******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3032.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:24822657-24822777 1.0000 120 chr2R:21847831-21847951 1.0000 120 chr3L:10757108-10757228 1.0000 120 chr2R:17499276-17499396 1.0000 120 chr3R:29460321-29460441 1.0000 120 chr3R:29279717-29279837 1.0000 120 chr3R:29506736-29506856 1.0000 120 chr3L:11373985-11374105 1.0000 120 chr2R:18746917-18747037 1.0000 120 chr3L:8822353-8822473 1.0000 120 chr3R:18157445-18157565 1.0000 120 chr3L:16174891-16175011 1.0000 120 chr2R:8995138-8995258 1.0000 120 chr3L:14350919-14351039 1.0000 120 chr3L:12915569-12915689 1.0000 120 chr2L:15909429-15909549 1.0000 120 chr2R:22596514-22596634 1.0000 120 chrX:379635-379755 1.0000 120 chr3R:10829908-10830028 1.0000 120 chr3R:13875622-13875742 1.0000 120 chr3L:12096837-12096957 1.0000 120 chr3R:26542869-26542989 1.0000 120 chr3L:17843531-17843651 1.0000 120 chr3R:27199485-27199605 1.0000 120 chr2L:13146395-13146515 1.0000 120 chrX:5696192-5696312 1.0000 120 chr2R:15063780-15063900 1.0000 120 chr3L:20785472-20785592 1.0000 120 chr3R:24953297-24953417 1.0000 120 chr2R:9065296-9065416 1.0000 120 chr3R:21940374-21940494 1.0000 120 chr2R:15825528-15825648 1.0000 120 chr3R:21649604-21649724 1.0000 120 chrX:18100992-18101112 1.0000 120 chr3R:29570364-29570484 1.0000 120 chr2L:3351987-3352107 1.0000 120 chr2L:17421568-17421688 1.0000 120 chr3L:3338170-3338290 1.0000 120 chr3L:16268475-16268595 1.0000 120 chr3L:2835878-2835998 1.0000 120 chr3R:18469602-18469722 1.0000 120 chr2L:5479272-5479392 1.0000 120 chr2L:16590857-16590977 1.0000 120 chr3L:12099775-12099895 1.0000 120 chr2L:13268317-13268437 1.0000 120 chr2R:18215414-18215534 1.0000 120 chr3R:14918373-14918493 1.0000 120 chr3L:10923081-10923201 1.0000 120 chr2R:11749592-11749712 1.0000 120 chr3R:23787450-23787570 1.0000 120 chr3R:24970800-24970920 1.0000 120 chr3L:20592726-20592846 1.0000 120 chr2R:11755350-11755470 1.0000 120 chr2R:15047003-15047123 1.0000 120 chr2L:21006717-21006837 1.0000 120 chr3R:30259696-30259816 1.0000 120 chr3L:13173064-13173184 1.0000 120 chr3R:29291017-29291137 1.0000 120 chr3R:14730219-14730339 1.0000 120 chr3L:13109467-13109587 1.0000 120 chrX:17537383-17537503 1.0000 120 chr3L:20582506-20582626 1.0000 120 chr3R:13916718-13916838 1.0000 120 chr3L:10942686-10942806 1.0000 120 chr3L:12013842-12013962 1.0000 120 chr2R:9071842-9071962 1.0000 120 chr2R:9498821-9498941 1.0000 120 chrX:6028019-6028139 1.0000 120 chr3R:30265015-30265135 1.0000 120 chr2R:14929613-14929733 1.0000 120 chr3L:16362230-16362350 1.0000 120 chr2R:15238133-15238253 1.0000 120 chr3L:21044017-21044137 1.0000 120 chr3L:2830114-2830234 1.0000 120 chrX:13948270-13948390 1.0000 120 chr2L:11052544-11052664 1.0000 120 chr3R:7336581-7336701 1.0000 120 chr3L:16259648-16259768 1.0000 120 chr2L:13893606-13893726 1.0000 120 chr2R:19987230-19987350 1.0000 120 chr3L:19055190-19055310 1.0000 120 chrX:6003950-6004070 1.0000 120 chr2L:19156560-19156680 1.0000 120 chr3L:4383218-4383338 1.0000 120 chr2L:5478435-5478555 1.0000 120 chr3R:8958449-8958569 1.0000 120 chr3L:3442189-3442309 1.0000 120 chr3R:5052995-5053115 1.0000 120 chr2R:18343059-18343179 1.0000 120 chr2R:21883185-21883305 1.0000 120 chr2L:11068577-11068697 1.0000 120 chr3L:13107398-13107518 1.0000 120 chr2R:21225014-21225134 1.0000 120 chr2L:5372687-5372807 1.0000 120 chr2L:15908002-15908122 1.0000 120 chr3L:15240865-15240985 1.0000 120 chr3R:13215206-13215326 1.0000 120 chrX:7540931-7541051 1.0000 120 chr3R:27222097-27222217 1.0000 120 chr3L:20988041-20988161 1.0000 120 chr3R:14373947-14374067 1.0000 120 chr2L:2432968-2433088 1.0000 120 chr3L:16211988-16212108 1.0000 120 chr2L:16537265-16537385 1.0000 120 