******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG30431.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:10681699-10681819 1.0000 120 chr2L:7292072-7292192 1.0000 120 chrX:5604325-5604445 1.0000 120 chr3L:19446905-19447025 1.0000 120 chr3R:10626224-10626344 1.0000 120 chr2R:10265445-10265565 1.0000 120 chr2L:7298877-7298997 1.0000 120 chr3R:5871544-5871664 1.0000 120 chr3L:7521955-7522075 1.0000 120 chrX:17471813-17471933 1.0000 120 chr3L:10337662-10337782 1.0000 120 chr2R:23003254-23003374 1.0000 120 chr3L:10515034-10515154 1.0000 120 chr3R:5083174-5083294 1.0000 120 chr3R:8072745-8072865 1.0000 120 chrX:8444431-8444551 1.0000 120 chr3R:28562953-28563073 1.0000 120 chr2R:5108990-5109110 1.0000 120 chrX:3096426-3096546 1.0000 120 chr2L:3435194-3435314 1.0000 120 chr2L:15249830-15249950 1.0000 120 chr3R:16907907-16908027 1.0000 120 chr3L:6059243-6059363 1.0000 120 chr3R:8197216-8197336 1.0000 120 chr3R:29550107-29550227 1.0000 120 chr3R:30932212-30932332 1.0000 120 chr2R:15351229-15351349 1.0000 120 chr3L:1371070-1371190 1.0000 120 chr3L:22162605-22162725 1.0000 120 chr2R:23202159-23202279 1.0000 120 chr3R:28805219-28805339 1.0000 120 chr3L:1464580-1464700 1.0000 120 chr2L:3841084-3841204 1.0000 120 chr2R:8644854-8644974 1.0000 120 chrX:20586147-20586267 1.0000 120 chr3R:16673373-16673493 1.0000 120 chr3R:13885131-13885251 1.0000 120 chr3L:15847765-15847885 1.0000 120 chr3L:15733496-15733616 1.0000 120 chr3L:3395509-3395629 1.0000 120 chrX:19453282-19453402 1.0000 120 chr2R:14312347-14312467 1.0000 120 chr3L:18357795-18357915 1.0000 120 chr3L:14971982-14972102 1.0000 120 chr3L:2884552-2884672 1.0000 120 chrX:16690672-16690792 1.0000 120 chr2L:6794988-6795108 1.0000 120 chr3L:19178099-19178219 1.0000 120 chr3R:4974946-4975066 1.0000 120 chrX:12249003-12249123 1.0000 120 chr3R:17231680-17231800 1.0000 120 chr2L:8842295-8842415 1.0000 120 chr2L:20370311-20370431 1.0000 120 chr2L:3819075-3819195 1.0000 120 chr2L:3601000-3601120 1.0000 120 chr2L:14376951-14377071 1.0000 120 chrX:9048562-9048682 1.0000 120 chr3R:6949396-6949516 1.0000 120 chrX:17912147-17912267 1.0000 120 chr2L:7957049-7957169 1.0000 120 chr3R:27619335-27619455 1.0000 120 chrX:12241184-12241304 1.0000 120 chr2R:20079870-20079990 1.0000 120 chr2L:15337363-15337483 1.0000 120 chr2R:9071768-9071888 1.0000 120 chr3L:10962305-10962425 1.0000 120 chrX:18902913-18903033 1.0000 120 chr2L:3675969-3676089 1.0000 120 chrX:12923412-12923532 1.0000 120 chrX:9295681-9295801 1.0000 120 chr3L:3882208-3882328 1.0000 120 chr2R:10439006-10439126 1.0000 120 chr3R:30501256-30501376 1.0000 120 chrX:2036915-2037035 1.0000 120 chr2R:10681459-10681579 1.0000 120 chr2R:8358039-8358159 1.0000 120 chr3L:15794423-15794543 1.0000 120 chr2L:1362380-1362500 1.0000 120 chr2L:1071089-1071209 1.0000 120 chr3L:6981886-6982006 1.0000 120 chr2R:12274363-12274483 1.0000 120 chr2L:11338430-11338550 1.0000 120 chr3L:15304785-15304905 1.0000 120 chr3L:13068412-13068532 1.0000 120 chr3L:15234647-15234767 1.0000 120 chrX:14583349-14583469 1.0000 120 chr3L:15672954-15673074 1.0000 120 chr3L:11429758-11429878 1.0000 120 chr3L:1358481-1358601 1.0000 120 chr3R:31704593-31704713 1.0000 120 chr2L:8552728-8552848 1.0000 120 chr2R:15134337-15134457 1.0000 120 chrX:3931797-3931917 1.0000 120 chr3L:13356230-13356350 1.0000 120 chr3R:23300762-23300882 1.0000 120 chr2R:18325058-18325178 1.0000 120 chr3R:29265277-29265397 1.0000 120 chr2L:8554461-8554581 1.0000 120 chr3R:9083456-9083576 1.0000 120 chrX:14247450-14247570 1.0000 120 chr3L:6220327-6220447 1.0000 120 chrX:2050706-2050826 1.0000 120 chr3R:9494309-9494429 1.0000 120 chrX:6110017-6110137 1.0000 120 chrX:8884062-8884182 1.0000 120 chr2L:7175962-7176082 1.0000 120 chrX:17780439-17780559 1.0000 120 chr2R:9660206-9660326 1.0000 120 chr3L:6797502-6797622 1.0000 120 chr3L:3449763-3449883 1.0000 120 chr2L:14701613-14701733 1.0000 120 chr2L:3775964-3776084 1.0000 120 chr2L:3012882-3013002 1.0000 120 chr3R:19339341-19339461 1.0000 120 chr3R:22260351-22260471 1.0000 120 chr3L:8604424-8604544 1.0000 120 chr3R:29548883-29549003 1.0000 120 chr3L:5857086-5857206 1.0000 120 chr2R:1345195-1345315 1.0000 120 chr2L:19233490-19233610 1.0000 120 chr2R:16097020-16097140 1.0000 120 chr2R:12218829-12218949 1.0000 120 chr2R:11809442-11809562 1.0000 120 chr2R:14783025-14783145 1.0000 120 chr2L:20721569-20721689 1.0000 120 chr3R:10648914-10649034 1.0000 120 chrX:18525018-18525138 1.0000 120 chr2L:18899983-18900103 1.0000 120 chrX:10825452-10825572 1.0000 120 chrX:8671461-8671581 1.0000 120 chr3L:8748989-8749109 1.0000 120 chr2L:18895191-18895311 1.0000 120 chrX:12947804-12947924 1.0000 120 chr3R:19113933-19114053 1.0000 120 chr2R:7077054-7077174 1.0000 120 chrX:1083265-1083385 1.0000 120 chr3L:14166364-14166484 1.0000 120 chr3L:4413137-4413257 1.0000 120 chr3R:23872972-23873092 1.0000 120 chr3R:6723975-6724095 1.0000 120 chr2L:11950006-11950126 1.0000 120 chr3L:9042721-9042841 1.0000 120 chr3R:30164246-30164366 1.0000 120 chr3L:11303977-11304097 1.0000 120 chr2L:9779276-9779396 1.0000 120 chrX:4262793-4262913 1.0000 120 chr3R:23445448-23445568 1.0000 120 chr3R:30814943-30815063 1.0000 120 chr3R:27289764-27289884 1.0000 120 chr2L:20327566-20327686 1.0000 120 chr3R:14386315-14386435 1.0000 120 chr2L:19377508-19377628 1.0000 120 chr3L:908685-908805 1.0000 120 chr3L:14411057-14411177 1.0000 120 chr2L:15908521-15908641 1.0000 120 chr2R:12173436-12173556 1.0000 120 chr2R:14645106-14645226 1.0000 120 chr3R:11806900-11807020 1.0000 120 chrX:10067669-10067789 1.0000 120 chr2L:7544491-7544611 1.0000 120 