1.44e-05 GTGAAAATTA CAAGCAGT TGGGCCAGG chrX:12967443-12967563 106 1.44e-05 AGCATTGTGA CAAGCAGT GCTTTTT chrX:21083392-21083512 65 1.44e-05 AGCAGTGCGC CAAGCAGT CCATTGCAGA chr3R:16304416-16304536 41 1.44e-05 GGTTGGCAAG CAAGCAGT GCACGCAGGC chrX:3899487-3899607 49 1.44e-05 TCAAGCAGTG CAAGCAGT GGAAGCAGTG chr3L:17050829-17050949 88 1.44e-05 AGCAGTACTT CAAGCAGT GTACCCAAGG chrX:6589352-6589472 49 1.44e-05 CAACCGCCGC CAAGCAGT TGTCAATATC chr3L:9824369-9824489 79 1.44e-05 GCCAAACACA CAAGCAGT ATATACCGCG chrX:16217025-16217145 77 3.25e-05 CCCAGTCGGC AAAGCAGT GCGAGGCAAG chr3L:7984791-7984911 23 3.25e-05 GCCAAAAAGG AAAGCAGT GCACATGCAT chrX:658258-658378 97 3.25e-05 ATTTTAGAAG AAAGCAGT AATTTTGTAA chr3R:16260506-16260626 69 3.25e-05 TCTGCTACAC AAAGCAGT TTACACTGCT chr3R:6908204-6908324 75 3.25e-05 AACACAATAT AAAGCAGT ACATCTAGAC chr3L:1940136-1940256 62 3.25e-05 AAAGCAGTTA AAAGCAGT TCGGCAAATG chr3R:24046600-24046720 63 3.25e-05 AGAAGGCGGC AAAGCAGT GCAGGGacac chr3R:21408515-21408635 30 3.25e-05 TGCTATCTCT AAAGCAGT TCTCTTGCTG chr3L:8159119-8159239 51 3.25e-05 GAACTAAGTT AAAGCAGT TAAAAGCTCT chrX:5992284-5992404 37 3.25e-05 AAAATCAAAG AAAGCAGT GCAGGTTTGC chr3L:14674163-14674283 78 3.25e-05 AGCTGTTAAG AAAGCAGT GCACTGTAAA chr2R:12613151-12613271 43 3.25e-05 ATTCGTTCGT AAAGCAGT GCGCAGCAAG chr2R:14799623-14799743 53 3.25e-05 AGCTGTCGGC AAAGCAGT TCAAAAACCA chrX:5613185-5613305 71 3.25e-05 ACATGAAAGT AAAGCAGT GCAAATGGCT chr3R:17615245-17615365 103 3.25e-05 CTGTGCTTAA AAAGCAGT CCACATGGCG chr2R:13043325-13043445 43 3.25e-05 TCAAACCAAT AAAGCAGT ATATTCTACT chr3R:6819337-6819457 88 3.25e-05 AAACCAGTTT AAAGCAGT ACACAAAACT chr3L:4554340-4554460 74 3.25e-05 TGTACGTTTT AAAGCAGT TAACCCTTTT chr2R:25075907-25076027 42 3.25e-05 GTATTGCGGT AAAGCAGT TTTTCTTGGC chrX:7522069-7522189 93 3.25e-05 GATGTACATC AAAGCAGT TCATGAAGTA chr3L:2228733-2228853 70 3.25e-05 ACAGCATGCG AAAGCAGT GCAAGCAAGT chr3R:11403038-11403158 40 3.25e-05 TGCATTTCGG AAAGCAGT AGACGAAGCA chr3L:1188944-1189064 55 5.07e-05 ACAAGCGGAG TAAGCAGT GTTCCAGACT chr2L:12520376-12520496 87 5.07e-05 GTTTGAAAAC TAAGCAGT AGTGCTGTAA chr2R:5982144-5982264 80 5.07e-05 GCACAAATTG TAAGCAGT GCAGAGAGTC chr2R:25076594-25076714 109 5.07e-05 GGCGTTCTAT TAAGCAGT TTAA chrX:11239174-11239294 85 5.07e-05 CCGAACAGGG TAAGCAGT GCATGCTAGG chr3R:11807770-11807890 76 5.07e-05 CTTGACCCAT TAAGCAGT GCGGCATTTT chr3L:8028768-8028888 38 7.64e-05 GTCAGCTGAT GAAGCAGT GGACAAAAGC chr3R:26535193-26535313 75 7.64e-05 ACGGCGGCGA CAAGCAGC CCGTTCGGCG chr2L:5004035-5004155 92 7.64e-05 GTTGGGCGGT CAAGCAGC AGAGTCGCGG chr2R:14799008-14799128 63 7.64e-05 cgtagcgaaa gaagcagt agcagtagaa chrX:10309161-10309281 74 7.64e-05 TGGAGAGCTT GAAGCAGT TTTAGCTAAC chrX:19278530-19278650 69 7.64e-05 AACTGCTTGA CAAGCAGC AAGTCGACTG chr3R:21112187-21112307 89 9.07e-05 ATACAAAAGC CAAGCAGA TCGTATTTAT chr2L:21340822-21340942 47 1.16e-04 ACTGCTTTAG CAAGCAGG ACTGCCTTAG chr3R:26103571-26103691 61 1.16e-04 TATCTGCGTA CAAGCAGG TCGCCACAAA chr3R:28635660-28635780 21 1.16e-04 GGCTTAAATT CTAGCAGT GATTGTAAAA chrX:17912648-17912768 12 1.16e-04 ATTGTGGCCA CTAGCAGT TTTCTTCCAG chr3R:24585144-24585264 70 1.39e-04 CGCTTAACAG CACGCAGT TAACAATGTG chr3R:22397439-22397559 89 1.39e-04 GCCGGTAAAG CAAGCGGT CCACGAAATG chr3L:7654530-7654650 62 1.82e-04 AGGGCCCAGC CAAGGAGT TTTTTGGCCA chrX:13421216-13421336 110 1.82e-04 CTGTTACTAA CATGCAGT AAA chr3R:20762639-20762759 37 2.19e-04 TGTTGCAAAA CAAGCAAT TTGCGTAGTT chr3R:16305261-16305381 81 2.19e-04 CCCAGACCGC AAAGCAGA GCTTTTGCTT chrX:16150782-16150902 30 2.19e-04 TTATTGGTCG AAAGCAGA ATGGATGGTT chr3L:3789281-3789401 31 2.51e-04 GAGCACAACA ATAGCAGT TTGAGAGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10298489-10298609 1.4e-05 71_[+2]_41 chr3L:4553515-4553635 1.4e-05 [+2]_112 chr2R:12140543-12140663 1.4e-05 35_[+2]_77 chr3R:17231820-17231940 1.4e-05 51_[+2]_61 chr2L:4821866-4821986 1.4e-05 91_[+2]_21 chr2L:22146300-22146420 1.4e-05 37_[+2]_75 chr3R:31090120-31090240 1.4e-05 62_[+2]_50 chr2L:8478097-8478217 1.4e-05 11_[+2]_101 chrX:9448582-9448702 1.4e-05 87_[+2]_25 chr2R:24684383-24684503 1.4e-05 84_[+2]_28 chrX:12947808-12947928 1.4e-05 82_[+2]_30 chr2L:16049702-16049822 1.4e-05 73_[+2]_39 chr2R:19414580-19414700 1.4e-05 14_[+2]_98 chrX:16553081-16553201 1.4e-05 66_[+2]_46 chr2R:16607550-16607670 1.4e-05 63_[+2]_49 chr2L:740159-740279 1.4e-05 17_[+2]_95 chr3L:18088162-18088282 1.4e-05 107_[+2]_5 chr2L:20822120-20822240 1.4e-05 76_[+2]_36 chr3R:20634963-20635083 1.4e-05 91_[+2]_21 chr3R:21619874-21619994 1.4e-05 32_[+2]_80 chr3R:23013626-23013746 1.4e-05 74_[+2]_38 chr3R:6768386-6768506 1.4e-05 27_[+2]_85 chr3R:27608221-27608341 1.4e-05 45_[+2]_67 chr3L:1593032-1593152 1.4e-05 42_[+2]_70 chr3L:9820397-9820517 1.4e-05 72_[+2]_40 chr3L:15079455-15079575 1.4e-05 67_[+2]_45 chrX:12633958-12634078 1.4e-05 20_[+2]_92 chr3L:4092853-4092973 1.4e-05 68_[+2]_44 chr3R:6854402-6854522 1.4e-05 13_[+2]_99 chr3R:6780191-6780311 1.4e-05 3_[+2]_109 chrX:2108857-2108977 1.4e-05 99_[+2]_13 chr2R:15954918-15955038 1.4e-05 47_[+2]_65 chrX:12633336-12633456 1.4e-05 87_[+2]_25 chr3R:17449532-17449652 1.4e-05 32_[+2]_80 chr3R:12638069-12638189 1.4e-05 45_[+2]_67 chr3R:30154007-30154127 1.4e-05 68_[+2]_44 chr2L:3095046-3095166 1.4e-05 25_[+2]_87 chrX:11123620-11123740 1.4e-05 38_[+2]_74 chr3L:1034623-1034743 1.4e-05 15_[+2]_97 chr2R:8051926-8052046 1.4e-05 83_[+2]_29 chr3R:7041052-7041172 1.4e-05 48_[+2]_64 chr2L:9731424-9731544 1.4e-05 66_[+2]_46 chr3L:6764013-6764133 1.4e-05 50_[+2]_62 chrX:8492661-8492781 1.4e-05 29_[+2]_83 chr2R:8394498-8394618 1.4e-05 60_[+2]_52 chr3R:6010161-6010281 1.4e-05 38_[+2]_74 chr2L:16198232-16198352 1.4e-05 81_[+2]_31 chr3L:18460452-18460572 1.4e-05 64_[+2]_48 chr3R:20154800-20154920 1.4e-05 79_[+2]_33 chr3L:2885729-2885849 