chr2R:19149875-19149995 1.0000 120 chr3L:18243323-18243443 1.0000 120 chr3L:766454-766574 1.0000 120 chr2L:15385546-15385666 1.0000 120 chrX:7222276-7222396 1.0000 120 chr3R:10533280-10533400 1.0000 120 chr3L:15013449-15013569 1.0000 120 chr2L:646651-646771 1.0000 120 chr3L:15180912-15181032 1.0000 120 chr2R:11544127-11544247 1.0000 120 chr3R:22184201-22184321 1.0000 120 chr3L:13178367-13178487 1.0000 120 chr3L:15264751-15264871 1.0000 120 chr3R:30843217-30843337 1.0000 120 chr3L:10562370-10562490 1.0000 120 chrX:19485183-19485303 1.0000 120 chr3L:21720971-21721091 1.0000 120 chr3L:20914579-20914699 1.0000 120 chr3R:9966246-9966366 1.0000 120 chrX:9656473-9656593 1.0000 120 chr2R:8318257-8318377 1.0000 120 chr3L:20632473-20632593 1.0000 120 chr2L:5288411-5288531 1.0000 120 chr3R:16210937-16211057 1.0000 120 chr2L:11069645-11069765 1.0000 120 chr3R:8811040-8811160 1.0000 120 chr2L:15390571-15390691 1.0000 120 chrX:18256631-18256751 1.0000 120 chr2L:18523127-18523247 1.0000 120 chr2R:16836473-16836593 1.0000 120 chr3R:10177105-10177225 1.0000 120 chr2L:4211386-4211506 1.0000 120 chr2L:5751582-5751702 1.0000 120 chr3R:18157644-18157764 1.0000 120 chr2L:15386863-15386983 1.0000 120 chr2R:14076242-14076362 1.0000 120 chrX:18273305-18273425 1.0000 120 chr3R:9594065-9594185 1.0000 120 chr3L:1064502-1064622 1.0000 120 chr2L:7899288-7899408 1.0000 120 chr3L:6458843-6458963 1.0000 120 chr2R:21799408-21799528 1.0000 120 chrX:5020168-5020288 1.0000 120 chr2L:8855616-8855736 1.0000 120 chr2L:3562518-3562638 1.0000 120 chr3L:485016-485136 1.0000 120 chr2L:20956923-20957043 1.0000 120 chr3R:18998508-18998628 1.0000 120 chrX:21127401-21127521 1.0000 120 chr3R:29847255-29847375 1.0000 120 chr3L:21253043-21253163 1.0000 120 chr3L:3339015-3339135 1.0000 120 chr2L:9981987-9982107 1.0000 120 chr2L:7702591-7702711 1.0000 120 chr3L:10928862-10928982 1.0000 120 chr3R:7651175-7651295 1.0000 120 chr2L:8919813-8919933 1.0000 120 chrX:9468413-9468533 1.0000 120 chrX:17807100-17807220 1.0000 120 chr3R:29091694-29091814 1.0000 120 chr3L:5128366-5128486 1.0000 120 chr3R:10455048-10455168 1.0000 120 chr2R:11033725-11033845 1.0000 120 chr3R:7646315-7646435 1.0000 120 chrX:4442612-4442732 1.0000 120 chr3L:14463956-14464076 1.0000 120 chr2L:5290018-5290138 1.0000 120 chr3L:3444396-3444516 1.0000 120 chr3L:14611437-14611557 1.0000 120 chr2L:20916943-20917063 1.0000 120 chr3L:5851664-5851784 1.0000 120 chrX:10105811-10105931 1.0000 120 chr2R:13461290-13461410 1.0000 120 chr2R:18926589-18926709 1.0000 120 chr3L:18079665-18079785 1.0000 120 chr2R:21851705-21851825 1.0000 120 chr2L:20381466-20381586 1.0000 120 chr2R:15000532-15000652 1.0000 120 chrX:8215637-8215757 1.0000 120 chr3R:15556624-15556744 1.0000 120 chr3R:15650452-15650572 1.0000 120 chr3R:28847994-28848114 1.0000 120 chr3L:5851864-5851984 1.0000 120 chr3R:14673076-14673196 1.0000 120 chrX:18929529-18929649 1.0000 120 chr3L:20952205-20952325 1.0000 120 chr3L:7262653-7262773 1.0000 120 chrX:8212214-8212334 1.0000 120 chr2L:7541461-7541581 1.0000 120 chr3L:10913339-10913459 1.0000 120 chr2R:18304611-18304731 1.0000 120 chr3L:15220458-15220578 1.0000 120 chr3L:6364362-6364482 1.0000 120 chr3R:22140200-22140320 1.0000 120 chr3R:23147730-23147850 1.0000 120 chr3R:21935320-21935440 1.0000 120 chr2L:16594076-16594196 1.0000 120 chr3R:6954653-6954773 1.0000 120 chr2L:3582831-3582951 1.0000 120 chr3L:15174267-15174387 1.0000 120 chrX:5312016-5312136 1.0000 120 chr2L:11386546-11386666 1.0000 120 chr2L:19454497-19454617 1.0000 120 chr2R:12013427-12013547 1.0000 120 chr2L:608281-608401 1.0000 120 chr3L:10365030-10365150 1.0000 120 chr3L:2879866-2879986 1.0000 120 chr3L:15762921-15763041 1.0000 120 chr3R:6102407-6102527 1.0000 