chr2L:3533240-3533360 1.0000 120 chr3L:1216589-1216709 1.0000 120 chr3L:1084500-1084620 1.0000 120 chr2R:15034864-15034984 1.0000 120 chr3L:10845239-10845359 1.0000 120 chr3R:18914083-18914203 1.0000 120 chrX:20507861-20507981 1.0000 120 chr3L:15235265-15235385 1.0000 120 chrX:20644125-20644245 1.0000 120 chr2L:4915833-4915953 1.0000 120 chr2L:11417613-11417733 1.0000 120 chr3R:21612956-21613076 1.0000 120 chr3L:22277381-22277501 1.0000 120 chr2L:7632930-7633050 1.0000 120 chr3L:18250840-18250960 1.0000 120 chrX:3367443-3367563 1.0000 120 chr3R:10661377-10661497 1.0000 120 chr3L:11336409-11336529 1.0000 120 chrX:5639205-5639325 1.0000 120 chr2L:7532767-7532887 1.0000 120 chr3R:27988931-27989051 1.0000 120 chr2R:21527375-21527495 1.0000 120 chrX:3068415-3068535 1.0000 120 chr2L:14562356-14562476 1.0000 120 chr3R:28857445-28857565 1.0000 120 chr3R:22664405-22664525 1.0000 120 chrX:5972158-5972278 1.0000 120 chr2R:14305282-14305402 1.0000 120 chr3R:21850232-21850352 1.0000 120 chr3L:18349434-18349554 1.0000 120 chrX:19146389-19146509 1.0000 120 chrX:6801092-6801212 1.0000 120 chr3R:5300711-5300831 1.0000 120 chr2L:19376284-19376404 1.0000 120 chr3R:30767234-30767354 1.0000 120 chr3L:614906-615026 1.0000 120 chr2L:4056934-4057054 1.0000 120 chr3L:18272461-18272581 1.0000 120 chrX:17510712-17510832 1.0000 120 chr3L:6885896-6886016 1.0000 120 chr3R:25445674-25445794 1.0000 120 chr2R:20601178-20601298 1.0000 120 chr3R:21993064-21993184 1.0000 120 chr2R:23578513-23578633 1.0000 120 chr3L:16760343-16760463 1.0000 120 chrX:17713405-17713525 1.0000 120 chr2R:7054227-7054347 1.0000 120 chr3L:4158514-4158634 1.0000 120 chr3L:1031097-1031217 1.0000 120 chrX:8755474-8755594 1.0000 120 chr3L:1414188-1414308 1.0000 120 chr2R:15835499-15835619 1.0000 120 chr2R:23668825-23668945 1.0000 120 chr3L:9028189-9028309 1.0000 120 chr3L:5987769-5987889 1.0000 120 chr3L:16749875-16749995 1.0000 120 chr2R:22886142-22886262 1.0000 120 chr3L:16768385-16768505 1.0000 120 chr2L:18982257-18982377 1.0000 120 chr3R:10628467-10628587 1.0000 120 chrX:7945496-7945616 1.0000 120 chr3L:10784598-10784718 1.0000 120 chrX:21117040-21117160 1.0000 120 chr2L:18921422-18921542 1.0000 120 chr2L:10516915-10517035 1.0000 120 chr2L:13905412-13905532 1.0000 120 chr2R:13261828-13261948 1.0000 120 chr3R:16771680-16771800 1.0000 120 chr2L:3444924-3445044 1.0000 120 chr3L:20630788-20630908 1.0000 120 chr3L:9461760-9461880 1.0000 120 chr3L:10931493-10931613 1.0000 120 chr2L:11189188-11189308 1.0000 120 chr3R:29211211-29211331 1.0000 120 chr3L:627885-628005 1.0000 120 chrX:16967564-16967684 1.0000 120 chr3R:30263828-30263948 1.0000 120 chr3R:6665436-6665556 1.0000 120 chrX:11137524-11137644 1.0000 120 chr2L:13666278-13666398 1.0000 120 chr3R:13713668-13713788 1.0000 120 chrX:11081263-11081383 1.0000 120 chr2R:23176780-23176900 1.0000 120 chr2L:488308-488428 1.0000 120 chr2L:3852255-3852375 1.0000 120 chrX:2978216-2978336 1.0000 120 chrX:3019757-3019877 1.0000 120 chr3R:21187077-21187197 1.0000 120 chr3L:11334086-11334206 1.0000 120 chr2R:20906653-20906773 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG30431/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG30431.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.32 C 0.183 G 0.182 T 0.315 Background letter frequencies (from file dataset with add-one prior applied): A 0.32 C 0.183 G 0.182 T 0.315 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCACTGHR MEME-1 width = 8 sites = 82 llr = 600 E-value = 1.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGHR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:9:1:46 pos.-specific C 1a17::4: probability G 7::3:a:4 matrix T ::::8:2: bits 2.5 * 2.2 * * 2.0 * * 1.7 * * Relative 1.5 ** * Entropy 1.2 **** * (10.6 bits) 1.0 **** * * 0.7 ****** * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel GCACTGCA consensus A G AG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGHR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15134337-15134457 64 3.72e-06 ATTGACTGCT GCACTGCG ATGCAAGTAA chr3L:7521955-7522075 39 3.72e-06 GTATTCGTAT GCACTGCG AGAAATTGGG chr2L:18982257-18982377 46 1.03e-05 CAATCTAATA GCACTGCA ATGTGGTGTG chr3L:6885896-6886016 98 1.03e-05 TCATTTAGCA GCACTGCA GTGCAGCCAC chr2L:7957049-7957169 8 1.03e-05 CCCCCCA GCACTGCA CAGTGGTTAA chr3L:19178099-19178219 54 1.03e-05 TGAGCACTGA GCACTGCA CTGAGCTCTC chr3R:8197216-8197336 29 1.03e-05 GGCCATATAT GCACTGCA CGAAATGCAA chr2L:14701613-14701733 3 1.68e-05 CT GCACTGAG AAAAATATTT chr3R:9083456-9083576 48 1.68e-05 AACACTATCT GCACTGAG AAAAACGGGC chr3L:15304785-15304905 35 1.68e-05 CTTCGGATGT GCACTGAG AGAAAATACG chr3L:11334086-11334206 32 2.82e-05 TCTCGGACTT GCACTGAA AAAAATGCAT chr3L:10931493-10931613 34 2.82e-05 GGCCCGATCT GCACTGAA AAAAATTGTG chr3R:11806900-11807020 58 2.82e-05 TGCCAATTAT GCACTGAA AAGTAATAAT chr3L:13068412-13068532 20 2.82e-05 CTTCAATTGC GCACTGAA AATGTTGTTC chr3L:1371070-1371190 32 2.82e-05 AAAAATTATC GCACTGAA TATATAATAT chr3R:10626224-10626344 46 2.82e-05 GTTTCAAAGT GCACTGAA TCTGGTCAGA chr2L:1071089-1071209 75 3.85e-05 TGTGAAAATA GCAGTGCA TTTTGTTTAT chrX:12923412-12923532 90 3.85e-05 GTTATTTCTC GCAGTGCA GCTGACGGCT chrX:17912147-17912267 88 3.85e-05 GGCGTTTCTC GCAGTGCA CATGGgctgc chr3L:6059243-6059363 61 3.85e-05 GGTCAATGAA GCAGTGCA TAGAACGGAA chr2R:14645106-14645226 36 4.49e-05 GCACACAGGC GCACTGTG GCGTTTTAGC chr3R:6949396-6949516 28 4.49e-05 GCACTGTGGT GCACTGTG AAAAATATAG chr2R:8644854-8644974 87 5.61e-05 CTTATGACCA GCACTGTA CTTATGTAAA chr3L:14971982-14972102 49 6.26e-05 CAACTACGCT GCAGTGAG TGTGGAATCT chrX:11081263-11081383 26 