******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG30020.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:23346851-23346971 1.0000 120 chr3L:23343552-23343672 1.0000 120 chr2R:5503341-5503461 1.0000 120 chr2R:4924323-4924443 1.0000 120 chr2L:22364637-22364757 1.0000 120 chr2R:1211257-1211377 1.0000 120 chrX:15799074-15799194 1.0000 120 chr3L:25429437-25429557 1.0000 120 chrX:19151960-19152080 1.0000 120 chrX:15799310-15799430 1.0000 120 chr2R:3501534-3501654 1.0000 120 chr3L:23670845-23670965 1.0000 120 chr3L:24028651-24028771 1.0000 120 chr3L:23081428-23081548 1.0000 120 chr3L:26377207-26377327 1.0000 120 chr2R:1338860-1338980 1.0000 120 chr4:179990-180110 1.0000 120 chr3R:3103804-3103924 1.0000 120 chr2R:5259263-5259383 1.0000 120 chr3L:25196280-25196400 1.0000 120 chr2L:22570210-22570330 1.0000 120 chr2L:16703449-16703569 1.0000 120 chr4:1253794-1253914 1.0000 120 chr3L:23568618-23568738 1.0000 120 chr2R:3003094-3003214 1.0000 120 chr2R:4123226-4123346 1.0000 120 chrX:3449145-3449265 1.0000 120 chr2R:3003443-3003563 1.0000 120 chr2R:4124382-4124502 1.0000 120 chr4:949457-949577 1.0000 120 chr2R:2947636-2947756 1.0000 120 chr3R:3974659-3974779 1.0000 120 chr2R:5259469-5259589 1.0000 120 chr2R:4426811-4426931 1.0000 120 chr2R:5141257-5141377 1.0000 120 chr4:1552-1672 1.0000 120 chr2L:22756899-22757019 1.0000 120 chr2R:3500371-3500491 1.0000 120 chr2L:16703250-16703370 1.0000 120 chr3L:24253021-24253141 1.0000 120 chr4:879652-879772 1.0000 120 chr3L:26223013-26223133 1.0000 120 chr3L:23671222-23671342 1.0000 120 chr2R:5398909-5399029 1.0000 120 chr4:469006-469126 1.0000 120 chr3L:24020886-24021006 1.0000 120 chr2R:2945001-2945121 1.0000 120 chr2L:22575515-22575635 1.0000 120 chr2R:5068161-5068281 1.0000 120 chr2R:4225051-4225171 1.0000 120 chr2L:22798415-22798535 1.0000 120 chr2L:23173065-23173185 1.0000 120 chr3L:24927045-24927165 1.0000 120 chr2R:4268985-4269105 1.0000 120 chr3L:24029880-24030000 1.0000 120 chr2R:5113854-5113974 1.0000 120 chr2R:4124708-4124828 1.0000 120 chr3L:28013799-28013919 1.0000 120 chr4:192716-192836 1.0000 120 chr4:936175-936295 1.0000 120 chr4:855191-855311 1.0000 120 chr4:1234883-1235003 1.0000 120 chr3L:24773212-24773332 1.0000 120 chr2R:5360037-5360157 1.0000 120 chr3L:23726400-23726520 1.0000 120 chr3L:23726604-23726724 1.0000 120 chr2R:2953562-2953682 1.0000 120 chr4:261785-261905 1.0000 120 chr3R:2198584-2198704 1.0000 120 chr2R:4221331-4221451 1.0000 120 chr3R:566567-566687 1.0000 120 chr2R:2109321-2109441 1.0000 120 chr2L:22567545-22567665 1.0000 120 chr2R:2262392-2262512 1.0000 120 chr2L:22558426-22558546 1.0000 120 chr2R:1211512-1211632 1.0000 120 chr4:1146952-1147072 1.0000 120 chr3L:27129422-27129542 1.0000 120 chr2L:11001199-11001319 1.0000 120 chr4:1156402-1156522 1.0000 120 chr3L:23249144-23249264 1.0000 120 chr4:1032759-1032879 1.0000 120 chr2R:2856779-2856899 1.0000 120 chr2L:22743730-22743850 1.0000 120 chr3L:23589403-23589523 1.0000 120 chr2L:22758294-22758414 1.0000 120 chr2R:5981090-5981210 1.0000 120 chr2L:22292923-22293043 1.0000 120 chr3L:23206559-23206679 1.0000 120 chr4:1232026-1232146 1.0000 