120 chr3R:21899261-21899381 1.0000 120 chr3R:24143891-24144011 1.0000 120 chr2L:12823705-12823825 1.0000 120 chr3L:22909963-22910083 1.0000 120 chr3R:14598089-14598209 1.0000 120 chr2L:7323113-7323233 1.0000 120 chrX:5301003-5301123 1.0000 120 chr3L:2386579-2386699 1.0000 120 chrX:7534998-7535118 1.0000 120 chr3L:16489919-16490039 1.0000 120 chr3R:30270712-30270832 1.0000 120 chrX:12760847-12760967 1.0000 120 chrX:17558855-17558975 1.0000 120 chr3L:13212979-13213099 1.0000 120 chr3L:14610625-14610745 1.0000 120 chr2L:16591497-16591617 1.0000 120 chr3L:18078724-18078844 1.0000 120 chr2R:10656068-10656188 1.0000 120 chr2L:21005596-21005716 1.0000 120 chr3L:10697057-10697177 1.0000 120 chr2L:12602331-12602451 1.0000 120 chr2R:18566080-18566200 1.0000 120 chr3L:12030641-12030761 1.0000 120 chr2R:14081678-14081798 1.0000 120 chr3R:7171834-7171954 1.0000 120 chr3L:21685892-21686012 1.0000 120 chr3L:16286384-16286504 1.0000 120 chr2L:18003149-18003269 1.0000 120 chr3L:6085324-6085444 1.0000 120 chr3L:746492-746612 1.0000 120 chr3R:22194850-22194970 1.0000 120 chr3R:31330010-31330130 1.0000 120 chr3L:13994458-13994578 1.0000 120 chr3L:9742457-9742577 1.0000 120 chr2L:18122268-18122388 1.0000 120 chr3R:29300184-29300304 1.0000 120 chr3R:15631060-15631180 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG3032/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3032.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.359 C 0.139 G 0.139 T 0.363 Background letter frequencies (from file dataset with add-one prior applied): A 0.359 C 0.139 G 0.139 T 0.363 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SYGCWCAG MEME-1 width = 8 sites = 12 llr = 129 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYGCWCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::7:9: pos.-specific C 45:a:a12 probability G 6:a::::8 matrix T :5::3::: bits 2.8 ** * 2.6 ** * 2.3 ** * * 2.0 * ** * * Relative 1.7 * ** * * Entropy 1.4 * ** * * (15.5 bits) 1.1 **** *** 0.9 **** *** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCGCACAG consensus CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCWCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5301003-5301123 61 9.30e-07 AACAGAGGCT GCGCACAG TGTTGCGAAA chr3R:21649604-21649724 32 9.30e-07 CAAACTGTAA GCGCACAG AAAAAAAATA chr3L:8822353-8822473 76 1.86e-06 TCCAAAATTC CCGCACAG TTTAAGAAAC chr2R:11544127-11544247 7 5.23e-06 AGAGGT GTGCACAG AAAACAAATG chr2R:15047003-15047123 92 5.23e-06 AACTAACGAC GTGCACAG ATTTAACATC chr3L:1064502-1064622 9 8.59e-06 ATCATACA CTGCACAG TATAATAAAT chr3L:20785472-20785592 81 8.95e-06 CCAAGCGTAT GCGCACCG CCACAAGCGG chr3R:23147730-23147850 61 1.23e-05 TACTATTTTT GTGCTCAG CAGCCTTCGT chr3L:12013842-12013962 2 1.23e-05 T GCGCACAC TTTGAAAAAT chr3L:19055190-19055310 44 1.61e-05 CTCTTAAAAA CTGCTCAG CTAAGATAAG chr2L:3351987-3352107 44 1.61e-05 CAGGCTAAAA CTGCTCAG CCAAAAGTAT chr3R:5052995-5053115 41 2.30e-05 AGAAGTCTTA CCGCTCAC ATTGGATTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCWCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5301003-5301123 9.3e-07 60_[+1]_52 chr3R:21649604-21649724 9.3e-07 31_[+1]_81 chr3L:8822353-8822473 1.9e-06 75_[+1]_37 chr2R:11544127-11544247 5.2e-06 6_[+1]_106 chr2R:15047003-15047123 5.2e-06 91_[+1]_21 chr3L:1064502-1064622 8.6e-06 8_[+1]_104 chr3L:20785472-20785592 9e-06 80_[+1]_32 chr3R:23147730-23147850 1.2e-05 60_[+1]_52 chr3L:12013842-12013962 1.2e-05 1_[+1]_111 chr3L:19055190-19055310 1.6e-05 43_[+1]_69 chr2L:3351987-3352107 1.6e-05 43_[+1]_69 chr3R:5052995-5053115 2.3e-05 40_[+1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCWCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYGCWCAG width=8 seqs=12 chrX:5301003-5301123 ( 61) GCGCACAG 