1.02e-04 GCTTACGAAC GCACAGCA GCGCCCAAAT chr2L:3841084-3841204 7 1.02e-04 GCAAAT GCACAGCA AAAAAATAGT chr3L:22162605-22162725 33 1.02e-04 TGCTGCTTCT GCACAGCA AGAAAACCTT chr2R:10265445-10265565 78 1.02e-04 AAATTCCATT ACACTGCA GAATTTAAAG chr3L:16768385-16768505 9 1.22e-04 TGAGGAAG GCAGTGTA TGCAGACTTA chr3L:22277381-22277501 99 1.22e-04 AAGTGTTCTC GCAGTGTA TCACTCTAAG chr3R:30164246-30164366 81 1.22e-04 CTAATTTTTT GCAGTGTA CAAATCCAGC chr2L:19233490-19233610 75 1.22e-04 ATATTTTCAT GCAGTGTA TGGATAAACA chr2R:12218829-12218949 44 1.32e-04 GTGCGTGTGC GCCCTGCA CTGGCAAaaa chrX:17713405-17713525 8 1.64e-04 AACACAT GCACAGAG AGAAAAAACG chrX:20507861-20507981 5 1.64e-04 CCCT ACACTGAG AGAAAGGGCT chr2L:19377508-19377628 60 1.64e-04 CGCTGCAACT ACACTGAG AGAAATTTAG chr2L:11950006-11950126 25 1.64e-04 GTGAATGGCT ACACTGAG GGAAAAAAGA chr3L:4413137-4413257 51 1.64e-04 CCACACCCAT GCACTGGG AAAAATAAGT chr3L:3449763-3449883 37 1.64e-04 GCAGGTGAGC ACACTGAG CGAAAAGTAC chrX:17780439-17780559 5 1.64e-04 AAAA CCACTGCA AGCAAGTTTA chr3R:31704593-31704713 43 1.64e-04 CACACCCCGT GCACTGGG GTTAAGTAAT chr3L:1464580-1464700 106 1.64e-04 GCCAGCCAAG GCACGGCA CCCACTC chr3L:10784598-10784718 52 2.02e-04 CCAGTGAAGT ACACTGAA CAAAAAAATT chr2L:11417613-11417733 4 2.02e-04 AAT ACACTGAA CAAAGTGTTT chr2L:20721569-20721689 4 2.02e-04 AGA ACACTGAA CGAAAACTTT chr3L:2884552-2884672 1 2.02e-04 . GCACTGGA ACTTCTATTA chr3R:8072745-8072865 52 2.02e-04 TGCATTTAAA ACACTGAA AGTAAATGAT chr3R:21850232-21850352 18 2.13e-04 TGTAATTAGA ACAGTGCG GACTCGGCCA chr3L:4158514-4158634 109 2.31e-04 CACTTTTCTC ACAGTGCA TTTA chr3L:1358481-1358601 88 2.31e-04 ACTTTTGTTC ACAGTGCA TCCATATTTT chr3L:1031097-1031217 82 2.69e-04 CAGACAAAGC GCACAGTG GGCAGACTGC chr2R:21527375-21527495 34 2.69e-04 TGCTACTTCG ACACTGTG AGAAATCGGA chr2L:7544491-7544611 16 2.69e-04 CGATCGCGTC GCACAGTG GGCTGAAGAG chr3R:14386315-14386435 2 2.69e-04 T GCCCTGAA CTTTTTAAGA chr3L:15234647-15234767 13 2.69e-04 CACATAGTGC GCACAGTG GGCCCAAATC chr2R:15351229-15351349 86 2.69e-04 TCTGAACTCT ACACTGTG GAATTATTGA chr3R:6665436-6665556 107 3.36e-04 AGAATTTAGT GCAGGGCG GATGAG chr2L:7632930-7633050 48 3.36e-04 TTGGCTGCAA GCATTGCG TGTATTCCGT chrX:3931797-3931917 75 3.36e-04 tGGGTCAATA GCCGTGCA CCTTAGGTGC chr2R:20906653-20906773 108 3.80e-04 GTAGATGGCG CCAGTGCA ACATT chr2R:23668825-23668945 70 3.80e-04 GGTTGCGATG GCATTGCA CCTGCCTCTA chr3R:28857445-28857565 70 3.80e-04 ATTGTGGAGT GCATTGCA ATCTGCCTCA chr3R:27988931-27989051 109 3.80e-04 TTCTCGAAGT GCAGAGAG CGCG chr3R:10661377-10661497 25 3.80e-04 TTCTCTCAGT GCATTGCA GACACTGCTT chr3L:10845239-10845359 27 3.80e-04 ATTTTCGATG GCAGGGCA ACACTTGCGC chr3L:6220327-6220447 19 3.80e-04 ACTGACTTGC ACAGTGAG GCAAGTCCAC chr2L:3675969-3676089 106 3.80e-04 TGCTTGTGTG GCAGAGAG GGATGTA chr3L:3395509-3395629 55 3.80e-04 TTAGTTTCTC CCAGTGCA CCTGCCTCTG chr2L:11189188-11189308 5 4.21e-04 AGTT GCAGAGAA CTAAATGAAA chrX:5972158-5972278 69 4.21e-04 GTATATGAAA ACAGTGAA ATATTCATTT chr3L:15733496-15733616 64 4.21e-04 TTAAATTTCT GCCCTGTG TTCTATAGCT chrX:3096426-3096546 32 4.21e-04 AGGCTCAACG ACAGTGAA GATAGCACGA chr2R:14783025-14783145 105 4.45e-04 ATCCCTTGAC CCACTGTG CCCCAGCT chr2L:8554461-8554581 104 4.45e-04 TAGCGAGAAG CCACTGTG TTTGCGATT chr3R:5083174-5083294 96 4.45e-04 ATAAATCGGA GCCCTGTA AGTTTTCGAA chr3R:30814943-30815063 23 4.74e-04 CATTTTTGTT ACACAGCA AAAAATTGGA chrX:8884062-8884182 83 4.74e-04 GCCACAATTA ACACAGCA CGCAAATACA chrX:16690672-16690792 91 4.74e-04 TGGCCAGGCT CCACTGTA CGCCTGTCCA chr2L:8842295-8842415 18 6.05e-04 AGTTCAACTT GCAGGGAA AGTTTCTTTT chrX:16967564-16967684 53 6.34e-04 CTTGAGCGGC GAACTGCA CTCGGCAGGG chr2R:8358039-8358159 97 8.30e-04 TTGATTATCT GAACTGAG TAGATATGCG chr3L:18357795-18357915 91 9.06e-04 TAATTTATTT GAACTGAA AACAACTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGHR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15134337-15134457 3.7e-06 63_[+1]_49 chr3L:7521955-7522075 3.7e-06 38_[+1]_74 chr2L:18982257-18982377 1e-05 45_[+1]_67 chr3L:6885896-6886016 1e-05 97_[+1]_15 chr2L:7957049-7957169 1e-05 7_[+1]_105 chr3L:19178099-19178219 1e-05 53_[+1]_59 chr3R:8197216-8197336 1e-05 28_[+1]_84 chr2L:14701613-14701733 1.7e-05 2_[+1]_110 chr3R:9083456-9083576 1.7e-05 47_[+1]_65 chr3L:15304785-15304905 1.7e-05 34_[+1]_78 chr3L:11334086-11334206 2.8e-05 31_[+1]_81 chr3L:10931493-10931613 2.8e-05 33_[+1]_79 chr3R:11806900-11807020 2.8e-05 57_[+1]_55 chr3L:13068412-13068532 2.8e-05 19_[+1]_93 chr3L:1371070-1371190 2.8e-05 31_[+1]_81 chr3R:10626224-10626344 2.8e-05 45_[+1]_67 chr2L:1071089-1071209 3.8e-05 74_[+1]_38 chrX:12923412-12923532 3.8e-05 89_[+1]_23 chrX:17912147-17912267 3.8e-05 87_[+1]_25 chr3L:6059243-6059363 3.8e-05 60_[+1]_52 chr2R:14645106-14645226 4.5e-05 35_[+1]_77 chr3R:6949396-6949516 4.5e-05 27_[+1]_85 chr2R:8644854-8644974 5.6e-05 86_[+1]_26 chr3L:14971982-14972102 6.3e-05 48_[+1]_64 chrX:11081263-11081383 0.0001 25_[+1]_87 chr2L:3841084-3841204 0.0001 6_[+1]_106 chr3L:22162605-22162725 0.0001 32_[+1]_80 chr2R:10265445-10265565 0.0001 77_[+1]_35 chr3L:16768385-16768505 0.00012 8_[+1]_104 chr3L:22277381-22277501 0.00012 98_[+1]_14 chr3R:30164246-30164366 0.00012 80_[+1]_32 chr2L:19233490-19233610 0.00012 74_[+1]_38 chr2R:12218829-12218949 0.00013 43_[+1]_69 chrX:17713405-17713525 0.00016 7_[+1]_105 chrX:20507861-20507981 0.00016 4_[+1]_108 chr2L:19377508-19377628 0.00016 59_[+1]_53 chr2L:11950006-11950126 0.00016 24_[+1]_88 chr3L:4413137-4413257 0.00016 50_[+1]_62 chr3L:3449763-3449883 0.00016 36_[+1]_76 chrX:17780439-17780559 0.00016 4_[+1]_108 chr3R:31704593-31704713 0.00016 42_[+1]_70 chr3L:1464580-1464700 