******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG30403.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:10439030-10439150 1.0000 120 chr3R:21188154-21188274 1.0000 120 chr3R:24318553-24318673 1.0000 120 chr2R:21709638-21709758 1.0000 120 chr2R:11970299-11970419 1.0000 120 chr2R:14305240-14305360 1.0000 120 chr2L:3477362-3477482 1.0000 120 chrX:5689528-5689648 1.0000 120 chr3L:6969271-6969391 1.0000 120 chr3L:9371003-9371123 1.0000 120 chr3L:20771161-20771281 1.0000 120 chr3R:21613060-21613180 1.0000 120 chr2R:22886383-22886503 1.0000 120 chr3L:16779833-16779953 1.0000 120 chr3R:16241901-16242021 1.0000 120 chr2R:15381267-15381387 1.0000 120 chrX:19865744-19865864 1.0000 120 chr2R:20326901-20327021 1.0000 120 chrX:2011707-2011827 1.0000 120 chr3L:16060885-16061005 1.0000 120 chrX:13320793-13320913 1.0000 120 chr3L:1568762-1568882 1.0000 120 chr3R:26444285-26444405 1.0000 120 chr3L:8448693-8448813 1.0000 120 chr3R:8013506-8013626 1.0000 120 chr3L:8440887-8441007 1.0000 120 chr3L:7510853-7510973 1.0000 120 chr3R:21134057-21134177 1.0000 120 chr2L:493368-493488 1.0000 120 chr2L:15248751-15248871 1.0000 120 chr3L:13923435-13923555 1.0000 120 chr2R:23551158-23551278 1.0000 120 chr2L:6967971-6968091 1.0000 120 chr3R:5861633-5861753 1.0000 120 chr3L:7348116-7348236 1.0000 120 chr2R:10681438-10681558 1.0000 120 chr3L:630200-630320 1.0000 120 chr3R:27988781-27988901 1.0000 120 chr2R:7054358-7054478 1.0000 120 chr3R:17540127-17540247 1.0000 120 chr2R:12772766-12772886 1.0000 120 chr3R:5861423-5861543 1.0000 120 chr3L:18782190-18782310 1.0000 120 chr3L:7861169-7861289 1.0000 120 chr2R:10854319-10854439 1.0000 120 chr3L:11074601-11074721 1.0000 120 chr2L:14024874-14024994 1.0000 120 chr3R:28676975-28677095 1.0000 120 chr2L:11037886-11038006 1.0000 120 chr3L:17016107-17016227 1.0000 120 chrX:7901567-7901687 1.0000 120 chr2L:5520086-5520206 1.0000 120 chr3R:13446612-13446732 1.0000 120 chr3R:15367007-15367127 1.0000 120 chr3R:22121335-22121455 1.0000 120 chr2R:11204361-11204481 1.0000 120 chr2R:8914075-8914195 1.0000 120 chr3R:28327385-28327505 1.0000 120 chrX:12463120-12463240 1.0000 120 chrX:10362969-10363089 1.0000 120 chr2L:15254412-15254532 1.0000 120 chr2R:9684113-9684233 1.0000 120 chr3R:26117754-26117874 1.0000 120 chr3L:6752946-6753066 1.0000 120 chr3R:17680971-17681091 1.0000 120 chr3L:14328492-14328612 1.0000 120 chr2R:11275913-11276033 1.0000 120 chr2R:12468415-12468535 1.0000 120 chr2R:20327117-20327237 1.0000 120 chr3R:26801597-26801717 1.0000 120 chr3R:8349485-8349605 1.0000 120 chr3L:4254321-4254441 1.0000 120 chr2R:13008233-13008353 1.0000 120 chr3L:3437229-3437349 1.0000 120 chr3R:14875668-14875788 1.0000 120 chr3R:25661635-25661755 1.0000 120 chr3L:18786876-18786996 1.0000 120 chr3R:30305024-30305144 1.0000 120 chr3R:28599586-28599706 1.0000 120 chr2L:11331825-11331945 1.0000 120 chr3R:21140545-21140665 1.0000 120 chr2L:14376993-14377113 1.0000 120 chr2L:5278542-5278662 1.0000 120 chrX:10629008-10629128 1.0000 120 chr2L:4847300-4847420 1.0000 120 chr3R:18670600-18670720 1.0000 120 chr3L:10899331-10899451 1.0000 120 chr2R:13198396-13198516 1.0000 120 chr3R:25184234-25184354 1.0000 120 chrX:12595884-12596004 1.0000 120 chrX:16854843-16854963 1.0000 120 chr3L:11398786-11398906 1.0000 120 chrX:1370164-1370284 1.0000 120 chr2L:10856601-10856721 1.0000 120 chr3R:26052385-26052505 1.0000 120 chr2R:16800184-16800304 1.0000 120 chr3L:6264579-6264699 1.0000 120 chrX:6695096-6695216 1.0000 120 chr3L:16386053-16386173 1.0000 120 chr2L:8602794-8602914 1.0000 120 chr2L:11199173-11199293 1.0000 120 chrX:3431853-3431973 1.0000 120 chr3L:10661084-10661204 1.0000 120 chr3L:18791680-18791800 1.0000 120 chr3R:18242227-18242347 1.0000 120 chr3L:21821816-21821936 1.0000 120 chr3L:6743176-6743296 1.0000 120 chr2R:14645080-14645200 1.0000 120 chr3L:16061098-16061218 1.0000 120 chr2R:9544850-9544970 1.0000 120 chrX:7728385-7728505 