1 chr3R:21649604-21649724 ( 32) GCGCACAG 1 chr3L:8822353-8822473 ( 76) CCGCACAG 1 chr2R:11544127-11544247 ( 7) GTGCACAG 1 chr2R:15047003-15047123 ( 92) GTGCACAG 1 chr3L:1064502-1064622 ( 9) CTGCACAG 1 chr3L:20785472-20785592 ( 81) GCGCACCG 1 chr3R:23147730-23147850 ( 61) GTGCTCAG 1 chr3L:12013842-12013962 ( 2) GCGCACAC 1 chr3L:19055190-19055310 ( 44) CTGCTCAG 1 chr2L:3351987-3352107 ( 44) CTGCTCAG 1 chr3R:5052995-5053115 ( 41) CCGCTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCWCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 1.2e+002 -1023 159 207 -1023 -1023 185 -1023 46 -1023 -1023 284 -1023 -1023 285 -1023 -1023 89 -1023 -1023 -12 -1023 285 -1023 -1023 135 -73 -1023 -1023 -1023 26 258 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCWCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.2e+002 0.000000 0.416667 0.583333 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCWCAG MEME-1 regular expression -------------------------------------------------------------------------------- [GC][CT]GC[AT]CAG -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GGSCRGGC MEME-2 width = 8 sites = 8 llr = 91 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSCRGGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3::6::3 pos.-specific C ::58:::8 probability G a8514aa: matrix T :::1:::: bits 2.8 * ** 2.6 * ** 2.3 * ** 2.0 * ** Relative 1.7 **** *** Entropy 1.4 **** *** (16.4 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGCCAGGC consensus AG G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCRGGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10656068-10656188 7 2.79e-07 GTGCGA GGGCGGGC AAGGATCTTC chr2L:3351987-3352107 31 9.99e-07 TGAAATTCTA GGGCAGGC TAAAACTGCT chr3R:26542869-26542989 101 2.72e-06 TTGGTTTGCC GACCGGGC TTTTAACAAT chr3R:29506736-29506856 58 3.44e-06 CTACATTTAT GGGGAGGC ATATAAAATC chr3L:5851664-5851784 42 7.15e-06 ATGGAATGTT GACCAGGC CAAGCTGAGC chr2L:21006717-21006837 49 7.15e-06 CTAGATTTTT GGGCAGGA AAAAAGATAG chr3L:2835878-2835998 96 7.15e-06 AAGCAGAAAA GGCCAGGA ACATTTGGTG chrX:19485183-19485303 5 7.88e-06 TGAA GGCTGGGC TATTGCTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCRGGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10656068-10656188 2.8e-07 6_[+2]_106 chr2L:3351987-3352107 1e-06 30_[+2]_82 chr3R:26542869-26542989 2.7e-06 100_[+2]_12 chr3R:29506736-29506856 3.4e-06 57_[+2]_55 chr3L:5851664-5851784 7.2e-06 41_[+2]_71 chr2L:21006717-21006837 7.2e-06 48_[+2]_64 chr3L:2835878-2835998 7.2e-06 95_[+2]_17 chrX:19485183-19485303 7.9e-06 4_[+2]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCRGGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSCRGGC width=8 seqs=8 chr2R:10656068-10656188 ( 7) GGGCGGGC 1 chr2L:3351987-3352107 ( 31) GGGCAGGC 1 chr3R:26542869-26542989 ( 101) GACCGGGC 1 chr3R:29506736-29506856 ( 58) GGGGAGGC 1 chr3L:5851664-5851784 ( 42) GACCAGGC 1 chr2L:21006717-21006837 ( 49) GGGCAGGA 1 chr3L:2835878-2835998 ( 96) GGCCAGGA 1 chrX:19485183-19485303 ( 5) GGCTGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCRGGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 2.2e+003 -965 -965 284 -965 -52 -965 243 -965 -965 185 184 -965 -965 243 -16 -153 80 -965 143 -965 -965 -965 284 -965 -965 -965 284 -965 -52 243 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCRGGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+003 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.750000 0.125000 0.125000 0.625000 0.000000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCRGGC MEME-2 regular expression -------------------------------------------------------------------------------- G[GA][CG]C[AG]GG[CA] -------------------------------------------------------------------------------- Time 13.69 secs. ******************************************************************************** ******************************************************************************** MOTIF STCGGCGC MEME-3 width = 8 sites = 3 llr = 42 E-value = 3.