0.00016 105_[+1]_7 chr3L:10784598-10784718 0.0002 51_[+1]_61 chr2L:11417613-11417733 0.0002 3_[+1]_109 chr2L:20721569-20721689 0.0002 3_[+1]_109 chr3L:2884552-2884672 0.0002 [+1]_112 chr3R:8072745-8072865 0.0002 51_[+1]_61 chr3R:21850232-21850352 0.00021 17_[+1]_95 chr3L:4158514-4158634 0.00023 108_[+1]_4 chr3L:1358481-1358601 0.00023 87_[+1]_25 chr3L:1031097-1031217 0.00027 81_[+1]_31 chr2R:21527375-21527495 0.00027 33_[+1]_79 chr2L:7544491-7544611 0.00027 15_[+1]_97 chr3R:14386315-14386435 0.00027 1_[+1]_111 chr3L:15234647-15234767 0.00027 12_[+1]_100 chr2R:15351229-15351349 0.00027 85_[+1]_27 chr3R:6665436-6665556 0.00034 106_[+1]_6 chr2L:7632930-7633050 0.00034 47_[+1]_65 chrX:3931797-3931917 0.00034 74_[+1]_38 chr2R:20906653-20906773 0.00038 107_[+1]_5 chr2R:23668825-23668945 0.00038 69_[+1]_43 chr3R:28857445-28857565 0.00038 69_[+1]_43 chr3R:27988931-27989051 0.00038 108_[+1]_4 chr3R:10661377-10661497 0.00038 24_[+1]_88 chr3L:10845239-10845359 0.00038 26_[+1]_86 chr3L:6220327-6220447 0.00038 18_[+1]_94 chr2L:3675969-3676089 0.00038 105_[+1]_7 chr3L:3395509-3395629 0.00038 54_[+1]_58 chr2L:11189188-11189308 0.00042 4_[+1]_108 chrX:5972158-5972278 0.00042 68_[+1]_44 chr3L:15733496-15733616 0.00042 63_[+1]_49 chrX:3096426-3096546 0.00042 31_[+1]_81 chr2R:14783025-14783145 0.00044 104_[+1]_8 chr2L:8554461-8554581 0.00044 103_[+1]_9 chr3R:5083174-5083294 0.00044 95_[+1]_17 chr3R:30814943-30815063 0.00047 22_[+1]_90 chrX:8884062-8884182 0.00047 82_[+1]_30 chrX:16690672-16690792 0.00047 90_[+1]_22 chr2L:8842295-8842415 0.0006 17_[+1]_95 chrX:16967564-16967684 0.00063 52_[+1]_60 chr2R:8358039-8358159 0.00083 96_[+1]_16 chr3L:18357795-18357915 0.00091 90_[+1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGHR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGHR width=8 seqs=82 chr2R:15134337-15134457 ( 64) GCACTGCG 1 chr3L:7521955-7522075 ( 39) GCACTGCG 1 chr2L:18982257-18982377 ( 46) GCACTGCA 1 chr3L:6885896-6886016 ( 98) GCACTGCA 1 chr2L:7957049-7957169 ( 8) GCACTGCA 1 chr3L:19178099-19178219 ( 54) GCACTGCA 1 chr3R:8197216-8197336 ( 29) GCACTGCA 1 chr2L:14701613-14701733 ( 3) GCACTGAG 1 chr3R:9083456-9083576 ( 48) GCACTGAG 1 chr3L:15304785-15304905 ( 35) GCACTGAG 1 chr3L:11334086-11334206 ( 32) GCACTGAA 1 chr3L:10931493-10931613 ( 34) GCACTGAA 1 chr3R:11806900-11807020 ( 58) GCACTGAA 1 chr3L:13068412-13068532 ( 20) GCACTGAA 1 chr3L:1371070-1371190 ( 32) GCACTGAA 1 chr3R:10626224-10626344 ( 46) GCACTGAA 1 chr2L:1071089-1071209 ( 75) GCAGTGCA 1 chrX:12923412-12923532 ( 90) GCAGTGCA 1 chrX:17912147-17912267 ( 88) GCAGTGCA 1 chr3L:6059243-6059363 ( 61) GCAGTGCA 1 chr2R:14645106-14645226 ( 36) GCACTGTG 1 chr3R:6949396-6949516 ( 28) GCACTGTG 1 chr2R:8644854-8644974 ( 87) GCACTGTA 1 chr3L:14971982-14972102 ( 49) GCAGTGAG 1 chrX:11081263-11081383 ( 26) GCACAGCA 1 chr2L:3841084-3841204 ( 7) GCACAGCA 1 chr3L:22162605-22162725 ( 33) GCACAGCA 1 chr2R:10265445-10265565 ( 78) ACACTGCA 1 chr3L:16768385-16768505 ( 9) GCAGTGTA 1 chr3L:22277381-22277501 ( 99) GCAGTGTA 1 chr3R:30164246-30164366 ( 81) GCAGTGTA 1 chr2L:19233490-19233610 ( 75) GCAGTGTA 1 chr2R:12218829-12218949 ( 44) GCCCTGCA 1 chrX:17713405-17713525 ( 8) GCACAGAG 1 chrX:20507861-20507981 ( 5) ACACTGAG 1 chr2L:19377508-19377628 ( 60) ACACTGAG 1 chr2L:11950006-11950126 ( 25) ACACTGAG 1 chr3L:4413137-4413257 ( 51) GCACTGGG 1 chr3L:3449763-3449883 ( 37) ACACTGAG 1 chrX:17780439-17780559 ( 5) CCACTGCA 1 chr3R:31704593-31704713 ( 43) GCACTGGG 1 chr3L:1464580-1464700 ( 106) GCACGGCA 1 chr3L:10784598-10784718 ( 52) ACACTGAA 1 chr2L:11417613-11417733 ( 4) ACACTGAA 1 chr2L:20721569-20721689 ( 4) ACACTGAA 1 chr3L:2884552-2884672 ( 1) GCACTGGA 1 chr3R:8072745-8072865 ( 52) ACACTGAA 1 chr3R:21850232-21850352 ( 18) ACAGTGCG 1 chr3L:4158514-4158634 ( 109) ACAGTGCA 1 chr3L:1358481-1358601 ( 88) ACAGTGCA 1 chr3L:1031097-1031217 ( 82) GCACAGTG 1 chr2R:21527375-21527495 ( 34) ACACTGTG 1 chr2L:7544491-7544611 ( 16) GCACAGTG 1 chr3R:14386315-14386435 ( 2) GCCCTGAA 1 chr3L:15234647-15234767 ( 13) GCACAGTG 1 chr2R:15351229-15351349 ( 86) ACACTGTG 1 chr3R:6665436-6665556 ( 107) GCAGGGCG 1 chr2L:7632930-7633050 ( 48) GCATTGCG 1 chrX:3931797-3931917 ( 75) GCCGTGCA 1 chr2R:20906653-20906773 ( 108) CCAGTGCA 1 chr2R:23668825-23668945 ( 70) GCATTGCA 1 chr3R:28857445-28857565 ( 70) GCATTGCA 1 chr3R:27988931-27989051 ( 109) GCAGAGAG 1 chr3R:10661377-10661497 ( 25) GCATTGCA 1 chr3L:10845239-10845359 ( 27) GCAGGGCA 1 chr3L:6220327-6220447 ( 19) ACAGTGAG 1 chr2L:3675969-3676089 ( 106) GCAGAGAG 1 chr3L:3395509-3395629 ( 55) CCAGTGCA 1 chr2L:11189188-11189308 ( 5) GCAGAGAA 1 chrX:5972158-5972278 ( 69) ACAGTGAA 1 chr3L:15733496-15733616 ( 64) GCCCTGTG 1 chrX:3096426-3096546 ( 32) ACAGTGAA 1 chr2R:14783025-14783145 ( 105) CCACTGTG 1 chr2L:8554461-8554581 ( 104) CCACTGTG 1 chr3R:5083174-5083294 ( 96) GCCCTGTA 1 chr3R:30814943-30815063 ( 23) ACACAGCA 1 chrX:8884062-8884182 ( 83) ACACAGCA 1 chrX:16690672-16690792 ( 91) CCACTGTA 1 chr2L:8842295-8842415 ( 18) GCAGGGAA 1 chrX:16967564-16967684 ( 53) GAACTGCA 1 chr2R:8358039-8358159 ( 97) GAACTGAG 1 chr3L:18357795-18357915 ( 91) GAACTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGHR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.70356 E= 1.8e-004 -47 -132 193 -1300 -313 240 -1300 -1300 155 -158 -1300 -1300 -1300 185 68 -269 -113 -1300 -190 135 -1300 -1300 246 -1300 14 114 -232 -60 99 -1300 101 -1300 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGHR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 1.8e-004 0.231707 0.073171 0.695122 0.000000 0.036585 0.963415 0.000000 0.000000 0.939024 0.060976 0.000000 0.000000 0.000000 0.658537 0.292683 0.048780 0.146341 0.000000 0.048780 0.804878 0.000000 0.000000 1.000000 0.000000 0.353659 0.402439 0.036585 0.207317 0.634146 0.000000 0.365854 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGHR MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CA[CG]TG[CAT][AG] -------------------------------------------------------------------------------- Time 7.