1.0000 120 chr2R:23176782-23176902 1.0000 120 chr2R:5122267-5122387 1.0000 120 chr3R:26888510-26888630 1.0000 120 chr3R:12350637-12350757 1.0000 120 chrX:13757027-13757147 1.0000 120 chr3R:23212037-23212157 1.0000 120 chr3R:31793770-31793890 1.0000 120 chr3R:18393529-18393649 1.0000 120 chrX:15384087-15384207 1.0000 120 chr3L:18822509-18822629 1.0000 120 chr2L:6874647-6874767 1.0000 120 chr2R:5128305-5128425 1.0000 120 chrX:13404084-13404204 1.0000 120 chr2R:9286592-9286712 1.0000 120 chr3L:14999739-14999859 1.0000 120 chr2L:16709761-16709881 1.0000 120 chr3R:18274504-18274624 1.0000 120 chr3R:17540330-17540450 1.0000 120 chr3R:24830040-24830160 1.0000 120 chr2L:15061502-15061622 1.0000 120 chr3R:8984637-8984757 1.0000 120 chr2L:827683-827803 1.0000 120 chr2R:10103756-10103876 1.0000 120 chr2L:10522666-10522786 1.0000 120 chr3R:11674077-11674197 1.0000 120 chr3R:8867837-8867957 1.0000 120 chrX:1171135-1171255 1.0000 120 chr3R:23117987-23118107 1.0000 120 chr3R:5076325-5076445 1.0000 120 chrX:6037415-6037535 1.0000 120 chr3R:8960423-8960543 1.0000 120 chr3L:8751431-8751551 1.0000 120 chr3R:9038805-9038925 1.0000 120 chr3R:21102028-21102148 1.0000 120 chrX:7617063-7617183 1.0000 120 chr3L:10745709-10745829 1.0000 120 chr2L:19577321-19577441 1.0000 120 chr3R:5998365-5998485 1.0000 120 chr3L:12803791-12803911 1.0000 120 chr3R:29772284-29772404 1.0000 120 chr3R:18311370-18311490 1.0000 120 chrX:7001003-7001123 1.0000 120 chr3R:22625832-22625952 1.0000 120 chr3R:20588557-20588677 1.0000 120 chr3R:16222125-16222245 1.0000 120 chr3L:15563055-15563175 1.0000 120 chr2R:14411710-14411830 1.0000 120 chr3R:26654695-26654815 1.0000 120 chr2R:14909964-14910084 1.0000 120 chr3L:8692119-8692239 1.0000 120 chr3R:19831109-19831229 1.0000 120 chrX:13274574-13274694 1.0000 120 chr2L:2883248-2883368 1.0000 120 chr2L:14021224-14021344 1.0000 120 chrX:5698267-5698387 1.0000 120 chr3L:20837271-20837391 1.0000 120 chr3L:9367045-9367165 1.0000 120 chr2R:7254428-7254548 1.0000 120 chr2R:12337697-12337817 1.0000 120 chr3L:699419-699539 1.0000 120 chr3R:14729311-14729431 1.0000 120 chrX:15297294-15297414 1.0000 120 chr3R:16794402-16794522 1.0000 120 chrX:12466677-12466797 1.0000 120 chr3R:29997784-29997904 1.0000 120 chr2L:19577527-19577647 1.0000 120 chr2L:15751127-15751247 1.0000 120 chr3R:22754299-22754419 1.0000 120 chr2R:6970322-6970442 1.0000 120 chr3R:15837204-15837324 1.0000 120 chr2L:20097251-20097371 1.0000 120 chr3L:17016306-17016426 1.0000 120 chr2R:18829755-18829875 1.0000 120 chr3L:264401-264521 1.0000 120 chr3R:14898580-14898700 1.0000 120 chr2L:9503159-9503279 1.0000 120 chr2R:14362887-14363007 1.0000 120 chr2R:21507962-21508082 1.0000 120 chr3R:9370575-9370695 1.0000 120 chr3L:19561862-19561982 1.0000 120 chr3R:21101825-21101945 1.0000 120 chr3R:9791317-9791437 1.0000 120 chrX:17713566-17713686 1.0000 120 chr2L:858265-858385 1.0000 120 chr3L:9435478-9435598 1.0000 120 chr3L:8063572-8063692 1.0000 120 chr3R:6468188-6468308 1.0000 120 chr3R:29040651-29040771 1.0000 120 chr2R:12528830-12528950 1.0000 120 chr2L:20093958-20094078 1.0000 120 chr2R:7052429-7052549 1.0000 120 chr2L:73218-73338 1.0000 120 chr2R:12605753-12605873 1.0000 120 chrX:17751839-17751959 1.0000 120 chr2R:18326599-18326719 1.0000 120 chr2R:13926323-13926443 1.0000 120 chr3L:12277526-12277646 1.0000 120 chr3L:642611-642731 1.0000 120 chr3R:21111279-21111399 1.0000 120 chr3R:20989803-20989923 1.0000 120 chr3R:15320214-15320334 1.0000 120 chrX:14765970-14766090 1.0000 120 chrX:7299482-7299602 1.0000 120 chrX:7728609-7728729 1.0000 120 chr3R:26052590-26052710 1.0000 120 chr2L:21163486-21163606 1.0000 120 chrX:16782292-16782412 1.0000 120 chr3R:13818007-13818127 1.0000 120 chr3R:12433947-12434067 1.0000 120 chr2L:6693944-6694064 1.0000 120 chr2R:7278244-7278364 1.0000 120 chr3R:23356176-23356296 1.0000 120 chr2L:10987558-10987678 1.0000 120 chr3L:16165784-16165904 1.0000 120 