120 chr3R:23982537-23982657 1.0000 120 chr3R:4858655-4858775 1.0000 120 chr2R:5078139-5078259 1.0000 120 chrX:22443708-22443828 1.0000 120 chr3L:23260081-23260201 1.0000 120 chrX:5945216-5945336 1.0000 120 chr3L:23067120-23067240 1.0000 120 chr3R:3786817-3786937 1.0000 120 chr3L:23249352-23249472 1.0000 120 chr4:1042229-1042349 1.0000 120 chr2L:22572654-22572774 1.0000 120 chr2R:5417717-5417837 1.0000 120 chr3R:1815904-1816024 1.0000 120 chr3R:2858585-2858705 1.0000 120 chr3L:26528424-26528544 1.0000 120 chr4:1255859-1255979 1.0000 120 chr2R:4701276-4701396 1.0000 120 chr2R:5667296-5667416 1.0000 120 chr3L:25675665-25675785 1.0000 120 chr3L:23686348-23686468 1.0000 120 chr3R:3587036-3587156 1.0000 120 chr2R:4547390-4547510 1.0000 120 chr3L:25107914-25108034 1.0000 120 chr2L:23068645-23068765 1.0000 120 chr4:329251-329371 1.0000 120 chr2R:4776418-4776538 1.0000 120 chr3R:3749084-3749204 1.0000 120 chr2R:3500688-3500808 1.0000 120 chr3L:27860560-27860680 1.0000 120 chr2R:2848506-2848626 1.0000 120 chr4:1260492-1260612 1.0000 120 chr3L:23555795-23555915 1.0000 120 chr4:179718-179838 1.0000 120 chrY:380280-380400 1.0000 120 chr2R:5358606-5358726 1.0000 120 chr2R:1995648-1995768 1.0000 120 chrX:16373378-16373498 1.0000 120 chrY:3245906-3246026 1.0000 120 chr4:467558-467678 1.0000 120 chr3L:25747580-25747700 1.0000 120 chr2L:23315176-23315296 1.0000 120 chr3R:2111442-2111562 1.0000 120 chr2R:4784554-4784674 1.0000 120 chr3L:23262717-23262837 1.0000 120 chr2R:4594372-4594492 1.0000 120 chrX:15983675-15983795 1.0000 120 chr2L:22567745-22567865 1.0000 120 chr2L:22297446-22297566 1.0000 120 chr2L:21558386-21558506 1.0000 120 chr2R:5013771-5013891 1.0000 120 chr2R:2846388-2846508 1.0000 120 chr2R:4783274-4783394 1.0000 120 chr2L:22574455-22574575 1.0000 120 chr4:1063411-1063531 1.0000 120 chr3L:23583596-23583716 1.0000 120 chr2R:4134373-4134493 1.0000 120 chr3R:7080656-7080776 1.0000 120 chr3L:27174693-27174813 1.0000 120 chr2R:5677069-5677189 1.0000 120 chr4:1253997-1254117 1.0000 120 chr2L:22541546-22541666 1.0000 120 chr2R:5149269-5149389 1.0000 120 chrX:8398324-8398444 1.0000 120 chr3R:3843080-3843200 1.0000 120 chr4:130713-130833 1.0000 120 chr2R:1071837-1071957 1.0000 120 chr2L:10405197-10405317 1.0000 120 chr2R:4615640-4615760 1.0000 120 chr4:1182919-1183039 1.0000 120 chr3L:24975056-24975176 1.0000 120 chr3L:27265767-27265887 1.0000 120 chr3L:27269619-27269739 1.0000 120 chr3R:566842-566962 1.0000 120 chr2L:22757102-22757222 1.0000 120 chr2L:10364622-10364742 1.0000 120 chr4:136095-136215 1.0000 120 chr4:1144854-1144974 1.0000 120 chr3R:25495498-25495618 1.0000 120 chr4:1062360-1062480 1.0000 120 chr2R:5258982-5259102 1.0000 120 chr2R:3582012-3582132 1.0000 120 chr2R:4633653-4633773 1.0000 120 chr3R:1213675-1213795 1.0000 120 chr4:467357-467477 1.0000 120 chr3L:23738322-23738442 1.0000 120 chr2L:10231631-10231751 1.0000 120 chr4:1186976-1187096 1.0000 120 chr4:961326-961446 1.0000 120 chr3L:26224145-26224265 1.0000 120 chr4:265733-265853 1.0000 120 chr2R:5075002-5075122 1.0000 120 chr2R:5303707-5303827 1.0000 120 chr2R:5399119-5399239 1.0000 120 chr3R:23982738-23982858 