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGGYGKG MEME-2 width = 8 sites = 8 llr = 89 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGYGKG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::5::: probability G :aaa:a5a matrix T a:::5:5: bits 2.5 *** * * 2.2 *** * * 2.0 *** * * 1.7 **** * * Relative 1.5 **** * * Entropy 1.2 **** * * (16.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGGCGGG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGYGKG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5300711-5300831 24 2.10e-06 AGTGCCTTGG TGGGCGGG GCTCTATTGG chr2R:15034864-15034984 58 2.10e-06 TAGTCGAAGC TGGGCGGG AATTATCTAT chr3L:7521955-7522075 53 2.10e-06 TGCGAGAAAT TGGGCGGG CTTATCTTTC chr3R:6665436-6665556 16 9.33e-06 CTTGAGGGGG TGGGTGGG ACGTTGGGGG chr3R:4974946-4975066 93 9.33e-06 ggcgttcgag tgggcgtg tctagcttct chr3R:16771680-16771800 113 1.56e-05 TTTCAAAACT TGGGTGTG chr2R:21527375-21527495 3 1.56e-05 AA TGGGTGTG ATGAATTCCA chr3L:15234647-15234767 47 1.56e-05 GTGCCAGCTG TGGGTGTG AACCTGCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGYGKG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5300711-5300831 2.1e-06 23_[+2]_89 chr2R:15034864-15034984 2.1e-06 57_[+2]_55 chr3L:7521955-7522075 2.1e-06 52_[+2]_60 chr3R:6665436-6665556 9.3e-06 15_[+2]_97 chr3R:4974946-4975066 9.3e-06 92_[+2]_20 chr3R:16771680-16771800 1.6e-05 112_[+2] chr2R:21527375-21527495 1.6e-05 2_[+2]_110 chr3L:15234647-15234767 1.6e-05 46_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGYGKG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGYGKG width=8 seqs=8 chr3R:5300711-5300831 ( 24) TGGGCGGG 1 chr2R:15034864-15034984 ( 58) TGGGCGGG 1 chr3L:7521955-7522075 ( 53) TGGGCGGG 1 chr3R:6665436-6665556 ( 16) TGGGTGGG 1 chr3R:4974946-4975066 ( 93) TGGGCGTG 1 chr3R:16771680-16771800 ( 113) TGGGTGTG 1 chr2R:21527375-21527495 ( 3) TGGGTGTG 1 chr3L:15234647-15234767 ( 47) TGGGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGYGKG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 1.1e+004 -965 -965 -965 167 -965 -965 246 -965 -965 -965 246 -965 -965 -965 246 -965 -965 145 -965 67 -965 -965 246 -965 -965 -965 146 67 -965 -965 246 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGYGKG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGYGKG MEME-2 regular expression -------------------------------------------------------------------------------- TGGG[CT]G[GT]G -------------------------------------------------------------------------------- Time 14.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCGCCM MEME-3 width = 8 sites = 8 llr = 90 E-value = 6.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCGCCM MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::6 pos.-specific C :::a1aa4 probability G 3aa:9::: matrix T 8::::::: bits 2.5 *** ** 2.2 *** ** 2.0 ****** 1.7 ****** Relative 1.5 ****** Entropy 1.2 ****** (16.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGCGCCA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8604424-8604544 111 5.85e-06 TTCAAATCTC TGGCGCCC AC chrX:6110017-6110137 87 5.85e-06 GGACGCCAGG TGGCGCCA CACATGTAGT chr2R:12274363-12274483 46 5.85e-06 TGCCGAAAGA TGGCGCCC ATGGCGCACT chr2L:1362380-1362500 25 5.85e-06 ATTCCGTTTG TGGCGCCA TCTCTTCGCA chr3L:19178099-19178219 93 5.85e-06 AGTGTACTTC TGGCGCCC TCTGTTGACC chrX:16967564-16967684 70 9.24e-06 ACTCGGCAGG GGGCGCCA CAACGACGTC chr3R:28805219-28805339 17 9.24e-06 AGCGTTACTT GGGCGCCA ACGGCCAACG chr3L:22162605-22162725 3 1.51e-05 AG TGGCCCCA GGACTCTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8604424-8604544 5.9e-06 110_[+3]_2 chrX:6110017-6110137 5.9e-06 86_[+3]_26 chr2R:12274363-12274483 5.9e-06 45_[+3]_67 chr2L:1362380-1362500 5.9e-06 24_[+3]_88 chr3L:19178099-19178219 5.9e-06 92_[+3]_20 chrX:16967564-16967684 9.2e-06 69_[+3]_43 chr3R:28805219-28805339 9.2e-06 16_[+3]_96 chr3L:22162605-22162725 1.5e-05 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCGCCM width=8 seqs=8 chr3L:8604424-8604544 ( 111) TGGCGCCC 1 chrX:6110017-6110137 ( 87) TGGCGCCA 1 chr2R:12274363-12274483 ( 46) TGGCGCCC 1 chr2L:1362380-1362500 ( 25) TGGCGCCA 1 chr3L:19178099-19178219 ( 93) TGGCGCCC 1 chrX:16967564-16967684 ( 70) GGGCGCCA 1 chr3R:28805219-28805339 ( 17) GGGCGCCA 1 chr3L:22162605-22162725 ( 3) TGGCCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 6.8e+003 -965 -965 46 125 -965 -965 246 -965 -965 -965 246 -965 -965 245 -965 -965 -965 -55 226 -965 -965 245 -965 -965 -965 245 -965 -965 96 104 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.8e+003 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCGCCM MEME-3 regular expression -------------------------------------------------------------------------------- [TG]GGCGCC[AC] -------------------------------------------------------------------------------- Time 20.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCTCTC MEME-4 width = 8 sites = 17 llr = 159 E-value = 1.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCTCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:8:8 probability G ::::::22 matrix T aaa:a28: bits 2.5 * 2.2 * 2.0 * 1.7 ***** * Relative 1.5 ****** * Entropy 1.2 ******** (13.