chr3L:2372005-2372125 1.0000 120 chr3R:12718291-12718411 1.0000 120 chrX:13784624-13784744 1.0000 120 chrX:11454485-11454605 1.0000 120 chr2L:3056279-3056399 1.0000 120 chr3R:16469754-16469874 1.0000 120 chr2L:3476079-3476199 1.0000 120 chr3R:13425533-13425653 1.0000 120 chr3R:27987425-27987545 1.0000 120 chrX:12909679-12909799 1.0000 120 chr3R:22023285-22023405 1.0000 120 chr3R:5742315-5742435 1.0000 120 chr3L:20395365-20395485 1.0000 120 chr2L:7426603-7426723 1.0000 120 chr3L:8692335-8692455 1.0000 120 chr3R:21339182-21339302 1.0000 120 chr3R:8013304-8013424 1.0000 120 chr2R:12652575-12652695 1.0000 120 chr2R:10559199-10559319 1.0000 120 chr3L:5185290-5185410 1.0000 120 chr2R:12633466-12633586 1.0000 120 chr3L:14545577-14545697 1.0000 120 chrX:19663272-19663392 1.0000 120 chr3R:29738065-29738185 1.0000 120 chr3L:5881695-5881815 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG30403/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG30403.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.352 C 0.151 G 0.147 T 0.35 Background letter frequencies (from file dataset with add-one prior applied): A 0.352 C 0.151 G 0.147 T 0.35 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VKGGCGCC MEME-1 width = 8 sites = 17 llr = 173 E-value = 1.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif VKGGCGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 411:1::: pos.-specific C 411:7:99 probability G 248a2a11 matrix T :4::1::: bits 2.8 * * 2.5 * *** 2.2 * *** 1.9 ** *** Relative 1.7 ** *** Entropy 1.4 ****** (14.7 bits) 1.1 ****** 0.8 * ****** 0.6 * ****** 0.3 ******** 0.0 -------- Multilevel CGGGCGCC consensus AT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VKGGCGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17751839-17751959 89 1.62e-06 TCAAGAGTAG AGGGCGCC GCTTACTTTT chr3L:6264579-6264699 23 1.62e-06 TCAAGATTTA CTGGCGCC ATCTAGGGCC chr2R:12633466-12633586 88 1.87e-06 TCGGGTGTAA CCGGCGCC CATCGATATC chr3L:9435478-9435598 51 2.67e-06 TGGCGAGTCA GTGGCGCC TAGCCTAGCA chr2R:16800184-16800304 108 2.67e-06 TTTCGTATAG GTGGCGCC ACTTA chr3L:10899331-10899451 48 2.67e-06 CTTTGTTGTA GTGGCGCC CTCTTTTGTT chr2L:73218-73338 91 4.74e-06 GTTGTGTATA ATGGCGCC ACTGCGATTT chr3R:16794402-16794522 61 7.26e-06 GTATTTTAGC CTGGGGCC TTCAGTGGGA chr3L:5185290-5185410 14 8.54e-06 CATCATTCGA CGGGCGCG TTTGGCTCTC chr3R:12350637-12350757 7 1.03e-05 GGAATA AGCGCGCC ACCTACTGGC chr2R:23551158-23551278 79 1.23e-05 AATTTAAACA AAGGCGCC GAGGACCAGA chr3L:8063572-8063692 17 1.39e-05 TTATTGATCT CGGGTGCC ACCATTAACC chr2R:20327117-20327237 33 1.70e-05 TTTTCAACTA CGAGCGCC TCTTGAAATA chr2R:7278244-7278364 67 2.14e-05 TATGTTTTTT GGGGAGCC GTGCAGCACT chr2R:21709638-21709758 20 2.43e-05 TGCTTTTCTT CCGGCGGC ACAGTGAACG chrX:6037415-6037535 44 3.36e-05 CACACCGCAC AGCGGGCC AAGCTCTATA chr3R:16222125-16222245 21 3.91e-05 TGGGGGAGGC AAGGGGCC TTGATCAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VKGGCGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17751839-17751959 1.6e-06 88_[+1]_24 chr3L:6264579-6264699 1.6e-06 22_[+1]_90 chr2R:12633466-12633586 1.9e-06 87_[+1]_25 chr3L:9435478-9435598 2.7e-06 50_[+1]_62 chr2R:16800184-16800304 2.7e-06 107_[+1]_5 chr3L:10899331-10899451 2.7e-06 47_[+1]_65 chr2L:73218-73338 4.7e-06 90_[+1]_22 chr3R:16794402-16794522 7.3e-06 60_[+1]_52 chr3L:5185290-5185410 8.5e-06 13_[+1]_99 chr3R:12350637-12350757 1e-05 6_[+1]_106 chr2R:23551158-23551278 1.2e-05 78_[+1]_34 chr3L:8063572-8063692 1.4e-05 16_[+1]_96 chr2R:20327117-20327237 1.7e-05 32_[+1]_80 chr2R:7278244-7278364 2.1e-05 66_[+1]_46 chr2R:21709638-21709758 2.4e-05 19_[+1]_93 chrX:6037415-6037535 3.4e-05 43_[+1]_69 chr3R:16222125-16222245 3.9e-05 20_[+1]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VKGGCGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VKGGCGCC width=8 seqs=17 chrX:17751839-17751959 ( 89) AGGGCGCC 1 chr3L:6264579-6264699 ( 23) CTGGCGCC 1 chr2R:12633466-12633586 ( 88) CCGGCGCC 1 chr3L:9435478-9435598 ( 51) GTGGCGCC 1 chr2R:16800184-16800304 ( 108) GTGGCGCC 1 chr3L:10899331-10899451 ( 48) GTGGCGCC 1 chr2L:73218-73338 ( 91) ATGGCGCC 1 chr3R:16794402-16794522 ( 61) CTGGGGCC 1 chr3L:5185290-5185410 ( 14) CGGGCGCG 1 chr3R:12350637-12350757 ( 7) AGCGCGCC 1 chr2R:23551158-23551278 ( 79) AAGGCGCC 1 chr3L:8063572-8063692 ( 17) CGGGTGCC 1 chr2R:20327117-20327237 ( 33) CGAGCGCC 1 chr2R:7278244-7278364 ( 67) GGGGAGCC 1 chr2R:21709638-21709758 ( 20) CCGGCGGC 1 chrX:6037415-6037535 ( 44) AGCGGGCC 1 chr3R:16222125-16222245 ( 21) AAGGGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VKGGCGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 1.0e-001 0 145 68 -1073 -158 -36 149 1 -258 -36 249 -1073 -1073 -1073 277 -1073 -258 223 27 -257 -1073 -1073 277 -1073 -1073 264 -132 -1073 -1073 264 -132 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VKGGCGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.0e-001 0.352941 0.411765 0.235294 0.000000 0.117647 0.117647 0.411765 0.352941 0.058824 0.117647 0.823529 0.000000 0.000000 0.000000 1.000000 0.000000 0.058824 0.705882 0.176471 0.058824 0.000000 0.000000 1.000000 0.000000 0.000000 0.941176 0.058824 0.000000 0.000000 0.941176 0.058824 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VKGGCGCC MEME-1 regular expression -------------------------------------------------------------------------------- [CAG][GT]GGCGCC -------------------------------------------------------------------------------- Time 7.60 secs. ******************************************************************************** ******************************************************************************** MOTIF STGSHGGG MEME-2 width = 8 sites = 8 llr = 88 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STGSHGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::4::: pos.-specific C 5::63::: probability G 51a41aaa matrix T :9::3::: bits 2.8 * *** 2.5 * *** 2.2 * *** 1.9 * *** Relative 1.7 * ** *** Entropy 1.4 * ** *** (15.8 bits) 1.1 **** *** 0.8 **** *** 0.6 **** *** 0.3 **** *** 0.0 -------- Multilevel CTGCAGGG consensus G GC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSHGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24830040-24830160 77 1.11e-06 TGTCCTTCTA GTGCCGGG ATGCATAGCA chr2R:7278244-7278364 102 2.19e-06 AGAGATGGTA GTGGCGGG AACGTATTGG chr3L:14999739-14999859 26 5.86e-06 TGCATGTATA CTGCGGGG AATATTTCCA chr3L:18822509-18822629 106 8.44e-06 CAAGTACGTG GTGCTGGG CTATAAA chr2R:10681438-10681558 17 8.44e-06 AGTTGACAAT CTGCTGGG ATTTTTCTAA chr2L:15751127-15751247 24 1.10e-05 tactcataca gtggaggg tatactagat chr3L:10899331-10899451 105 1.10e-05 ATAATAGCCG CTGGAGGG CGCTCATG chr3L:9367045-9367165 13 1.65e-05 TCGATAGTAT CGGCAGGG TTACATTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSHGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24830040-24830160 1.1e-06 76_[+2]_36 chr2R:7278244-7278364 2.2e-06 101_[+2]_11 chr3L:14999739-14999859 5.9e-06 25_[+2]_87 chr3L:18822509-18822629 8.4e-06 105_[+2]_7 chr2R:10681438-10681558 8.4e-06 16_[+2]_96 chr2L:15751127-15751247 1.1e-05 23_[+2]_89 chr3L:10899331-10899451 1.1e-05 104_[+2]_8 chr3L:9367045-9367165 1.7e-05 12_[+2]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSHGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STGSHGGG width=8 seqs=8 chr3R:24830040-24830160 ( 77) GTGCCGGG 1 chr2R:7278244-7278364 ( 102) GTGGCGGG 1 chr3L:14999739-14999859 ( 26) CTGCGGGG 1 chr3L:18822509-18822629 ( 106) GTGCTGGG 1 chr2R:10681438-10681558 ( 17) CTGCTGGG 1 chr2L:15751127-15751247 ( 24) GTGGAGGG 1 chr3L:10899331-10899451 ( 105) CTGGAGGG 1 chr3L:9367045-9367165 ( 13) CGGCAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSHGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 5.3e+003 -965 173 177 -965 -965 -965 -23 132 -965 -965 277 -965 -965 205 135 -965 9 73 -23 -49 -965 -965 277 -965 -965 -965 277 -965 -965 -965 277 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSHGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.3e+003 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.375000 0.250000 0.125000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STGSHGGG MEME-2 regular expression -------------------------------------------------------------------------------- [CG]TG[CG][ACT]GGG -------------------------------------------------------------------------------- Time 13.