******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3065.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:17165883-17166003 1.0000 120 chr3L:9474364-9474484 1.0000 120 chr4:1232639-1232759 1.0000 120 chr3R:23043739-23043859 1.0000 120 chr2R:7396483-7396603 1.0000 120 chr3L:18405725-18405845 1.0000 120 chr4:816775-816895 1.0000 120 chr4:626386-626506 1.0000 120 chr2L:18387881-18388001 1.0000 120 chr2L:15491310-15491430 1.0000 120 chr2L:19313618-19313738 1.0000 120 chr2L:16361551-16361671 1.0000 120 chrX:18084910-18085030 1.0000 120 chr3R:26876999-26877119 1.0000 120 chr3L:3165589-3165709 1.0000 120 chr2L:14472440-14472560 1.0000 120 chr3R:5084533-5084653 1.0000 120 chr3L:6929738-6929858 1.0000 120 chr4:1028211-1028331 1.0000 120 chr2L:18032921-18033041 1.0000 120 chr2R:21477472-21477592 1.0000 120 chr3R:9143894-9144014 1.0000 120 chrX:12576892-12577012 1.0000 120 chr3L:21048182-21048302 1.0000 120 chr3L:7368883-7369003 1.0000 120 chr3R:8707292-8707412 1.0000 120 chr3R:18507846-18507966 1.0000 120 chr3R:18050243-18050363 1.0000 120 chr3L:11254415-11254535 1.0000 120 chrX:6986879-6986999 1.0000 120 chr3R:14675945-14676065 1.0000 120 chr3R:5115552-5115672 1.0000 120 chr2L:3000268-3000388 1.0000 120 chr3L:17759117-17759237 1.0000 120 chr2L:20923330-20923450 1.0000 120 chr3L:18835010-18835130 1.0000 120 chr2R:15919091-15919211 1.0000 120 chrX:7424218-7424338 1.0000 120 chr3R:21822329-21822449 1.0000 120 chr2L:16679201-16679321 1.0000 120 chr3R:5551934-5552054 1.0000 120 chrX:10729596-10729716 1.0000 120 chr3R:15616979-15617099 1.0000 120 chr2L:11735797-11735917 1.0000 120 chr4:131145-131265 1.0000 120 chr2R:15795458-15795578 1.0000 120 chr2R:15657947-15658067 1.0000 120 chrX:13735821-13735941 1.0000 120 chr2L:3547075-3547195 1.0000 120 chrX:14824978-14825098 1.0000 120 chr2R:11090393-11090513 1.0000 120 chr2R:15760032-15760152 1.0000 120 chr3R:16228167-16228287 1.0000 120 chr3L:10254304-10254424 1.0000 120 chrX:20251839-20251959 1.0000 120 chr3L:14333107-14333227 1.0000 120 chr3R:21185152-21185272 1.0000 120 chr4:670183-670303 1.0000 120 chrX:17764166-17764286 1.0000 120 chr2R:11892467-11892587 1.0000 120 chr2R:6604546-6604666 1.0000 120 chrX:4190364-4190484 1.0000 120 chr3R:31462330-31462450 1.0000 120 chr3L:27082985-27083105 1.0000 120 chr3R:31086551-31086671 1.0000 120 chr2L:22534169-22534289 1.0000 120 chr2R:7158918-7159038 1.0000 120 chr3R:16782542-16782662 1.0000 120 chr3R:16934845-16934965 1.0000 120 chr2L:10404192-10404312 1.0000 120 chrX:18657136-18657256 1.0000 120 chr2R:20845444-20845564 1.0000 120 chr2R:18674803-18674923 1.0000 120 chr2L:5411479-5411599 1.0000 120 chr3L:15756067-15756187 1.0000 120 chr4:234540-234660 1.0000 120 chr3L:12063805-12063925 1.0000 120 chr3L:900371-900491 1.0000 120 chr3L:10748880-10749000 1.0000 120 chrX:5770931-5771051 1.0000 120 chr2R:20943864-20943984 1.0000 120 chr3R:14557905-14558025 1.0000 120 chr3L:10860116-10860236 1.0000 120 chr3L:20792884-20793004 1.0000 120 chr2L:11516263-11516383 1.0000 120 chr3L:18243754-18243874 1.0000 120 chr2R:14005728-14005848 1.0000 120 chr2L:2458762-2458882 1.0000 120 chr2R:13039045-13039165 1.0000 120 chr2L:11473995-11474115 1.0000 120 chr2R:14143690-14143810 1.0000 120 chr2R:24514548-24514668 1.0000 120 chr3R:28888410-28888530 1.0000 120 chr2L:17383732-17383852 1.0000 120 chr2L:5469550-5469670 1.0000 120 chr3R:29262850-29262970 1.0000 120 chr3R:20004824-20004944 1.0000 120 chr4:829270-829390 1.0000 120 chr4:448959-449079 1.0000 120 chr2R:17719568-17719688 1.0000 120 chr3R:23133342-23133462 1.0000 120 chr2L:9252609-9252729 1.0000 120 chr3R:21616050-21616170 1.0000 120 chr3L:20498219-20498339 1.0000 120 chr3L:3514647-3514767 1.0000 120 chr2R:19270926-19271046 1.0000 120 chr2L:19951501-19951621 1.0000 120 chr2R:15913499-15913619 1.0000 120 chr3R:5096078-5096198 1.0000 120 chr3R:23131662-23131782 1.0000 120 chrX:5888162-5888282 1.0000 120 chr2L:7519955-7520075 1.0000 120 chr3L:7911346-7911466 1.0000 120 chr3L:17409699-17409819 1.0000 120 chr2L:19866712-19866832 1.0000 120 chrX:3143537-3143657 1.0000 120 chr2R:6162760-6162880 1.0000 120 chr3R:16847381-16847501 1.0000 120 chr3L:14275519-14275639 1.0000 120 chrX:8659486-8659606 1.0000 120 chr2L:6234015-6234135 1.0000 120 chrX:13616187-13616307 1.0000 120 chr2L:19576366-19576486 1.0000 120 chr2R:5987298-5987418 1.0000 120 chr2R:21870970-21871090 1.0000 120 chr2R:5126911-5127031 1.0000 120 chr3R:16350580-16350700 1.0000 120 chr2L:3372663-3372783 1.0000 120 chr3R:27636957-27637077 1.0000 120 chr3R:5300704-5300824 1.0000 120 chr3R:22044633-22044753 1.0000 120 chr3R:23038708-23038828 1.0000 120 chr2L:5743704-5743824 1.0000 120 chr3R:31712893-31713013 1.0000 120 chrX:11440425-11440545 1.0000 120 chr3L:5975131-5975251 1.0000 120 chr2L:14568848-14568968 1.0000 120 chr3L:128734-128854 1.0000 120 chrX:13231267-13231387 1.0000 120 chr2L:4057014-4057134 1.0000 120 chr3R:13797280-13797400 1.0000 120 chr2R:6529960-6530080 1.0000 120 chrX:22499759-22499879 1.0000 120 chr3L:10353655-10353775 1.0000 120 chr3R:15617974-15618094 1.0000 120 chr3L:10691229-10691349 1.0000 120 chrX:13277748-13277868 1.0000 120 chr3L:10691017-10691137 1.0000 120 chr2R:15713004-15713124 1.0000 120 chr2R:6042568-6042688 1.0000 120 chr2R:5744424-5744544 1.0000 120 chr3R:5080652-5080772 1.0000 120 chr3L:22932909-22933029 1.0000 120 chr3L:20399059-20399179 1.0000 120 chr2R:8018919-8019039 1.0000 120 chr3L:12648552-12648672 1.0000 120 chrX:6853591-6853711 1.0000 120 chr2L:20917112-20917232 1.0000 120 chrX:4672250-4672370 1.0000 120 chr3L:10581978-10582098 1.0000 120 chr2R:9419731-9419851 1.0000 120 chr2R:8030958-8031078 1.0000 120 chr3R:4979326-4979446 1.0000 120 chrX:9586236-9586356 1.0000 120 chr3R:9064803-9064923 1.0000 120 chr2R:9109574-9109694 1.0000 120 chr2L:19204725-19204845 1.0000 120 chr3R:30820862-30820982 1.0000 120 chrX:16694091-16694211 1.0000 120 chrX:5995896-5996016 1.0000 120 chr3L:3097408-3097528 1.0000 120 chr3R:24749585-24749705 1.0000 120 chr3L:13863479-13863599 1.0000 120 chr3L:15347816-15347936 1.0000 120 chrX:7659721-7659841 1.0000 120 chrX:13736020-13736140 1.0000 120 chr3R:10100599-10100719 1.0000 120 chrX:9156690-9156810 1.0000 120 chr3L:3885809-3885929 1.0000 120 chr2L:5799563-5799683 1.0000 120 chr4:42373-42493 1.0000 120 chr3R:32006199-32006319 1.0000 120 chr2R:11890645-11890765 1.0000 120 chr4:797077-797197 1.0000 120 chr3L:1178163-1178283 1.0000 120 chr2L:1436294-1436414 1.0000 120 chrX:9134268-9134388 1.0000 120 chrX:13189282-13189402 1.0000 120 chrX:12957719-12957839 1.0000 120 chr3L:5844077-5844197 1.0000 120 chr2R:5982468-5982588 1.0000 120 chr3R:31197016-31197136 1.0000 120 chr3R:5025327-5025447 1.0000 120 chr3L:14633219-14633339 1.0000 120 chr3R:16764211-16764331 1.0000 120 chr3L:21049481-21049601 1.0000 120 chrX:3140343-3140463 1.0000 120 chr3L:23022698-23022818 1.0000 120 chr2L:19134384-19134504 1.0000 120 chr2L:9459594-9459714 1.0000 120 chr2R:7423367-7423487 1.0000 120 chr3L:19294102-19294222 1.0000 120 chr3L:4976642-4976762 1.0000 120 chr2L:2987269-2987389 1.0000 120 chr3R:13360239-13360359 1.0000 120 chr2L:7310418-7310538 1.0000 120 chr2L:19336929-19337049 1.0000 120 chr2L:3867637-3867757 1.0000 120 chr3L:7335143-7335263 1.0000 120 chr2R:13560681-13560801 1.0000 120 chr3R:6963532-6963652 1.0000 120 chr2R:10102433-10102553 1.0000 120 chr2L:2014003-2014123 1.0000 120 chrX:17313481-17313601 1.0000 120 chr2R:18583152-18583272 1.0000 120 chrX:3368622-3368742 1.0000 120 chr2L:3571613-3571733 1.0000 120 chr3R:12369265-12369385 1.0000 120 chr2L:11224807-11224927 1.0000 120 chr3R:21347536-21347656 1.0000 120 chr3R:29773116-29773236 1.0000 120 chrX:3332546-3332666 1.0000 120 chr2L:21619235-21619355 1.0000 120 chr2L:6821757-6821877 1.0000 120 chr3R:30888663-30888783 1.0000 120 chr3L:22724452-22724572 1.0000 120 chrX:5716095-5716215 1.0000 120 chr2R:24540629-24540749 1.0000 120 chrX:21338519-21338639 1.0000 120 chr3L:1102601-1102721 1.0000 120 chrX:6091276-6091396 1.0000 120 chr3R:6678649-6678769 1.0000 120 chr3L:26224096-26224216 1.0000 120 chr3R:16655921-16656041 1.0000 120 chr3R:15262905-15263025 1.0000 120 chr3L:9024759-9024879 1.0000 120 chr3L:7947961-7948081 1.0000 120 chr3R:15672625-15672745 1.0000 120 chr2L:17262278-17262398 1.0000 120 chr3R:21855812-21855932 1.0000 120 chr2R:5088420-5088540 1.0000 120 chr3L:5989844-5989964 1.0000 120 chr2L:9496460-9496580 1.0000 120 chr3R:28629691-28629811 1.0000 120 chr2R:10806686-10806806 1.0000 120 chr2L:4197720-4197840 1.0000 120 chr3L:11772838-11772958 1.0000 120 chr3R:16919189-16919309 1.0000 120 chr2R:14030485-14030605 1.0000 120 chr2L:7993230-7993350 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG3065/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3065.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.237 C 0.26 G 0.258 T 0.245 Background letter frequencies (from file dataset with add-one prior applied): A 0.237 C 0.26 G 0.258 T 0.245 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCACGCCC MEME-1 width = 8 sites = 131 llr = 1226 E-value = 5.4e-169 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACGCCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a:::1: pos.