1.4e-05 12_[+2]_100 chrX:12626011-12626131 1.4e-05 50_[+2]_62 chrX:6586056-6586176 1.4e-05 71_[+2]_41 chrX:2106504-2106624 1.4e-05 64_[+2]_48 chrX:5934050-5934170 1.4e-05 46_[+2]_66 chrX:13258181-13258301 1.4e-05 15_[+2]_97 chrX:2102484-2102604 1.4e-05 68_[+2]_44 chrX:2096505-2096625 1.4e-05 72_[+2]_40 chrX:7340800-7340920 1.4e-05 66_[+2]_46 chrX:11800017-11800137 1.4e-05 60_[+2]_52 chrX:4139163-4139283 1.4e-05 103_[+2]_9 chrX:12967443-12967563 1.4e-05 105_[+2]_7 chrX:21083392-21083512 1.4e-05 64_[+2]_48 chr3R:16304416-16304536 1.4e-05 40_[+2]_72 chrX:3899487-3899607 1.4e-05 48_[+2]_64 chr3L:17050829-17050949 1.4e-05 87_[+2]_25 chrX:6589352-6589472 1.4e-05 48_[+2]_64 chr3L:9824369-9824489 1.4e-05 78_[+2]_34 chrX:16217025-16217145 3.3e-05 76_[+2]_36 chr3L:7984791-7984911 3.3e-05 22_[+2]_90 chrX:658258-658378 3.3e-05 96_[+2]_16 chr3R:16260506-16260626 3.3e-05 68_[+2]_44 chr3R:6908204-6908324 3.3e-05 74_[+2]_38 chr3L:1940136-1940256 3.3e-05 61_[+2]_51 chr3R:24046600-24046720 3.3e-05 62_[+2]_50 chr3R:21408515-21408635 3.3e-05 29_[+2]_83 chr3L:8159119-8159239 3.3e-05 50_[+2]_62 chrX:5992284-5992404 3.3e-05 36_[+2]_76 chr3L:14674163-14674283 3.3e-05 77_[+2]_35 chr2R:12613151-12613271 3.3e-05 42_[+2]_70 chr2R:14799623-14799743 3.3e-05 52_[+2]_60 chrX:5613185-5613305 3.3e-05 70_[+2]_42 chr3R:17615245-17615365 3.3e-05 102_[+2]_10 chr2R:13043325-13043445 3.3e-05 42_[+2]_70 chr3R:6819337-6819457 3.3e-05 87_[+2]_25 chr3L:4554340-4554460 3.3e-05 73_[+2]_39 chr2R:25075907-25076027 3.3e-05 41_[+2]_71 chrX:7522069-7522189 3.3e-05 92_[+2]_20 chr3L:2228733-2228853 3.3e-05 69_[+2]_43 chr3R:11403038-11403158 3.3e-05 39_[+2]_73 chr3L:1188944-1189064 5.1e-05 54_[+2]_58 chr2L:12520376-12520496 5.1e-05 86_[+2]_26 chr2R:5982144-5982264 5.1e-05 79_[+2]_33 chr2R:25076594-25076714 5.1e-05 108_[+2]_4 chrX:11239174-11239294 5.1e-05 84_[+2]_28 chr3R:11807770-11807890 5.1e-05 75_[+2]_37 chr3L:8028768-8028888 7.6e-05 37_[+2]_75 chr3R:26535193-26535313 7.6e-05 74_[+2]_38 chr2L:5004035-5004155 7.6e-05 91_[+2]_21 chr2R:14799008-14799128 7.6e-05 62_[+2]_50 chrX:10309161-10309281 7.6e-05 73_[+2]_39 chrX:19278530-19278650 7.6e-05 68_[+2]_44 chr3R:21112187-21112307 9.1e-05 88_[+2]_24 chr2L:21340822-21340942 0.00012 46_[+2]_66 chr3R:26103571-26103691 0.00012 60_[+2]_52 chr3R:28635660-28635780 0.00012 20_[+2]_92 chrX:17912648-17912768 0.00012 11_[+2]_101 chr3R:24585144-24585264 0.00014 69_[+2]_43 chr3R:22397439-22397559 0.00014 88_[+2]_24 chr3L:7654530-7654650 0.00018 61_[+2]_51 chrX:13421216-13421336 0.00018 109_[+2]_3 chr3R:20762639-20762759 0.00022 36_[+2]_76 chr3R:16305261-16305381 0.00022 80_[+2]_32 chrX:16150782-16150902 0.00022 29_[+2]_83 chr3L:3789281-3789401 0.00025 30_[+2]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAGCAGT width=8 seqs=114 chr2L:10298489-10298609 ( 72) CAAGCAGT 1 chr3L:4553515-4553635 ( 1) CAAGCAGT 1 chr2R:12140543-12140663 ( 36) CAAGCAGT 1 chr3R:17231820-17231940 ( 52) CAAGCAGT 1 chr2L:4821866-4821986 ( 92) CAAGCAGT 1 chr2L:22146300-22146420 ( 38) CAAGCAGT 1 chr3R:31090120-31090240 ( 63) CAAGCAGT 1 chr2L:8478097-8478217 ( 12) CAAGCAGT 1 chrX:9448582-9448702 ( 88) CAAGCAGT 1 chr2R:24684383-24684503 ( 85) CAAGCAGT 1 chrX:12947808-12947928 ( 83) CAAGCAGT 1 chr2L:16049702-16049822 ( 74) CAAGCAGT 1 chr2R:19414580-19414700 ( 15) CAAGCAGT 1 chrX:16553081-16553201 ( 67) CAAGCAGT 1 chr2R:16607550-16607670 ( 64) CAAGCAGT 1 chr2L:740159-740279 ( 18) CAAGCAGT 1 chr3L:18088162-18088282 ( 108) CAAGCAGT 1 chr2L:20822120-20822240 ( 77) CAAGCAGT 1 chr3R:20634963-20635083 ( 92) CAAGCAGT 1 chr3R:21619874-21619994 ( 33) CAAGCAGT 1 chr3R:23013626-23013746 ( 75) CAAGCAGT 1 chr3R:6768386-6768506 ( 28) CAAGCAGT 1 chr3R:27608221-27608341 ( 46) CAAGCAGT 1 chr3L:1593032-1593152 ( 43) CAAGCAGT 1 chr3L:9820397-9820517 ( 73) CAAGCAGT 1 chr3L:15079455-15079575 ( 68) CAAGCAGT 1 chrX:12633958-12634078 ( 21) CAAGCAGT 1 chr3L:4092853-4092973 ( 69) CAAGCAGT 1 chr3R:6854402-6854522 ( 14) CAAGCAGT 1 chr3R:6780191-6780311 ( 4) CAAGCAGT 1 chrX:2108857-2108977 ( 100) CAAGCAGT 1 chr2R:15954918-15955038 ( 48) CAAGCAGT 1 chrX:12633336-12633456 ( 88) CAAGCAGT 1 chr3R:17449532-17449652 ( 33) CAAGCAGT 1 chr3R:12638069-12638189 ( 46) CAAGCAGT 1 chr3R:30154007-30154127 ( 69) CAAGCAGT 1 chr2L:3095046-3095166 ( 26) CAAGCAGT 1 chrX:11123620-11123740 ( 39) CAAGCAGT 1 chr3L:1034623-1034743 ( 16) CAAGCAGT 1 chr2R:8051926-8052046 ( 84) CAAGCAGT 1 chr3R:7041052-7041172 ( 49) CAAGCAGT 1 chr2L:9731424-9731544 ( 67) CAAGCAGT 1 chr3L:6764013-6764133 ( 51) CAAGCAGT 1 chrX:8492661-8492781 ( 30) CAAGCAGT 1 chr2R:8394498-8394618 ( 61) CAAGCAGT 1 chr3R:6010161-6010281 ( 39) CAAGCAGT 1 chr2L:16198232-16198352 ( 82) CAAGCAGT 1 chr3L:18460452-18460572 ( 65) CAAGCAGT 1 chr3R:20154800-20154920 ( 80) CAAGCAGT 1 chr3L:2885729-2885849 ( 13) CAAGCAGT 1 chrX:12626011-12626131 ( 51) CAAGCAGT 1 chrX:6586056-6586176 ( 72) CAAGCAGT 1 chrX:2106504-2106624 ( 65) CAAGCAGT 1 chrX:5934050-5934170 ( 47) CAAGCAGT 1 chrX:13258181-13258301 ( 16) CAAGCAGT 1 chrX:2102484-2102604 ( 69) CAAGCAGT 1 chrX:2096505-2096625 ( 73) CAAGCAGT 1 chrX:7340800-7340920 ( 67) CAAGCAGT 1 chrX:11800017-11800137 ( 61) CAAGCAGT 1 chrX:4139163-4139283 ( 104) CAAGCAGT 1 chrX:12967443-12967563 ( 106) CAAGCAGT 1 chrX:21083392-21083512 ( 65) CAAGCAGT 1 chr3R:16304416-16304536 ( 41) CAAGCAGT 1 chrX:3899487-3899607 ( 49) CAAGCAGT 1 chr3L:17050829-17050949 ( 88) CAAGCAGT 1 chrX:6589352-6589472 ( 49) CAAGCAGT 1 chr3L:9824369-9824489 ( 79) CAAGCAGT 1 chrX:16217025-16217145 ( 77) AAAGCAGT 1 chr3L:7984791-7984911 ( 23) AAAGCAGT 1 chrX:658258-658378 ( 97) AAAGCAGT 1 chr3R:16260506-16260626 ( 69) AAAGCAGT 1 chr3R:6908204-6908324 ( 75) AAAGCAGT 1 chr3L:1940136-1940256 ( 62) AAAGCAGT 1 chr3R:24046600-24046720 ( 63) AAAGCAGT 1 chr3R:21408515-21408635 ( 30) AAAGCAGT 1 chr3L:8159119-8159239 ( 51) AAAGCAGT 1 chrX:5992284-5992404 ( 37) AAAGCAGT 1 chr3L:14674163-14674283 ( 78) AAAGCAGT 1 chr2R:12613151-12613271 ( 43) AAAGCAGT 1 chr2R:14799623-14799743 ( 53) AAAGCAGT 1 chrX:5613185-5613305 ( 71) AAAGCAGT 1 chr3R:17615245-17615365 ( 103) AAAGCAGT 1 chr2R:13043325-13043445 ( 43) AAAGCAGT 1 chr3R:6819337-6819457 ( 88) AAAGCAGT 1 chr3L:4554340-4554460 ( 74) AAAGCAGT 1 chr2R:25075907-25076027 ( 42) AAAGCAGT 1 chrX:7522069-7522189 ( 93) AAAGCAGT 1 chr3L:2228733-2228853 ( 70) AAAGCAGT 1 chr3R:11403038-11403158 ( 40) AAAGCAGT 1 chr3L:1188944-1189064 ( 55) TAAGCAGT 1 chr2L:12520376-12520496 ( 87) TAAGCAGT 1 chr2R:5982144-5982264 ( 80) TAAGCAGT 1 chr2R:25076594-25076714 ( 109) TAAGCAGT 1 chrX:11239174-11239294 ( 85) TAAGCAGT 1 chr3R:11807770-11807890 ( 76) TAAGCAGT 1 chr3L:8028768-8028888 ( 38) GAAGCAGT 1 chr3R:26535193-26535313 ( 75) CAAGCAGC 1 chr2L:5004035-5004155 ( 92) CAAGCAGC 1 chr2R:14799008-14799128 ( 63) GAAGCAGT 1 chrX:10309161-10309281 ( 74) GAAGCAGT 1 chrX:19278530-19278650 ( 69) CAAGCAGC 1 chr3R:21112187-21112307 ( 89) CAAGCAGA 1 chr2L:21340822-21340942 ( 47) CAAGCAGG 1 chr3R:26103571-26103691 ( 61) CAAGCAGG 1 chr3R:28635660-28635780 ( 21) CTAGCAGT 1 chrX:17912648-17912768 ( 12) CTAGCAGT 1 chr3R:24585144-24585264 ( 70) CACGCAGT 1 chr3R:22397439-22397559 ( 89) CAAGCGGT 1 chr3L:7654530-7654650 ( 62) CAAGGAGT 1 chrX:13421216-13421336 ( 110) CATGCAGT 1 chr3R:20762639-20762759 ( 37) CAAGCAAT 1 chr3R:16305261-16305381 ( 81) AAAGCAGA 1 chrX:16150782-16150902 ( 30) AAAGCAGA 1 chr3L:3789281-3789401 ( 31) ATAGCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.57273 E= 1.1e-145 -35 167 -306 -241 180 -1348 -1348 -341 182 -465 -1348 -499 -1348 -1348 219 -1348 -1348 217 -464 -1348 183 -1348 -464 -1348 -499 -1348 217 -1348 -341 -307 -364 173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 114 E= 1.1e-145 0.219298 0.701754 0.026316 0.052632 0.973684 0.000000 0.000000 0.026316 0.982456 0.008772 0.000000 0.008772 0.000000 0.000000 1.000000 0.000000 0.000000 0.991228 0.008772 0.000000 0.991228 0.000000 0.008772 0.000000 0.008772 0.000000 0.991228 0.000000 0.026316 0.026316 0.017544 0.929825 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAGCAGT MEME-2 regular expression -------------------------------------------------------------------------------- [CA]AAGCAGT -------------------------------------------------------------------------------- Time 15.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTGCTT MEME-3 width = 8 sites = 65 llr = 605 E-value = 8.6e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 29:::::: pos.-specific C 6:a::a:: probability G :1::a::: matrix T 21:a::aa bits 2.2 * ** 2.0 * ** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******* (13.4 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTGCTT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16381615-16381735 105 1.45e-05 CTTATCAGCG CACTGCTT ACCTTACG chr3R:10677654-10677774 64 1.45e-05 AAATTTCCAG CACTGCTT GACTACTGCT chr2L:10964591-10964711 8 1.45e-05 TTCTCTT CACTGCTT ATATGGGTAA chr2R:17436539-17436659 58 1.45e-05 ACTGCTTGCC CACTGCTT CTGTTGCCGT chr2L:740159-740279 10 1.45e-05 TTTTCGTTG CACTGCTT CAAGCAGTTA chr3R:9328959-9329079 95 1.45e-05 TAACTAAAAC CACTGCTT TGGCGCCAAA chr2L:3108404-3108524 53 1.45e-05 TGCTTGGCCA CACTGCTT TGAAATGCTT chr3L:18026115-18026235 68 1.45e-05 TGGAGCTTTG CACTGCTT GCAATAAGTG chrX:11108916-11109036 24 1.45e-05 ACATGTTTTC CACTGCTT GCCGGCAATT chr3L:4092853-4092973 52 1.45e-05 GGAACCGTTT CACTGCTT CAACCGTGGC chrX:11544505-11544625 62 1.45e-05 CTGGGCAATG CACTGCTT GCACACATTC chr2R:11710287-11710407 40 1.45e-05 CTTACGCATG CACTGCTT GCCGTCGTGT chr2R:17616552-17616672 31 1.45e-05 CGCGTATATG CACTGCTT GCCATTCTGA chrX:19498692-19498812 62 1.45e-05 CGCGCGCCTG CACTGCTT GCATTCCAGG chr3L:8652017-8652137 98 1.45e-05 AATTAATATG CACTGCTT TATAACGTTA chr3R:7549473-7549593 73 1.45e-05 GCACTGCTTG CACTGCTT ACTTCTATCG chr2L:2110515-2110635 18 1.45e-05 TCCTTTCCTG CACTGCTT CCAAGGACAC chr2R:24857332-24857452 42 1.45e-05 CTAACCGGTT CACTGCTT CACCTGCTTT chrX:12957729-12957849 84 1.45e-05 GTTGTCGGCG CACTGCTT CTATGCCTTT chr3R:18621328-18621448 66 1.45e-05 GCACTGCTTG CACTGCTT GCCTCTTCGA chrX:17912648-17912768 35 1.45e-05 TCCAGTGTTC CACTGCTT GCACTTCTCG chr3L:14357036-14357156 52 1.45e-05 TGCTTGGCCG CACTGCTT CGCCCTCAGT chrX:9046674-9046794 44 1.45e-05 ACTGCTTACG CACTGCTT ACTCGACTCC chrX:8634941-8635061 35 1.45e-05 TGACGAACAG CACTGCTT GTGCTTTGAT chr2L:7315666-7315786 33 1.45e-05 CTCTAGCGAG CACTGCTT GAACTGCTTG chrX:6104868-6104988 35 1.45e-05 CTACGCGAGG CACTGCTT GCCATCACCG chrX:10308105-10308225 63 1.45e-05 CTTGCGGGCG CACTGCTT GGTCCGCTGT chrX:7925052-7925172 50 1.45e-05 GAGGATAACG CACTGCTT GCAACAACAT chr3L:13845426-13845546 49 3.29e-05 ATGAACCGTA AACTGCTT GCATTCAGCA chr3L:18088162-18088282 49 3.29e-05 TGAAGATGTT AACTGCTT TATTCGCACG chr3R:31086500-31086620 75 3.29e-05 AAACTCGAGG AACTGCTT TAATGCGCTC chr3L:3252134-3252254 87 3.29e-05 TCATTTATCG AACTGCTt taagtaaagt chr3R:6870952-6871072 77 3.29e-05 TACACGCGTT AACTGCTT GCATGAACTG chr3L:10285009-10285129 46 3.29e-05 GCACTGCTTG AACTGCTT GTTCTAACTT chrX:11123620-11123740 20 3.29e-05 TGCACAAGTT AACTGCTT CGCCACTCCT chr3L:15014478-15014598 78 3.29e-05 GAACTGCTTG AACTGCTT TTAAGCGCCA chrX:10009942-10010062 65 3.29e-05 GCCACAACAC AACTGCTT TACTAAGCTG chr3R:21583229-21583349 36 3.29e-05 ATCTTCACAA AACTGCTT AGGAGCTTGC chr3R:4705308-4705428 39 3.29e-05 CTAGAAATTC AACTGCTT TCACTGCTTG chrX:17924182-17924302 40 3.29e-05 AACAGCGATC AACTGCTT GCTAGCAACG chrX:16565533-16565653 25 3.29e-05 CGCAACTGGC AACTGCTT CGTGTCTACT chr2L:2815812-2815932 72 3.29e-05 TTAAAAGCGC AACTGCTT GCAACTGCTT chr3R:6908204-6908324 100 