1.0000 120 chr3L:27262131-27262251 1.0000 120 chr2R:4162943-4163063 1.0000 120 chr3L:23554512-23554632 1.0000 120 chr4:445505-445625 1.0000 120 chr2L:22983718-22983838 1.0000 120 chr2L:22578011-22578131 1.0000 120 chr2R:2771109-2771229 1.0000 120 chr3R:3621131-3621251 1.0000 120 chrX:6527828-6527948 1.0000 120 chr4:180847-180967 1.0000 120 chr3L:24998035-24998155 1.0000 120 chr2R:5608523-5608643 1.0000 120 chr3L:27358872-27358992 1.0000 120 chr4:1233522-1233642 1.0000 120 chr3L:23250693-23250813 1.0000 120 chr2L:10251742-10251862 1.0000 120 chr2R:4517347-4517467 1.0000 120 chr3L:26371434-26371554 1.0000 120 chr2R:1441012-1441132 1.0000 120 chr3R:3118105-3118225 1.0000 120 chr3L:20767339-20767459 1.0000 120 chr2L:22538418-22538538 1.0000 120 chr2R:4172999-4173119 1.0000 120 chr2R:5980795-5980915 1.0000 120 chr4:1254205-1254325 1.0000 120 chrX:21632994-21633114 1.0000 120 chr2L:22746950-22747070 1.0000 120 chr3L:27865613-27865733 1.0000 120 chr3R:2111201-2111321 1.0000 120 chr2R:4261601-4261721 1.0000 120 chr3L:25756829-25756949 1.0000 120 chr3L:27086662-27086782 1.0000 120 chr3R:1212959-1213079 1.0000 120 chr4:1148111-1148231 1.0000 120 chr4:1198753-1198873 1.0000 120 chr2R:4419475-4419595 1.0000 120 chr4:42507-42627 1.0000 120 chr2L:10396588-10396708 1.0000 120 chr3R:25495223-25495343 1.0000 120 chr2L:21559789-21559909 1.0000 120 chr2R:1348565-1348685 1.0000 120 chr3L:24074030-24074150 1.0000 120 chr2R:5114689-5114809 1.0000 120 chr3L:23339476-23339596 1.0000 120 chr2R:4827365-4827485 1.0000 120 chr3L:27859372-27859492 1.0000 120 chr3L:25414320-25414440 1.0000 120 chr2R:4549667-4549787 1.0000 120 chr2R:2954779-2954899 1.0000 120 chr3R:864511-864631 1.0000 120 chr2R:5088608-5088728 1.0000 120 chr2L:22737129-22737249 1.0000 120 chrX:6279803-6279923 1.0000 120 chr3L:24537527-24537647 1.0000 120 chr4:1183930-1184050 1.0000 120 chr4:646578-646698 1.0000 120 chr3L:23599690-23599810 1.0000 120 chrX:18858327-18858447 1.0000 120 chr3L:24083427-24083547 1.0000 120 chr3L:23246664-23246784 1.0000 120 chr2R:1350697-1350817 1.0000 120 chr3R:2566090-2566210 1.0000 120 chr2L:10333369-10333489 1.0000 120 chr2R:4519571-4519691 1.0000 120 chr3L:25176087-25176207 1.0000 120 chr3L:23580756-23580876 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG30020/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG30020.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.333 C 0.171 G 0.176 T 0.32 Background letter frequencies (from file dataset with add-one prior applied): A 0.333 C 0.171 G 0.176 T 0.32 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 19 llr = 188 E-value = 2.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::a:8 pos.-specific C :::a:::: probability G ::::a::2 matrix T a:a:::a: bits 2.6 ** 2.3 ** 2.0 ** 1.8 ** Relative 1.5 ******* Entropy 1.3 ******* (14.