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STCGGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 7:a::a:a probability G 33:aa:a: matrix T :7:::::: bits 2.8 ****** 2.6 ****** 2.3 ****** 2.0 * ****** Relative 1.7 * ****** Entropy 1.4 * ****** (20.0 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CTCGGCGC consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5851664-5851784 7 1.39e-07 GACAGA CGCGGCGC AAGATGCAAA chrX:19485183-19485303 18 5.03e-07 TGGGCTATTG CTCGGCGC TTTTGTTTTG chrX:18256631-18256751 110 1.01e-06 ACATTCAGCA GTCGGCGC GTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5851664-5851784 1.4e-07 6_[+3]_106 chrX:19485183-19485303 5e-07 17_[+3]_95 chrX:18256631-18256751 1e-06 109_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STCGGCGC width=8 seqs=3 chr3L:5851664-5851784 ( 7) CGCGGCGC 1 chrX:19485183-19485303 ( 18) CTCGGCGC 1 chrX:18256631-18256751 ( 110) GTCGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 3.4e+003 -823 226 126 -823 -823 -823 126 87 -823 285 -823 -823 -823 -823 284 -823 -823 -823 284 -823 -823 285 -823 -823 -823 -823 284 -823 -823 285 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+003 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCGGCGC MEME-3 regular expression -------------------------------------------------------------------------------- [CG][TG]CGGCGC -------------------------------------------------------------------------------- Time 19.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CCSCAGCC MEME-4 width = 8 sites = 2 llr = 28 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSCAGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C aa5a::aa probability G ::5::a:: matrix T :::::::: bits 2.8 ** * *** 2.6 ** * *** 2.3 ** * *** 2.0 ** * *** Relative 1.7 **** *** Entropy 1.4 ******** (20.4 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCCAGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCAGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:766454-766574 60 7.20e-07 CTAACCCCCA CCCCAGCC ACTTGTAAAT chrX:5696192-5696312 77 7.20e-07 CTAGTGGTTA CCGCAGCC AGGTAATCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCAGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:766454-766574 7.2e-07 59_[+4]_53 chrX:5696192-5696312 7.2e-07 76_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCAGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSCAGCC width=8 seqs=2 chr3L:766454-766574 ( 60) CCCCAGCC 1 chrX:5696192-5696312 ( 77) CCGCAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCAGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.6e+003 -765 284 -765 -765 -765 284 -765 -765 -765 184 184 -765 -765 284 -765 -765 147 -765 -765 -765 -765 -765 284 -765 -765 284 -765 -765 -765 284 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCAGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.6e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCAGCC MEME-4 regular expression -------------------------------------------------------------------------------- CC[CG]CAGCC -------------------------------------------------------------------------------- Time 25.99 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGCCGGA MEME-5 width = 8 sites = 2 llr = 28 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGCCGGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::a pos.