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCWGCAC MEME-3 width = 8 sites = 6 llr = 72 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCWGCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::7::7: pos.-specific C 2:a::a3a probability G 8a::a::: matrix T :::3:::: bits 2.8 ** ** * 2.5 ** ** * 2.2 *** ** * 1.9 *** ** * Relative 1.7 *** ** * Entropy 1.4 *** ** * (17.4 bits) 1.1 *** **** 0.8 *** **** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGCAGCAC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12337697-12337817 110 5.81e-07 CGAGCAGTCT GGCAGCCC AAG chr2L:21163486-21163606 110 1.94e-06 CTAACGCATT GGCAGCAC TGC chr2R:8914075-8914195 23 1.94e-06 ATCTCGATGT GGCAGCAC GCTCGGTGTT chr2L:20097251-20097371 111 2.51e-06 ACTATCTAAA GGCTGCCC AT chr2R:13008233-13008353 19 3.86e-06 CGCCAGTGTC GGCTGCAC TGTAAACAAT chr3R:18393529-18393649 41 5.85e-06 ATAAACAAGT CGCAGCAC TGAGGGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12337697-12337817 5.8e-07 109_[+3]_3 chr2L:21163486-21163606 1.9e-06 109_[+3]_3 chr2R:8914075-8914195 1.9e-06 22_[+3]_90 chr2L:20097251-20097371 2.5e-06 110_[+3]_2 chr2R:13008233-13008353 3.9e-06 18_[+3]_94 chr3R:18393529-18393649 5.9e-06 40_[+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCWGCAC width=8 seqs=6 chr2R:12337697-12337817 ( 110) GGCAGCCC 1 chr2L:21163486-21163606 ( 110) GGCAGCAC 1 chr2R:8914075-8914195 ( 23) GGCAGCAC 1 chr2L:20097251-20097371 ( 111) GGCTGCCC 1 chr2R:13008233-13008353 ( 19) GGCTGCAC 1 chr3R:18393529-18393649 ( 41) CGCAGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8596 E= 1.6e+003 -923 14 250 -923 -923 -923 277 -923 -923 273 -923 -923 92 -923 -923 -7 -923 -923 277 -923 -923 273 -923 -923 92 114 -923 -923 -923 273 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.6e+003 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGCAC MEME-3 regular expression -------------------------------------------------------------------------------- GGC[AT]GC[AC]C -------------------------------------------------------------------------------- Time 20.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTGGCGG MEME-4 width = 8 sites = 3 llr = 40 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTGGCGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:::a:: probability G a::aa:aa matrix T :7a::::: bits 2.8 * ***** 2.5 * ***** 2.2 * ***** 1.9 * ***** Relative 1.7 * ***** Entropy 1.4 * ****** (19.1 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTTGGCGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGGCGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23117987-23118107 51 5.48e-07 ATTTGACTTG GCTGGCGG TAGCTTGAAA chrX:6037415-6037535 91 1.82e-06 AAACATCGAT GTTGGCGG ACTCAATGTT chr3L:7348116-7348236 79 1.82e-06 TTTAATAGAA GTTGGCGG AAAATAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGGCGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23117987-23118107 5.5e-07 50_[+4]_62 chrX:6037415-6037535 1.8e-06 90_[+4]_22 chr3L:7348116-7348236 1.8e-06 78_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGGCGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTGGCGG width=8 seqs=3 chr3R:23117987-23118107 ( 51) GCTGGCGG 1 chrX:6037415-6037535 ( 91) GTTGGCGG 1 chr3L:7348116-7348236 ( 79) GTTGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGGCGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 5.3e+003 -823 -823 277 -823 -823 114 -823 93 -823 -823 -823 151 -823 -823 277 -823 -823 -823 277 -823 -823 273 -823 -823 -823 -823 277 -823 -823 -823 277 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGGCGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGGCGG MEME-4 regular expression -------------------------------------------------------------------------------- G[TC]TGGCGG -------------------------------------------------------------------------------- Time 26.