-specific C 8a:a:a9a probability G 1:::a::: matrix T :::::::: bits 2.1 1.9 **** * 1.7 ***** * 1.5 ******* Relative 1.2 ******* Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACGCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGCCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7993230-7993350 40 1.89e-05 ACCCCACATG CCACGCCC ACCCCCCACC chr3L:7947961-7948081 42 1.89e-05 AGCCACTTAG CCACGCCC CATGCCATCA chr3L:9024759-9024879 60 1.89e-05 CCACCCCCTG CCACGCCC CTTCCGCCCA chr3L:26224096-26224216 13 1.89e-05 aaactttttg ccacgccc actctaacgc chrX:5716095-5716215 84 1.89e-05 GTTGGCCTGG CCACGCCC CCTCCGTCCG chr3L:22724452-22724572 100 1.89e-05 CTTCTTCTTG CCACGCCC GTAAAGATGG chr2L:21619235-21619355 41 1.89e-05 actcatgttg ccacgccc actctaacgt chr3R:29773116-29773236 24 1.89e-05 CCCCTACGCC CCACGCCC ACTAGTGCTC chr2L:3571613-3571733 32 1.89e-05 CTACACCATG CCACGCCC ATCAGCAGTT chrX:3368622-3368742 28 1.89e-05 GACAGTACCG CCACGCCC CCGAATTCAC chr2R:10102433-10102553 9 1.89e-05 TTGCTACG CCACGCCC CGCCGCCCTT chr2L:2987269-2987389 57 1.89e-05 TGCTGAGCAG CCACGCCC ACAAAACTGA chr2L:9459594-9459714 45 1.89e-05 ACCCGACTGG CCACGCCC ACCGCCCACA chrX:3140343-3140463 81 1.89e-05 TGCGCCCCTG CCACGCCC CCTAGAAATC chr3L:21049481-21049601 54 1.89e-05 ACGCCCACGT CCACGCCC ACACAACTCA chr3R:5025327-5025447 73 1.89e-05 TCACGCACTG CCACGCCC CCGGCCCCGA chr3R:31197016-31197136 41 1.89e-05 CGCAAAACTG CCACGCCC ACAATCGCGG chr3L:5844077-5844197 16 1.89e-05 CGACGCACGG CCACGCCC CGCTGCACGC chr3L:1178163-1178283 44 1.89e-05 CACAACTTGG CCACGCCC CTAAAAGTGC chr2R:11890645-11890765 4 1.89e-05 CGG CCACGCCC ACTCACTAAC chr3R:10100599-10100719 40 1.89e-05 ACCACTCTTG CCACGCCC CCACCGCTGC chr3L:15347816-15347936 46 1.89e-05 TCGTCTCCGG CCACGCCC ACACGCAGGC chr3R:24749585-24749705 25 1.89e-05 GCCTGCCCTG CCACGCCC CTCGTCCACC chrX:16694091-16694211 33 1.89e-05 ATGACGCTGG CCACGCCC CCCGCCGCTG chr3R:30820862-30820982 45 1.89e-05 GTTGCCACGG CCACGCCC ACGCACCCGG chr2L:19204725-19204845 73 1.89e-05 GCCCACACGG CCACGCCC CCTCCATGCC chr2R:9109574-9109694 57 1.89e-05 AGTCAGTCTG CCACGCCC CTTTATAAAC chr2R:8030958-8031078 59 1.89e-05 GCAGTGACGA CCACGCCC ACCCCGTGGT chr3L:10581978-10582098 59 1.89e-05 GCAGCGGCGG CCACGCCC ATAATGCTCG chr3L:12648552-12648672 67 1.89e-05 GTTTGTAGTG CCACGCCC CCCAAATGAG chr3L:20399059-20399179 78 1.89e-05 ATGGATATGG CCACGCCC ATAGCCCATA chr3R:5080652-5080772 71 1.89e-05 TAGCCGCCTG CCACGCCC ATCAGCGCCC chr2R:5744424-5744544 32 1.89e-05 acccatcttg ccacgccc actctaacgc chr2R:15713004-15713124 73 1.89e-05 cgcccatcgg ccacgccc acTGGCGGAA chr3L:10691229-10691349 49 1.89e-05 CGCCCCCGGG CCACGCCC CCTTGTCCTA chr3L:10353655-10353775 84 1.89e-05 TACGCCCCAG CCACGCCC ACACGTCTAA chrX:22499759-22499879 61 1.89e-05 CGCACACCTG CCACGCCC CTAACATGGT chr2R:6529960-6530080 53 1.89e-05 CCCTTGCGGG CCACGCCC CCTCCTGCTC chrX:11440425-11440545 47 1.89e-05 CCAGACAATG CCACGCCC ACAGATGGCT chr2L:19576366-19576486 41 1.89e-05 TTTGCACCTG CCACGCCC AGCAGCCCCT chr3L:14275519-14275639 62 1.89e-05 TCCACGGCGG CCACGCCC ACAAGGAGTG chr3R:16847381-16847501 96 1.89e-05 TTCCCAAGTG CCACGCCC ACGCGCCCCA chrX:3143537-3143657 9 1.89e-05 CCGCCGCT CCACGCCC CAACGCCCCT chr2L:19866712-19866832 22 1.89e-05 GGCGCGATTG CCACGCCC CTTGTTAGCC chr3L:7911346-7911466 46 1.89e-05 TTTGGAGCTG CCACGCCC CGCGCCCTCT chr2L:7519955-7520075 46 1.89e-05 CGCGCTGCTG CCACGCCC ACAGCGCCCA chrX:5888162-5888282 73 1.89e-05 TGCTTGTCAG CCACGCCC ATTTCTGCAC chr3R:5096078-5096198 12 1.89e-05 TTCATCGCTG CCACGCCC CTTTCCCTGC chr2R:15913499-15913619 27 1.89e-05 CTTAGCCTGG CCACGCCC ACATTCCGAC chr2L:19951501-19951621 20 1.89e-05 GGAGAcacga ccacgccc ccgcctcagc chr4:448959-449079 79 1.89e-05 cccacaactg ccacgccc acacttttaa chr3R:20004824-20004944 51 1.89e-05 GGGGGCGTGG CCACGCCC TGCTCGTCAC chr3R:29262850-29262970 42 1.89e-05 GTCAATGCAG CCACGCCC ACGGCCGCCA chr3R:28888410-28888530 81 1.89e-05 CCGCCCCTCG CCACGCCC CCAGCTAATA chr2L:11473995-11474115 10 1.89e-05 CCAGACCAA CCACGCCC ACACCCAGCG chr2L:2458762-2458882 6 1.89e-05 GGCAG CCACGCCC ACATCCACGT chr3L:18243754-18243874 30 1.89e-05 CCCTCTCCGC CCACGCCC CCTTCGGCGA chrX:5770931-5771051 72 1.89e-05 AATGCATGGC CCACGCCC ACGCCAGCAG chr3L:10748880-10749000 27 1.89e-05 TCCCCAAAAA CCACGCCC ACCTGCTTGA chr3L:900371-900491 36 1.89e-05 CTCAACGATG CCACGCCC ACGGAGATAC chr2R:18674803-18674923 52 1.89e-05 AGTTGCAGGA CCACGCCC ACGGGCACGC chr3R:16782542-16782662 70 1.89e-05 ATGGGGCGGG CCACGCCC TCCTTAGCCC chr2R:7158918-7159038 69 1.89e-05 GAGTGTGGTG CCACGCCC CTACTCCACC chr2R:6604546-6604666 61 1.89e-05 CTCGCCCCAG CCACGCCC ACGACACGCC chr2R:11892467-11892587 52 1.89e-05 AATTACTTTG CCACGCCC ACGCCGGACA chr4:670183-670303 4 1.89e-05 TTG CCACGCCC ACAAACCGCA chr3R:21185152-21185272 38 1.89e-05 AGCAGCTCTG CCACGCCC ACCTCGCCCG chr3L:14333107-14333227 41 1.89e-05 GGACATGCGA CCACGCCC CCTAGACAGC chr3L:10254304-10254424 44 1.89e-05 AAACTCTCAG CCACGCCC ACACTGTTTT chr2R:15760032-15760152 32 1.89e-05 AATCAACCAG CCACGCCC ACAGAGACCG chr2R:11090393-11090513 41 1.89e-05 AATGCTAATG CCACGCCC CTATCATTGT chr2L:3547075-3547195 39 1.89e-05 AATGCACTTG CCACGCCC CCATCAACAG chr2R:15795458-15795578 29 1.89e-05 GTGGGCAGTG CCACGCCC ACCCGCACAC chr3R:21822329-21822449 14 1.89e-05 TGCTCATGTT CCACGCCC CCTTATCAAC chr3L:18835010-18835130 68 1.89e-05 TCCGGGGCTG CCACGCCC ACTTTGTGCC chr2L:20923330-20923450 86 1.89e-05 aaactttttg ccacgccc actctaacgc chr3L:17759117-17759237 60 1.89e-05 AACGCACATG CCACGCCC ACATTTCTCG chr3L:11254415-11254535 44 1.89e-05 GCGGCCATCG CCACGCCC ACCAACTAAT chr3R:18050243-18050363 40 1.89e-05 GCCCCCGTCG CCACGCCC ACAGTCAGAG chr3L:21048182-21048302 52 1.89e-05 TTATCAACCG CCACGCCC CCCGCCCCTC chrX:12576892-12577012 14 1.89e-05 CAATGGGCGG CCACGCCC ATTTGCCCTC chr3L:6929738-6929858 76 1.89e-05 tTGGCATGTG CCACGCCC ACTCCGCTAG chr2L:14472440-14472560 46 1.89e-05 acgcagacag ccacgccc acTTGGCGCT chr3L:3165589-3165709 21 1.89e-05 TCTTGTTTTG CCACGCCC CCCGCGTCCT chr3R:26876999-26877119 82 1.89e-05 ACGCCCACCG CCACGCCC CCAGTGACGC chr2L:15491310-15491430 40 1.89e-05 TATTGGAGTG CCACGCCC ACTCAACCTG chr2L:18387881-18388001 18 1.89e-05 CGCTAGTCTG CCACGCCC ACTGTGCTCG chr3L:18405725-18405845 64 1.89e-05 GCGCCAGCTG CCACGCCC CTCCCACCGC chr2R:7396483-7396603 42 1.89e-05 acccatgttg ccacgccc acaaaccgca chr4:1232639-1232759 57 1.89e-05 accaatgttg ccacgccc acaaaccgcc chr3L:9474364-9474484 30 1.89e-05 TCTGGCCACG CCACGCCC ACATCACGCC chrX:17165883-17166003 36 1.89e-05 CTGCCACTGG CCACGCCC CCAAAACCTT chrX:3332546-3332666 21 5.33e-05 TGTGACCTTG ACACGCCC CTTTTACCAC chr2R:13560681-13560801 20 5.33e-05 TTGCTAGTAG ACACGCCC ACGCAGGCCC chrX:7659721-7659841 12 5.33e-05 AGGGGGCGGG ACACGCCC ACCTGGCTGA chr3R:16350580-16350700 36 5.33e-05 GTTACATGGA ACACGCCC ACTTAGCTAA chr2R:6162760-6162880 107 5.33e-05 aaactttttg ccacgcac actcta chr4:816775-816895 70 5.33e-05 aaaattgttg acacgccc actcgaacgc chr2L:17262278-17262398 14 7.21e-05 GTAAATAGCG GCACGCCC ATAAAACAAT chr2R:24540629-24540749 77 7.21e-05 TTCGCTCTGG GCACGCCC CCTTATGACG chr3L:10691017-10691137 45 7.21e-05 ACATGCACAA GCACGCCC ACTTCTCTTA chr3R:15616979-15617099 43 7.21e-05 CTGGGGGCAG GCACGCCC ACTTTTCCAA chr4:42373-42493 79 8.99e-05 gccaaaccgg tcacgccc acactattga chr2R:8018919-8019039 55 8.99e-05 GAGGCCCGTT TCACGCCC CTGCTGCAGT chr2R:17719568-17719688 71 8.99e-05 GCCCCTTTGG TCACGCCC CCGCGCGATA chr3L:4976642-4976762 46 1.11e-04 CGTTCTGTTG CCCCGCCC ACTTCACCCC chr3L:14633219-14633339 3 1.11e-04 GG CCCCGCCC CCCAAGTGGC chr3L:13863479-13863599 43 1.11e-04 CCCGGGGCAG CCCCGCCC CCTTTTTTCG chr3R:13797280-13797400 13 1.11e-04 GCCACGCCTC CCCCGCCC ACAATAGTTC chr3L:7335143-7335263 47 1.28e-04 GCTACGAAAA CAACGCCC AAAAGCCAGG chr3R:8707292-8707412 50 1.28e-04 TCCCACCGCC CAACGCCC ACTTTGTCCG chr2L:4197720-4197840 33 1.64e-04 GCCGTTACTG CCACTCCC CTCAAAAAGG chr2R:5982468-5982588 59 1.64e-04 CCACAAATCC CCATGCCC TCACACGCCG chrX:9134268-9134388 2 1.64e-04 G CCACTCCC TCCTTTTTCT chrX:9156690-9156810 66 1.64e-04 TCTGACAAGA CCATGCCC GCCAAATAGT chr3L:5975131-5975251 80 1.64e-04 TTGAATACGG CCATGCCC CGTTTCCGCC chrX:14824978-14825098 102 1.64e-04 AAGCCTAAGc ccactccc acacactctc chrX:21338519-21338639 76 1.79e-04 CAACAATAAC ACACGCAC GCATACATCC chrX:13616187-13616307 5 1.79e-04 acat acacgcac gcacacacac chr2L:17383732-17383852 94 1.79e-04 TTGCACACAC ACACGCAC GCGCTAAACT chr3L:10860116-10860236 104 1.79e-04 CCCATAATTG ACACGCAC ACAGGCAGA chr2L:5469550-5469670 99 2.16e-04 AGTGCGAGTG CCACGCCG GCTGTGAGTT chr2L:3000268-3000388 68 2.16e-04 TTTGTCAGCG CTACGCCC ACCTTGCCCA chr2L:19134384-19134504 47 2.33e-04 TTATTTTTGT GCACGCAC ACAGCTGCAA chr2L:6234015-6234135 80 2.33e-04 TGGGCGTGGC GCACGCAC CAGCACGCGC chr3R:23133342-23133462 4 2.33e-04 gca gcacgcac gAGGGAGCGG chr3R:14557905-14558025 2 2.33e-04 C GCACGCAC TTCACTACTG chr2L:20917112-20917232 110 2.49e-04 acacacacac tcacgcac gca chr2L:14568848-14568968 4 2.87e-04 CCG ACCCGCCC CTACAGTCCC chrX:13189282-13189402 34 3.39e-04 ACCAAGCACA CAACGCAC TCATTCAGCG chrX:18084910-18085030 23 4.41e-04 TTTCGTTGAT TCCCGCCC GCGGGGAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGCCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7993230-7993350 1.9e-05 39_[+1]_73 chr3L:7947961-7948081 1.9e-05 41_[+1]_71 chr3L:9024759-9024879 1.9e-05 59_[+1]_53 chr3L:26224096-26224216 1.9e-05 12_[+1]_100 chrX:5716095-5716215 1.9e-05 83_[+1]_29 chr3L:22724452-22724572 1.9e-05 99_[+1]_13 chr2L:21619235-21619355 1.9e-05 40_[+1]_72 chr3R:29773116-29773236 1.9e-05 23_[+1]_89 chr2L:3571613-3571733 1.9e-05 31_[+1]_81 chrX:3368622-3368742 1.9e-05 27_[+1]_85 chr2R:10102433-10102553 1.9e-05 8_[+1]_104 chr2L:2987269-2987389 1.9e-05 56_[+1]_56 chr2L:9459594-9459714 1.9e-05 44_[+1]_68 chrX:3140343-3140463 1.9e-05 80_[+1]_32 chr3L:21049481-21049601 1.9e-05 53_[+1]_59 chr3R:5025327-5025447 1.9e-05 72_[+1]_40 chr3R:31197016-31197136 1.9e-05 40_[+1]_72 chr3L:5844077-5844197 1.9e-05 15_[+1]_97 chr3L:1178163-1178283 1.9e-05 43_[+1]_69 chr2R:11890645-11890765 1.9e-05 3_[+1]_109 chr3R:10100599-10100719 1.9e-05 39_[+1]_73 chr3L:15347816-15347936 1.9e-05 45_[+1]_67 chr3R:24749585-24749705 1.9e-05 24_[+1]_88 chrX:16694091-16694211 1.9e-05 32_[+1]_80 chr3R:30820862-30820982 1.9e-05 44_[+1]_68 chr2L:19204725-19204845 1.9e-05 72_[+1]_40 chr2R:9109574-9109694 1.9e-05 56_[+1]_56 chr2R:8030958-8031078 1.9e-05 58_[+1]_54 chr3L:10581978-10582098 1.9e-05 58_[+1]_54 chr3L:12648552-12648672 1.9e-05 66_[+1]_46 chr3L:20399059-20399179 1.9e-05 77_[+1]_35 chr3R:5080652-5080772 1.9e-05 70_[+1]_42 chr2R:5744424-5744544 1.9e-05 31_[+1]_81 chr2R:15713004-15713124 1.9e-05 72_[+1]_40 chr3L:10691229-10691349 1.9e-05 48_[+1]_64 chr3L:10353655-10353775 1.9e-05 83_[+1]_29 chrX:22499759-22499879 1.9e-05 60_[+1]_52 chr2R:6529960-6530080 1.9e-05 52_[+1]_60 chrX:11440425-11440545 1.9e-05 46_[+1]_66 chr2L:19576366-19576486 1.9e-05 40_[+1]_72 chr3L:14275519-14275639 1.9e-05 61_[+1]_51 chr3R:16847381-16847501 1.9e-05 95_[+1]_17 chrX:3143537-3143657 1.9e-05 8_[+1]_104 chr2L:19866712-19866832 1.9e-05 21_[+1]_91 chr3L:7911346-7911466 1.9e-05 45_[+1]_67 chr2L:7519955-7520075 1.9e-05 45_[+1]_67 chrX:5888162-5888282 1.9e-05 72_[+1]_40 chr3R:5096078-5096198 1.9e-05 11_[+1]_101 chr2R:15913499-15913619 1.9e-05 26_[+1]_86 chr2L:19951501-19951621 1.9e-05 19_[+1]_93 chr4:448959-449079 1.9e-05 78_[+1]_34 chr3R:20004824-20004944 1.9e-05 50_[+1]_62 chr3R:29262850-29262970 1.9e-05 41_[+1]_71 chr3R:28888410-28888530 1.9e-05 80_[+1]_32 chr2L:11473995-11474115 1.9e-05 9_[+1]_103 chr2L:2458762-2458882 1.9e-05 5_[+1]_107 chr3L:18243754-18243874 1.9e-05 29_[+1]_83 chrX:5770931-5771051 1.9e-05 71_[+1]_41 chr3L:10748880-10749000 1.9e-05 26_[+1]_86 chr3L:900371-900491 1.9e-05 35_[+1]_77 chr2R:18674803-18674923 1.9e-05 51_[+1]_61 chr3R:16782542-16782662 1.9e-05 69_[+1]_43 chr2R:7158918-7159038 1.9e-05 68_[+1]_44 chr2R:6604546-6604666 1.9e-05 60_[+1]_52 chr2R:11892467-11892587 1.9e-05 51_[+1]_61 chr4:670183-670303 1.9e-05 3_[+1]_109 chr3R:21185152-21185272 1.9e-05 37_[+1]_75 chr3L:14333107-14333227 1.9e-05 