-specific C :::aa::: probability G :aa::aa: matrix T :::::::: bits 2.8 ****** 2.6 ****** 2.3 ****** 2.0 ****** Relative 1.7 ****** Entropy 1.4 ******** (20.0 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGGCCGGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCCGGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18078724-18078844 23 9.30e-07 CGACAGCATT AGGCCGGA TAAGGAATTC chr2L:15908002-15908122 103 9.30e-07 AATATCTTCC AGGCCGGA TTTTCCTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCCGGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18078724-18078844 9.3e-07 22_[+5]_90 chr2L:15908002-15908122 9.3e-07 102_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCCGGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGCCGGA width=8 seqs=2 chr3L:18078724-18078844 ( 23) AGGCCGGA 1 chr2L:15908002-15908122 ( 103) AGGCCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCCGGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.0e+004 147 -765 -765 -765 -765 -765 284 -765 -765 -765 284 -765 -765 284 -765 -765 -765 284 -765 -765 -765 -765 284 -765 -765 -765 284 -765 147 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCCGGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCCGGA MEME-5 regular expression -------------------------------------------------------------------------------- AGGCCGGA -------------------------------------------------------------------------------- Time 32.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24822657-24822777 9.62e-01 120 chr2R:21847831-21847951 1.71e-02 120 chr3L:10757108-10757228 2.70e-01 120 chr2R:17499276-17499396 6.40e-01 120 chr3R:29460321-29460441 9.11e-01 120 chr3R:29279717-29279837 6.31e-01 120 chr3R:29506736-29506856 1.61e-02 57_[+2(3.44e-06)]_55 chr3L:11373985-11374105 1.00e+00 120 chr2R:18746917-18747037 6.15e-02 120 chr3L:8822353-8822473 2.55e-03 75_[+1(1.86e-06)]_37 chr3R:18157445-18157565 3.29e-02 34_[+3(4.20e-05)]_78 chr3L:16174891-16175011 9.70e-01 120 chr2R:8995138-8995258 5.36e-01 120 chr3L:14350919-14351039 2.89e-01 120 chr3L:12915569-12915689 1.00e+00 120 chr2L:15909429-15909549 8.47e-01 120 chr2R:22596514-22596634 8.93e-01 120 chrX:379635-379755 7.88e-01 120 chr3R:10829908-10830028 5.21e-01 120 chr3R:13875622-13875742 9.89e-01 120 chr3L:12096837-12096957 4.19e-01 120 chr3R:26542869-26542989 2.81e-05 79_[+3(2.85e-05)]_13_[+2(2.72e-06)]_\ 12 chr3L:17843531-17843651 9.80e-02 120 chr3R:27199485-27199605 8.84e-01 120 chr2L:13146395-13146515 1.00e+00 120 chrX:5696192-5696312 1.95e-04 76_[+4(7.20e-07)]_36 chr2R:15063780-15063900 6.28e-01 120 chr3L:20785472-20785592 9.22e-04 80_[+1(8.95e-06)]_32 chr3R:24953297-24953417 1.24e-01 120 chr2R:9065296-9065416 8.50e-02 120 chr3R:21940374-21940494 9.41e-01 120 chr2R:15825528-15825648 9.05e-01 120 chr3R:21649604-21649724 8.40e-03 31_[+1(9.30e-07)]_81 chrX:18100992-18101112 9.41e-03 30_[+4(3.06e-05)]_82 chr3R:29570364-29570484 9.80e-01 120 chr2L:3351987-3352107 1.83e-06 30_[+2(9.99e-07)]_5_[+1(1.61e-05)]_\ 69 chr2L:17421568-17421688 6.17e-01 120 chr3L:3338170-3338290 9.70e-01 120 chr3L:16268475-16268595 5.35e-01 120 chr3L:2835878-2835998 2.97e-05 95_[+2(7.15e-06)]_17 chr3R:18469602-18469722 2.61e-01 120 chr2L:5479272-5479392 6.13e-01 120 chr2L:16590857-16590977 9.30e-01 120 chr3L:12099775-12099895 8.05e-01 120 chr2L:13268317-13268437 7.37e-01 120 chr2R:18215414-18215534 9.91e-01 120 chr3R:14918373-14918493 9.62e-01 120 chr3L:10923081-10923201 1.00e+00 120 chr2R:11749592-11749712 5.87e-01 120 chr3R:23787450-23787570 6.96e-01 120 chr3R:24970800-24970920 2.05e-01 120 chr3L:20592726-20592846 2.81e-01 120 chr2R:11755350-11755470 1.52e-01 120 chr2R:15047003-15047123 5.42e-03 91_[+1(5.23e-06)]_21 chr2L:21006717-21006837 8.00e-03 48_[+2(7.15e-06)]_64 chr3R:30259696-30259816 7.13e-01 120 chr3L:13173064-13173184 9.98e-01 120 chr3R:29291017-29291137 