5.13e-05 GACTGCTTTT TACTGCTT TGCTTCGCTG chr2R:24337638-24337758 15 5.13e-05 TCGATAGGTA TACTGCTT GCTTAAAAGT chr2R:8542948-8543068 85 5.13e-05 tgctgctcct tactgctt agtgtttTCG chr2L:4998128-4998248 6 5.13e-05 ATTTG TACTGCTT ATCGGGGCTC chr3R:21619874-21619994 50 5.13e-05 TGCTACGTTT TACTGCTT TCCGAGTTGG chr3R:6768386-6768506 58 5.13e-05 ATTCACCACA TACTGCTT GCATCGACAA chr3R:26103571-26103691 102 5.13e-05 ACTGCTTGCG TACTGCTT GAGCCCGCGA chr2L:10721668-10721788 92 5.13e-05 CTGCTTGCTT TACTGCTT ATTAAAAGTC chrX:11135979-11136099 26 5.13e-05 TAACTCCGAG TACTGCTT GATGGACAGC chr3R:21408515-21408635 67 6.28e-05 GCAGTTGATG CGCTGCTT GTCGAAGCAG chrX:16553081-16553201 98 6.28e-05 GCAGCAGAAG CGCTGCTT AGTCCACAAG chr3L:1034623-1034743 88 6.28e-05 TTTTCACTCG CGCTGCTT TTGTTTTTCA chrX:13277790-13277910 64 6.28e-05 ctgcttgctg cgctgctt gccgttctgc chrX:3504471-3504591 91 7.74e-05 GTGCTTCTTC CTCTGCTT CGATTCCTCT chrX:10261250-10261370 39 7.74e-05 ctgcttgctg ctctgctt gcgactgcct chr3R:23971160-23971280 51 7.74e-05 CTCTTCTTCG CTCTGCTT GCACTGCTTG chrX:19278530-19278650 82 9.19e-05 GCAGCAAGTC GACTGCTT TAGAGATTGT chrX:7350111-7350231 29 9.19e-05 GCTTTCGGAG GACTGCTT GCACTCAAGT chr3R:20464502-20464622 104 1.03e-04 AGCTTTTTTA CACTGCCT TGAAAAGTT chrX:20251868-20251988 18 1.03e-04 CTGGGCGTGG CACTGCCT TATCGACTGG chr2L:20822120-20822240 102 1.32e-04 TGTTTGTGGA TGCTGCTT AGGTGTCTGC chr2L:1987479-1987599 12 1.62e-04 TGGCAAATGA CACTGCTG CATCTGCAAC chr3L:10281953-10282073 93 1.81e-04 AACTATGCGA TTCTGCTT AGGGCTAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16381615-16381735 1.5e-05 104_[+3]_8 chr3R:10677654-10677774 1.5e-05 63_[+3]_49 chr2L:10964591-10964711 1.5e-05 7_[+3]_105 chr2R:17436539-17436659 1.5e-05 57_[+3]_55 chr2L:740159-740279 1.5e-05 9_[+3]_103 chr3R:9328959-9329079 1.5e-05 94_[+3]_18 chr2L:3108404-3108524 1.5e-05 52_[+3]_60 chr3L:18026115-18026235 1.5e-05 67_[+3]_45 chrX:11108916-11109036 1.5e-05 23_[+3]_89 chr3L:4092853-4092973 1.5e-05 51_[+3]_61 chrX:11544505-11544625 1.5e-05 61_[+3]_51 chr2R:11710287-11710407 1.5e-05 39_[+3]_73 chr2R:17616552-17616672 1.5e-05 30_[+3]_82 chrX:19498692-19498812 1.5e-05 61_[+3]_51 chr3L:8652017-8652137 1.5e-05 97_[+3]_15 chr3R:7549473-7549593 1.5e-05 72_[+3]_40 chr2L:2110515-2110635 1.5e-05 17_[+3]_95 chr2R:24857332-24857452 1.5e-05 41_[+3]_71 chrX:12957729-12957849 1.5e-05 83_[+3]_29 chr3R:18621328-18621448 1.5e-05 65_[+3]_47 chrX:17912648-17912768 1.5e-05 34_[+3]_78 chr3L:14357036-14357156 1.5e-05 51_[+3]_61 chrX:9046674-9046794 1.5e-05 43_[+3]_69 chrX:8634941-8635061 1.5e-05 34_[+3]_78 chr2L:7315666-7315786 1.5e-05 32_[+3]_80 chrX:6104868-6104988 1.5e-05 34_[+3]_78 chrX:10308105-10308225 1.5e-05 62_[+3]_50 chrX:7925052-7925172 1.5e-05 49_[+3]_63 chr3L:13845426-13845546 3.3e-05 48_[+3]_64 chr3L:18088162-18088282 3.3e-05 48_[+3]_64 chr3R:31086500-31086620 3.3e-05 74_[+3]_38 chr3L:3252134-3252254 3.3e-05 86_[+3]_26 chr3R:6870952-6871072 3.3e-05 76_[+3]_36 chr3L:10285009-10285129 3.3e-05 45_[+3]_67 chrX:11123620-11123740 3.3e-05 19_[+3]_93 chr3L:15014478-15014598 3.3e-05 77_[+3]_35 chrX:10009942-10010062 3.3e-05 64_[+3]_48 chr3R:21583229-21583349 3.3e-05 35_[+3]_77 chr3R:4705308-4705428 3.3e-05 38_[+3]_74 chrX:17924182-17924302 3.3e-05 39_[+3]_73 chrX:16565533-16565653 3.3e-05 24_[+3]_88 chr2L:2815812-2815932 3.3e-05 71_[+3]_41 chr3R:6908204-6908324 5.1e-05 99_[+3]_13 chr2R:24337638-24337758 5.1e-05 14_[+3]_98 chr2R:8542948-8543068 5.1e-05 84_[+3]_28 chr2L:4998128-4998248 5.1e-05 5_[+3]_107 chr3R:21619874-21619994 5.1e-05 49_[+3]_63 chr3R:6768386-6768506 5.1e-05 57_[+3]_55 chr3R:26103571-26103691 5.1e-05 101_[+3]_11 chr2L:10721668-10721788 5.1e-05 91_[+3]_21 chrX:11135979-11136099 5.1e-05 25_[+3]_87 chr3R:21408515-21408635 6.3e-05 66_[+3]_46 chrX:16553081-16553201 6.3e-05 97_[+3]_15 chr3L:1034623-1034743 6.3e-05 87_[+3]_25 chrX:13277790-13277910 6.3e-05 63_[+3]_49 chrX:3504471-3504591 7.7e-05 90_[+3]_22 chrX:10261250-10261370 7.7e-05 38_[+3]_74 chr3R:23971160-23971280 7.7e-05 50_[+3]_62 chrX:19278530-19278650 9.2e-05 81_[+3]_31 chrX:7350111-7350231 9.2e-05 28_[+3]_84 chr3R:20464502-20464622 0.0001 103_[+3]_9 chrX:20251868-20251988 0.0001 17_[+3]_95 chr2L:20822120-20822240 0.00013 101_[+3]_11 chr2L:1987479-1987599 0.00016 11_[+3]_101 chr3L:10281953-10282073 0.00018 92_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTGCTT width=8 seqs=65 chr3L:16381615-16381735 ( 105) CACTGCTT 1 chr3R:10677654-10677774 ( 64) CACTGCTT 1 chr2L:10964591-10964711 ( 8) CACTGCTT 1 chr2R:17436539-17436659 ( 58) CACTGCTT 1 chr2L:740159-740279 ( 10) CACTGCTT 1 chr3R:9328959-9329079 ( 95) CACTGCTT 1 chr2L:3108404-3108524 ( 53) CACTGCTT 1 chr3L:18026115-18026235 ( 68) CACTGCTT 1 chrX:11108916-11109036 ( 24) CACTGCTT 1 chr3L:4092853-4092973 ( 52) CACTGCTT 1 chrX:11544505-11544625 ( 62) CACTGCTT 1 chr2R:11710287-11710407 ( 40) CACTGCTT 1 chr2R:17616552-17616672 ( 31) CACTGCTT 1 chrX:19498692-19498812 ( 62) CACTGCTT 1 chr3L:8652017-8652137 ( 98) CACTGCTT 1 chr3R:7549473-7549593 ( 73) CACTGCTT 1 chr2L:2110515-2110635 ( 18) CACTGCTT 1 chr2R:24857332-24857452 ( 42) CACTGCTT 1 chrX:12957729-12957849 ( 84) CACTGCTT 1 chr3R:18621328-18621448 ( 66) CACTGCTT 1 chrX:17912648-17912768 ( 35) CACTGCTT 1 chr3L:14357036-14357156 ( 52) CACTGCTT 1 chrX:9046674-9046794 ( 44) CACTGCTT 1 chrX:8634941-8635061 ( 35) CACTGCTT 1 chr2L:7315666-7315786 ( 33) CACTGCTT 1 chrX:6104868-6104988 ( 35) CACTGCTT 1 chrX:10308105-10308225 ( 63) CACTGCTT 1 chrX:7925052-7925172 ( 50) CACTGCTT 1 chr3L:13845426-13845546 ( 49) AACTGCTT 1 chr3L:18088162-18088282 ( 49) AACTGCTT 1 chr3R:31086500-31086620 ( 75) AACTGCTT 1 chr3L:3252134-3252254 ( 87) AACTGCTT 1 chr3R:6870952-6871072 ( 77) AACTGCTT 1 chr3L:10285009-10285129 ( 46) AACTGCTT 1 chrX:11123620-11123740 ( 20) AACTGCTT 1 chr3L:15014478-15014598 ( 78) AACTGCTT 1 chrX:10009942-10010062 ( 65) AACTGCTT 1 chr3R:21583229-21583349 ( 36) AACTGCTT 1 chr3R:4705308-4705428 ( 39) AACTGCTT 1 chrX:17924182-17924302 ( 40) AACTGCTT 1 chrX:16565533-16565653 ( 25) AACTGCTT 1 chr2L:2815812-2815932 ( 72) AACTGCTT 1 chr3R:6908204-6908324 ( 100) TACTGCTT 1 chr2R:24337638-24337758 ( 15) TACTGCTT 1 chr2R:8542948-8543068 ( 85) TACTGCTT 1 chr2L:4998128-4998248 ( 6) TACTGCTT 1 chr3R:21619874-21619994 ( 50) TACTGCTT 1 chr3R:6768386-6768506 ( 58) TACTGCTT 1 chr3R:26103571-26103691 ( 102) TACTGCTT 1 chr2L:10721668-10721788 ( 92) TACTGCTT 1 chrX:11135979-11136099 ( 26) TACTGCTT 1 chr3R:21408515-21408635 ( 67) CGCTGCTT 1 chrX:16553081-16553201 ( 98) CGCTGCTT 1 chr3L:1034623-1034743 ( 88) CGCTGCTT 1 chrX:13277790-13277910 ( 64) CGCTGCTT 1 chrX:3504471-3504591 ( 91) CTCTGCTT 1 chrX:10261250-10261370 ( 39) CTCTGCTT 1 chr3R:23971160-23971280 ( 51) CTCTGCTT 1 chrX:19278530-19278650 ( 82) GACTGCTT 1 chrX:7350111-7350231 ( 29) GACTGCTT 1 chr3R:20464502-20464622 ( 104) CACTGCCT 1 chrX:20251868-20251988 ( 18) CACTGCCT 1 chr2L:20822120-20822240 ( 102) TGCTGCTT 1 chr2L:1987479-1987599 ( 12) CACTGCTG 1 chr3L:10281953-10282073 ( 93) TTCTGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.51346 E= 8.6e-050 -37 140 -283 -73 163 -1267 -151 -219 -1267 218 -1267 -1267 -1267 -1267 -1267 183 -1267 -1267 219 -1267 -1267 218 -1267 -1267 -1267 -284 -1267 179 -1267 -1267 -383 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 8.6e-050 0.215385 0.584615 0.030769 0.169231 0.861538 0.000000 0.076923 0.061538 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.030769 0.000000 0.969231 0.000000 0.000000 0.015385 0.984615 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCTT MEME-3 regular expression -------------------------------------------------------------------------------- [CA]ACTGCTT -------------------------------------------------------------------------------- Time 21.24 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGCAGTK MEME-4 width = 8 sites = 42 llr = 404 E-value = 2.0e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGCAGTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa::a::: pos.-specific C :::a:::1 probability G ::a::a16 matrix T ::::::93 bits 2.2 ** * 2.0 ** * 1.7 ****** 1.5 ****** Relative 1.3 ******* Entropy 1.1 ******* (13.9 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGCAGTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8478097-8478217 36 1.43e-05 GGAGTTAACT AAGCAGTG CATCTCAACA chr3L:3789281-3789401 74 1.43e-05 GCACTGCTTC AAGCAGTG CAATATTTAC chrX:12947808-12947928 49 1.43e-05 GACTGCTTGC AAGCAGTG GCCTCTCATA chr2L:16049702-16049822 54 1.43e-05 CTCTTAGGCA AAGCAGTG GGAAGGGGAA chr3L:1593032-1593152 82 1.43e-05 AAAGAAGTTA AAGCAGTG CATCTGCAAC chr3R:17449532-17449652 14 1.43e-05 CGTTACTTGA AAGCAGTG CATATCGACC chr3R:30154007-30154127 61 1.43e-05 TTCCAAACGA AAGCAGTG CAAGCAGTTC chr2R:8051926-8052046 24 1.43e-05 TAACATCGTC AAGCAGTG CCCTAACAGT chr3R:6819337-6819457 69 1.43e-05 GTTTTGTGCA AAGCAGTG CAAACCAGTT chr3R:7041052-7041172 36 1.43e-05 ATTCCCGGAC AAGCAGTG CCAAGCAAGC chrX:2106504-2106624 34 1.43e-05 GATTTGGTGC AAGCAGTG CACAGTTTCC chrX:5934050-5934170 75 1.43e-05 CAAGGACGCA AAGCAGTG CAAACAGCTT chrX:2096505-2096625 56 1.43e-05 acgcacacgc aAGCAGTG ACCACCATAC chrX:11800017-11800137 49 1.43e-05 CTCTAAGCGC AAGCAGTG CAGCCAAGCA chrX:4139163-4139283 44 1.43e-05 AAGGTCGTTT AAGCAGTG TGCGTCGTCG chrX:12967443-12967563 77 1.43e-05 CTTTTGGCAT AAGCAGTG CAAATTGCTA chrX:21083392-21083512 54 1.43e-05 AGCAGTTGTC AAGCAGTG CGCCAAGCAG chr3R:11403038-11403158 53 1.43e-05 GCAGTAGACG AAGCAGTG TAGTCGAAGC chrX:3899487-3899607 59 1.43e-05 CAAGCAGTGG AAGCAGTG CAGCTGGCAA chrX:6589352-6589472 72 1.43e-05 ATATCATTGC AAGCAGTG CAGGCGCACC chr3L:9824369-9824489 60 1.43e-05 CAAGCAGTCG AAGCAGTG CGCCAAACAC chr3L:4553515-4553635 71 3.25e-05 GACTTCGAAA AAGCAGTT TACAACAGGA chr3R:31090120-31090240 29 3.25e-05 AACCGGATGC AAGCAGTT GCATAAGCAA chr3L:1940136-1940256 53 3.25e-05 AGCCGACGAA AAGCAGTT AAAAGCAGTT chr3R:21408515-21408635 79 3.25e-05 CTGCTTGTCG AAGCAGTT GATGCACTGC chr2L:3095046-3095166 40 3.25e-05 CAGTGCCAGA AAGCAGTT CACATGTTGC chrX:12626011-12626131 85 3.25e-05 TTATGTTTGC AAGCAGTT CAGAAAGAGA chrX:6586056-6586176 82 3.25e-05 CAAGCAGTGC AAGCAGTT CAATAAGTAA chrX:7340800-7340920 33 3.25e-05 TTGAAGCTTA AAGCAGTT GCTTGTATCC chrX:7522069-7522189 62 3.25e-05 ATTACAATTA AAGCAGTT TAGCCAATTA chr3L:2228733-2228853 37 3.25e-05 GTAAAACTGT AAGCAGTT TACTGCAAAC chr3R:16304416-16304536 105 3.25e-05 AACTGCGGCA AAGCAGTT TTAACACT chr3L:9820397-9820517 3 4.69e-05 AG AAGCAGTC CAAAAAGGAA chr3R:20154800-20154920 61 4.69e-05 TTTGACGTGC AAGCAGTC CCTGCAGCCA chrX:2102484-2102604 42 4.69e-05 CTCAGCTCGC AAGCAGTC GCCGTTCGTC chrX:12633958-12634078 12 5.81e-05 GAGTAGCAAC AAGCAGGG CCAAGCAGTG chr2R:14799008-14799128 79 5.81e-05 gtagcagtag aagcagGG TAAAACGGCA chr2R:14799623-14799743 70 8.76e-05 TTCAAAAACC AAGCAGCG CATAGCTACG chr3L:6764013-6764133 26 8.76e-05 ACTTGTCAGC AAGCAGTA AACCCGAACC chr3L:17050829-17050949 77 8.76e-05 CTGTTACGCC AAGCAGTA CTTCAAGCAG chr3R:6780191-6780311 20 1.16e-04 GTTTCTAAAC AAGCAGCT TACATATGTT chr3L:15079455-15079575 2 1.28e-04 A AAGCAGGC AGCTCATATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8478097-8478217 1.4e-05 35_[+4]_77 chr3L:3789281-3789401 1.4e-05 73_[+4]_39 chrX:12947808-12947928 1.4e-05 48_[+4]_64 chr2L:16049702-16049822 1.4e-05 53_[+4]_59 chr3L:1593032-1593152 1.4e-05 81_[+4]_31 chr3R:17449532-17449652 1.4e-05 13_[+4]_99 chr3R:30154007-30154127 1.4e-05 60_[+4]_52 chr2R:8051926-8052046 1.4e-05 23_[+4]_89 chr3R:6819337-6819457 1.4e-05 68_[+4]_44 chr3R:7041052-7041172 1.4e-05 35_[+4]_77 chrX:2106504-2106624 1.4e-05 33_[+4]_79 