40_[+1]_72 chr3L:10254304-10254424 1.9e-05 43_[+1]_69 chr2R:15760032-15760152 1.9e-05 31_[+1]_81 chr2R:11090393-11090513 1.9e-05 40_[+1]_72 chr2L:3547075-3547195 1.9e-05 38_[+1]_74 chr2R:15795458-15795578 1.9e-05 28_[+1]_84 chr3R:21822329-21822449 1.9e-05 13_[+1]_99 chr3L:18835010-18835130 1.9e-05 67_[+1]_45 chr2L:20923330-20923450 1.9e-05 85_[+1]_27 chr3L:17759117-17759237 1.9e-05 59_[+1]_53 chr3L:11254415-11254535 1.9e-05 43_[+1]_69 chr3R:18050243-18050363 1.9e-05 39_[+1]_73 chr3L:21048182-21048302 1.9e-05 51_[+1]_61 chrX:12576892-12577012 1.9e-05 13_[+1]_99 chr3L:6929738-6929858 1.9e-05 75_[+1]_37 chr2L:14472440-14472560 1.9e-05 45_[+1]_67 chr3L:3165589-3165709 1.9e-05 20_[+1]_92 chr3R:26876999-26877119 1.9e-05 81_[+1]_31 chr2L:15491310-15491430 1.9e-05 39_[+1]_73 chr2L:18387881-18388001 1.9e-05 17_[+1]_95 chr3L:18405725-18405845 1.9e-05 63_[+1]_49 chr2R:7396483-7396603 1.9e-05 41_[+1]_71 chr4:1232639-1232759 1.9e-05 56_[+1]_56 chr3L:9474364-9474484 1.9e-05 29_[+1]_83 chrX:17165883-17166003 1.9e-05 35_[+1]_77 chrX:3332546-3332666 5.3e-05 20_[+1]_92 chr2R:13560681-13560801 5.3e-05 19_[+1]_93 chrX:7659721-7659841 5.3e-05 11_[+1]_101 chr3R:16350580-16350700 5.3e-05 35_[+1]_77 chr2R:6162760-6162880 5.3e-05 106_[+1]_6 chr4:816775-816895 5.3e-05 69_[+1]_43 chr2L:17262278-17262398 7.2e-05 13_[+1]_99 chr2R:24540629-24540749 7.2e-05 76_[+1]_36 chr3L:10691017-10691137 7.2e-05 44_[+1]_68 chr3R:15616979-15617099 7.2e-05 42_[+1]_70 chr4:42373-42493 9e-05 78_[+1]_34 chr2R:8018919-8019039 9e-05 54_[+1]_58 chr2R:17719568-17719688 9e-05 70_[+1]_42 chr3L:4976642-4976762 0.00011 45_[+1]_67 chr3L:14633219-14633339 0.00011 2_[+1]_110 chr3L:13863479-13863599 0.00011 42_[+1]_70 chr3R:13797280-13797400 0.00011 12_[+1]_100 chr3L:7335143-7335263 0.00013 46_[+1]_66 chr3R:8707292-8707412 0.00013 49_[+1]_63 chr2L:4197720-4197840 0.00016 32_[+1]_80 chr2R:5982468-5982588 0.00016 58_[+1]_54 chrX:9134268-9134388 0.00016 1_[+1]_111 chrX:9156690-9156810 0.00016 65_[+1]_47 chr3L:5975131-5975251 0.00016 79_[+1]_33 chrX:14824978-14825098 0.00016 101_[+1]_11 chrX:21338519-21338639 0.00018 75_[+1]_37 chrX:13616187-13616307 0.00018 4_[+1]_108 chr2L:17383732-17383852 0.00018 93_[+1]_19 chr3L:10860116-10860236 0.00018 103_[+1]_9 chr2L:5469550-5469670 0.00022 98_[+1]_14 chr2L:3000268-3000388 0.00022 67_[+1]_45 chr2L:19134384-19134504 0.00023 46_[+1]_66 chr2L:6234015-6234135 0.00023 79_[+1]_33 chr3R:23133342-23133462 0.00023 3_[+1]_109 chr3R:14557905-14558025 0.00023 1_[+1]_111 chr2L:20917112-20917232 0.00025 109_[+1]_3 chr2L:14568848-14568968 0.00029 3_[+1]_109 chrX:13189282-13189402 0.00034 33_[+1]_79 chrX:18084910-18085030 0.00044 22_[+1]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGCCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACGCCC width=8 seqs=131 chr2L:7993230-7993350 ( 40) CCACGCCC 1 chr3L:7947961-7948081 ( 42) CCACGCCC 1 chr3L:9024759-9024879 ( 60) CCACGCCC 1 chr3L:26224096-26224216 ( 13) CCACGCCC 1 chrX:5716095-5716215 ( 84) CCACGCCC 1 chr3L:22724452-22724572 ( 100) CCACGCCC 1 chr2L:21619235-21619355 ( 41) CCACGCCC 1 chr3R:29773116-29773236 ( 24) CCACGCCC 1 chr2L:3571613-3571733 ( 32) CCACGCCC 1 chrX:3368622-3368742 ( 28) CCACGCCC 1 chr2R:10102433-10102553 ( 9) CCACGCCC 1 chr2L:2987269-2987389 ( 57) CCACGCCC 1 chr2L:9459594-9459714 ( 45) CCACGCCC 1 chrX:3140343-3140463 ( 81) CCACGCCC 1 chr3L:21049481-21049601 ( 54) CCACGCCC 1 chr3R:5025327-5025447 ( 73) CCACGCCC 1 chr3R:31197016-31197136 ( 41) CCACGCCC 1 chr3L:5844077-5844197 ( 16) CCACGCCC 1 chr3L:1178163-1178283 ( 44) CCACGCCC 1 chr2R:11890645-11890765 ( 4) CCACGCCC 1 chr3R:10100599-10100719 ( 40) CCACGCCC 1 chr3L:15347816-15347936 ( 46) CCACGCCC 1 chr3R:24749585-24749705 ( 25) CCACGCCC 1 chrX:16694091-16694211 ( 33) CCACGCCC 1 chr3R:30820862-30820982 ( 45) CCACGCCC 1 chr2L:19204725-19204845 ( 73) CCACGCCC 1 chr2R:9109574-9109694 ( 57) CCACGCCC 1 chr2R:8030958-8031078 ( 59) CCACGCCC 1 chr3L:10581978-10582098 ( 59) CCACGCCC 1 chr3L:12648552-12648672 ( 67) CCACGCCC 1 chr3L:20399059-20399179 ( 78) CCACGCCC 1 chr3R:5080652-5080772 ( 71) CCACGCCC 1 chr2R:5744424-5744544 ( 32) CCACGCCC 1 chr2R:15713004-15713124 ( 73) CCACGCCC 1 chr3L:10691229-10691349 ( 49) CCACGCCC 1 chr3L:10353655-10353775 ( 84) CCACGCCC 1 chrX:22499759-22499879 ( 61) CCACGCCC 1 chr2R:6529960-6530080 ( 53) CCACGCCC 1 chrX:11440425-11440545 ( 47) CCACGCCC 1 chr2L:19576366-19576486 ( 41) CCACGCCC 1 chr3L:14275519-14275639 ( 62) CCACGCCC 1 chr3R:16847381-16847501 ( 96) CCACGCCC 1 chrX:3143537-3143657 ( 9) CCACGCCC 1 chr2L:19866712-19866832 ( 22) CCACGCCC 1 chr3L:7911346-7911466 ( 46) CCACGCCC 1 chr2L:7519955-7520075 ( 46) CCACGCCC 1 chrX:5888162-5888282 ( 73) CCACGCCC 1 chr3R:5096078-5096198 ( 12) CCACGCCC 1 chr2R:15913499-15913619 ( 27) CCACGCCC 1 chr2L:19951501-19951621 ( 20) CCACGCCC 1 chr4:448959-449079 ( 79) CCACGCCC 1 chr3R:20004824-20004944 ( 51) CCACGCCC 1 chr3R:29262850-29262970 ( 42) CCACGCCC 1 chr3R:28888410-28888530 ( 81) CCACGCCC 1 chr2L:11473995-11474115 ( 10) CCACGCCC 1 chr2L:2458762-2458882 ( 6) CCACGCCC 1 chr3L:18243754-18243874 ( 30) CCACGCCC 1 chrX:5770931-5771051 ( 72) CCACGCCC 1 chr3L:10748880-10749000 ( 27) CCACGCCC 1 chr3L:900371-900491 ( 36) CCACGCCC 1 chr2R:18674803-18674923 ( 52) CCACGCCC 1 chr3R:16782542-16782662 ( 70) CCACGCCC 1 chr2R:7158918-7159038 ( 69) CCACGCCC 1 chr2R:6604546-6604666 ( 61) CCACGCCC 1 chr2R:11892467-11892587 ( 52) CCACGCCC 1 chr4:670183-670303 ( 4) CCACGCCC 1 chr3R:21185152-21185272 ( 38) CCACGCCC 1 chr3L:14333107-14333227 ( 41) CCACGCCC 1 chr3L:10254304-10254424 ( 44) CCACGCCC 1 chr2R:15760032-15760152 ( 32) CCACGCCC 1 chr2R:11090393-11090513 ( 41) CCACGCCC 1 chr2L:3547075-3547195 ( 39) CCACGCCC 1 chr2R:15795458-15795578 ( 29) CCACGCCC 1 chr3R:21822329-21822449 ( 14) CCACGCCC 1 chr3L:18835010-18835130 ( 68) CCACGCCC 1 chr2L:20923330-20923450 ( 86) CCACGCCC 1 chr3L:17759117-17759237 ( 60) CCACGCCC 1 chr3L:11254415-11254535 ( 44) CCACGCCC 1 chr3R:18050243-18050363 ( 40) CCACGCCC 1 chr3L:21048182-21048302 ( 52) CCACGCCC 1 chrX:12576892-12577012 ( 14) CCACGCCC 1 chr3L:6929738-6929858 ( 76) CCACGCCC 1 chr2L:14472440-14472560 ( 46) CCACGCCC 1 chr3L:3165589-3165709 ( 21) CCACGCCC 1 chr3R:26876999-26877119 ( 82) CCACGCCC 1 chr2L:15491310-15491430 ( 40) CCACGCCC 1 chr2L:18387881-18388001 ( 18) CCACGCCC 1 chr3L:18405725-18405845 ( 64) CCACGCCC 1 chr2R:7396483-7396603 ( 42) CCACGCCC 1 chr4:1232639-1232759 ( 57) CCACGCCC 1 chr3L:9474364-9474484 ( 30) CCACGCCC 1 chrX:17165883-17166003 ( 36) CCACGCCC 1 chrX:3332546-3332666 ( 21) ACACGCCC 1 chr2R:13560681-13560801 ( 20) ACACGCCC 1 chrX:7659721-7659841 ( 12) ACACGCCC 1 chr3R:16350580-16350700 ( 36) ACACGCCC 1 chr2R:6162760-6162880 ( 107) CCACGCAC 1 chr4:816775-816895 ( 70) ACACGCCC 1 chr2L:17262278-17262398 ( 14) GCACGCCC 1 chr2R:24540629-24540749 ( 77) GCACGCCC 1 chr3L:10691017-10691137 ( 45) GCACGCCC 1 chr3R:15616979-15617099 ( 43) GCACGCCC 1 chr4:42373-42493 ( 79) TCACGCCC 1 chr2R:8018919-8019039 ( 55) TCACGCCC 1 chr2R:17719568-17719688 ( 71) TCACGCCC 1 chr3L:4976642-4976762 ( 46) CCCCGCCC 1 chr3L:14633219-14633339 ( 3) CCCCGCCC 1 chr3L:13863479-13863599 ( 43) CCCCGCCC 1 chr3R:13797280-13797400 ( 13) CCCCGCCC 1 chr3L:7335143-7335263 ( 47) CAACGCCC 1 chr3R:8707292-8707412 ( 50) CAACGCCC 1 chr2L:4197720-4197840 ( 33) CCACTCCC 1 chr2R:5982468-5982588 ( 59) CCATGCCC 1 chrX:9134268-9134388 ( 2) CCACTCCC 1 chrX:9156690-9156810 ( 66) CCATGCCC 1 chr3L:5975131-5975251 ( 80) CCATGCCC 1 chrX:14824978-14825098 ( 102) CCACTCCC 1 chrX:21338519-21338639 ( 76) ACACGCAC 1 chrX:13616187-13616307 ( 5) ACACGCAC 1 chr2L:17383732-17383852 ( 94) ACACGCAC 1 chr3L:10860116-10860236 ( 104) ACACGCAC 1 chr2L:5469550-5469670 ( 99) CCACGCCG 1 chr2L:3000268-3000388 ( 68) CTACGCCC 1 chr2L:19134384-19134504 ( 47) GCACGCAC 1 chr2L:6234015-6234135 ( 80) GCACGCAC 1 chr3R:23133342-23133462 ( 4) GCACGCAC 1 chr3R:14557905-14558025 ( 2) GCACGCAC 1 chr2L:20917112-20917232 ( 110) TCACGCAC 1 chr2L:14568848-14568968 ( 4) ACCCGCCC 1 chrX:13189282-13189402 ( 34) CAACGCAC 1 chrX:18084910-18085030 ( 23) TCCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGCCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.77263 E= 5.4e-169 -164 167 -208 -268 -337 190 -1368 -500 201 -250 -1368 -1368 -1368 191 -1368 -342 -1368 -1368 192 -342 -1368 195 -1368 -1368 -150 182 -1368 -1368 -1368 193 -507 -1368 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGCCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 131 E= 5.4e-169 0.076336 0.824427 0.061069 0.038168 0.022901 0.969466 0.000000 0.007634 0.954198 0.045802 0.000000 0.000000 0.000000 0.977099 0.000000 0.022901 0.000000 0.000000 0.977099 0.022901 0.000000 1.000000 0.000000 0.000000 0.083969 0.916031 0.000000 0.000000 0.000000 0.992366 0.007634 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGCCC MEME-1 regular expression -------------------------------------------------------------------------------- CCACGCCC -------------------------------------------------------------------------------- Time 7.35 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGTGG MEME-2 width = 8 sites = 112 llr = 1097 E-value = 6.3e-153 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGTGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C :::a:::: probability G aaa:a:99 matrix T :::::a:: bits 2.1 1.9 ***** 1.7 ******* 1.5 ******* Relative 1.2 ******** Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGTGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14030485-14030605 87 1.88e-05 GGAGGCAAGG GGGCGTGG CAGAGAGGCT chr2L:4197720-4197840 59 1.88e-05 GGGGCGTCAT GGGCGTGG GCGTGAGGGT chr3R:28629691-28629811 70 1.88e-05 ATGACGCCAT GGGCGTGG CATTGTGACG chr3L:5989844-5989964 107 1.88e-05 ACTGACAAGT GGGCGTGG TGGGGT chr3R:21855812-21855932 52 1.88e-05 gctgggcggt gggcgtgg cacgggggcg chr3R:15672625-15672745 48 1.88e-05 TTGTGGCTGT GGGCGTGG CCGGAGGAGT chr3R:30888663-30888783 54 1.88e-05 AGCCCAAAAG GGGCGTGG CAGCGGCGAA chr2L:6821757-6821877 6 1.88e-05 AAAGG GGGCGTGG CCACGAGAAT chr2L:11224807-11224927 59 1.88e-05 GCGAGTTGGG GGGCGTGG CCATTACTCA chr3R:12369265-12369385 91 1.88e-05 GCGCCCCGCG GGGCGTGG CAAGGTGGGg chrX:17313481-17313601 105 1.88e-05 CAGTTTAAGG GGGCGTGG CCTGGCCA chr3R:6963532-6963652 51 1.88e-05 CCCTAATAAG GGGCGTGG CATCTCATCT chr2L:19336929-19337049 102 1.88e-05 GGGAACTCGG GGGCGTGG CTGCCACTTG chr2L:7310418-7310538 25 1.88e-05 TGTTCATAGT GGGCGTGG CAAGCGTCGC chr3L:19294102-19294222 49 1.88e-05 gttatagtgg gggcgtgg caacatttat chr3L:23022698-23022818 40 1.88e-05 gcgctagagt gggcgtgg caagtttttt