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTCTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:6885896-6886016 49 1.90e-05 TCCTGCTAAG TTTCTCTC AGTGCAGCGT chr3R:10661377-10661497 14 1.90e-05 TATTGCATAT TTTCTCTC AGTGCATTGC chr2L:3601000-3601120 104 1.90e-05 GCCATAGTAA TTTCTCTC AGTGCCAAC chr3R:29550107-29550227 112 1.90e-05 GCTTGCCCAT TTTCTCTC C chr2R:23003254-23003374 113 1.90e-05 GCACTTTTGC TTTCTCTC chrX:5604325-5604445 104 1.90e-05 GCCGAACTAT TTTCTCTC AGTGTAGGC chr3R:10681699-10681819 73 1.90e-05 ATACTACATT TTTCTCTC AGTGGTCTTT chr3L:627885-628005 69 3.00e-05 TTAATGAAAA TTTCTCGC TGTGCTTAGA chr2L:20370311-20370431 110 3.00e-05 AAATTCTGAA TTTCTCGC AGT chr2R:8644854-8644974 51 3.00e-05 GCATTGTAAG TTTCTCGC TGGACACAGT chr2R:20601178-20601298 79 4.89e-05 TCCAGCCCCG TTTCTCTG CAATTTAATT chr2L:9779276-9779396 30 4.89e-05 aatattgaaa tttctctg atctgatggt chr3R:19339341-19339461 103 4.89e-05 TTCCTAACAT TTTCTCTG ATTGCGATAG chr3R:11806900-11807020 85 8.16e-05 TCCTCACTAT TTTCTTTC TAGAAAATAA chr3R:14386315-14386435 96 8.16e-05 AGTTTCGAAT TTTCTTTC AGTGTCGGCG chr2L:3675969-3676089 69 8.16e-05 GATGCCAACT TTTCTTTC AGTGCACAAT chrX:17471813-17471933 40 8.16e-05 ttaatataga tttCTTTC CTTGCAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6885896-6886016 1.9e-05 48_[+4]_64 chr3R:10661377-10661497 1.9e-05 13_[+4]_99 chr2L:3601000-3601120 1.9e-05 103_[+4]_9 chr3R:29550107-29550227 1.9e-05 111_[+4]_1 chr2R:23003254-23003374 1.9e-05 112_[+4] chrX:5604325-5604445 1.9e-05 103_[+4]_9 chr3R:10681699-10681819 1.9e-05 72_[+4]_40 chr3L:627885-628005 3e-05 68_[+4]_44 chr2L:20370311-20370431 3e-05 109_[+4]_3 chr2R:8644854-8644974 3e-05 50_[+4]_62 chr2R:20601178-20601298 4.9e-05 78_[+4]_34 chr2L:9779276-9779396 4.9e-05 29_[+4]_83 chr3R:19339341-19339461 4.9e-05 102_[+4]_10 chr3R:11806900-11807020 8.2e-05 84_[+4]_28 chr3R:14386315-14386435 8.2e-05 95_[+4]_17 chr2L:3675969-3676089 8.2e-05 68_[+4]_44 chrX:17471813-17471933 8.2e-05 39_[+4]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCTCTC width=8 seqs=17 chr3L:6885896-6886016 ( 49) TTTCTCTC 1 chr3R:10661377-10661497 ( 14) TTTCTCTC 1 chr2L:3601000-3601120 ( 104) TTTCTCTC 1 chr3R:29550107-29550227 ( 112) TTTCTCTC 1 chr2R:23003254-23003374 ( 113) TTTCTCTC 1 chrX:5604325-5604445 ( 104) TTTCTCTC 1 chr3R:10681699-10681819 ( 73) TTTCTCTC 1 chr3L:627885-628005 ( 69) TTTCTCGC 1 chr2L:20370311-20370431 ( 110) TTTCTCGC 1 chr2R:8644854-8644974 ( 51) TTTCTCGC 1 chr2R:20601178-20601298 ( 79) TTTCTCTG 1 chr2L:9779276-9779396 ( 30) TTTCTCTG 1 chr3R:19339341-19339461 ( 103) TTTCTCTG 1 chr3R:11806900-11807020 ( 85) TTTCTTTC 1 chr3R:14386315-14386435 ( 96) TTTCTTTC 1 chr2L:3675969-3676089 ( 69) TTTCTTTC 1 chrX:17471813-17471933 ( 40) TTTCTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 1.5e+005 -1073 -1073 -1073 167 -1073 -1073 -1073 167 -1073 -1073 -1073 167 -1073 245 -1073 -1073 -1073 -1073 -1073 167 -1073 207 -1073 -42 -1073 -1073 -5 139 -1073 217 -5 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.5e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.764706 0.000000 0.235294 0.000000 0.000000 0.176471 0.823529 0.000000 0.823529 0.176471 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTCTC MEME-4 regular expression -------------------------------------------------------------------------------- TTTCT[CT]TC -------------------------------------------------------------------------------- Time 26.81 secs. ******************************************************************************** ******************************************************************************** MOTIF WGAKGGCG MEME-5 width = 8 sites = 8 llr = 87 E-value = 2.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGAKGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 5:a::::: pos.-specific C ::::::a: probability G :a:5aa:a matrix T 5::5:::: bits 2.5 * **** 2.2 * **** 2.0 * **** 1.7 ** **** Relative 1.5 ** **** Entropy 1.2 ** **** (15.6 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGGGCG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAKGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18921422-18921542 89 7.43e-06 AACTCTTATT TGAGGGCG AAATTATTTC chr3R:5300711-5300831 49 7.43e-06 TGGCCCTAAT AGAGGGCG TGGGCATTGT chr3L:8748989-8749109 76 7.43e-06 CTCAACATAT AGAGGGCG TATGTGAATG chr3R:4974946-4975066 79 7.43e-06 gtcggcggct tgagggcg ttcgagtggg chr2R:20906653-20906773 100 2.03e-05 TACCAACGGT AGATGGCG CCAGTGCAAC chrX:20507861-20507981 60 2.03e-05 AGAGGAGGTG AGATGGCG AGAAAGGTTT chrX:8671461-8671581 37 2.03e-05 GTGGGCTCGA TGATGGCG TTTGAATGTG chr2L:3012882-3013002 75 2.03e-05 AGAATTTCTA TGATGGCG TGTCCTAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAKGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18921422-18921542 7.4e-06 88_[+5]_24 chr3R:5300711-5300831 7.4e-06 48_[+5]_64 chr3L:8748989-8749109 7.4e-06 75_[+5]_37 chr3R:4974946-4975066 7.4e-06 78_[+5]_34 chr2R:20906653-20906773 2e-05 99_[+5]_13 chrX:20507861-20507981 2e-05 59_[+5]_53 chrX:8671461-8671581 2e-05 36_[+5]_76 chr2L:3012882-3013002 2e-05 74_[+5]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAKGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGAKGGCG width=8 seqs=8 chr2L:18921422-18921542 ( 89) TGAGGGCG 1 chr3R:5300711-5300831 ( 49) AGAGGGCG 1 chr3L:8748989-8749109 ( 76) AGAGGGCG 1 chr3R:4974946-4975066 ( 79) TGAGGGCG 1 chr2R:20906653-20906773 ( 100) AGATGGCG 1 chrX:20507861-20507981 ( 60) AGATGGCG 1 chrX:8671461-8671581 ( 37) TGATGGCG 1 chr2L:3012882-3013002 ( 75) TGATGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAKGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 