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGTCGC MEME-5 width = 8 sites = 2 llr = 29 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGTCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a::a:a probability G :a:a::a: matrix T ::::a::: bits 2.8 **** *** 2.5 **** *** 2.2 **** *** 1.9 **** *** Relative 1.7 **** *** Entropy 1.4 ******** (20.7 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGCGTCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16782292-16782412 74 5.78e-07 AATTTGTTGG CGCGTCGC GTGTTGTGCT chr3L:15563055-15563175 20 5.78e-07 TATCCACAGT CGCGTCGC ATAGTAATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16782292-16782412 5.8e-07 73_[+5]_39 chr3L:15563055-15563175 5.8e-07 19_[+5]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGTCGC width=8 seqs=2 chrX:16782292-16782412 ( 74) CGCGTCGC 1 chr3L:15563055-15563175 ( 20) CGCGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.6e+003 -765 272 -765 -765 -765 -765 276 -765 -765 272 -765 -765 -765 -765 276 -765 -765 -765 -765 151 -765 272 -765 -765 -765 -765 276 -765 -765 272 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.6e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGTCGC MEME-5 regular expression -------------------------------------------------------------------------------- CGCGTCGC -------------------------------------------------------------------------------- Time 32.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10439030-10439150 4.62e-01 120 chr3R:21188154-21188274 2.50e-01 120 chr3R:24318553-24318673 4.90e-01 120 chr2R:21709638-21709758 7.92e-06 21_[+3(1.14e-05)]_91 chr2R:11970299-11970419 1.38e-01 120 chr2R:14305240-14305360 6.45e-01 120 chr2L:3477362-3477482 9.51e-01 120 chrX:5689528-5689648 1.00e+00 120 chr3L:6969271-6969391 8.19e-01 120 chr3L:9371003-9371123 2.24e-02 120 chr3L:20771161-20771281 8.80e-01 120 chr3R:21613060-21613180 9.24e-01 120 chr2R:22886383-22886503 7.44e-01 120 chr3L:16779833-16779953 9.40e-01 120 chr3R:16241901-16242021 9.02e-01 120 chr2R:15381267-15381387 1.13e-01 120 chrX:19865744-19865864 5.79e-01 120 chr2R:20326901-20327021 1.00e+00 120 chrX:2011707-2011827 8.08e-01 120 chr3L:16060885-16061005 1.00e+00 120 chrX:13320793-13320913 9.31e-01 120 chr3L:1568762-1568882 2.27e-01 120 chr3R:26444285-26444405 1.00e+00 120 chr3L:8448693-8448813 5.07e-01 120 chr3R:8013506-8013626 5.58e-01 120 chr3L:8440887-8441007 6.73e-01 120 chr3L:7510853-7510973 7.97e-01 120 chr3R:21134057-21134177 1.00e+00 120 chr2L:493368-493488 3.64e-01 120 chr2L:15248751-15248871 4.27e-01 120 chr3L:13923435-13923555 1.85e-01 120 chr2R:23551158-23551278 7.70e-03 78_[+1(1.23e-05)]_34 chr2L:6967971-6968091 1.07e-03 44_[+2(3.53e-05)]_68 chr3R:5861633-5861753 4.60e-01 120 chr3L:7348116-7348236 7.08e-03 78_[+4(1.82e-06)]_34 chr2R:10681438-10681558 5.69e-02 16_[+2(8.44e-06)]_96 chr3L:630200-630320 1.35e-01 120 chr3R:27988781-27988901 5.36e-01 120 chr2R:7054358-7054478 9.82e-01 120 chr3R:17540127-17540247 6.71e-01 120 chr2R:12772766-12772886 7.06e-01 120 chr3R:5861423-5861543 5.31e-01 120 chr3L:18782190-18782310 9.94e-01 120 chr3L:7861169-7861289 1.00e+00 120 chr2R:10854319-10854439 9.64e-01 120 chr3L:11074601-11074721 9.90e-01 120 chr2L:14024874-14024994 1.00e+00 120 chr3R:28676975-28677095 7.80e-02 120 chr2L:11037886-11038006 1.00e+00 120 chr3L:17016107-17016227 6.85e-01 120 chrX:7901567-7901687 9.83e-01 120 chr2L:5520086-5520206 4.78e-01 120 chr3R:13446612-13446732 5.50e-01 120 chr3R:15367007-15367127 1.00e+00 120 chr3R:22121335-22121455 5.62e-01 120 