chrX:5934050-5934170 1.4e-05 74_[+4]_38 chrX:2096505-2096625 1.4e-05 55_[+4]_57 chrX:11800017-11800137 1.4e-05 48_[+4]_64 chrX:4139163-4139283 1.4e-05 43_[+4]_69 chrX:12967443-12967563 1.4e-05 76_[+4]_36 chrX:21083392-21083512 1.4e-05 53_[+4]_59 chr3R:11403038-11403158 1.4e-05 52_[+4]_60 chrX:3899487-3899607 1.4e-05 58_[+4]_54 chrX:6589352-6589472 1.4e-05 71_[+4]_41 chr3L:9824369-9824489 1.4e-05 59_[+4]_53 chr3L:4553515-4553635 3.3e-05 70_[+4]_42 chr3R:31090120-31090240 3.3e-05 28_[+4]_84 chr3L:1940136-1940256 3.3e-05 52_[+4]_60 chr3R:21408515-21408635 3.3e-05 78_[+4]_34 chr2L:3095046-3095166 3.3e-05 39_[+4]_73 chrX:12626011-12626131 3.3e-05 84_[+4]_28 chrX:6586056-6586176 3.3e-05 81_[+4]_31 chrX:7340800-7340920 3.3e-05 32_[+4]_80 chrX:7522069-7522189 3.3e-05 61_[+4]_51 chr3L:2228733-2228853 3.3e-05 36_[+4]_76 chr3R:16304416-16304536 3.3e-05 104_[+4]_8 chr3L:9820397-9820517 4.7e-05 2_[+4]_110 chr3R:20154800-20154920 4.7e-05 60_[+4]_52 chrX:2102484-2102604 4.7e-05 41_[+4]_71 chrX:12633958-12634078 5.8e-05 11_[+4]_101 chr2R:14799008-14799128 5.8e-05 78_[+4]_34 chr2R:14799623-14799743 8.8e-05 69_[+4]_43 chr3L:6764013-6764133 8.8e-05 25_[+4]_87 chr3L:17050829-17050949 8.8e-05 76_[+4]_36 chr3R:6780191-6780311 0.00012 19_[+4]_93 chr3L:15079455-15079575 0.00013 1_[+4]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGCAGTK width=8 seqs=42 chr2L:8478097-8478217 ( 36) AAGCAGTG 1 chr3L:3789281-3789401 ( 74) AAGCAGTG 1 chrX:12947808-12947928 ( 49) AAGCAGTG 1 chr2L:16049702-16049822 ( 54) AAGCAGTG 1 chr3L:1593032-1593152 ( 82) AAGCAGTG 1 chr3R:17449532-17449652 ( 14) AAGCAGTG 1 chr3R:30154007-30154127 ( 61) AAGCAGTG 1 chr2R:8051926-8052046 ( 24) AAGCAGTG 1 chr3R:6819337-6819457 ( 69) AAGCAGTG 1 chr3R:7041052-7041172 ( 36) AAGCAGTG 1 chrX:2106504-2106624 ( 34) AAGCAGTG 1 chrX:5934050-5934170 ( 75) AAGCAGTG 1 chrX:2096505-2096625 ( 56) AAGCAGTG 1 chrX:11800017-11800137 ( 49) AAGCAGTG 1 chrX:4139163-4139283 ( 44) AAGCAGTG 1 chrX:12967443-12967563 ( 77) AAGCAGTG 1 chrX:21083392-21083512 ( 54) AAGCAGTG 1 chr3R:11403038-11403158 ( 53) AAGCAGTG 1 chrX:3899487-3899607 ( 59) AAGCAGTG 1 chrX:6589352-6589472 ( 72) AAGCAGTG 1 chr3L:9824369-9824489 ( 60) AAGCAGTG 1 chr3L:4553515-4553635 ( 71) AAGCAGTT 1 chr3R:31090120-31090240 ( 29) AAGCAGTT 1 chr3L:1940136-1940256 ( 53) AAGCAGTT 1 chr3R:21408515-21408635 ( 79) AAGCAGTT 1 chr2L:3095046-3095166 ( 40) AAGCAGTT 1 chrX:12626011-12626131 ( 85) AAGCAGTT 1 chrX:6586056-6586176 ( 82) AAGCAGTT 1 chrX:7340800-7340920 ( 33) AAGCAGTT 1 chrX:7522069-7522189 ( 62) AAGCAGTT 1 chr3L:2228733-2228853 ( 37) AAGCAGTT 1 chr3R:16304416-16304536 ( 105) AAGCAGTT 1 chr3L:9820397-9820517 ( 3) AAGCAGTC 1 chr3R:20154800-20154920 ( 61) AAGCAGTC 1 chrX:2102484-2102604 ( 42) AAGCAGTC 1 chrX:12633958-12634078 ( 12) AAGCAGGG 1 chr2R:14799008-14799128 ( 79) AAGCAGGG 1 chr2R:14799623-14799743 ( 70) AAGCAGCG 1 chr3L:6764013-6764133 ( 26) AAGCAGTA 1 chr3L:17050829-17050949 ( 77) AAGCAGTA 1 chr3R:6780191-6780311 ( 20) AAGCAGCT 1 chr3L:15079455-15079575 ( 2) AAGCAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 2.0e-024 184 -1204 -1204 -1204 184 -1204 -1204 -1204 -1204 -1204 219 -1204 -1204 218 -1204 -1204 184 -1204 -1204 -1204 -1204 -1204 219 -1204 -1204 -221 -162 165 -255 -121 138 3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 2.0e-024 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.047619 0.071429 0.880952 0.047619 0.095238 0.571429 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGCAGTK MEME-4 regular expression -------------------------------------------------------------------------------- AAGCAGT[GT] -------------------------------------------------------------------------------- Time 26.96 secs. ******************************************************************************** ******************************************************************************** MOTIF CARCARCA MEME-5 width = 8 sites = 23 llr = 213 E-value = 2.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARCARCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a4:a5:7 pos.-specific C a::a::a3 probability G ::6::5:: matrix T :::::::: bits 2.2 * * * 2.0 * * * 1.7 ** ** * 1.5 ** ** * Relative 1.3 ** ** * Entropy 1.1 ******** (13.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAGCA consensus A A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCARCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21589952-21590072 112 1.13e-05 GTGGCGTAaa cagcagca a chr2L:4821866-4821986 66 1.13e-05 gcaggagcca cagcagca gcaacgcaac chrX:16553081-16553201 86 1.13e-05 AAATAAGCAG CAGCAGCA GAAGCGCTGC chr2R:11790021-11790141 65 1.13e-05 TATCATATTG CAGCAGCA ATGGCCGCGC chr2R:14799008-14799128 6 1.13e-05 cgcag cagcagca gcaatagcgg chr2R:8394498-8394618 108 1.13e-05 ACTGTCGACG CAGCAGCA GAACA chrX:4139163-4139283 72 1.13e-05 GCGGCAAAAT CAGCAGCA TTGTCGGCAG chr2L:22146300-22146420 64 2.57e-05 GCACAGCTGG CAGCAACA GGAACAGCTG chr2L:5003834-5003954 63 2.57e-05 acaacagcaa cagcaaca GCGGGAGCAC chrX:12957729-12957849 65 2.57e-05 CACTGCTTGC CAGCAACA AGTTGTCGGC chr2R:6190265-6190385 44 4.01e-05 TCTTAATTCA CAACAGCA ACGACGTCAC chrX:7944415-7944535 67 4.01e-05 agaagaagag caacagca GGGTGCACTG chr3L:16381615-16381735 87 6.74e-05 CCACACTTAT CAGCAGCC CTTATCAGCG chrX:13128376-13128496 31 6.74e-05 GCGCAGacaa caacaaca ataaaacaca chr3L:14674163-14674283 59 6.74e-05 TGTGGATGAG CAACAACA GAGCTGTTAA chr2L:9731424-9731544 43 6.74e-05 CTAAGATCAT CAACAACA AGATCAAGTT chrX:11800017-11800137 70 6.74e-05 CCAAGCAGTC CAGCAGCC GATacaccca chrX:6589352-6589472 113 6.74e-05 TGCTTACCCG CAACAACA chrX:7925052-7925172 59 6.74e-05 GCACTGCTTG CAACAACA TGGACAACTG chrX:11798667-11798787 55 7.88e-05 CTGTCTGCTG CAGCAACC GCCTGACCCA chr2R:6142345-6142465 108 9.02e-05 GCAGTTGCCT