2.2e+005 64 -965 -965 67 -965 -965 246 -965 164 -965 -965 -965 -965 -965 146 67 -965 -965 246 -965 -965 -965 246 -965 -965 245 -965 -965 -965 -965 246 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAKGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+005 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGAKGGCG MEME-5 regular expression -------------------------------------------------------------------------------- [AT]GA[GT]GGCG -------------------------------------------------------------------------------- Time 33.11 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10681699-10681819 1.22e-02 72_[+4(1.90e-05)]_40 chr2L:7292072-7292192 3.24e-01 120 chrX:5604325-5604445 1.83e-01 103_[+4(1.90e-05)]_9 chr3L:19446905-19447025 8.70e-01 120 chr3R:10626224-10626344 1.07e-02 45_[+1(2.82e-05)]_67 chr2R:10265445-10265565 2.26e-01 120 chr2L:7298877-7298997 6.00e-01 120 chr3R:5871544-5871664 6.52e-01 120 chr3L:7521955-7522075 6.32e-06 38_[+1(3.72e-06)]_6_[+2(2.10e-06)]_\ 60 chrX:17471813-17471933 6.15e-02 39_[+4(8.16e-05)]_73 chr3L:10337662-10337782 9.80e-01 120 chr2R:23003254-23003374 2.33e-01 112_[+4(1.90e-05)] chr3L:10515034-10515154 9.53e-02 64_[+4(4.89e-05)]_48 chr3R:5083174-5083294 2.64e-01 120 chr3R:8072745-8072865 9.30e-02 120 chrX:8444431-8444551 7.06e-02 6_[+5(5.25e-05)]_106 chr3R:28562953-28563073 9.95e-01 120 chr2R:5108990-5109110 7.97e-01 120 chrX:3096426-3096546 4.82e-01 120 chr2L:3435194-3435314 8.69e-01 120 chr2L:15249830-15249950 8.01e-01 120 chr3R:16907907-16908027 9.54e-01 120 chr3L:6059243-6059363 2.13e-01 60_[+1(3.85e-05)]_52 chr3R:8197216-8197336 5.92e-02 28_[+1(1.03e-05)]_84 chr3R:29550107-29550227 1.25e-01 111_[+4(1.90e-05)]_1 chr3R:30932212-30932332 6.89e-01 120 chr2R:15351229-15351349 5.73e-01 120 chr3L:1371070-1371190 5.43e-02 31_[+1(2.82e-05)]_81 chr3L:22162605-22162725 3.79e-03 2_[+3(1.51e-05)]_110 chr2R:23202159-23202279 9.30e-01 120 chr3R:28805219-28805339 2.90e-03 16_[+3(9.24e-06)]_96 chr3L:1464580-1464700 1.56e-02 120 chr2L:3841084-3841204 4.75e-01 120 chr2R:8644854-8644974 9.27e-03 50_[+4(3.00e-05)]_28_[+1(5.61e-05)]_\ 26 chrX:20586147-20586267 7.37e-02 120 chr3R:16673373-16673493 3.17e-01 120 chr3R:13885131-13885251 9.10e-01 120 chr3L:15847765-15847885 8.81e-01 120 chr3L:15733496-15733616 4.73e-01 120 chr3L:3395509-3395629 1.39e-02 120 chrX:19453282-19453402 5.01e-01 120 chr2R:14312347-14312467 1.13e-01 120 chr3L:18357795-18357915 5.48e-01 120 chr3L:14971982-14972102 2.55e-02 48_[+1(6.26e-05)]_64 chr3L:2884552-2884672 5.81e-01 120 chrX:16690672-16690792 5.14e-02 120 chr2L:6794988-6795108 6.76e-01 120 chr3L:19178099-19178219 4.93e-04 53_[+1(1.03e-05)]_31_[+3(5.85e-06)]_\ 20 chr3R:4974946-4975066 3.24e-05 [+5(6.82e-05)]_44_[+5(6.82e-05)]_18_\ [+5(7.43e-06)]_6_[+2(9.33e-06)]_20 chrX:12249003-12249123 6.79e-01 120 chr3R:17231680-17231800 5.91e-02 120 chr2L:8842295-8842415 6.95e-02 120 chr2L:20370311-20370431 2.77e-01 109_[+4(3.00e-05)]_3 chr2L:3819075-3819195 8.95e-01 120 chr2L:3601000-3601120 1.30e-01 103_[+4(1.90e-05)]_9 chr2L:14376951-14377071 9.95e-01 120 chrX:9048562-9048682 2.39e-01 120 chr3R:6949396-6949516 7.30e-02 17_[+1(4.49e-05)]_2_[+1(4.49e-05)]_\ 85 chrX:17912147-17912267 1.16e-04 81_[+4(3.00e-05)]_31 chr2L:7957049-7957169 6.86e-02 7_[+1(1.03e-05)]_105 chr3R:27619335-27619455 9.95e-01 120 chrX:12241184-12241304 8.44e-01 120 chr2R:20079870-20079990 3.24e-01 120 chr2L:15337363-15337483 7.98e-01 120 chr2R:9071768-9071888 6.27e-02 120 chr3L:10962305-10962425 7.32e-02 120 chrX:18902913-18903033 9.25e-01 120 chr2L:3675969-3676089 2.38e-02 68_[+4(8.16e-05)]_44 chrX:12923412-12923532 5.69e-04 83_[+4(3.00e-05)]_29 chrX:9295681-9295801 9.84e-01 120 chr3L:3882208-3882328 7.17e-01 120 chr2R:10439006-10439126 7.96e-01 120 chr3R:30501256-30501376 2.84e-01 120 chrX:2036915-2037035 9.91e-01 120 chr2R:10681459-10681579 8.30e-01 120 chr2R:8358039-8358159 2.09e-01 120 chr3L:15794423-15794543 7.41e-01 120 chr2L:1362380-1362500 1.70e-02 24_[+3(5.85e-06)]_88 chr2L:1071089-1071209 1.14e-02 74_[+1(3.85e-05)]_38 chr3L:6981886-6982006 2.56e-01 120 chr2R:12274363-12274483 3.06e-04 45_[+3(5.85e-06)]_67 chr2L:11338430-11338550 3.01e-01 120 chr3L:15304785-15304905 8.61e-02 34_[+1(1.68e-05)]_78 chr3L:13068412-13068532 8.95e-02 19_[+1(2.82e-05)]_93 chr3L:15234647-15234767 1.04e-03 46_[+2(1.56e-05)]_66 chrX:14583349-14583469 9.99e-01 120 chr3L:15672954-15673074 4.46e-01 120 chr3L:11429758-11429878 2.30e-01 120 chr3L:1358481-1358601 2.03e-02 120 chr3R:31704593-31704713 8.01e-02 120 chr2L:8552728-8552848 4.90e-02 120 chr2R:15134337-15134457 1.56e-02 63_[+1(3.72e-06)]_49 chrX:3931797-3931917 2.03e-01 120 chr3L:13356230-13356350 5.40e-01 120 chr3R:23300762-23300882 2.27e-02 104_[+4(3.00e-05)]_8 chr2R:18325058-18325178 1.98e-01 120 chr3R:29265277-29265397 9.53e-01 120 chr2L:8554461-8554581 1.96e-01 120 chr3R:9083456-9083576 1.35e-02 47_[+1(1.68e-05)]_65 chrX:14247450-14247570 2.52e-01 120 chr3L:6220327-6220447 6.21e-01 120 chrX:2050706-2050826 1.71e-01 120 chr3R:9494309-9494429 8.55e-01 120 chrX:6110017-6110137 5.53e-04 86_[+3(5.85e-06)]_26 chrX:8884062-8884182 7.96e-03 19_[+5(6.82e-05)]_93 chr2L:7175962-7176082 1.78e-01 120 chrX:17780439-17780559 1.42e-01 120 chr2R:9660206-9660326 7.73e-01 120 chr3L:6797502-6797622 6.82e-01 120 chr3L:3449763-3449883 6.72e-02 120 chr2L:14701613-14701733 9.22e-02 2_[+1(1.68e-05)]_110 chr2L:3775964-3776084 1.70e-01 120 chr2L:3012882-3013002 1.82e-02 74_[+5(2.03e-05)]_38 chr3R:19339341-19339461 7.88e-02 102_[+4(4.89e-05)]_10 chr3R:22260351-22260471 8.25e-01 120 chr3L:8604424-8604544 