chr2R:11204361-11204481 5.32e-01 120 chr2R:8914075-8914195 1.01e-04 22_[+3(1.94e-06)]_90 chr3R:28327385-28327505 1.36e-01 120 chrX:12463120-12463240 9.01e-02 120 chrX:10362969-10363089 8.16e-01 120 chr2L:15254412-15254532 8.15e-01 120 chr2R:9684113-9684233 1.00e+00 120 chr3R:26117754-26117874 5.36e-01 120 chr3L:6752946-6753066 9.93e-01 120 chr3R:17680971-17681091 9.97e-01 120 chr3L:14328492-14328612 4.93e-01 120 chr2R:11275913-11276033 5.31e-01 120 chr2R:12468415-12468535 9.99e-01 120 chr2R:20327117-20327237 3.54e-02 32_[+1(1.70e-05)]_80 chr3R:26801597-26801717 9.99e-01 120 chr3R:8349485-8349605 2.73e-01 120 chr3L:4254321-4254441 1.10e-01 120 chr2R:13008233-13008353 1.20e-04 18_[+3(3.86e-06)]_94 chr3L:3437229-3437349 1.00e+00 120 chr3R:14875668-14875788 6.12e-01 120 chr3R:25661635-25661755 8.24e-01 120 chr3L:18786876-18786996 9.74e-01 120 chr3R:30305024-30305144 9.43e-01 120 chr3R:28599586-28599706 9.97e-01 120 chr2L:11331825-11331945 9.81e-01 120 chr3R:21140545-21140665 6.78e-01 120 chr2L:14376993-14377113 9.54e-01 120 chr2L:5278542-5278662 1.79e-02 120 chrX:10629008-10629128 9.44e-01 120 chr2L:4847300-4847420 3.24e-02 120 chr3R:18670600-18670720 9.99e-01 120 chr3L:10899331-10899451 7.46e-07 47_[+1(2.67e-06)]_49_[+2(1.10e-05)]_\ 8 chr2R:13198396-13198516 9.30e-01 120 chr3R:25184234-25184354 1.00e+00 120 chrX:12595884-12596004 9.71e-01 120 chrX:16854843-16854963 4.06e-01 120 chr3L:11398786-11398906 8.48e-01 120 chrX:1370164-1370284 6.71e-01 120 chr2L:10856601-10856721 6.00e-04 15_[+4(7.00e-05)]_97 chr3R:26052385-26052505 8.49e-01 120 chr2R:16800184-16800304 4.77e-05 32_[+1(3.91e-05)]_67_[+1(2.67e-06)]_\ 5 chr3L:6264579-6264699 3.46e-04 22_[+1(1.62e-06)]_2_[+1(9.54e-05)]_\ 80 chrX:6695096-6695216 2.02e-02 120 chr3L:16386053-16386173 9.79e-01 120 chr2L:8602794-8602914 1.73e-02 120 chr2L:11199173-11199293 2.79e-01 120 chrX:3431853-3431973 1.00e+00 120 chr3L:10661084-10661204 4.12e-01 120 chr3L:18791680-18791800 5.12e-01 120 chr3R:18242227-18242347 1.00e+00 120 chr3L:21821816-21821936 7.56e-01 120 chr3L:6743176-6743296 9.85e-03 120 chr2R:14645080-14645200 4.12e-02 120 chr3L:16061098-16061218 8.88e-01 120 chr2R:9544850-9544970 6.72e-01 120 chrX:7728385-7728505 6.68e-02 120 chr2R:23176782-23176902 1.07e-02 120 chr2R:5122267-5122387 5.20e-02 120 chr3R:26888510-26888630 3.22e-01 120 chr3R:12350637-12350757 2.62e-05 6_[+1(1.03e-05)]_106 chrX:13757027-13757147 3.12e-03 99_[+3(3.91e-05)]_13 chr3R:23212037-23212157 8.16e-01 120 chr3R:31793770-31793890 4.81e-01 120 chr3R:18393529-18393649 2.32e-03 40_[+3(5.85e-06)]_72 chrX:15384087-15384207 2.08e-01 120 chr3L:18822509-18822629 1.19e-03 105_[+2(8.44e-06)]_7 chr2L:6874647-6874767 9.78e-01 120 chr2R:5128305-5128425 8.03e-01 120 chrX:13404084-13404204 4.95e-02 120 chr2R:9286592-9286712 4.08e-01 120 chr3L:14999739-14999859 2.26e-02 25_[+2(5.86e-06)]_87 chr2L:16709761-16709881 7.23e-01 120 chr3R:18274504-18274624 9.06e-01 120 chr3R:17540330-17540450 1.72e-02 120 chr3R:24830040-24830160 1.06e-04 76_[+2(1.11e-06)]_36 chr2L:15061502-15061622 7.35e-01 120 chr3R:8984637-8984757 4.25e-01 120 chr2L:827683-827803 1.36e-02 120 chr2R:10103756-10103876 9.81e-01 120 chr2L:10522666-10522786 6.31e-01 120 chr3R:11674077-11674197 1.00e+00 120 chr3R:8867837-8867957 9.58e-01 120 chrX:1171135-1171255 4.20e-01 120 chr3R:23117987-23118107 2.45e-05 50_[+4(5.48e-07)]_62 chr3R:5076325-5076445 9.40e-01 120 chrX:6037415-6037535 1.07e-05 43_[+1(3.36e-05)]_39_[+4(1.82e-06)]_\ 22 chr3R:8960423-8960543 6.19e-01 120 chr3L:8751431-8751551 3.80e-01 120 chr3R:9038805-9038925 2.80e-01 120 chr3R:21102028-21102148 1.55e-01 120 chrX:7617063-7617183 2.94e-01 120 chr3L:10745709-10745829 1.00e+00 120 chr2L:19577321-19577441 1.25e-03 11_[+5(6.75e-05)]_101 chr3R:5998365-5998485 2.17e-01 120 chr3L:12803791-12803911 9.41e-01 120 chr3R:29772284-29772404 2.20e-02 120 chr3R:18311370-18311490 1.00e+00 120 chrX:7001003-7001123 2.76e-01 120 