chrX:9134268-9134388 92 1.88e-05 gtgtgtgtgt gggcgtgG AGAGCGGTGT chr2L:1436294-1436414 46 1.88e-05 CTCGAAAAGG GGGCGTGG CGAAGGTTTC chr3R:32006199-32006319 36 1.88e-05 tcaaaagtgt gggcgtgg ctgttttggg chr3L:3885809-3885929 94 1.88e-05 CATTCGCAGG GGGCGTGG CATTTGCATT chrX:5995896-5996016 51 1.88e-05 AGTCGCCTGG GGGCGTGG CAGGTCTCGA chr3R:9064803-9064923 31 1.88e-05 GGGCGGTGGA GGGCGTGG CAAAGGTAGC chrX:9586236-9586356 84 1.88e-05 CGGACCGCGT GGGCGTGG CACAGGGGGC chr2R:9419731-9419851 66 1.88e-05 GTATAAAAGG GGGCGTGG CAGGAGGCCT chrX:4672250-4672370 39 1.88e-05 CATAGGAAGT GGGCGTGG CGCGTTAATT chr2L:20917112-20917232 61 1.88e-05 CTGCCCAAGG GGGCGTGG CCGGGGAGGC chrX:6853591-6853711 82 1.88e-05 TTGGAAAAGT GGGCGTGG GCGGGGTTTC chr2R:8018919-8019039 36 1.88e-05 TTGGCAATGG GGGCGTGG CGAGGCCCGT chr3L:22932909-22933029 18 1.88e-05 acataagtgt gggcgtgg cagctttggg chr3R:15617974-15618094 24 1.88e-05 CCTGGGATGG GGGCGTGG TCGTGTGTGT chr2L:4057014-4057134 61 1.88e-05 ATGGGCGTGG GGGCGTGG CAACATGCTG chrX:13231267-13231387 72 1.88e-05 ATGTGCTGGT GGGCGTGG CATGTCAAGG chr3L:128734-128854 66 1.88e-05 TTATAGATGG GGGCGTGG CACTGATGCA chr2L:14568848-14568968 84 1.88e-05 AACAAACAAG gggcgtgg cacgggggca chr3R:23038708-23038828 92 1.88e-05 CCTTTCACGG GGGCGTGG CAACGAGCTA chr3R:22044633-22044753 50 1.88e-05 ataggggcag gggcgtgg caCTACCTGG chr3R:5300704-5300824 59 1.88e-05 CCCTAATAGA GGGCGTGG GCATTGTGGT chr2L:3372663-3372783 100 1.88e-05 GGGCGTGCGG GGGCGTGG CAACTCACAT chr2R:5987298-5987418 64 1.88e-05 gagagaggat gggcgtgg ccacagtgtt chrX:13616187-13616307 63 1.88e-05 CCGCGCCAGG gggcgtgg gcggcagtgg chr2L:6234015-6234135 57 1.88e-05 GCCGGAACAA GGGCGTGG CCAGGTGGGC chrX:8659486-8659606 101 1.88e-05 ATTCGCAAAT GGGCGTGG CACTTAGGGG chr3L:17409699-17409819 66 1.88e-05 GGCGGTAGGT GGGCGTGG CCGGGGGCTT chr2R:19270926-19271046 104 1.88e-05 TACTTAACGG GGGCGTGG TCGTCGGCT chr3L:3514647-3514767 88 1.88e-05 GGCGGGCAGT GGGCGTGG CAGCAGCAAC chr3R:21616050-21616170 34 1.88e-05 ATGCATGTGT GGGCGTGG CAGCGGAGGG chr2L:9252609-9252729 56 1.88e-05 GTGGCGGAGG GGGCGTGG CCCTCGATGG chr3R:23133342-23133462 45 1.88e-05 CTGTCGGCGG GGGCGTGG CATGCGGGCG chr4:829270-829390 97 1.88e-05 gtcgttagat gggcgtgg caaaataaat chr3R:20004824-20004944 43 1.88e-05 CATCGGCAGG GGGCGTGG CCACGCCCTG chr2L:5469550-5469670 45 1.88e-05 CGGCCAAAGG GGGCGTGG CACGTGCACC chr2R:24514548-24514668 86 1.88e-05 TGGTGCAGGG GGGCGTGG CTAGGCTCGG chr2R:14005728-14005848 98 1.88e-05 CAAATTTCGG GGGCGTGG CTTTTGGGCG chr2L:11516263-11516383 16 1.88e-05 GGGCGGGAGT GGGCGTGG GTAGGCAGTA chr3L:20792884-20793004 58 1.88e-05 CGCGGGCGGT GGGCGTGG CACTCGGCAG chr3R:14557905-14558025 48 1.88e-05 CAGCTGCTGG gggcgtgg cagagggcgc chr2R:20943864-20943984 57 1.88e-05 ATTGGTATGG GGGCGTGG CGGGGGCGGT chr3L:12063805-12063925 73 1.88e-05 CGCGAAGGGA GGGCGTGG GGATGCAGGG chr2L:5411479-5411599 50 1.88e-05 CATCAAAACG GGGCGTGG CAGTTGCTCG chr2R:20845444-20845564 57 1.88e-05 TGCGCAGTGT GGGCGTGG CAGGCGCATA chr3L:27082985-27083105 8 1.88e-05 taagagt gggcgtgg caaaaagttt chr3R:31462330-31462450 91 1.88e-05 ACTTGGCCAA GGGCGTGG CAGTCTGGCG chrX:4190364-4190484 60 1.88e-05 GGCAATTAGA GGGCGTGG CAGTTGGGCT chrX:17764166-17764286 75 1.88e-05 CAGGTTGAGT GGGCGTGG CGCTAGCCAT chrX:20251839-20251959 39 1.88e-05 GTGTGTGACT GGGCGTGG CACTGCCTTA chr3R:16228167-16228287 40 1.88e-05 GGATGGCAGT GGGCGTGG CACCCCGGCA chrX:14824978-14825098 77 1.88e-05 TTAAGGCGGG GGGCGTGG CAAGCCCAAG chrX:13735821-13735941 60 1.88e-05 CGCTTGGGGG GGGCGTGG CAGTTGGAGG chr2R:15657947-15658067 59 1.88e-05 TGGTCACAAG GGGCGTGG CAGCTGCCCC chr4:131145-131265 59 1.88e-05 ggcgctttgt gggcgtgg cagtttaggg chrX:10729596-10729716 97 1.88e-05 TCAGCGAAAG GGGCGTGG CACGTCGGca chr3R:5551934-5552054 87 1.88e-05 gagttagagt gggcgtgg caaaaaatct chrX:7424218-7424338 82 1.88e-05 CTTGGGGAGT GGGCGTGG CTGAAATTGC chr2R:15919091-15919211 69 1.88e-05 GCCGGGAAGG GGGCGTGG CTGGGGGCGC chr3R:5115552-5115672 68 1.88e-05 TGTCGCATGT GGGCGTGG CACGTACTTT chr3R:14675945-14676065 77 1.88e-05 GCAGCCCCGG GGGCGTGG CCAATGTGGG chrX:6986879-6986999 101 1.88e-05 AACTGGAATG GGGCGTGG CAGCGGCCCT chr3R:18507846-18507966 16 1.88e-05 AATGCCAGGT GGGCGTGG CTGGCTGAGG chr3R:9143894-9144014 41 1.88e-05 ATGACACGAG GGGCGTGG CATGTGGGCG chrX:18084910-18085030 66 1.88e-05 GCAGCGAAGG GGGCGTGG CGGCTGAGCG chr2L:16361551-16361671 61 1.88e-05 CAGCCCAGGT GGGCGTGG CACTGGGGTG chr2L:19313618-19313738 74 1.88e-05 TAGGCGAAGG GGGCGTGG CAGCGATTTG chr4:626386-626506 58 1.88e-05 ggcggtttta gggcgtgg caaacttgct chr3R:23043739-23043859 64 1.88e-05 CGCCCAGAGT GGGCGTGG CAGTTACTGC chr2R:5088420-5088540 49 3.60e-05 tcagaagtgt gggcgtga ccgatttggc chr4:797077-797197 46 3.60e-05 tcaaaagtgt gggcgtga ccgttttggc chr2R:5126911-5127031 38 3.60e-05 tttaaagtgt gggcgtga cagtttgggg chr4:234540-234660 48 3.60e-05 agaaacttgt gggcgtga ctgttttggg chr2L:10404192-10404312 81 3.60e-05 ttgaaagtgt gggcgtga ccgccttggc chr2L:22534169-22534289 35 3.60e-05 accaaagtgt gggcgtga ccggttcggc chr2L:16679201-16679321 80 3.60e-05 tcaaacgtgt gggcgtga ccggtttggc chr3R:23131662-23131782 88 5.33e-05 TGTGGGAAAG AGGCGTGG CATCTTGTAA chr2L:17383732-17383852 60 5.33e-05 TTTCCCGTGT AGGCGTGG CGACACTTCC chr3R:16934845-16934965 95 5.33e-05 GGGGGCGGGG AGGCGTGG TAGATGGCAC chr2L:11735797-11735917 64 5.33e-05 TGGGCGTAGG AGGCGTGG CTGGGGCAAT chr2R:21477472-21477592 82 5.33e-05 ATGCAAAAGG AGGCGTGG TACATTGGGT chr2R:10806686-10806806 21 7.11e-05 GTCGGCGGGA GGGCGTGT CTCGGGATGA chr3R:13360239-13360359 113 7.11e-05 GTTCGTAAAG GGGCGTGT chrX:13277748-13277868 30 7.11e-05 CCGCTGCTGT GGGCGTGT CTGCAAGTGT chr3L:15756067-15756187 61 7.11e-05 TTTCAAATTG GGGCGTGT CCGGCAGGAG chr3L:11772838-11772958 82 8.84e-05 CGGGACAGGT GGGCGTAG TAACTATTTT chr2R:11890645-11890765 30 8.84e-05 ACTCACCAGG GGGCGTAG AACATGACCA chr3L:14275519-14275639 111 8.84e-05 AACACCAGAC GGGCGTAG AA chr3L:1102601-1102721 67 1.08e-04 AAGGGGCGGA GGGCGGGG CACTATCGTT chr3R:21347536-21347656 93 1.08e-04 CAGCCAAAGG GGGCGGGG CGGTCGAACG chr3R:31712893-31713013 59 1.08e-04 GGGCGCTGGG GGGCGGGG CAGTCGGTGG chr2R:13039045-13039165 64 1.26e-04 ACTGAAAAAG GGGCGTTG GGCGGTGGGA chr3R:31086551-31086671 100 1.26e-04 GATTTTTCGG GGGCGTTG GCAATGTGGG chr2R:5982468-5982588 42 1.64e-04 GAGTCGGAGT GGGCGTGC CACAAATCCC chr2R:21870970-21871090 108 1.64e-04 GCGAACAAGG GGGCGTCG TGTGG chrX:16694091-16694211 80 1.98e-04 TTGGCTGAGC GGGAGTGG CGGGGGCGGC chr3R:26876999-26877119 107 1.98e-04 CGCCTCCGGG GGGCATGG TCGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGTGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14030485-14030605 1.9e-05 86_[+2]_26 chr2L:4197720-4197840 1.9e-05 58_[+2]_54 chr3R:28629691-28629811 1.9e-05 69_[+2]_43 chr3L:5989844-5989964 1.9e-05 106_[+2]_6 chr3R:21855812-21855932 1.9e-05 51_[+2]_61 chr3R:15672625-15672745 1.9e-05 47_[+2]_65 chr3R:30888663-30888783 1.9e-05 53_[+2]_59 chr2L:6821757-6821877 1.9e-05 5_[+2]_107 chr2L:11224807-11224927 1.9e-05 58_[+2]_54 chr3R:12369265-12369385 1.9e-05 90_[+2]_22 chrX:17313481-17313601 1.9e-05 104_[+2]_8 chr3R:6963532-6963652 1.9e-05 50_[+2]_62 chr2L:19336929-19337049 1.9e-05 101_[+2]_11 chr2L:7310418-7310538 1.9e-05 24_[+2]_88 chr3L:19294102-19294222 1.9e-05 48_[+2]_64 chr3L:23022698-23022818 1.9e-05 39_[+2]_73 chrX:9134268-9134388 1.9e-05 91_[+2]_21 chr2L:1436294-1436414 1.9e-05 45_[+2]_67 chr3R:32006199-32006319 1.9e-05 35_[+2]_77 chr3L:3885809-3885929 1.9e-05 93_[+2]_19 chrX:5995896-5996016 1.9e-05 50_[+2]_62 chr3R:9064803-9064923 1.9e-05 30_[+2]_82 chrX:9586236-9586356 1.9e-05 83_[+2]_29 chr2R:9419731-9419851 1.9e-05 65_[+2]_47 chrX:4672250-4672370 1.9e-05 38_[+2]_74 chr2L:20917112-20917232 1.9e-05 60_[+2]_52 chrX:6853591-6853711 1.9e-05 81_[+2]_31 chr2R:8018919-8019039 1.9e-05 35_[+2]_77 chr3L:22932909-22933029 1.9e-05 17_[+2]_95 chr3R:15617974-15618094 1.9e-05 23_[+2]_89 chr2L:4057014-4057134 1.9e-05 60_[+2]_52 chrX:13231267-13231387 1.9e-05 71_[+2]_41 chr3L:128734-128854 1.9e-05 65_[+2]_47 chr2L:14568848-14568968 1.9e-05 83_[+2]_29 chr3R:23038708-23038828 1.9e-05 91_[+2]_21 chr3R:22044633-22044753 1.9e-05 49_[+2]_63 chr3R:5300704-5300824 1.9e-05 58_[+2]_54 chr2L:3372663-3372783 1.9e-05 99_[+2]_13 chr2R:5987298-5987418 1.9e-05 63_[+2]_49 chrX:13616187-13616307 1.9e-05 62_[+2]_50 chr2L:6234015-6234135 1.9e-05 56_[+2]_56 chrX:8659486-8659606 1.9e-05 100_[+2]_12 chr3L:17409699-17409819 1.9e-05 65_[+2]_47 chr2R:19270926-19271046 1.9e-05 103_[+2]_9 chr3L:3514647-3514767 1.9e-05 87_[+2]_25 chr3R:21616050-21616170 1.9e-05 33_[+2]_79 chr2L:9252609-9252729 1.9e-05 55_[+2]_57 chr3R:23133342-23133462 1.9e-05 44_[+2]_68 chr4:829270-829390 1.9e-05 96_[+2]_16 chr3R:20004824-20004944 1.9e-05 42_[+2]_70 chr2L:5469550-5469670 1.9e-05 44_[+2]_68 chr2R:24514548-24514668 1.9e-05 85_[+2]_27 chr2R:14005728-14005848 1.9e-05 97_[+2]_15 chr2L:11516263-11516383 1.9e-05 15_[+2]_97 chr3L:20792884-20793004 1.9e-05 57_[+2]_55 chr3R:14557905-14558025 1.9e-05 47_[+2]_65 chr2R:20943864-20943984 1.9e-05 56_[+2]_56 chr3L:12063805-12063925 1.9e-05 72_[+2]_40 chr2L:5411479-5411599 1.9e-05 49_[+2]_63 chr2R:20845444-20845564 1.9e-05 56_[+2]_56 chr3L:27082985-27083105 1.9e-05 7_[+2]_105 chr3R:31462330-31462450 1.9e-05 90_[+2]_22 chrX:4190364-4190484 1.9e-05 59_[+2]_53 chrX:17764166-17764286 1.9e-05 74_[+2]_38 chrX:20251839-20251959 1.9e-05 38_[+2]_74 chr3R:16228167-16228287 1.9e-05 39_[+2]_73 chrX:14824978-14825098 1.9e-05 76_[+2]_36 chrX:13735821-13735941 1.9e-05 59_[+2]_53 chr2R:15657947-15658067 1.9e-05 58_[+2]_54 chr4:131145-131265 1.9e-05 58_[+2]_54 chrX:10729596-10729716 1.9e-05 96_[+2]_16 chr3R:5551934-5552054 1.9e-05 86_[+2]_26 chrX:7424218-7424338 1.9e-05 81_[+2]_31 chr2R:15919091-15919211 1.9e-05 68_[+2]_44 chr3R:5115552-5115672 1.9e-05 67_[+2]_45 chr3R:14675945-14676065 1.9e-05 76_[+2]_36 chrX:6986879-6986999 1.9e-05 100_[+2]_12 chr3R:18507846-18507966 1.9e-05 15_[+2]_97 chr3R:9143894-9144014 1.9e-05 40_[+2]_72 chrX:18084910-18085030 1.9e-05 65_[+2]_47 chr2L:16361551-16361671 1.9e-05 60_[+2]_52 chr2L:19313618-19313738 1.9e-05 73_[+2]_39 chr4:626386-626506 1.9e-05 57_[+2]_55 chr3R:23043739-23043859 1.9e-05 63_[+2]_49 chr2R:5088420-5088540 3.6e-05 48_[+2]_64 chr4:797077-797197 3.6e-05 45_[+2]_67 chr2R:5126911-5127031 3.6e-05 37_[+2]_75 chr4:234540-234660 3.6e-05 47_[+2]_65 chr2L:10404192-10404312 3.6e-05 80_[+2]_32 chr2L:22534169-22534289 3.6e-05 34_[+2]_78 chr2L:16679201-16679321 3.6e-05 79_[+2]_33 chr3R:23131662-23131782 5.3e-05 87_[+2]_25 chr2L:17383732-17383852 5.3e-05 59_[+2]_53 chr3R:16934845-16934965 5.3e-05 94_[+2]_18 chr2L:11735797-11735917 5.3e-05 63_[+2]_49 chr2R:21477472-21477592 5.3e-05 81_[+2]_31 chr2R:10806686-10806806 7.1e-05 