6.64e-01 120 chr3R:14730219-14730339 9.90e-01 120 chr3L:13109467-13109587 3.61e-01 120 chrX:17537383-17537503 9.99e-01 120 chr3L:20582506-20582626 3.48e-02 120 chr3R:13916718-13916838 3.21e-01 120 chr3L:10942686-10942806 1.00e+00 120 chr3L:12013842-12013962 6.05e-03 1_[+1(1.23e-05)]_111 chr2R:9071842-9071962 5.25e-01 120 chr2R:9498821-9498941 9.40e-01 120 chrX:6028019-6028139 6.41e-01 120 chr3R:30265015-30265135 9.06e-02 120 chr2R:14929613-14929733 4.08e-01 120 chr3L:16362230-16362350 9.70e-01 120 chr2R:15238133-15238253 4.43e-01 120 chr3L:21044017-21044137 5.56e-01 120 chr3L:2830114-2830234 9.88e-01 120 chrX:13948270-13948390 8.57e-02 57_[+1(4.97e-05)]_55 chr2L:11052544-11052664 2.53e-01 120 chr3R:7336581-7336701 9.88e-01 120 chr3L:16259648-16259768 8.87e-01 120 chr2L:13893606-13893726 9.99e-01 120 chr2R:19987230-19987350 9.99e-01 120 chr3L:19055190-19055310 2.03e-02 43_[+1(1.61e-05)]_69 chrX:6003950-6004070 4.40e-01 120 chr2L:19156560-19156680 3.48e-01 120 chr3L:4383218-4383338 9.18e-01 120 chr2L:5478435-5478555 9.09e-01 120 chr3R:8958449-8958569 1.29e-01 120 chr3L:3442189-3442309 8.63e-01 120 chr3R:5052995-5053115 5.77e-02 40_[+1(2.30e-05)]_72 chr2R:18343059-18343179 9.98e-01 120 chr2R:21883185-21883305 7.46e-01 120 chr2L:11068577-11068697 8.86e-01 120 chr3L:13107398-13107518 8.78e-01 120 chr2R:21225014-21225134 5.38e-01 120 chr2L:5372687-5372807 5.29e-01 120 chr2L:15908002-15908122 4.70e-05 102_[+5(9.30e-07)]_10 chr3L:15240865-15240985 4.37e-01 120 chr3R:13215206-13215326 1.93e-02 120 chrX:7540931-7541051 9.28e-01 120 chr3R:27222097-27222217 3.22e-01 120 chr3L:20988041-20988161 4.95e-01 120 chr3R:14373947-14374067 7.52e-01 120 chr2L:2432968-2433088 6.40e-01 120 chr3L:16211988-16212108 9.96e-01 120 chr2L:16537265-16537385 9.98e-01 120 chr2R:19149875-19149995 6.05e-01 120 chr3L:18243323-18243443 4.48e-01 120 chr3L:766454-766574 4.32e-03 59_[+4(7.20e-07)]_53 chr2L:15385546-15385666 5.85e-01 120 chrX:7222276-7222396 3.54e-01 120 chr3R:10533280-10533400 2.72e-01 120 chr3L:15013449-15013569 5.82e-01 120 chr2L:646651-646771 9.95e-01 120 chr3L:15180912-15181032 9.02e-01 120 chr2R:11544127-11544247 3.90e-02 6_[+1(5.23e-06)]_106 chr3R:22184201-22184321 6.90e-01 120 chr3L:13178367-13178487 8.44e-01 120 chr3L:15264751-15264871 1.00e+00 120 chr3R:30843217-30843337 8.85e-01 120 chr3L:10562370-10562490 9.97e-01 120 chrX:19485183-19485303 1.60e-06 4_[+2(7.88e-06)]_5_[+3(5.03e-07)]_\ 95 chr3L:21720971-21721091 1.18e-01 [+1(8.69e-05)]_112 chr3L:20914579-20914699 9.26e-01 120 chr3R:9966246-9966366 9.68e-01 120 chrX:9656473-9656593 1.57e-01 65_[+4(8.17e-05)]_47 chr2R:8318257-8318377 3.65e-01 120 chr3L:20632473-20632593 9.81e-01 120 chr2L:5288411-5288531 3.77e-02 120 chr3R:16210937-16211057 4.94e-01 120 chr2L:11069645-11069765 9.96e-01 120 chr3R:8811040-8811160 8.85e-01 120 chr2L:15390571-15390691 9.36e-01 120 chrX:18256631-18256751 2.61e-05 109_[+3(1.01e-06)]_3 chr2L:18523127-18523247 8.24e-02 120 chr2R:16836473-16836593 8.54e-01 120 chr3R:10177105-10177225 1.00e+00 120 chr2L:4211386-4211506 1.00e+00 120 chr2L:5751582-5751702 3.18e-01 120 chr3R:18157644-18157764 7.34e-01 120 chr2L:15386863-15386983 7.60e-01 120 chr2R:14076242-14076362 5.54e-01 120 chrX:18273305-18273425 2.74e-01 120 chr3R:9594065-9594185 6.66e-01 120 chr3L:1064502-1064622 3.68e-02 8_[+1(8.59e-06)]_104 chr2L:7899288-7899408 6.20e-01 120 chr3L:6458843-6458963 8.72e-01 120 chr2R:21799408-21799528 3.51e-02 120 chrX:5020168-5020288 5.24e-01 120 chr2L:8855616-8855736 5.82e-01 120 chr2L:3562518-3562638 5.38e-02 120 chr3L:485016-485136 1.21e-01 120 chr2L:20956923-20957043 4.82e-01 120 chr3R:18998508-18998628 8.14e-02 120 chrX:21127401-21127521 6.88e-01 120 chr3R:29847255-29847375 