CAACAGCC GAGAA chr3R:6870952-6871072 49 1.05e-04 TAATCGAAGA CAACAACC ATAACTTGTG chr3R:27651836-27651956 41 1.05e-04 TAATCTAATG CAACAACC CAGCGAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCARCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21589952-21590072 1.1e-05 111_[+5]_1 chr2L:4821866-4821986 1.1e-05 65_[+5]_47 chrX:16553081-16553201 1.1e-05 85_[+5]_27 chr2R:11790021-11790141 1.1e-05 64_[+5]_48 chr2R:14799008-14799128 1.1e-05 5_[+5]_107 chr2R:8394498-8394618 1.1e-05 107_[+5]_5 chrX:4139163-4139283 1.1e-05 71_[+5]_41 chr2L:22146300-22146420 2.6e-05 63_[+5]_49 chr2L:5003834-5003954 2.6e-05 62_[+5]_50 chrX:12957729-12957849 2.6e-05 64_[+5]_48 chr2R:6190265-6190385 4e-05 43_[+5]_69 chrX:7944415-7944535 4e-05 66_[+5]_46 chr3L:16381615-16381735 6.7e-05 86_[+5]_26 chrX:13128376-13128496 6.7e-05 30_[+5]_82 chr3L:14674163-14674283 6.7e-05 58_[+5]_54 chr2L:9731424-9731544 6.7e-05 42_[+5]_70 chrX:11800017-11800137 6.7e-05 69_[+5]_43 chrX:6589352-6589472 6.7e-05 112_[+5] chrX:7925052-7925172 6.7e-05 58_[+5]_54 chrX:11798667-11798787 7.9e-05 54_[+5]_58 chr2R:6142345-6142465 9e-05 107_[+5]_5 chr3R:6870952-6871072 0.0001 48_[+5]_64 chr3R:27651836-27651956 0.0001 40_[+5]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCARCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARCARCA width=8 seqs=23 chr3R:21589952-21590072 ( 112) CAGCAGCA 1 chr2L:4821866-4821986 ( 66) CAGCAGCA 1 chrX:16553081-16553201 ( 86) CAGCAGCA 1 chr2R:11790021-11790141 ( 65) CAGCAGCA 1 chr2R:14799008-14799128 ( 6) CAGCAGCA 1 chr2R:8394498-8394618 ( 108) CAGCAGCA 1 chrX:4139163-4139283 ( 72) CAGCAGCA 1 chr2L:22146300-22146420 ( 64) CAGCAACA 1 chr2L:5003834-5003954 ( 63) CAGCAACA 1 chrX:12957729-12957849 ( 65) CAGCAACA 1 chr2R:6190265-6190385 ( 44) CAACAGCA 1 chrX:7944415-7944535 ( 67) CAACAGCA 1 chr3L:16381615-16381735 ( 87) CAGCAGCC 1 chrX:13128376-13128496 ( 31) CAACAACA 1 chr3L:14674163-14674283 ( 59) CAACAACA 1 chr2L:9731424-9731544 ( 43) CAACAACA 1 chrX:11800017-11800137 ( 70) CAGCAGCC 1 chrX:6589352-6589472 ( 113) CAACAACA 1 chrX:7925052-7925172 ( 59) CAACAACA 1 chrX:11798667-11798787 ( 55) CAGCAACC 1 chr2R:6142345-6142465 ( 108) CAACAGCC 1 chr3R:6870952-6871072 ( 49) CAACAACC 1 chr3R:27651836-27651956 ( 41) CAACAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCARCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 2.5e+002 -1117 218 -1117 -1117 184 -1117 -1117 -1117 64 -1117 136 -1117 -1117 218 -1117 -1117 184 -1117 -1117 -1117 78 -1117 125 -1117 -1117 218 -1117 -1117 140 24 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCARCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.5e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.434783 0.000000 0.565217 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.478261 0.000000 0.521739 0.000000 0.000000 1.000000 0.000000 0.000000 0.739130 0.260870 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCARCA MEME-5 regular expression -------------------------------------------------------------------------------- CA[GA]CA[GA]C[AC] -------------------------------------------------------------------------------- Time 32.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9824369-9824489 1.24e-07 41_[+1(1.45e-05)]_[+2(1.44e-05)]_2_\ [+4(1.43e-05)]_11_[+2(1.44e-05)]_34 chr3R:11807770-11807890 4.02e-07 61_[+1(1.45e-05)]_7_[+4(1.43e-05)]_\ 36 chrX:7925052-7925172 3.86e-05 23_[+1(3.29e-05)]_19_[+1(1.45e-05)]_\ [+5(6.74e-05)]_6_[+1(1.45e-05)]_40 chrX:10308105-10308225 1.81e-03 30_[+1(1.45e-05)]_10_[+1(1.45e-05)]_\ 7_[+1(1.45e-05)]_49 chrX:6104868-6104988 1.01e-03 35_[+1(1.45e-05)]_20_[+1(1.45e-05)]_\ 49 chr2L:7315666-7315786 6.59e-04 33_[+1(1.45e-05)]_1_[+1(1.45e-05)]_\ 3_[+1(3.29e-05)]_59 chrX:6589352-6589472 1.19e-05 48_[+2(1.44e-05)]_15_[+4(1.43e-05)]_\ 33_[+5(6.74e-05)] chr3L:17050829-17050949 8.58e-04 75_[+2(1.44e-05)]_5_[+4(1.43e-05)]_\ 24 chr2L:2815812-2815932 1.89e-03 72_[+1(1.45e-05)]_2_[+1(1.45e-05)]_\ 30 chrX:3899487-3899607 1.61e-03 40_[+4(1.43e-05)]_1_[+4(1.43e-05)]_\ 1_[+4(1.43e-05)]_54 chrX:7350111-7350231 3.83e-03 29_[+1(1.45e-05)]_14_[+1(1.45e-05)]_\ 61 chr3R:11403038-11403158 1.13e-04 39_[+2(3.25e-05)]_5_[+4(1.43e-05)]_\ 6_[+4(5.81e-05)]_3_[+2(5.07e-05)]_35 chrX:16565533-16565653 3.62e-03 24_[+3(3.29e-05)]_7_[+1(3.29e-05)]_\ 7_[+1(1.45e-05)]_58 chr3R:16304416-16304536 6.35e-04 41_[+4(1.43e-05)]_54_[+2(3.25e-05)]_\ 9 chrX:21083392-21083512 2.15e-03 41_[+2(1.44e-05)]_4_[+4(1.43e-05)]_\ 3_[+2(1.44e-05)]_48 chrX:19278530-19278650 8.98e-07 59_[+1(1.45e-05)]_1_[+2(7.64e-05)]_\ 6_[+1(3.29e-05)]_30 chrX:12967443-12967563 1.69e-07 52_[+3(1.45e-05)]_16_[+4(1.43e-05)]_\ 22_[+4(1.43e-05)]_6 chrX:8634941-8635061 3.99e-04 1_[+1(3.29e-05)]_9_[+1(1.45e-05)]_9_\ [+1(1.45e-05)]_77 chrX:4139163-4139283 2.20e-05 43_[+4(1.43e-05)]_20_[+5(1.13e-05)]_\ 24_[+2(1.44e-05)]_9 chrX:9046674-9046794 9.52e-04 32_[+3(1.45e-05)]_3_[+3(1.45e-05)]_\ 16_[+1(1.45e-05)]_45 chr3L:14357036-14357156 2.84e-03 39_[+1(1.45e-05)]_4_[+3(1.45e-05)]_\ 61 chrX:11800017-11800137 6.01e-05 48_[+4(1.43e-05)]_4_[+2(1.44e-05)]_\ 1_[+5(6.74e-05)]_43 chr3R:23971160-23971280 2.80e-04 50_[+3(7.74e-05)]_2_[+1(1.45e-05)]_\ 52 chrX:10261250-10261370 2.55e-03 27_[+1(1.45e-05)]_3_[+3(7.74e-05)]_\ 74 chrX:17912648-17912768 7.98e-06 35_[+1(1.45e-05)]_15_[+1(1.45e-05)]_\ 54 chr3R:18621328-18621448 3.47e-03 57_[+1(1.45e-05)]_1_[+1(1.45e-05)]_\ 46 chr3R:21069862-21069982 9.00e-01 120 chrX:17924182-17924302 4.67e-04 40_[+1(1.45e-05)]_35_[+1(1.45e-05)]_\ 29 chr3L:2228733-2228853 6.96e-04 36_[+4(3.25e-05)]_26_[+4(1.43e-05)]_\ 42 chrX:12957729-12957849 2.86e-05 40_[+1(3.29e-05)]_7_[+1(1.45e-05)]_\ 1_[+5(2.57e-05)]_11_[+3(1.45e-05)]_29 chrX:7522069-7522189 9.28e-03 41_[+2(9.07e-05)]_11_[+2(3.25e-05)]_\ 