20_[+2]_92 chr3R:13360239-13360359 7.1e-05 112_[+2] chrX:13277748-13277868 7.1e-05 29_[+2]_83 chr3L:15756067-15756187 7.1e-05 60_[+2]_52 chr3L:11772838-11772958 8.8e-05 81_[+2]_31 chr2R:11890645-11890765 8.8e-05 29_[+2]_83 chr3L:14275519-14275639 8.8e-05 110_[+2]_2 chr3L:1102601-1102721 0.00011 66_[+2]_46 chr3R:21347536-21347656 0.00011 92_[+2]_20 chr3R:31712893-31713013 0.00011 58_[+2]_54 chr2R:13039045-13039165 0.00013 63_[+2]_49 chr3R:31086551-31086671 0.00013 99_[+2]_13 chr2R:5982468-5982588 0.00016 41_[+2]_71 chr2R:21870970-21871090 0.00016 107_[+2]_5 chrX:16694091-16694211 0.0002 79_[+2]_33 chr3R:26876999-26877119 0.0002 106_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGTGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGTGG width=8 seqs=112 chr2R:14030485-14030605 ( 87) GGGCGTGG 1 chr2L:4197720-4197840 ( 59) GGGCGTGG 1 chr3R:28629691-28629811 ( 70) GGGCGTGG 1 chr3L:5989844-5989964 ( 107) GGGCGTGG 1 chr3R:21855812-21855932 ( 52) GGGCGTGG 1 chr3R:15672625-15672745 ( 48) GGGCGTGG 1 chr3R:30888663-30888783 ( 54) GGGCGTGG 1 chr2L:6821757-6821877 ( 6) GGGCGTGG 1 chr2L:11224807-11224927 ( 59) GGGCGTGG 1 chr3R:12369265-12369385 ( 91) GGGCGTGG 1 chrX:17313481-17313601 ( 105) GGGCGTGG 1 chr3R:6963532-6963652 ( 51) GGGCGTGG 1 chr2L:19336929-19337049 ( 102) GGGCGTGG 1 chr2L:7310418-7310538 ( 25) GGGCGTGG 1 chr3L:19294102-19294222 ( 49) GGGCGTGG 1 chr3L:23022698-23022818 ( 40) GGGCGTGG 1 chrX:9134268-9134388 ( 92) GGGCGTGG 1 chr2L:1436294-1436414 ( 46) GGGCGTGG 1 chr3R:32006199-32006319 ( 36) GGGCGTGG 1 chr3L:3885809-3885929 ( 94) GGGCGTGG 1 chrX:5995896-5996016 ( 51) GGGCGTGG 1 chr3R:9064803-9064923 ( 31) GGGCGTGG 1 chrX:9586236-9586356 ( 84) GGGCGTGG 1 chr2R:9419731-9419851 ( 66) GGGCGTGG 1 chrX:4672250-4672370 ( 39) GGGCGTGG 1 chr2L:20917112-20917232 ( 61) GGGCGTGG 1 chrX:6853591-6853711 ( 82) GGGCGTGG 1 chr2R:8018919-8019039 ( 36) GGGCGTGG 1 chr3L:22932909-22933029 ( 18) GGGCGTGG 1 chr3R:15617974-15618094 ( 24) GGGCGTGG 1 chr2L:4057014-4057134 ( 61) GGGCGTGG 1 chrX:13231267-13231387 ( 72) GGGCGTGG 1 chr3L:128734-128854 ( 66) GGGCGTGG 1 chr2L:14568848-14568968 ( 84) GGGCGTGG 1 chr3R:23038708-23038828 ( 92) GGGCGTGG 1 chr3R:22044633-22044753 ( 50) GGGCGTGG 1 chr3R:5300704-5300824 ( 59) GGGCGTGG 1 chr2L:3372663-3372783 ( 100) GGGCGTGG 1 chr2R:5987298-5987418 ( 64) GGGCGTGG 1 chrX:13616187-13616307 ( 63) GGGCGTGG 1 chr2L:6234015-6234135 ( 57) GGGCGTGG 1 chrX:8659486-8659606 ( 101) GGGCGTGG 1 chr3L:17409699-17409819 ( 66) GGGCGTGG 1 chr2R:19270926-19271046 ( 104) GGGCGTGG 1 chr3L:3514647-3514767 ( 88) GGGCGTGG 1 chr3R:21616050-21616170 ( 34) GGGCGTGG 1 chr2L:9252609-9252729 ( 56) GGGCGTGG 1 chr3R:23133342-23133462 ( 45) GGGCGTGG 1 chr4:829270-829390 ( 97) GGGCGTGG 1 chr3R:20004824-20004944 ( 43) GGGCGTGG 1 chr2L:5469550-5469670 ( 45) GGGCGTGG 1 chr2R:24514548-24514668 ( 86) GGGCGTGG 1 chr2R:14005728-14005848 ( 98) GGGCGTGG 1 chr2L:11516263-11516383 ( 16) GGGCGTGG 1 chr3L:20792884-20793004 ( 58) GGGCGTGG 1 chr3R:14557905-14558025 ( 48) GGGCGTGG 1 chr2R:20943864-20943984 ( 57) GGGCGTGG 1 chr3L:12063805-12063925 ( 73) GGGCGTGG 1 chr2L:5411479-5411599 ( 50) GGGCGTGG 1 chr2R:20845444-20845564 ( 57) GGGCGTGG 1 chr3L:27082985-27083105 ( 8) GGGCGTGG 1 chr3R:31462330-31462450 ( 91) GGGCGTGG 1 chrX:4190364-4190484 ( 60) GGGCGTGG 1 chrX:17764166-17764286 ( 75) GGGCGTGG 1 chrX:20251839-20251959 ( 39) GGGCGTGG 1 chr3R:16228167-16228287 ( 40) GGGCGTGG 1 chrX:14824978-14825098 ( 77) GGGCGTGG 1 chrX:13735821-13735941 ( 60) GGGCGTGG 1 chr2R:15657947-15658067 ( 59) GGGCGTGG 1 chr4:131145-131265 ( 59) GGGCGTGG 1 chrX:10729596-10729716 ( 97) GGGCGTGG 1 chr3R:5551934-5552054 ( 87) GGGCGTGG 1 chrX:7424218-7424338 ( 82) GGGCGTGG 1 chr2R:15919091-15919211 ( 69) GGGCGTGG 1 chr3R:5115552-5115672 ( 68) GGGCGTGG 1 chr3R:14675945-14676065 ( 77) GGGCGTGG 1 chrX:6986879-6986999 ( 101) GGGCGTGG 1 chr3R:18507846-18507966 ( 16) GGGCGTGG 1 chr3R:9143894-9144014 ( 41) GGGCGTGG 1 chrX:18084910-18085030 ( 66) GGGCGTGG 1 chr2L:16361551-16361671 ( 61) GGGCGTGG 1 chr2L:19313618-19313738 ( 74) GGGCGTGG 1 chr4:626386-626506 ( 58) GGGCGTGG 1 chr3R:23043739-23043859 ( 64) GGGCGTGG 1 chr2R:5088420-5088540 ( 49) GGGCGTGA 1 chr4:797077-797197 ( 46) GGGCGTGA 1 chr2R:5126911-5127031 ( 38) GGGCGTGA 1 chr4:234540-234660 ( 48) GGGCGTGA 1 chr2L:10404192-10404312 ( 81) GGGCGTGA 1 chr2L:22534169-22534289 ( 35) GGGCGTGA 1 chr2L:16679201-16679321 ( 80) GGGCGTGA 1 chr3R:23131662-23131782 ( 88) AGGCGTGG 1 chr2L:17383732-17383852 ( 60) AGGCGTGG 1 chr3R:16934845-16934965 ( 95) AGGCGTGG 1 chr2L:11735797-11735917 ( 64) AGGCGTGG 1 chr2R:21477472-21477592 ( 82) AGGCGTGG 1 chr2R:10806686-10806806 ( 21) GGGCGTGT 1 chr3R:13360239-13360359 ( 113) GGGCGTGT 1 chrX:13277748-13277868 ( 30) GGGCGTGT 1 chr3L:15756067-15756187 ( 61) GGGCGTGT 1 chr3L:11772838-11772958 ( 82) GGGCGTAG 1 chr2R:11890645-11890765 ( 30) GGGCGTAG 1 chr3L:14275519-14275639 ( 111) GGGCGTAG 1 chr3L:1102601-1102721 ( 67) GGGCGGGG 1 chr3R:21347536-21347656 ( 93) GGGCGGGG 1 chr3R:31712893-31713013 ( 59) GGGCGGGG 1 chr2R:13039045-13039165 ( 64) GGGCGTTG 1 chr3R:31086551-31086671 ( 100) GGGCGTTG 1 chr2R:5982468-5982588 ( 42) GGGCGTGC 1 chr2R:21870970-21871090 ( 108) GGGCGTCG 1 chrX:16694091-16694211 ( 80) GGGAGTGG 1 chr3R:26876999-26877119 ( 107) GGGCATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGTGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.58057 E= 6.3e-153 -241 -1345 189 -1345 -1345 -1345 196 -1345 -1345 -1345 196 -1345 -473 193 -1345 -1345 -473 -1345 194 -1345 -1345 -1345 -327 199 -315 -486 188 -378 -192 -486 179 -278 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGTGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 112 E= 6.3e-153 0.044643 0.000000 0.955357 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.008929 0.991071 0.000000 0.000000 0.008929 0.000000 0.991071 0.000000 0.000000 0.000000 0.026786 0.973214 0.026786 0.008929 0.946429 0.017857 0.062500 0.008929 0.892857 0.035714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGTGG MEME-2 regular expression -------------------------------------------------------------------------------- GGGCGTGG -------------------------------------------------------------------------------- Time 13.45 secs. ******************************************************************************** ******************************************************************************** MOTIF MCGCCCAC MEME-3 width = 8 sites = 44 llr = 390 E-value = 4.9e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCGCCCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5:::1:8: pos.-specific C 5a:a9a3a probability G ::a::::: matrix T 1::::::: bits 2.1 1.9 *** * 1.7 *** * * 1.5 ***** * Relative 1.2 ******* Entropy 1.0 ******* (12.8 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCCAC consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:26224096-26224216 52 1.72e-05 caaactggtc acgcccac acttatgaac chr2L:21619235-21619355 81 1.72e-05 caaaacggtc acgcccac acttttaggc chrX:3368622-3368742 71 1.72e-05 CCAATGCGCC ACGCCCAC CCAGCCGTGT chr3L:21049481-21049601 44 1.72e-05 CCGCCTTCAA ACGCCCAC GTCCACGCCC chr3L:3097408-3097528 42 1.72e-05 ATATGAAGTT ACGCCCAC ACATCAATAT chr3L:10860116-10860236 51 1.72e-05 CCTCCCAGTG ACGCCCAC TCGATTAATG chr3L:17759117-17759237 87 1.72e-05 GCACAACTGG ACGCCCAC TTGAAGCGGG chr2L:3000268-3000388 50 1.72e-05 CTCCTCGGGA ACGCCCAC TTTGTCAGCG chr3R:26876999-26877119 72 1.72e-05 GTTTAGGCCC ACGCCCAC CGCCACGCCC chr2R:7396483-7396603 70 1.72e-05 caaaagtgcc acgcccac acttttgaaa chr3L:9024759-9024879 71 3.61e-05 CACGCCCCTT CCGCCCAC TTCTCTGAGG chr2L:9459594-9459714 54 3.61e-05 GCCACGCCCA CCGCCCAC AGCTGCCCAC chr2R:5982468-5982588 19 3.61e-05 GCTGGACGAC CCGCCCAC CATCGGAGTC chrX:13189282-13189402 6 3.61e-05 CCCAA CCGCCCAC TTTTCACCCA chr3R:10100599-10100719 57 3.61e-05 CCCACCGCTG CCGCCCAC AAGAGCTTTT chrX:5995896-5996016 32 3.61e-05 TCGCCTGTCA CCGCCCAC GAGTCGCCTG chr3R:5080652-5080772 89 3.61e-05 ATCAGCGCCC CCGCCCAC GACCCAGACA chr2R:15713004-15713124 48 3.61e-05 GGCAATccat ccgcccac attccaccgc chr3L:20498219-20498339 113 3.61e-05 TGCCGAGCCA CCGCCCAC chr4:448959-449079 66 3.61e-05 gccctaaaaa ccgcccac aactgccacg chr3R:29262850-29262970 61 3.61e-05 CGGCCGCCAC CCGCCCAC TTAGTGCGTA chr3R:5084533-5084653 93 3.61e-05 cgccccgcct ccgcccac cgacgccgac chr2L:18387881-18388001 37 3.61e-05 CTGTGCTCGC CCGCCCAC CAGAAAAAAT chr3L:18405725-18405845 78 3.61e-05 GCCCCTCCCA CCGCCCAC TCGCATGATT chr2R:24540629-24540749 92 5.50e-05 CCCCCTTATG ACGCCCCC TGTGACGCGT chr3L:5844077-5844197 30 5.50e-05 GCCCCGCTGC ACGCCCCC CCCCAAAATT chr3R:16350580-16350700 71 5.50e-05 ACCACATGAA ACGCCCCC TACACATCCA chr2R:6604546-6604666 74 5.50e-05 CGCCCACGAC ACGCCCCC GTTCACCGCC chr2R:15760032-15760152 54 5.50e-05 AGACCGAGAC ACGCCCCC TTTGGAGCAC chr3R:29773116-29773236 94 7.57e-05 CAAAGATTCC CCGCCCCC CAAAGGAAAT chr3L:14633219-14633339 29 7.57e-05 GCCGCCCTTG CCGCCCCC AATCCGGCGG chr3L:10691229-10691349 38 7.57e-05 AAGAAGATGA CCGCCCCC GGGCCACGCC chr2L:14568848-14568968 23 7.57e-05 TACAGTCCCA CCGCCCCC TTTTCTGCTT chr3R:18050243-18050363 28 7.57e-05 CTCTGTTCTC CCGCCCCC GTCGCCACGC chr2R:6529960-6530080 33 9.35e-05 CCATTCTCCC TCGCCCAC GGCCCTTGCG chr3R:21185152-21185272 70 9.35e-05 CCCGCCCGTC TCGCCCAC CAATAAAACG chrX:12576892-12577012 30 9.35e-05 CCATTTGCCC TCGCCCAC CCCATTTTTC chr3L:1178163-1178283 112 1.09e-04 GCTCCTACAC ACGCACAC A chr3L:9474364-9474484 99 1.09e-04 CAACGAATTG ACGCACAC GGGATTGCAG chr2R:15795458-15795578 39 1.26e-04 CCACGCCCAC CCGCACAC ACACTGGCCC chr3L:11254415-11254535 17 1.43e-04 TTCGGCAGCC ACGCCCAT AGACCCAGTG chr2L:19951501-19951621 40 1.80e-04 gcctcagccc ccgcccaT GACCTACCTA chr3R:30820862-30820982 53 1.97e-04 GGCCACGCCC ACGCACCC GGCCTGGAAT chr2R:6162760-6162880 17 2.32e-04 Aaaaactgcc acacccac atttttaata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:26224096-26224216 1.7e-05 51_[+3]_61 chr2L:21619235-21619355 1.7e-05 80_[+3]_32 chrX:3368622-3368742 1.7e-05 70_[+3]_42 chr3L:21049481-21049601 1.7e-05 43_[+3]_69 chr3L:3097408-3097528 1.7e-05 41_[+3]_71 chr3L:10860116-10860236 1.7e-05 50_[+3]_62 chr3L:17759117-17759237 1.7e-05 86_[+3]_26 chr2L:3000268-3000388 1.7e-05 49_[+3]_63 chr3R:26876999-26877119 1.7e-05 71_[+3]_41 chr2R:7396483-7396603 1.7e-05 69_[+3]_43 chr3L:9024759-9024879 3.6e-05 70_[+3]_42 chr2L:9459594-9459714 3.6e-05 53_[+3]_59 chr2R:5982468-5982588 3.6e-05 18_[+3]_94 chrX:13189282-13189402 3.6e-05 5_[+3]_107 chr3R:10100599-10100719 3.6e-05 56_[+3]_56 chrX:5995896-5996016 3.6e-05 31_[+3]_81 chr3R:5080652-5080772 3.6e-05 88_[+3]_24 