1.80e-01 120 chr3L:21253043-21253163 7.19e-01 120 chr3L:3339015-3339135 9.64e-01 120 chr2L:9981987-9982107 9.99e-01 120 chr2L:7702591-7702711 2.59e-02 120 chr3L:10928862-10928982 9.99e-01 120 chr3R:7651175-7651295 8.66e-01 120 chr2L:8919813-8919933 2.59e-01 120 chrX:9468413-9468533 7.44e-01 120 chrX:17807100-17807220 7.15e-01 120 chr3R:29091694-29091814 1.09e-01 120 chr3L:5128366-5128486 1.24e-01 108_[+4(8.17e-05)]_4 chr3R:10455048-10455168 8.94e-01 120 chr2R:11033725-11033845 4.36e-01 120 chr3R:7646315-7646435 9.15e-01 120 chrX:4442612-4442732 2.67e-02 120 chr3L:14463956-14464076 9.96e-01 120 chr2L:5290018-5290138 5.89e-01 120 chr3L:3444396-3444516 7.17e-01 120 chr3L:14611437-14611557 9.92e-01 120 chr2L:20916943-20917063 6.63e-01 120 chr3L:5851664-5851784 4.16e-06 6_[+3(1.39e-07)]_27_[+2(7.15e-06)]_\ 71 chrX:10105811-10105931 9.69e-01 120 chr2R:13461290-13461410 2.12e-01 120 chr2R:18926589-18926709 8.91e-01 120 chr3L:18079665-18079785 5.21e-01 120 chr2R:21851705-21851825 9.90e-01 120 chr2L:20381466-20381586 8.29e-02 120 chr2R:15000532-15000652 1.01e-01 120 chrX:8215637-8215757 8.09e-01 120 chr3R:15556624-15556744 5.94e-01 120 chr3R:15650452-15650572 9.46e-01 120 chr3R:28847994-28848114 1.00e+00 120 chr3L:5851864-5851984 1.47e-02 120 chr3R:14673076-14673196 1.03e-01 120 chrX:18929529-18929649 3.90e-01 120 chr3L:20952205-20952325 6.43e-01 120 chr3L:7262653-7262773 9.81e-01 120 chrX:8212214-8212334 8.74e-01 120 chr2L:7541461-7541581 1.00e+00 120 chr3L:10913339-10913459 7.68e-01 120 chr2R:18304611-18304731 9.91e-01 120 chr3L:15220458-15220578 9.47e-01 120 chr3L:6364362-6364482 8.80e-01 120 chr3R:22140200-22140320 1.88e-02 15_[+4(8.17e-05)]_97 chr3R:23147730-23147850 6.84e-04 60_[+1(1.23e-05)]_52 chr3R:21935320-21935440 9.83e-01 120 chr2L:16594076-16594196 9.81e-01 120 chr3R:6954653-6954773 6.70e-01 120 chr2L:3582831-3582951 3.54e-01 120 chr3L:15174267-15174387 5.01e-01 120 chrX:5312016-5312136 3.14e-01 120 chr2L:11386546-11386666 2.11e-01 120 chr2L:19454497-19454617 9.64e-01 120 chr2R:12013427-12013547 7.33e-01 120 chr2L:608281-608401 2.67e-01 120 chr3L:10365030-10365150 8.45e-02 120 chr3L:2879866-2879986 5.42e-01 120 chr3L:15762921-15763041 9.24e-01 120 chr3R:6102407-6102527 5.07e-01 120 chr3R:21899261-21899381 9.67e-01 120 chr3R:24143891-24144011 5.29e-02 120 chr2L:12823705-12823825 9.97e-01 120 chr3L:22909963-22910083 4.85e-01 120 chr3R:14598089-14598209 9.29e-01 120 chr2L:7323113-7323233 9.79e-01 120 chrX:5301003-5301123 1.26e-05 60_[+1(9.30e-07)]_52 chr3L:2386579-2386699 9.53e-01 120 chrX:7534998-7535118 3.60e-01 120 chr3L:16489919-16490039 9.81e-01 120 chr3R:30270712-30270832 2.01e-02 120 chrX:12760847-12760967 9.48e-01 120 chrX:17558855-17558975 9.80e-03 120 chr3L:13212979-13213099 2.08e-01 120 chr3L:14610625-14610745 6.40e-01 120 chr2L:16591497-16591617 3.71e-02 120 chr3L:18078724-18078844 1.27e-03 22_[+5(9.30e-07)]_90 chr2R:10656068-10656188 2.61e-04 6_[+2(2.79e-07)]_106 chr2L:21005596-21005716 9.88e-01 120 chr3L:10697057-10697177 9.66e-01 120 chr2L:12602331-12602451 9.98e-01 120 chr2R:18566080-18566200 1.00e+00 120 chr3L:12030641-12030761 8.98e-01 120 chr2R:14081678-14081798 1.19e-01 120 chr3R:7171834-7171954 4.55e-02 120 chr3L:21685892-21686012 8.54e-01 120 chr3L:16286384-16286504 5.82e-01 120 chr2L:18003149-18003269 8.96e-01 120 chr3L:6085324-6085444 6.04e-01 120 chr3L:746492-746612 6.15e-01 120 chr3R:22194850-22194970 9.97e-01 120 chr3R:31330010-31330130 9.72e-01 120 chr3L:13994458-13994578 1.68e-01 120 chr3L:9742457-9742577 6.02e-01 120 chr2L:18122268-18122388 7.77e-01 120 chr3R:29300184-29300304 4.45e-02 111_[+4(3.06e-05)]_1 chr3R:15631060-15631180 1.30e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************