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22_[+1(1.45e-05)]_45_[+1(3.29e-05)]_\ 37 chrX:5992284-5992404 5.54e-04 37_[+4(1.43e-05)]_75 chrX:1963231-1963351 1.22e-03 20_[+3(1.45e-05)]_92 chr3R:21619874-21619994 2.96e-07 33_[+4(1.43e-05)]_9_[+1(3.29e-05)]_\ 25_[+3(1.45e-05)]_29 chrX:5524637-5524757 1.53e-03 28_[+3(1.45e-05)]_84 chr2L:21340822-21340942 1.96e-05 36_[+1(3.29e-05)]_76 chr3L:18026115-18026235 9.41e-04 47_[+1(1.45e-05)]_13_[+1(1.45e-05)]_\ 44 chr2R:11790021-11790141 2.69e-02 64_[+5(1.13e-05)]_48 chr3R:20634963-20635083 1.14e-07 42_[+3(1.45e-05)]_42_[+4(1.43e-05)]_\ 20 chr2L:10299366-10299486 2.89e-03 36_[+3(3.29e-05)]_76 chr3L:3766644-3766764 6.69e-01 120 chr3R:26535193-26535313 3.11e-06 36_[+3(1.45e-05)]_30_[+2(7.64e-05)]_\ 38 chr3R:9868558-9868678 7.49e-01 120 chr2L:3108404-3108524 3.15e-04 40_[+1(1.45e-05)]_4_[+3(1.45e-05)]_\ 60 chr3R:9328959-9329079 3.14e-05 57_[+3(1.45e-05)]_3_[+1(1.45e-05)]_\ 18_[+3(1.45e-05)]_18 chr3L:3766877-3766997 4.53e-01 120 chrX:3504471-3504591 4.99e-03 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10_[+4(1.43e-05)]_13_[+4(1.43e-05)]_10_[+2(9.07e-05)]_20 chrX:16150782-16150902 9.61e-02 120 chr3L:8159119-8159239 4.28e-04 50_[+2(3.25e-05)]_62 chr3R:21408515-21408635 3.14e-07 29_[+2(3.25e-05)]_17_[+4(3.25e-05)]_\ 4_[+3(6.28e-05)]_4_[+4(3.25e-05)]_5_[+1(1.45e-05)]_21 chr2L:4998128-4998248 2.42e-04 5_[+3(5.13e-05)]_25_[+1(1.45e-05)]_\ 74 chr2L:745910-746030 3.04e-01 120 chrX:12947808-12947928 2.95e-07 39_[+1(1.45e-05)]_1_[+4(1.43e-05)]_\ 26_[+2(1.44e-05)]_30 chr3R:24046600-24046720 2.40e-03 63_[+4(1.43e-05)]_49 chr3L:1940136-1940256 1.34e-03 51_[+2(3.25e-05)]_2_[+2(3.25e-05)]_\ 51 chr2R:8542948-8543068 1.67e-03 30_[+1(1.45e-05)]_10_[+1(6.58e-05)]_\ 28_[+3(5.13e-05)]_28 chr2R:24337638-24337758 1.83e-04 15_[+1(1.45e-05)]_63_[+1(1.45e-05)]_\ 10_[+1(9.17e-05)]_8 chr2L:12520376-12520496 8.72e-06 16_[+3(3.29e-05)]_62_[+2(5.07e-05)]_\ 26 chr3R:6908204-6908324 1.74e-06 19_[+1(1.45e-05)]_47_[+2(3.25e-05)]_\ 8_[+1(3.29e-05)]_2_[+1(3.29e-05)]_12 chr3L:647323-647443 5.64e-01 120 chr3L:1188944-1189064 4.99e-03 55_[+4(1.43e-05)]_57 chr2R:6152600-6152720 5.66e-01 120 chr3R:13714265-13714385 3.08e-04 107_[+1(1.45e-05)]_5 chr2R:6190265-6190385 4.99e-03 43_[+5(4.01e-05)]_69 chr3L:16884221-16884341 6.41e-04 45_[+1(1.45e-05)]_67 chr3R:12638268-12638388 8.82e-01 120 chr3R:16305261-16305381 2.52e-02 120 chrX:11798871-11798991 1.67e-03 74_[+1(1.45e-05)]_38 chr2R:23615049-23615169 9.39e-01 120 chr3R:20762639-20762759 3.31e-05 71_[+1(1.45e-05)]_41 chr2R:6142345-6142465 2.42e-01 107_[+5(9.02e-05)]_5 chrX:7066745-7066865 1.93e-01 120 chr3L:8028768-8028888 2.78e-04 38_[+4(1.43e-05)]_74 chr3L:10281953-10282073 1.63e-02 71_[+1(8.02e-05)]_41 chr3L:3789281-3789401 6.92e-08 64_[+3(1.45e-05)]_1_[+4(1.43e-05)]_\ 39 chr3R:5034798-5034918 9.74e-01 120 chr3L:3769293-3769413 7.77e-01 120 chr3L:13845426-13845546 5.44e-04 49_[+1(1.45e-05)]_14_[+1(1.45e-05)]_\ 41 chr2R:24684383-24684503 1.73e-04 85_[+4(1.43e-05)]_27 chr2R:17436539-17436659 3.44e-03 47_[+1(1.45e-05)]_2_[+3(1.45e-05)]_\ 55 chrX:9448582-9448702 3.68e-07 77_[+3(1.45e-05)]_2_[+2(1.44e-05)]_\ 25 chr2L:8478097-8478217 1.23e-07 11_[+2(1.44e-05)]_16_[+4(1.43e-05)]_\ 23_[+4(3.25e-05)]_3_[+1(1.45e-05)]_35 chr3L:139466-139586 3.76e-03 59_[+3(1.45e-05)]_53 chr2L:10964591-10964711 6.96e-04 7_[+3(1.45e-05)]_39_[+1(1.45e-05)]_\ 11_[+3(3.29e-05)]_39 chr2L:7029200-7029320 2.63e-03 95_[+1(3.29e-05)]_17 chr3R:31090120-31090240 2.85e-03 27_[+2(1.44e-05)]_8_[+2(9.07e-05)]_\ 11_[+2(1.44e-05)]_50 chr3R:16260506-16260626 3.14e-07 68_[+2(3.25e-05)]_4_[+1(1.45e-05)]_\ 32 chr2L:22146300-22146420 9.99e-06 38_[+4(1.43e-05)]_17_[+5(2.57e-05)]_\ 49 chrX:16693864-16693984 1.91e-04 70_[+3(3.29e-05)]_42 chr2L:4821866-4821986 6.16e-05 33_[+5(2.57e-05)]_9_[+5(1.13e-05)]_\ 7_[+5(1.13e-05)]_9_[+5(2.57e-05)]_1_[+2(1.44e-05)]_21 chr2L:20106703-20106823 7.51e-05 25_[+1(1.45e-05)]_87 chr3L:14671702-14671822 8.51e-01 120 chr3L:7654530-7654650 5.71e-02 120 chr3R:24585144-24585264 3.89e-06 36_[+1(1.45e-05)]_76 chr3R:28597721-28597841 8.49e-01 120 chrX:13128376-13128496 1.41e-02 27_[+5(6.74e-05)]_85 chr3R:10677654-10677774 6.29e-04 9_[+1(1.45e-05)]_22_[+1(3.29e-05)]_\ 17_[+1(1.45e-05)]_3_[+1(1.45e-05)]_37 chrX:13284816-13284936 5.16e-03 92_[+3(3.29e-05)]_20 chrX:2112781-2112901 4.37e-01 120 chr2L:19430398-19430518 2.65e-04 6_[+1(1.45e-05)]_106 chr3R:29866868-29866988 7.92e-01 120 chr2R:17604642-17604762 9.55e-01 120 chr3R:21589952-21590072 9.46e-08 18_[+1(1.45e-05)]_85_[+5(1.13e-05)]_\ 1 chrX:5613386-5613506 4.84e-01 120 chrX:658258-658378 9.22e-03 96_[+2(3.25e-05)]_16 chrX:16420168-16420288 5.28e-01 120 chr3R:17231820-17231940 6.31e-08 26_[+1(1.45e-05)]_17_[+2(1.44e-05)]_\ 61 chr2R:12140543-12140663 9.32e-07 35_[+2(1.44e-05)]_66_[+3(1.45e-05)]_\ 3 chrX:13632696-13632816 8.72e-01 120 chr3L:3811216-3811336 3.25e-03 74_[+3(1.45e-05)]_38 chr2R:23378369-23378489 5.44e-01 120 chr3R:8862721-8862841 9.70e-01 120 chr3L:7984791-7984911 3.72e-03 23_[+4(1.43e-05)]_89 chr3L:16381615-16381735 2.56e-05 63_[+1(1.45e-05)]_15_[+5(6.74e-05)]_\ 10_[+3(1.45e-05)]_8 chr3L:12392886-12393006 6.07e-01 120 chr3L:4553515-4553635 7.08e-05 [+2(1.44e-05)]_36_[+2(7.64e-05)]_17_\ [+2(3.25e-05)]_43 chr3R:23738086-23738206 2.79e-01 120 chr2R:15010809-15010929 3.57e-01 120 chr2L:14395202-14395322 2.74e-01 120 chr2L:13801297-13801417 9.17e-01 120 chr2L:10298489-10298609 1.13e-06 71_[+2(1.44e-05)]_7_[+1(1.45e-05)]_\ 26 chr2L:4345811-4345931 9.83e-01 120 chr2R:15249524-15249644 1.11e-01 120 chr3L:1885508-1885628 9.71e-01 120 chrX:16217025-16217145 5.13e-03 77_[+4(1.43e-05)]_35 chr2L:1987479-1987599 4.77e-02 120 chr2R:19728882-19729002 9.30e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************