chr2R:15713004-15713124 3.6e-05 47_[+3]_65 chr3L:20498219-20498339 3.6e-05 112_[+3] chr4:448959-449079 3.6e-05 65_[+3]_47 chr3R:29262850-29262970 3.6e-05 60_[+3]_52 chr3R:5084533-5084653 3.6e-05 92_[+3]_20 chr2L:18387881-18388001 3.6e-05 36_[+3]_76 chr3L:18405725-18405845 3.6e-05 77_[+3]_35 chr2R:24540629-24540749 5.5e-05 91_[+3]_21 chr3L:5844077-5844197 5.5e-05 29_[+3]_83 chr3R:16350580-16350700 5.5e-05 70_[+3]_42 chr2R:6604546-6604666 5.5e-05 73_[+3]_39 chr2R:15760032-15760152 5.5e-05 53_[+3]_59 chr3R:29773116-29773236 7.6e-05 93_[+3]_19 chr3L:14633219-14633339 7.6e-05 28_[+3]_84 chr3L:10691229-10691349 7.6e-05 37_[+3]_75 chr2L:14568848-14568968 7.6e-05 22_[+3]_90 chr3R:18050243-18050363 7.6e-05 27_[+3]_85 chr2R:6529960-6530080 9.4e-05 32_[+3]_80 chr3R:21185152-21185272 9.4e-05 69_[+3]_43 chrX:12576892-12577012 9.4e-05 29_[+3]_83 chr3L:1178163-1178283 0.00011 111_[+3]_1 chr3L:9474364-9474484 0.00011 98_[+3]_14 chr2R:15795458-15795578 0.00013 38_[+3]_74 chr3L:11254415-11254535 0.00014 16_[+3]_96 chr2L:19951501-19951621 0.00018 39_[+3]_73 chr3R:30820862-30820982 0.0002 52_[+3]_60 chr2R:6162760-6162880 0.00023 16_[+3]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCGCCCAC width=8 seqs=44 chr3L:26224096-26224216 ( 52) ACGCCCAC 1 chr2L:21619235-21619355 ( 81) ACGCCCAC 1 chrX:3368622-3368742 ( 71) ACGCCCAC 1 chr3L:21049481-21049601 ( 44) ACGCCCAC 1 chr3L:3097408-3097528 ( 42) ACGCCCAC 1 chr3L:10860116-10860236 ( 51) ACGCCCAC 1 chr3L:17759117-17759237 ( 87) ACGCCCAC 1 chr2L:3000268-3000388 ( 50) ACGCCCAC 1 chr3R:26876999-26877119 ( 72) ACGCCCAC 1 chr2R:7396483-7396603 ( 70) ACGCCCAC 1 chr3L:9024759-9024879 ( 71) CCGCCCAC 1 chr2L:9459594-9459714 ( 54) CCGCCCAC 1 chr2R:5982468-5982588 ( 19) CCGCCCAC 1 chrX:13189282-13189402 ( 6) CCGCCCAC 1 chr3R:10100599-10100719 ( 57) CCGCCCAC 1 chrX:5995896-5996016 ( 32) CCGCCCAC 1 chr3R:5080652-5080772 ( 89) CCGCCCAC 1 chr2R:15713004-15713124 ( 48) CCGCCCAC 1 chr3L:20498219-20498339 ( 113) CCGCCCAC 1 chr4:448959-449079 ( 66) CCGCCCAC 1 chr3R:29262850-29262970 ( 61) CCGCCCAC 1 chr3R:5084533-5084653 ( 93) CCGCCCAC 1 chr2L:18387881-18388001 ( 37) CCGCCCAC 1 chr3L:18405725-18405845 ( 78) CCGCCCAC 1 chr2R:24540629-24540749 ( 92) ACGCCCCC 1 chr3L:5844077-5844197 ( 30) ACGCCCCC 1 chr3R:16350580-16350700 ( 71) ACGCCCCC 1 chr2R:6604546-6604666 ( 74) ACGCCCCC 1 chr2R:15760032-15760152 ( 54) ACGCCCCC 1 chr3R:29773116-29773236 ( 94) CCGCCCCC 1 chr3L:14633219-14633339 ( 29) CCGCCCCC 1 chr3L:10691229-10691349 ( 38) CCGCCCCC 1 chr2L:14568848-14568968 ( 23) CCGCCCCC 1 chr3R:18050243-18050363 ( 28) CCGCCCCC 1 chr2R:6529960-6530080 ( 33) TCGCCCAC 1 chr3R:21185152-21185272 ( 70) TCGCCCAC 1 chrX:12576892-12577012 ( 30) TCGCCCAC 1 chr3L:1178163-1178283 ( 112) ACGCACAC 1 chr3L:9474364-9474484 ( 99) ACGCACAC 1 chr2R:15795458-15795578 ( 39) CCGCACAC 1 chr3L:11254415-11254535 ( 17) ACGCCCAT 1 chr2L:19951501-19951621 ( 40) CCGCCCAT 1 chr3R:30820862-30820982 ( 53) ACGCACCC 1 chr2R:6162760-6162880 ( 17) ACACCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.87601 E= 4.9e-013 94 88 -1210 -185 -1210 195 -1210 -1210 -338 -1210 192 -1210 -1210 195 -1210 -1210 -138 181 -1210 -1210 -1210 195 -1210 -1210 166 -5 -1210 -1210 -1210 188 -1210 -243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 4.9e-013 0.454545 0.477273 0.000000 0.068182 0.000000 1.000000 0.000000 0.000000 0.022727 0.000000 0.977273 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.954545 0.000000 0.045455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCAC MEME-3 regular expression -------------------------------------------------------------------------------- [CA]CGCCC[AC]C -------------------------------------------------------------------------------- Time 19.33 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAWAA MEME-4 width = 8 sites = 32 llr = 296 E-value = 3.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAWAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaa79799 pos.-specific C :::3:::: probability G :::::::: matrix T ::::1311 bits 2.1 *** 1.9 *** 1.7 *** * 1.5 *** * ** Relative 1.2 ***** ** Entropy 1.0 ******** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:5126911-5127031 8 9.95e-06 aaaaatg aaaaaaaa tctaaacatt chr2L:6234015-6234135 106 9.95e-06 GCAGCTGGTA AAAAAAAA GGGGGAA chr2L:7519955-7520075 111 9.95e-06 TGCAGCGCaa aaaaaaaa ac chr4:234540-234660 6 9.95e-06 attaa aaaaaaaa ctgtgggtct chr2R:11892467-11892587 105 9.95e-06 ATTAACCGAG AAAAAAAA ACGTGCTT chr2L:16679201-16679321 61 9.95e-06 gaaaaaattt aaaaaaaa ttcaaacgtg chr3R:14675945-14676065 24 9.95e-06 CCCAAAAAAG AAAAAAAA TATTAATAGA chr4:626386-626506 13 9.95e-06 ctaaaagtat aaaaaaaa tgcacaagtg chr3R:32006199-32006319 10 2.02e-05 acaacgaag aaaaataa aaacaatttc chr3L:3097408-3097528 25 2.02e-05 AGAAGAAACT AAAAATAA TATGAAGTTA chr3R:29262850-29262970 105 2.02e-05 AAAAAATTTT AAAAATAA TTCCCAAA chr4:1028211-1028331 64 2.02e-05 aataaaatcg aaaaataa ttcttaagag chr3L:6929738-6929858 13 2.02e-05 GCTCAACTGA AAAAATAA TCGCTTACTG chr2L:18387881-18388001 49 2.02e-05 GCCCACCAGA AAAAATAA ACAAGAAGTG chr2R:18583152-18583272 70 3.12e-05 TCATATGTTT AAACAAAA AACGGTCAGC chr2L:3867637-3867757 97 3.12e-05 TAATAACAAT AAACAAAA ATTCACTGTA chr3R:5096078-5096198 111 3.12e-05 AAGGAGCGAA AAACAAAA CG chr3L:10748880-10749000 58 3.12e-05 CGGCTGCGGC AAACAAAA TTCAGCGGCA chr2R:15919091-15919211 38 3.12e-05 AGATAAACAC AAACAAAA CACTTGGCAC chr2L:18032921-18033041 88 3.12e-05 TCTTAAAATG AAACAAAA CCATATGCTT chr2R:7158918-7159038 38 4.25e-05 CCGAATGTGT AAACATAA TTTACTCCAA chr3R:31462330-31462450 27 4.25e-05 AGACCGAGTT AAACATAA CTTCAATAGA chr2R:5088420-5088540 21 6.30e-05 ataaaatgag aaaaaaat taaaaactgt chr3R:15672625-15672745 88 6.30e-05 GGTAGAGCTG AAAATAAA TGTTAGCAGT chr4:829270-829390 106 6.30e-05 tgggcgtggc aaaataaa tgtttga chr2R:21477472-21477592 17 6.30e-05 CCAAGAAAGG AAAATAAA CACAAACAGC chr3L:19294102-19294222 5 9.46e-05 tatt aaaaaata tcgtaacatt chr3L:23022698-23022818 97 9.46e-05 taaaatgatg aaaaatat cgaaaaattg chr2L:22534169-22534289 104 9.46e-05 gcaaatggcc aaaaatat atggttcaa chr3L:27082985-27083105 65 9.46e-05 taaaaatatg aaaaaata tcaacagatt chr3R:8707292-8707412 87 9.46e-05 CCACATGCCC AAAAATAT GCAACATTTT chr3L:17409699-17409819 106 1.17e-04 GGCACGGGCT AAACTAAA CTGCTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5126911-5127031 1e-05 7_[+4]_105 chr2L:6234015-6234135 1e-05 105_[+4]_7 chr2L:7519955-7520075 1e-05 110_[+4]_2 chr4:234540-234660 1e-05 5_[+4]_107 chr2R:11892467-11892587 1e-05 104_[+4]_8 chr2L:16679201-16679321 1e-05 60_[+4]_52 chr3R:14675945-14676065 1e-05 23_[+4]_89 chr4:626386-626506 1e-05 12_[+4]_100 chr3R:32006199-32006319 2e-05 9_[+4]_103 chr3L:3097408-3097528 2e-05 24_[+4]_88 chr3R:29262850-29262970 2e-05 104_[+4]_8 chr4:1028211-1028331 2e-05 63_[+4]_49 chr3L:6929738-6929858 2e-05 12_[+4]_100 chr2L:18387881-18388001 2e-05 48_[+4]_64 chr2R:18583152-18583272 3.1e-05 69_[+4]_43 chr2L:3867637-3867757 3.1e-05 96_[+4]_16 chr3R:5096078-5096198 3.1e-05 110_[+4]_2 chr3L:10748880-10749000 3.1e-05 57_[+4]_55 chr2R:15919091-15919211 3.1e-05 37_[+4]_75 chr2L:18032921-18033041 3.1e-05 87_[+4]_25 chr2R:7158918-7159038 4.2e-05 37_[+4]_75 chr3R:31462330-31462450 4.2e-05 26_[+4]_86 chr2R:5088420-5088540 6.3e-05 20_[+4]_92 chr3R:15672625-15672745 6.3e-05 87_[+4]_25 chr4:829270-829390 6.3e-05 105_[+4]_7 chr2R:21477472-21477592 6.3e-05 16_[+4]_96 chr3L:19294102-19294222 9.5e-05 4_[+4]_108 chr3L:23022698-23022818 9.5e-05 96_[+4]_16 chr2L:22534169-22534289 9.5e-05 103_[+4]_9 chr3L:27082985-27083105 9.5e-05 64_[+4]_48 chr3R:8707292-8707412 9.5e-05 86_[+4]_26 chr3L:17409699-17409819 0.00012 105_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAWAA width=8 seqs=32 chr2R:5126911-5127031 ( 8) AAAAAAAA 1 chr2L:6234015-6234135 ( 106) AAAAAAAA 1 chr2L:7519955-7520075 ( 111) AAAAAAAA 1 chr4:234540-234660 ( 6) AAAAAAAA 1 chr2R:11892467-11892587 ( 105) AAAAAAAA 1 chr2L:16679201-16679321 ( 61) AAAAAAAA 1 chr3R:14675945-14676065 ( 24) AAAAAAAA 1 chr4:626386-626506 ( 13) AAAAAAAA 1 chr3R:32006199-32006319 ( 10) AAAAATAA 1 chr3L:3097408-3097528 ( 25) AAAAATAA 1 chr3R:29262850-29262970 ( 105) AAAAATAA 1 chr4:1028211-1028331 ( 64) AAAAATAA 1 chr3L:6929738-6929858 ( 13) AAAAATAA 1 chr2L:18387881-18388001 ( 49) AAAAATAA 1 chr2R:18583152-18583272 ( 70) AAACAAAA 1 chr2L:3867637-3867757 ( 97) AAACAAAA 1 chr3R:5096078-5096198 ( 111) AAACAAAA 1 chr3L:10748880-10749000 ( 58) AAACAAAA 1 chr2R:15919091-15919211 ( 38) AAACAAAA 1 chr2L:18032921-18033041 ( 88) AAACAAAA 1 chr2R:7158918-7159038 ( 38) AAACATAA 1 chr3R:31462330-31462450 ( 27) AAACATAA 1 chr2R:5088420-5088540 ( 21) AAAAAAAT 1 chr3R:15672625-15672745 ( 88) AAAATAAA 1 chr4:829270-829390 ( 106) AAAATAAA 1 chr2R:21477472-21477592 ( 17) AAAATAAA 1 chr3L:19294102-19294222 ( 5) AAAAAATA 1 chr3L:23022698-23022818 ( 97) AAAAATAT 1 chr2L:22534169-22534289 ( 104) AAAAATAT 1 chr3L:27082985-27083105 ( 65) AAAAAATA 1 chr3R:8707292-8707412 ( 87) AAAAATAT 1 chr3L:17409699-17409819 ( 106) AAACTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 3.9e-007 208 -1164 -1164 -1164 208 -1164 -1164 -1164 208 -1164 -1164 -1164 160 12 -1164 -1164 188 -1164 -1164 -97 147 -1164 -1164 49 198 -1164 -1164 -197 188 -1164 -1164 -97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.9e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.718750 0.281250 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.656250 0.000000 0.000000 0.343750 0.937500 0.000000 0.000000 0.062500 0.875000 0.000000 0.000000 0.125000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAWAA MEME-4 regular expression -------------------------------------------------------------------------------- AAA[AC]A[AT]AA -------------------------------------------------------------------------------- Time 25.09 secs. ******************************************************************************** ******************************************************************************** MOTIF AMAHTTTT MEME-5 width = 8 sites = 48 llr = 404 E-value = 7.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMAHTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A a6a33::: pos.