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21559789-21559909 77 3.64e-05 GCAACACTAA TATCGATA GAATTCTCTG chr4:42507-42627 2 3.64e-05 c tatcgata tcccagaaaa chr4:1148111-1148231 74 3.64e-05 ttttctggga tatcgata aatattgggg chr2R:5608523-5608643 74 3.64e-05 ATCCGAAAAA TATCGATA AATGTCTTAT chr3L:24998035-24998155 22 3.64e-05 tgatgatttc tatcgata tgccgaaaac chr2L:22983718-22983838 90 3.64e-05 AAAATAGATT TATCGATA TTAGAATCCA chr4:265733-265853 77 3.64e-05 atatctggaa tatcgata ggttttgggg chr3L:26224145-26224265 58 3.64e-05 ccccaatatc tatcgata tcccagaaaa chr4:1186976-1187096 95 3.64e-05 AAATATGTTC TATCGATA TGTCAAAAAA chr2R:4633653-4633773 98 3.64e-05 TAACGATAGT TATCGATA TGCGATGATC chr3L:24975056-24975176 26 3.64e-05 ACTCGTTAGT TATCGATA TTTACAATGT chr4:130713-130833 82 3.64e-05 gttttttaaa tatcgata gaaactgcaa chr3L:27860560-27860680 25 3.64e-05 ttatacccca tatcgata tcccagaaaa chr2L:23068645-23068765 88 3.64e-05 CGCTAAATAT TATCGATA TTGAAGAAAA chr4:1552-1672 42 3.64e-05 tcccaatatc tatcgata tcccagaaaa chr2R:5259263-5259383 82 3.64e-05 ccacaatatc tatcgata tcccggaaaa chr2R:4519571-4519691 9 5.57e-05 TCGTCGTG TATCGATG TATGCATGGT chr4:1182919-1183039 96 5.57e-05 GATTGAGAAA TATCGATG ATGGCGGACA chr3R:3587036-3587156 29 5.57e-05 TAAAATTGTA TATCGATG TTAAAGACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21559789-21559909 3.6e-05 76_[+1]_36 chr4:42507-42627 3.6e-05 1_[+1]_111 chr4:1148111-1148231 3.6e-05 73_[+1]_39 chr2R:5608523-5608643 3.6e-05 73_[+1]_39 chr3L:24998035-24998155 3.6e-05 21_[+1]_91 chr2L:22983718-22983838 3.6e-05 89_[+1]_23 chr4:265733-265853 3.6e-05 76_[+1]_36 chr3L:26224145-26224265 3.6e-05 57_[+1]_55 chr4:1186976-1187096 3.6e-05 94_[+1]_18 chr2R:4633653-4633773 3.6e-05 97_[+1]_15 chr3L:24975056-24975176 3.6e-05 25_[+1]_87 chr4:130713-130833 3.6e-05 81_[+1]_31 chr3L:27860560-27860680 3.6e-05 24_[+1]_88 chr2L:23068645-23068765 3.6e-05 87_[+1]_25 chr4:1552-1672 3.6e-05 41_[+1]_71 chr2R:5259263-5259383 3.6e-05 81_[+1]_31 chr2R:4519571-4519691 5.6e-05 8_[+1]_104 chr4:1182919-1183039 5.6e-05 95_[+1]_17 chr3R:3587036-3587156 5.6e-05 28_[+1]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=19 chr2L:21559789-21559909 ( 77) TATCGATA 1 chr4:42507-42627 ( 2) TATCGATA 1 chr4:1148111-1148231 ( 74) TATCGATA 1 chr2R:5608523-5608643 ( 74) TATCGATA 1 chr3L:24998035-24998155 ( 22) TATCGATA 1 chr2L:22983718-22983838 ( 90) TATCGATA 1 chr4:265733-265853 ( 77) TATCGATA 1 chr3L:26224145-26224265 ( 58) TATCGATA 1 chr4:1186976-1187096 ( 95) TATCGATA 1 chr2R:4633653-4633773 ( 98) TATCGATA 1 chr3L:24975056-24975176 ( 26) TATCGATA 1 chr4:130713-130833 ( 82) TATCGATA 1 chr3L:27860560-27860680 ( 25) TATCGATA 1 chr2L:23068645-23068765 ( 88) TATCGATA 1 chr4:1552-1672 ( 42) TATCGATA 1 chr2R:5259263-5259383 ( 82) TATCGATA 1 chr2R:4519571-4519691 ( 9) TATCGATG 1 chr4:1182919-1183039 ( 96) TATCGATG 1 chr3R:3587036-3587156 ( 29) TATCGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.732 E= 2.6e+000 -1089 -1089 -1089 164 159 -1089 -1089 -1089 -1089 -1089 -1089 164 -1089 255 -1089 -1089 -1089 -1089 251 -1089 159 -1089 -1089 -1089 -1089 -1089 -1089 164 134 -1089 -16 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.6e+000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.842105 0.000000 0.157895 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 7.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GCATTCMC MEME-2 width = 8 sites = 11 llr = 119 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCATTCMC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::6: pos.