chr3R:22625832-22625952 9.60e-01 120 chr3R:20588557-20588677 9.95e-01 120 chr3R:16222125-16222245 1.94e-03 20_[+1(3.91e-05)]_92 chr3L:15563055-15563175 2.65e-04 19_[+5(5.78e-07)]_93 chr2R:14411710-14411830 1.41e-01 120 chr3R:26654695-26654815 8.34e-01 120 chr2R:14909964-14910084 9.99e-01 120 chr3L:8692119-8692239 7.62e-01 120 chr3R:19831109-19831229 9.92e-01 120 chrX:13274574-13274694 9.43e-01 120 chr2L:2883248-2883368 9.17e-01 120 chr2L:14021224-14021344 1.00e+00 120 chrX:5698267-5698387 5.68e-01 120 chr3L:20837271-20837391 5.92e-01 120 chr3L:9367045-9367165 5.69e-02 12_[+2(1.65e-05)]_100 chr2R:7254428-7254548 1.06e-01 120 chr2R:12337697-12337817 3.96e-04 58_[+3(7.77e-05)]_43_[+3(5.81e-07)]_\ 3 chr3L:699419-699539 8.42e-01 120 chr3R:14729311-14729431 1.56e-01 120 chrX:15297294-15297414 1.00e+00 120 chr3R:16794402-16794522 2.78e-02 60_[+1(7.26e-06)]_52 chrX:12466677-12466797 9.18e-01 120 chr3R:29997784-29997904 1.66e-01 120 chr2L:19577527-19577647 9.71e-01 120 chr2L:15751127-15751247 1.32e-03 23_[+2(1.10e-05)]_89 chr3R:22754299-22754419 1.00e+00 120 chr2R:6970322-6970442 9.77e-02 120 chr3R:15837204-15837324 1.00e+00 120 chr2L:20097251-20097371 9.74e-05 110_[+3(2.51e-06)]_2 chr3L:17016306-17016426 7.17e-01 120 chr2R:18829755-18829875 5.17e-02 120 chr3L:264401-264521 3.28e-01 120 chr3R:14898580-14898700 8.66e-01 120 chr2L:9503159-9503279 5.89e-01 120 chr2R:14362887-14363007 3.37e-01 120 chr2R:21507962-21508082 6.72e-01 120 chr3R:9370575-9370695 5.34e-02 120 chr3L:19561862-19561982 9.99e-01 120 chr3R:21101825-21101945 9.87e-01 120 chr3R:9791317-9791437 1.00e+00 120 chrX:17713566-17713686 1.00e+00 120 chr2L:858265-858385 9.85e-01 120 chr3L:9435478-9435598 1.09e-05 50_[+1(2.67e-06)]_62 chr3L:8063572-8063692 1.31e-02 16_[+1(1.39e-05)]_96 chr3R:6468188-6468308 1.00e+00 120 chr3R:29040651-29040771 9.81e-01 120 chr2R:12528830-12528950 7.50e-01 120 chr2L:20093958-20094078 9.87e-01 120 chr2R:7052429-7052549 9.08e-01 120 chr2L:73218-73338 6.61e-04 24_[+1(4.74e-06)]_58_[+1(4.74e-06)]_\ 22 chr2R:12605753-12605873 5.02e-01 120 chrX:17751839-17751959 6.13e-06 88_[+1(1.62e-06)]_24 chr2R:18326599-18326719 8.64e-01 120 chr2R:13926323-13926443 9.49e-01 120 chr3L:12277526-12277646 2.36e-02 120 chr3L:642611-642731 1.00e+00 120 chr3R:21111279-21111399 6.55e-01 120 chr3R:20989803-20989923 2.09e-01 120 chr3R:15320214-15320334 2.98e-01 120 chrX:14765970-14766090 9.98e-01 120 chrX:7299482-7299602 1.70e-01 120 chrX:7728609-7728729 8.93e-01 120 chr3R:26052590-26052710 9.96e-01 120 chr2L:21163486-21163606 6.55e-03 109_[+3(1.94e-06)]_3 chrX:16782292-16782412 2.11e-06 73_[+5(5.78e-07)]_39 chr3R:13818007-13818127 8.75e-01 120 chr3R:12433947-12434067 7.13e-01 120 chr2L:6693944-6694064 9.09e-01 120 chr2R:7278244-7278364 7.09e-08 66_[+1(2.14e-05)]_1_[+3(2.25e-05)]_\ 18_[+2(2.19e-06)]_11 chr3R:23356176-23356296 9.15e-01 120 chr2L:10987558-10987678 9.99e-01 120 chr3L:16165784-16165904 5.33e-01 120 chr3L:2372005-2372125 9.85e-01 120 chr3R:12718291-12718411 2.17e-01 120 chrX:13784624-13784744 9.53e-01 120 chrX:11454485-11454605 2.07e-02 120 chr2L:3056279-3056399 2.87e-01 120 chr3R:16469754-16469874 9.73e-01 120 chr2L:3476079-3476199 8.43e-01 120 chr3R:13425533-13425653 8.52e-01 120 chr3R:27987425-27987545 1.00e+00 120 chrX:12909679-12909799 9.54e-01 120 chr3R:22023285-22023405 5.25e-01 120 chr3R:5742315-5742435 5.73e-01 120 chr3L:20395365-20395485 9.94e-02 120 chr2L:7426603-7426723 1.14e-01 120 chr3L:8692335-8692455 8.63e-01 120 chr3R:21339182-21339302 9.71e-01 120 chr3R:8013304-8013424 2.99e-01 120 chr2R:12652575-12652695 9.60e-01 120 chr2R:10559199-10559319 7.39e-01 120 chr3L:5185290-5185410 6.14e-03 13_[+1(8.54e-06)]_99 chr2R:12633466-12633586 1.55e-04 87_[+1(1.87e-06)]_25 chr3L:14545577-14545697 3.55e-01 120 chrX:19663272-19663392 6.86e-01 120 chr3R:29738065-29738185 7.32e-01 120 chr3L:5881695-5881815 9.98e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************