-specific C :4:4:::: probability G ::::::2: matrix T :::37a8a bits 2.1 * * * * 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.2 * * **** Entropy 1.0 *** **** (12.1 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACTTTT consensus C AA G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16655921-16656041 2 1.25e-05 T AAACTTTT ACCAAATTCA chr3L:26224096-26224216 3 1.25e-05 aa aaactttt tgccacgccc chr2L:19336929-19337049 20 1.25e-05 TTGGCCATAT AAACTTTT TAAATTATCA chr4:42373-42493 32 1.25e-05 ttagttgctt aaactttt tgccacgcct chr2L:5799563-5799683 48 1.25e-05 ACAGAACGAG AAACTTTT ACACTGGCCA chr2R:6162760-6162880 97 1.25e-05 tttcttaaaa aaactttt tgccacgcac chr4:670183-670303 44 1.25e-05 GTTCAGCTAA AAACTTTT TCGAAGACTA chr2L:20923330-20923450 76 1.25e-05 gatttgcaaa aaactttt tgccacgccc chr2R:9109574-9109694 108 3.56e-05 GACCCCGGTC AAATTTTT TTTAT chr2R:5744424-5744544 98 3.56e-05 tattatgtcg aaattttt tcatatttat chr3R:23038708-23038828 41 3.56e-05 AACGAAATGG AAATTTTT GGCGTCGCAT chr3R:29262850-29262970 97 3.56e-05 AAAATTCGAA AAAATTTT AAAAATAATT chr4:1028211-1028331 107 3.56e-05 gggtgTGGCA AAATTTTT GTGGTA chr4:448959-449079 87 4.93e-05 tgccacgccc acactttt aaaaaatgtt chr2R:15919091-15919211 108 4.93e-05 TGTGTAATCA ACACTTTT ATGTG chr2L:21619235-21619355 105 8.67e-05 aggccatttt acaatttt tttttcat chr3R:6963532-6963652 104 8.67e-05 CGCCGAGAAA ACAATTTT CTATTTCCG chr3L:19294102-19294222 18 8.67e-05 aaatatcgta acattttt aaaaagtgtg chrX:9156690-9156810 106 8.67e-05 TTTGCTAATT ACATTTTT ATAACTT chr3R:16350580-16350700 105 8.67e-05 TAGTTAATTT ACAATTTT GATAGACT chr2R:5126911-5127031 21 8.67e-05 aaaaatctaa acattttt ttaaagtgtg chr2R:5987298-5987418 98 8.67e-05 attcagataa aaacattt gtcaagagtg chr2R:15913499-15913619 112 8.67e-05 GAGGACAGGC ACAATTTT A chr3L:14333107-14333227 98 8.67e-05 GCTTTTGGGC AAACATTT CTCATAGGCT chr4:131145-131265 16 8.67e-05 taattcgaaa acattttt caaatgtata chr3R:8707292-8707412 98 8.67e-05 AAAATATGCA ACATTTTT TATATGTTTC chr4:816775-816895 20 8.67e-05 atttttttta acattttt attagtcttg chr2L:11224807-11224927 113 1.09e-04 AGTGCGTCAT AAAAATTT chr3L:23022698-23022818 69 1.09e-04 tcaaatcgat aaaaattt acaaggctaa chrX:7659721-7659841 35 1.09e-04 GCTGACATTA AAAAATTT CGTTGCATAC chr2L:22534169-22534289 8 1.09e-04 aatgaga aaaaattt aaaaattgta chr3R:5551934-5552054 31 1.09e-04 taaaattgag aaaaattt gcttgaatgt chr2L:16679201-16679321 53 1.09e-04 tataatgtga aaaaattt aaaaaaaatt chrX:6091276-6091396 36 1.22e-04 GGCGGTGGAA AAACTTGT CACGAGATTA chr4:234540-234660 40 1.22e-04 accagaaaag aaacttgt gggcgtgact chrX:3368622-3368742 91 1.47e-04 AGCCGTGTGG AAATTTGT GCCAAATACG chr2R:13560681-13560801 54 1.47e-04 CTTTCCCTTG AAATTTGT TTAAATAAAT chr2R:9419731-9419851 27 1.47e-04 CATAGGCGTT AAATTTGT CAGGCACGTA chr2L:10404192-10404312 62 1.47e-04 aaaagatttt aaaattgt tttgaaagtg chrX:13735821-13735941 3 1.47e-04 CG AAATTTGT CAGCCAATTA chr2L:14472440-14472560 82 1.47e-04 CCAAACATCA AAAATTGT TTTCCCTCTT chr3L:14633219-14633339 105 1.60e-04 GTGCTGTGAC ACACATTT TCCAAGCG chr2L:5411479-5411599 74 1.60e-04 CTCGGCTTTC ACACATTT ATGGATTACA chr2R:20845444-20845564 98 1.60e-04 CAACAAAAAC ACACATTT TATTAACCGA chr2L:17262278-17262398 70 1.84e-04 AAAGGCAGCA ACAAATTT AACATTTAAT chrX:6986879-6986999 49 1.99e-04 AGCTGCATTT ACACTTGT GATACGGACG chr2R:24540629-24540749 5 2.62e-04 GTAG AAAAATGT GCGGGGGCTG chr2L:9459594-9459714 6 2.62e-04 aaaTT AAATATGT GTGTAAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16655921-16656041 1.2e-05 1_[+5]_111 chr3L:26224096-26224216 1.2e-05 2_[+5]_110 chr2L:19336929-19337049 1.2e-05 19_[+5]_93 chr4:42373-42493 1.2e-05 31_[+5]_81 chr2L:5799563-5799683 1.2e-05 47_[+5]_65 chr2R:6162760-6162880 1.2e-05 96_[+5]_16 chr4:670183-670303 1.2e-05 43_[+5]_69 chr2L:20923330-20923450 1.2e-05 75_[+5]_37 chr2R:9109574-9109694 3.6e-05 107_[+5]_5 chr2R:5744424-5744544 3.6e-05 97_[+5]_15 chr3R:23038708-23038828 3.6e-05 40_[+5]_72 chr3R:29262850-29262970 3.6e-05 96_[+5]_16 chr4:1028211-1028331 3.6e-05 106_[+5]_6 chr4:448959-449079 4.9e-05 86_[+5]_26 chr2R:15919091-15919211 4.9e-05 107_[+5]_5 chr2L:21619235-21619355 8.7e-05 104_[+5]_8 chr3R:6963532-6963652 8.7e-05 103_[+5]_9 chr3L:19294102-19294222 8.7e-05 17_[+5]_95 chrX:9156690-9156810 8.7e-05 105_[+5]_7 chr3R:16350580-16350700 8.7e-05 104_[+5]_8 chr2R:5126911-5127031 8.7e-05 20_[+5]_92 chr2R:5987298-5987418 8.7e-05 97_[+5]_15 chr2R:15913499-15913619 8.7e-05 111_[+5]_1 chr3L:14333107-14333227 8.7e-05 97_[+5]_15 chr4:131145-131265 8.7e-05 15_[+5]_97 chr3R:8707292-8707412 8.7e-05 97_[+5]_15 chr4:816775-816895 8.7e-05 19_[+5]_93 chr2L:11224807-11224927 0.00011 112_[+5] chr3L:23022698-23022818 0.00011 68_[+5]_44 chrX:7659721-7659841 0.00011 34_[+5]_78 chr2L:22534169-22534289 0.00011 7_[+5]_105 chr3R:5551934-5552054 0.00011 30_[+5]_82 chr2L:16679201-16679321 0.00011 52_[+5]_60 chrX:6091276-6091396 0.00012 35_[+5]_77 chr4:234540-234660 0.00012 39_[+5]_73 chrX:3368622-3368742 0.00015 90_[+5]_22 chr2R:13560681-13560801 0.00015 53_[+5]_59 chr2R:9419731-9419851 0.00015 26_[+5]_86 chr2L:10404192-10404312 0.00015 61_[+5]_51 chrX:13735821-13735941 0.00015 2_[+5]_110 chr2L:14472440-14472560 0.00015 81_[+5]_31 chr3L:14633219-14633339 0.00016 104_[+5]_8 chr2L:5411479-5411599 0.00016 73_[+5]_39 chr2R:20845444-20845564 0.00016 97_[+5]_15 chr2L:17262278-17262398 0.00018 69_[+5]_43 chrX:6986879-6986999 0.0002 48_[+5]_64 chr2R:24540629-24540749 0.00026 4_[+5]_108 chr2L:9459594-9459714 0.00026 5_[+5]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMAHTTTT width=8 seqs=48 chr3R:16655921-16656041 ( 2) AAACTTTT 1 chr3L:26224096-26224216 ( 3) AAACTTTT 1 chr2L:19336929-19337049 ( 20) AAACTTTT 1 chr4:42373-42493 ( 32) AAACTTTT 1 chr2L:5799563-5799683 ( 48) AAACTTTT 1 chr2R:6162760-6162880 ( 97) AAACTTTT 1 chr4:670183-670303 ( 44) AAACTTTT 1 chr2L:20923330-20923450 ( 76) AAACTTTT 1 chr2R:9109574-9109694 ( 108) AAATTTTT 1 chr2R:5744424-5744544 ( 98) AAATTTTT 1 chr3R:23038708-23038828 ( 41) AAATTTTT 1 chr3R:29262850-29262970 ( 97) AAAATTTT 1 chr4:1028211-1028331 ( 107) AAATTTTT 1 chr4:448959-449079 ( 87) ACACTTTT 1 chr2R:15919091-15919211 ( 108) ACACTTTT 1 chr2L:21619235-21619355 ( 105) ACAATTTT 1 chr3R:6963532-6963652 ( 104) ACAATTTT 1 chr3L:19294102-19294222 ( 18) ACATTTTT 1 chrX:9156690-9156810 ( 106) ACATTTTT 1 chr3R:16350580-16350700 ( 105) ACAATTTT 1 chr2R:5126911-5127031 ( 21) ACATTTTT 1 chr2R:5987298-5987418 ( 98) AAACATTT 1 chr2R:15913499-15913619 ( 112) ACAATTTT 1 chr3L:14333107-14333227 ( 98) AAACATTT 1 chr4:131145-131265 ( 16) ACATTTTT 1 chr3R:8707292-8707412 ( 98) ACATTTTT 1 chr4:816775-816895 ( 20) ACATTTTT 1 chr2L:11224807-11224927 ( 113) AAAAATTT 1 chr3L:23022698-23022818 ( 69) AAAAATTT 1 chrX:7659721-7659841 ( 35) AAAAATTT 1 chr2L:22534169-22534289 ( 8) AAAAATTT 1 chr3R:5551934-5552054 ( 31) AAAAATTT 1 chr2L:16679201-16679321 ( 53) AAAAATTT 1 chrX:6091276-6091396 ( 36) AAACTTGT 1 chr4:234540-234660 ( 40) AAACTTGT 1 chrX:3368622-3368742 ( 91) AAATTTGT 1 chr2R:13560681-13560801 ( 54) AAATTTGT 1 chr2R:9419731-9419851 ( 27) AAATTTGT 1 chr2L:10404192-10404312 ( 62) AAAATTGT 1 chrX:13735821-13735941 ( 3) AAATTTGT 1 chr2L:14472440-14472560 ( 82) AAAATTGT 1 chr3L:14633219-14633339 ( 105) ACACATTT 1 chr2L:5411479-5411599 ( 74) ACACATTT 1 chr2R:20845444-20845564 ( 98) ACACATTT 1 chr2L:17262278-17262398 ( 70) ACAAATTT 1 chrX:6986879-6986999 ( 49) ACACTTGT 1 chr2R:24540629-24540749 ( 5) AAAAATGT 1 chr2L:9459594-9459714 ( 6) AAATATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 7.1e-008 208 -1223 -1223 -1223 144 45 -1223 -1223 208 -1223 -1223 -1223 40 53 -1223 35 30 -1223 -1223 153 -1223 -1223 -1223 203 -1223 -1223 -17 165 -1223 -1223 -1223 203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 7.1e-008 1.000000 0.000000 0.000000 0.000000 0.645833 0.354167 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.312500 0.375000 0.000000 0.312500 0.291667 0.000000 0.000000 0.708333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.229167 0.770833 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAHTTTT MEME-5 regular expression -------------------------------------------------------------------------------- A[AC]A[CAT][TA]T[TG]T -------------------------------------------------------------------------------- Time 30.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17165883-17166003 8.69e-04 35_[+1(1.89e-05)]_77 chr3L:9474364-9474484 4.28e-03 31_[+3(1.72e-05)]_81 chr4:1232639-1232759 4.62e-04 58_[+3(1.72e-05)]_54 chr3R:23043739-23043859 2.08e-02 63_[+2(1.88e-05)]_49 chr2R:7396483-7396603 6.48e-05 43_[+3(1.72e-05)]_18_[+3(1.72e-05)]_\ 43 chr3L:18405725-18405845 1.73e-03 63_[+1(1.89e-05)]_6_[+3(3.61e-05)]_\ 35 chr4:816775-816895 2.10e-05 19_[+5(8.67e-05)]_44_[+3(1.72e-05)]_\ 41 chr4:626386-626506 5.03e-04 12_[+4(9.95e-06)]_11_[+2(1.88e-05)]_\ 18_[+2(1.88e-05)]_55 chr2L:18387881-18388001 4.58e-05 19_[+3(1.72e-05)]_9_[+3(3.61e-05)]_\ 4_[+4(2.02e-05)]_64 chr2L:15491310-15491430 1.29e-03 41_[+3(1.72e-05)]_71 chr2L:19313618-19313738 6.75e-02 73_[+2(1.88e-05)]_39 chr2L:16361551-16361671 4.38e-02 60_[+2(1.88e-05)]_52 chrX:18084910-18085030 9.54e-03 65_[+2(1.88e-05)]_47 chr3R:26876999-26877119 3.41e-04 71_[+3(1.72e-05)]_2_[+1(1.89e-05)]_\ 31 chr3L:3165589-3165709 8.75e-04 20_[+1(1.89e-05)]_92 chr2L:14472440-14472560 5.02e-05 47_[+3(1.72e-05)]_65 chr3R:5084533-5084653 1.07e-02 92_[+3(3.61e-05)]_20 chr3L:6929738-6929858 1.86e-05 12_[+4(2.02e-05)]_57_[+3(1.72e-05)]_\ 35 chr4:1028211-1028331 2.54e-03 51_[+4(6.30e-05)]_4_[+4(2.02e-05)]_\ 34_[+5(3.56e-05)]_7 chr2L:18032921-18033041 2.59e-02 87_[+4(3.12e-05)]_25 chr2R:21477472-21477592 1.48e-03 16_[+4(6.30e-05)]_57_[+2(5.33e-05)]_\ 31 chr3R:9143894-9144014 8.19e-02 40_[+2(1.88e-05)]_72 chrX:12576892-12577012 2.84e-04 13_[+1(1.89e-05)]_8_[+3(9.35e-05)]_\ 83 chr3L:21048182-21048302 6.65e-04 51_[+1(1.89e-05)]_61 chr3L:7368883-7369003 2.32e-01 120 chr3R:8707292-8707412 2.23e-05 51_[+3(1.72e-05)]_27_[+4(9.46e-05)]_\ 3_[+5(8.67e-05)]_15 chr3R:18507846-18507966 4.54e-02 15_[+2(1.88e-05)]_97 chr3R:18050243-18050363 1.05e-03 27_[+3(7.57e-05)]_6_[+3(1.72e-05)]_\ 71 chr3L:11254415-11254535 1.33e-03 14_[+1(1.89e-05)]_23_[+3(1.72e-05)]_\ 67 chrX:6986879-6986999 7.07e-03 100_[+2(1.88e-05)]_12 chr3R:14675945-14676065 4.70e-04 23_[+4(9.95e-06)]_45_[+2(1.88e-05)]_\ 36 chr3R:5115552-5115672 9.94e-02 67_[+2(1.88e-05)]_45 chr2L:3000268-3000388 6.37e-03 49_[+3(1.72e-05)]_12_[+3(1.72e-05)]_\ 43 chr3L:17759117-17759237 4.76e-04 61_[+3(1.72e-05)]_17_[+3(1.72e-05)]_\ 26 chr2L:20923330-20923450 2.81e-06 75_[+5(1.25e-05)]_4_[+3(1.72e-05)]_\ 25 chr3L:18835010-18835130 5.61e-04 69_[+3(1.72e-05)]_43 chr2R:15919091-15919211 9.07e-05 37_[+4(3.12e-05)]_23_[+2(1.88e-05)]_\ 31_[+5(4.93e-05)]_5 chrX:7424218-7424338 1.58e-01 81_[+2(1.88e-05)]_31 chr3R:21822329-21822449 1.02e-02 13_[+1(1.89e-05)]_14_[+3(7.57e-05)]_\ 77 chr2L:16679201-16679321 2.33e-04 60_[+4(9.95e-06)]_11_[+2(3.60e-05)]_\ 33 chr3R:5551934-5552054 1.63e-03 86_[+2(1.88e-05)]_26 chrX:10729596-10729716 