5.27e-02 110_[+3(5.85e-06)]_2 chr3R:29548883-29549003 2.70e-01 120 chr3L:5857086-5857206 3.61e-01 120 chr2R:1345195-1345315 7.60e-01 120 chr2L:19233490-19233610 1.57e-01 120 chr2R:16097020-16097140 5.76e-01 120 chr2R:12218829-12218949 6.69e-03 120 chr2R:11809442-11809562 5.78e-01 120 chr2R:14783025-14783145 1.14e-01 120 chr2L:20721569-20721689 2.81e-01 120 chr3R:10648914-10649034 4.94e-01 120 chrX:18525018-18525138 9.88e-01 120 chr2L:18899983-18900103 5.63e-01 120 chrX:10825452-10825572 1.14e-01 120 chrX:8671461-8671581 2.38e-02 36_[+5(2.03e-05)]_76 chr3L:8748989-8749109 8.62e-03 75_[+5(7.43e-06)]_37 chr2L:18895191-18895311 9.12e-01 120 chrX:12947804-12947924 8.38e-01 120 chr3R:19113933-19114053 5.66e-01 120 chr2R:7077054-7077174 9.10e-01 120 chrX:1083265-1083385 5.77e-01 120 chr3L:14166364-14166484 2.56e-01 120 chr3L:4413137-4413257 4.30e-01 120 chr3R:23872972-23873092 7.95e-01 120 chr3R:6723975-6724095 7.47e-01 120 chr2L:11950006-11950126 8.13e-02 120 chr3L:9042721-9042841 1.01e-01 120 chr3R:30164246-30164366 1.92e-01 120 chr3L:11303977-11304097 8.92e-01 120 chr2L:9779276-9779396 1.12e-01 29_[+4(4.89e-05)]_83 chrX:4262793-4262913 9.12e-01 120 chr3R:23445448-23445568 5.40e-01 120 chr3R:30814943-30815063 1.22e-01 120 chr3R:27289764-27289884 2.61e-01 120 chr2L:20327566-20327686 5.39e-02 120 chr3R:14386315-14386435 3.60e-03 95_[+4(8.16e-05)]_17 chr2L:19377508-19377628 4.47e-01 120 chr3L:908685-908805 5.70e-01 120 chr3L:14411057-14411177 8.66e-01 120 chr2L:15908521-15908641 6.05e-01 120 chr2R:12173436-12173556 7.07e-01 120 chr2R:14645106-14645226 2.74e-02 35_[+1(4.49e-05)]_77 chr3R:11806900-11807020 2.04e-02 57_[+1(2.82e-05)]_19_[+4(8.16e-05)]_\ 28 chrX:10067669-10067789 2.21e-01 120 chr2L:7544491-7544611 6.59e-02 120 chr2L:3533240-3533360 4.95e-01 120 chr3L:1216589-1216709 8.15e-01 120 chr3L:1084500-1084620 9.91e-01 120 chr2R:15034864-15034984 1.80e-03 57_[+2(2.10e-06)]_55 chr3L:10845239-10845359 8.58e-03 120 chr3R:18914083-18914203 3.57e-01 120 chrX:20507861-20507981 1.79e-03 59_[+5(2.03e-05)]_53 chr3L:15235265-15235385 6.58e-01 120 chrX:20644125-20644245 5.91e-01 120 chr2L:4915833-4915953 6.50e-01 120 chr2L:11417613-11417733 2.70e-01 120 chr3R:21612956-21613076 8.81e-01 120 chr3L:22277381-22277501 2.71e-02 120 chr2L:7632930-7633050 2.29e-01 120 chr3L:18250840-18250960 9.07e-01 120 chrX:3367443-3367563 6.82e-01 120 chr3R:10661377-10661497 7.63e-04 13_[+4(1.90e-05)]_99 chr3L:11336409-11336529 9.96e-01 120 chrX:5639205-5639325 6.77e-01 120 chr2L:7532767-7532887 9.38e-01 120 chr3R:27988931-27989051 1.26e-02 120 chr2R:21527375-21527495 2.24e-02 2_[+2(1.56e-05)]_110 chrX:3068415-3068535 8.29e-01 120 chr2L:14562356-14562476 9.97e-01 120 chr3R:28857445-28857565 3.04e-02 120 chr3R:22664405-22664525 7.68e-01 120 chrX:5972158-5972278 1.08e-02 120 chr2R:14305282-14305402 9.07e-01 120 chr3R:21850232-21850352 3.76e-01 120 chr3L:18349434-18349554 4.64e-01 120 chrX:19146389-19146509 1.49e-01 120 chrX:6801092-6801212 6.49e-01 120 chr3R:5300711-5300831 3.44e-06 23_[+2(2.10e-06)]_17_[+5(7.43e-06)]_\ 64 chr2L:19376284-19376404 4.42e-01 120 chr3R:30767234-30767354 3.36e-01 120 chr3L:614906-615026 1.69e-01 120 chr2L:4056934-4057054 5.75e-01 120 chr3L:18272461-18272581 9.40e-01 120 chrX:17510712-17510832 5.13e-01 120 chr3L:6885896-6886016 1.24e-03 48_[+4(1.90e-05)]_41_[+1(1.03e-05)]_\ 15 chr3R:25445674-25445794 9.81e-01 120 chr2R:20601178-20601298 5.35e-04 31_[+3(2.43e-05)]_39_[+4(4.89e-05)]_\ 34 chr3R:21993064-21993184 9.85e-01 120 chr2R:23578513-23578633 7.86e-01 120 chr3L:16760343-16760463 4.51e-01 120 chrX:17713405-17713525 2.76e-01 120 chr2R:7054227-7054347 6.19e-01 120 chr3L:4158514-4158634 2.47e-02 120 chr3L:1031097-1031217 5.08e-02 120 chrX:8755474-8755594 9.18e-01 120 chr3L:1414188-1414308 5.67e-01 120 chr2R:15835499-15835619 8.03e-01 120 chr2R:23668825-23668945 1.85e-02 120 chr3L:9028189-9028309 3.74e-01 120 chr3L:5987769-5987889 9.66e-01 120 chr3L:16749875-16749995 7.76e-01 120 chr2R:22886142-22886262 7.38e-01 120 chr3L:16768385-16768505 2.43e-01 120 chr2L:18982257-18982377 8.55e-02 45_[+1(1.03e-05)]_67 chr3R:10628467-10628587 5.84e-01 120 chrX:7945496-7945616 1.85e-01 120 chr3L:10784598-10784718 7.68e-02 120 chrX:21117040-21117160 4.17e-02 120 chr2L:18921422-18921542 2.63e-02 88_[+5(7.43e-06)]_24 chr2L:10516915-10517035 4.67e-01 120 chr2L:13905412-13905532 5.31e-01 120 chr2R:13261828-13261948 8.89e-01 120 chr3R:16771680-16771800 1.96e-02 112_[+2(1.56e-05)] chr2L:3444924-3445044 8.29e-01 120 chr3L:20630788-20630908 1.57e-01 120 chr3L:9461760-9461880 4.71e-01 120 chr3L:10931493-10931613 4.56e-03 33_[+1(2.82e-05)]_79 chr2L:11189188-11189308 7.27e-01 120 chr3R:29211211-29211331 9.26e-01 120 chr3L:627885-628005 6.77e-02 68_[+4(3.00e-05)]_44 chrX:16967564-16967684 3.27e-05 31_[+3(3.37e-05)]_30_[+3(9.24e-06)]_\ 43 chr3R:30263828-30263948 5.15e-01 120 chr3R:6665436-6665556 4.34e-05 15_[+2(9.33e-06)]_11_[+3(5.74e-05)]_\ 78 chrX:11137524-11137644 1.18e-01 7_[+2(5.16e-05)]_105 chr2L:13666278-13666398 5.65e-01 120 chr3R:13713668-13713788 9.51e-01 120 chrX:11081263-11081383 1.50e-01 120 chr2R:23176780-23176900 8.96e-01 120 chr2L:488308-488428 8.93e-01 120 chr2L:3852255-3852375 8.59e-01 120 chrX:2978216-2978336 6.67e-01 120 chrX:3019757-3019877 9.44e-01 120 chr3R:21187077-21187197 1.66e-01 120 chr3L:11334086-11334206 1.00e-02 19_[+4(9.25e-05)]_4_[+1(2.82e-05)]_\ 81 chr2R:20906653-20906773 3.38e-05 102_[+3(5.85e-06)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n05.farnam.hpc.yale.internal ********************************************************************************