1.67e-01 96_[+2(1.88e-05)]_16 chr3R:15616979-15617099 1.22e-03 44_[+3(1.72e-05)]_68 chr2L:11735797-11735917 4.80e-02 54_[+2(8.84e-05)]_1_[+2(5.33e-05)]_\ 49 chr4:131145-131265 1.39e-03 13_[+5(8.67e-05)]_11_[+2(5.33e-05)]_\ 18_[+2(1.88e-05)]_54 chr2R:15795458-15795578 8.82e-04 30_[+3(1.72e-05)]_82 chr2R:15657947-15658067 1.77e-02 58_[+2(1.88e-05)]_54 chrX:13735821-13735941 6.22e-03 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7_[+2(1.88e-05)]_40_[+4(9.46e-05)]_\ 1_[+4(9.46e-05)]_48 chr3R:31086551-31086671 3.64e-02 120 chr2L:22534169-22534289 1.20e-03 34_[+2(3.60e-05)]_61_[+4(9.46e-05)]_\ 9 chr2R:7158918-7159038 2.07e-04 37_[+4(4.25e-05)]_23_[+1(1.89e-05)]_\ 44 chr3R:16782542-16782662 1.06e-02 69_[+1(1.89e-05)]_43 chr3R:16934845-16934965 1.05e-01 94_[+2(5.33e-05)]_18 chr2L:10404192-10404312 1.50e-02 80_[+2(3.60e-05)]_32 chrX:18657136-18657256 1.80e-01 120 chr2R:20845444-20845564 1.84e-04 56_[+2(1.88e-05)]_56 chr2R:18674803-18674923 4.25e-04 53_[+3(1.72e-05)]_59 chr2L:5411479-5411599 4.45e-03 49_[+2(1.88e-05)]_63 chr3L:15756067-15756187 5.13e-02 60_[+2(7.11e-05)]_52 chr4:234540-234660 2.53e-04 3_[+4(9.95e-06)]_36_[+2(3.60e-05)]_\ 65 chr3L:12063805-12063925 1.27e-01 54_[+2(1.88e-05)]_10_[+2(1.88e-05)]_\ 40 chr3L:900371-900491 1.76e-03 37_[+3(1.72e-05)]_75 chr3L:10748880-10749000 2.12e-05 28_[+3(1.72e-05)]_21_[+4(3.12e-05)]_\ 55 chrX:5770931-5771051 6.26e-04 73_[+3(1.72e-05)]_39 chr2R:20943864-20943984 1.45e-01 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1_[+4(6.30e-05)]_7 chr4:448959-449079 2.63e-05 51_[+1(1.89e-05)]_6_[+3(3.61e-05)]_\ 7_[+3(1.72e-05)]_32 chr2R:17719568-17719688 2.95e-03 72_[+3(5.50e-05)]_40 chr3R:23133342-23133462 1.06e-02 44_[+2(1.88e-05)]_68 chr2L:9252609-9252729 3.69e-02 55_[+2(1.88e-05)]_57 chr3R:21616050-21616170 1.48e-01 33_[+2(1.88e-05)]_79 chr3L:20498219-20498339 6.40e-02 112_[+3(3.61e-05)] chr3L:3514647-3514767 2.06e-03 87_[+2(1.88e-05)]_25 chr2R:19270926-19271046 2.49e-02 103_[+2(1.88e-05)]_9 chr2L:19951501-19951621 1.47e-04 19_[+1(1.89e-05)]_93 chr2R:15913499-15913619 8.72e-05 28_[+3(1.72e-05)]_75_[+5(8.67e-05)]_\ 1 chr3R:5096078-5096198 3.04e-04 11_[+1(1.89e-05)]_91_[+4(3.12e-05)]_\ 2 chr3R:23131662-23131782 3.15e-02 87_[+2(5.33e-05)]_25 chrX:5888162-5888282 8.12e-03 72_[+1(1.89e-05)]_40 chr2L:7519955-7520075 1.83e-05 47_[+3(1.72e-05)]_53_[+4(9.95e-06)]_\ 4 chr3L:7911346-7911466 8.45e-03 45_[+1(1.89e-05)]_67 chr3L:17409699-17409819 9.32e-03 65_[+2(1.88e-05)]_47 chr2L:19866712-19866832 2.10e-03 21_[+1(1.89e-05)]_91 chrX:3143537-3143657 6.30e-03 8_[+1(1.89e-05)]_104 chr2R:6162760-6162880 2.95e-05 22_[+5(8.67e-05)]_66_[+5(1.25e-05)]_\ 2_[+1(5.33e-05)]_6 chr3R:16847381-16847501 1.74e-03 97_[+3(1.72e-05)]_15 chr3L:14275519-14275639 1.17e-04 63_[+3(1.72e-05)]_39_[+2(8.84e-05)]_\ 2 chrX:8659486-8659606 1.27e-01 100_[+2(1.88e-05)]_12 chr2L:6234015-6234135 3.12e-05 56_[+2(1.88e-05)]_6_[+2(1.88e-05)]_\ 26_[+4(9.95e-06)]_8 chrX:13616187-13616307 7.06e-04 62_[+2(1.88e-05)]_8_[+2(1.88e-05)]_\ 34 chr2L:19576366-19576486 1.79e-02 40_[+1(1.89e-05)]_72 chr2R:5987298-5987418 1.06e-03 63_[+2(1.88e-05)]_26_[+5(8.67e-05)]_\ 15 chr2R:21870970-21871090 1.15e-01 120 chr2R:5126911-5127031 1.95e-04 7_[+4(9.95e-06)]_3_[+5(8.67e-05)]_\ 11_[+2(3.60e-05)]_30_[+2(5.33e-05)]_37 chr3R:16350580-16350700 6.13e-05 37_[+3(1.72e-05)]_25_[+3(5.50e-05)]_\ 26_[+5(8.67e-05)]_8 chr2L:3372663-3372783 1.50e-02 99_[+2(1.88e-05)]_13 chr3R:27636957-27637077 6.86e-01 120 chr3R:5300704-5300824 1.11e-01 58_[+2(1.88e-05)]_54 chr3R:22044633-22044753 2.89e-02 49_[+2(1.88e-05)]_63 chr3R:23038708-23038828 2.78e-03 40_[+5(3.56e-05)]_43_[+2(1.88e-05)]_\ 21 chr2L:5743704-5743824 5.44e-01 120 chr3R:31712893-31713013 1.58e-01 120 chrX:11440425-11440545 1.02e-03 48_[+3(1.72e-05)]_64 chr3L:5975131-5975251 1.92e-02 120 chr2L:14568848-14568968 7.34e-04 22_[+3(7.57e-05)]_53_[+2(1.88e-05)]_\ 29 chr3L:128734-128854 2.59e-02 65_[+2(1.88e-05)]_47 chrX:13231267-13231387 1.86e-02 71_[+2(1.88e-05)]_41 chr2L:4057014-4057134 4.94e-02 52_[+2(1.88e-05)]_[+2(1.88e-05)]_52 chr3R:13797280-13797400 1.09e-02 14_[+3(3.61e-05)]_98 chr2R:6529960-6530080 4.14e-03 32_[+3(9.35e-05)]_12_[+1(1.89e-05)]_\ 60 chrX:22499759-22499879 4.97e-04 60_[+1(1.89e-05)]_52 chr3L:10353655-10353775 2.01e-03 85_[+3(1.72e-05)]_27 chr3R:15617974-15618094 2.28e-01 23_[+2(1.88e-05)]_89 chr3L:10691229-10691349 9.84e-03 37_[+3(7.57e-05)]_3_[+1(1.89e-05)]_\ 64 chrX:13277748-13277868 3.84e-01 29_[+2(7.11e-05)]_83 chr3L:10691017-10691137 7.50e-04 11_[+3(9.35e-05)]_27_[+3(1.72e-05)]_\ 66 chr2R:15713004-15713124 3.37e-03 47_[+3(3.61e-05)]_19_[+3(1.72e-05)]_\ 38 chr2R:6042568-6042688 7.67e-02 120 chr2R:5744424-5744544 4.00e-05 33_[+3(1.72e-05)]_36_[+5(8.67e-05)]_\ 12_[+5(3.56e-05)]_15 chr3R:5080652-5080772 1.92e-03 70_[+1(1.89e-05)]_10_[+3(3.61e-05)]_\ 24 chr3L:22932909-22933029 8.64e-03 17_[+2(1.88e-05)]_30_[+2(8.84e-05)]_\ 57 chr3L:20399059-20399179 3.21e-04 77_[+1(1.89e-05)]_35 chr2R:8018919-8019039 1.44e-03 35_[+2(1.88e-05)]_11_[+1(8.99e-05)]_\ 58 chr3L:12648552-12648672 2.16e-03 66_[+1(1.89e-05)]_46 chrX:6853591-6853711 2.55e-01 81_[+2(1.88e-05)]_31 chr2L:20917112-20917232 1.52e-03 60_[+2(1.88e-05)]_52 chrX:4672250-4672370 2.44e-02 38_[+2(1.88e-05)]_14_[+2(3.60e-05)]_\ 52 chr3L:10581978-10582098 5.51e-03 58_[+1(1.89e-05)]_14_[+3(1.72e-05)]_\ 23_[+3(1.72e-05)]_1 chr2R:9419731-9419851 1.33e-02 65_[+2(1.88e-05)]_31_[+2(5.33e-05)]_\ 8 chr2R:8030958-8031078 2.40e-03 60_[+3(1.72e-05)]_52 chr3R:4979326-4979446 8.43e-01 120 chrX:9586236-9586356 1.49e-01 83_[+2(1.88e-05)]_29 chr3R:9064803-9064923 2.45e-01 30_[+2(1.88e-05)]_82 chr2R:9109574-9109694 1.49e-04 56_[+1(1.89e-05)]_43_[+5(3.56e-05)]_\ 5 chr2L:19204725-19204845 3.70e-04 72_[+1(1.89e-05)]_40 chr3R:30820862-30820982 6.29e-04 46_[+3(1.72e-05)]_66 chrX:16694091-16694211 8.29e-04 32_[+1(1.89e-05)]_80 chrX:5995896-5996016 1.06e-03 31_[+3(3.61e-05)]_11_[+2(1.88e-05)]_\ 62 chr3L:3097408-3097528 6.59e-04 24_[+4(2.02e-05)]_9_[+3(1.72e-05)]_\ 71 chr3R:24749585-24749705 1.81e-02 24_[+1(1.89e-05)]_88 chr3L:13863479-13863599 2.02e-02 44_[+3(7.57e-05)]_68 chr3L:15347816-15347936 1.08e-03 47_[+3(1.72e-05)]_65 chrX:7659721-7659841 1.43e-06 13_[+3(1.72e-05)]_99 chrX:13736020-13736140 6.23e-01 120 chr3R:10100599-10100719 2.59e-03 39_[+1(1.89e-05)]_9_[+3(3.61e-05)]_\ 56 chrX:9156690-9156810 3.72e-02 105_[+5(8.67e-05)]_7 chr3L:3885809-3885929 8.91e-03 93_[+2(1.88e-05)]_19 chr2L:5799563-5799683 4.13e-03 47_[+5(1.25e-05)]_65 chr4:42373-42493 1.01e-05 31_[+5(1.25e-05)]_41_[+3(1.72e-05)]_\ 8_[+5(8.67e-05)]_16 chr3R:32006199-32006319 1.72e-03 9_[+4(2.02e-05)]_18_[+2(1.88e-05)]_\ 77 chr2R:11890645-11890765 1.18e-04 5_[+3(1.72e-05)]_16_[+2(8.84e-05)]_\ 83 chr4:797077-797197 6.15e-02 45_[+2(3.60e-05)]_67 chr3L:1178163-1178283 4.25e-03 43_[+1(1.89e-05)]_69 chr2L:1436294-1436414 1.76e-01 45_[+2(1.88e-05)]_67 chrX:9134268-9134388 1.48e-02 24_[+2(1.88e-05)]_59_[+2(1.88e-05)]_\ 21 chrX:13189282-13189402 1.18e-02 5_[+3(3.61e-05)]_107 chrX:12957719-12957839 8.18e-01 120 chr3L:5844077-5844197 1.87e-03 15_[+1(1.89e-05)]_6_[+3(5.50e-05)]_\ 83 chr2R:5982468-5982588 2.32e-03 18_[+3(3.61e-05)]_94 chr3R:31197016-31197136 5.47e-04 42_[+3(1.72e-05)]_70 chr3R:5025327-5025447 6.11e-04 72_[+1(1.89e-05)]_40 chr3L:14633219-14633339 7.55e-04 4_[+3(7.57e-05)]_16_[+3(7.57e-05)]_\ 84 chr3R:16764211-16764331 6.61e-01 120 chr3L:21049481-21049601 4.89e-04 43_[+3(1.72e-05)]_4_[+3(1.72e-05)]_\ 57 chrX:3140343-3140463 5.92e-03 80_[+1(1.89e-05)]_32 chr3L:23022698-23022818 7.93e-04 2_[+2(3.60e-05)]_29_[+2(1.88e-05)]_\ 49_[+4(9.46e-05)]_16 chr2L:19134384-19134504 3.66e-04 120 chr2L:9459594-9459714 1.24e-05 46_[+3(1.72e-05)]_66 chr2R:7423367-7423487 2.52e-02 120 chr3L:19294102-19294222 3.46e-04 4_[+4(9.46e-05)]_5_[+5(8.67e-05)]_\ 23_[+2(1.88e-05)]_64 chr3L:4976642-4976762 3.08e-02 47_[+3(3.61e-05)]_65 chr2L:2987269-2987389 1.14e-03 58_[+3(1.72e-05)]_54 chr3R:13360239-13360359 4.78e-02 112_[+2(7.11e-05)] chr2L:7310418-7310538 1.26e-01 24_[+2(1.88e-05)]_88 chr2L:19336929-19337049 2.06e-04 19_[+5(1.25e-05)]_74_[+2(1.88e-05)]_\ 11 chr2L:3867637-3867757 2.27e-02 96_[+4(3.12e-05)]_16 chr3L:7335143-7335263 1.28e-01 120 chr2R:13560681-13560801 1.14e-04 21_[+3(1.72e-05)]_91 chr3R:6963532-6963652 3.40e-04 50_[+2(1.88e-05)]_45_[+5(8.67e-05)]_\ 9 chr2R:10102433-10102553 1.47e-02 8_[+1(1.89e-05)]_104 chr2L:2014003-2014123 1.97e-01 120 chrX:17313481-17313601 6.24e-02 104_[+2(1.88e-05)]_8 chr2R:18583152-18583272 8.48e-03 69_[+4(3.12e-05)]_43 chrX:3368622-3368742 1.52e-04 27_[+1(1.89e-05)]_35_[+3(1.72e-05)]_\ 42 chr2L:3571613-3571733 1.70e-03 31_[+1(1.89e-05)]_81 chr3R:12369265-12369385 7.21e-03 90_[+2(1.88e-05)]_22 chr2L:11224807-11224927 8.20e-04 58_[+2(1.88e-05)]_54 chr3R:21347536-21347656 1.07e-02 120 chr3R:29773116-29773236 2.44e-03 25_[+3(1.72e-05)]_60_[+3(7.57e-05)]_\ 19 chrX:3332546-3332666 1.94e-02 20_[+1(5.33e-05)]_92 chr2L:21619235-21619355 5.14e-05 42_[+3(1.72e-05)]_30_[+3(1.72e-05)]_\ 16_[+5(8.67e-05)]_8 chr2L:6821757-6821877 4.62e-02 5_[+2(1.88e-05)]_107 chr3R:30888663-30888783 1.48e-02 53_[+2(1.88e-05)]_59 chr3L:22724452-22724572 5.73e-03 99_[+1(1.89e-05)]_13 chrX:5716095-5716215 9.09e-03 83_[+1(1.89e-05)]_29 chr2R:24540629-24540749 3.07e-04 78_[+3(5.50e-05)]_5_[+3(5.50e-05)]_\ 21 chrX:21338519-21338639 4.55e-02 120 chr3L:1102601-1102721 5.09e-01 120 chrX:6091276-6091396 3.12e-02 120 chr3R:6678649-6678769 6.79e-01 120 chr3L:26224096-26224216 2.81e-06 2_[+5(1.25e-05)]_4_[+3(1.72e-05)]_\ 29_[+3(1.72e-05)]_8_[+5(8.67e-05)]_1_[+5(3.56e-05)]_36 chr3R:16655921-16656041 3.81e-03 1_[+5(1.25e-05)]_111 chr3R:15262905-15263025 1.82e-01 120 chr3L:9024759-9024879 4.53e-03 59_[+1(1.89e-05)]_3_[+3(3.61e-05)]_\ 42 chr3L:7947961-7948081 1.14e-02 6_[+1(1.89e-05)]_27_[+1(1.89e-05)]_\ 71 chr3R:15672625-15672745 5.86e-03 47_[+2(1.88e-05)]_32_[+4(6.30e-05)]_\ 25 chr2L:17262278-17262398 2.40e-04 13_[+1(7.21e-05)]_99 chr3R:21855812-21855932 1.80e-01 51_[+2(1.88e-05)]_61 chr2R:5088420-5088540 3.73e-03 20_[+4(6.30e-05)]_20_[+2(3.60e-05)]_\ 49_[+4(9.46e-05)]_7 chr3L:5989844-5989964 2.01e-01 106_[+2(1.88e-05)]_6 chr2L:9496460-9496580 8.12e-01 120 chr3R:28629691-28629811 1.98e-02 69_[+2(1.88e-05)]_43 chr2R:10806686-10806806 8.03e-02 20_[+2(7.11e-05)]_92 chr2L:4197720-4197840 3.49e-03 58_[+2(1.88e-05)]_54 chr3L:11772838-11772958 1.66e-01 81_[+2(8.84e-05)]_31 chr3R:16919189-16919309 7.56e-01 120 chr2R:14030485-14030605 7.85e-02 86_[+2(1.88e-05)]_26 chr2L:7993230-7993350 3.76e-03 41_[+3(1.72e-05)]_71 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************