-specific C :a:1:a4a probability G a::::::: matrix T :::9a::: bits 2.6 ** * * 2.3 ** * * 2.0 ** * * 1.8 ** * * Relative 1.5 *** ** * Entropy 1.3 ****** * (15.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCATTCAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTCMC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:23315176-23315296 63 5.13e-06 tttcacgttc gcattccc actagctgag chr2R:5358606-5358726 16 5.13e-06 TTTGTTAATG GCATTCCC TGGATACCTG chr3L:26223013-26223133 94 5.13e-06 CGTATGTACT GCATTCCC TTCCGGTTGA chr4:42507-42627 45 1.51e-05 tttcgagttc gcattcac actagctgag chr4:180847-180967 25 1.51e-05 tttctggttc gcattcac actagctagt chr3L:26224145-26224265 86 1.51e-05 atataaactc gcattcac actagctaag chr2R:4633653-4633773 14 1.51e-05 tgtcgcattc gcattcac actatttgag chr4:1063411-1063531 83 1.51e-05 gtgtaCTTGC GCATTCAC ATTAAATTTG chr3L:27860560-27860680 62 1.51e-05 ttttgctttc gcattcac accagctaag chr2R:1338860-1338980 111 1.51e-05 GTTGGTCTTT GCATTCAC TT chr2R:5608523-5608643 93 1.79e-05 ATGTCTTATT GCACTCCC ATCGGTCTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTCMC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:23315176-23315296 5.1e-06 62_[+2]_50 chr2R:5358606-5358726 5.1e-06 15_[+2]_97 chr3L:26223013-26223133 5.1e-06 93_[+2]_19 chr4:42507-42627 1.5e-05 44_[+2]_68 chr4:180847-180967 1.5e-05 24_[+2]_88 chr3L:26224145-26224265 1.5e-05 85_[+2]_27 chr2R:4633653-4633773 1.5e-05 13_[+2]_99 chr4:1063411-1063531 1.5e-05 82_[+2]_30 chr3L:27860560-27860680 1.5e-05 61_[+2]_51 chr2R:1338860-1338980 1.5e-05 110_[+2]_2 chr2R:5608523-5608643 1.8e-05 92_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTCMC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCATTCMC width=8 seqs=11 chr2L:23315176-23315296 ( 63) GCATTCCC 1 chr2R:5358606-5358726 ( 16) GCATTCCC 1 chr3L:26223013-26223133 ( 94) GCATTCCC 1 chr4:42507-42627 ( 45) GCATTCAC 1 chr4:180847-180967 ( 25) GCATTCAC 1 chr3L:26224145-26224265 ( 86) GCATTCAC 1 chr2R:4633653-4633773 ( 14) GCATTCAC 1 chr4:1063411-1063531 ( 83) GCATTCAC 1 chr3L:27860560-27860680 ( 62) GCATTCAC 1 chr2R:1338860-1338980 ( 111) GCATTCAC 1 chr2R:5608523-5608643 ( 93) GCACTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTCMC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8783 E= 2.0e+002 -1010 -1010 251 -1010 -1010 255 -1010 -1010 159 -1010 -1010 -1010 -1010 -91 -1010 150 -1010 -1010 -1010 164 -1010 255 -1010 -1010 93 109 -1010 -1010 -1010 255 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTCMC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.0e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCATTCMC MEME-2 regular expression -------------------------------------------------------------------------------- GCATTC[AC]C -------------------------------------------------------------------------------- Time 14.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGAACAM MEME-3 width = 8 sites = 18 llr = 176 E-value = 5.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGAACAM MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::aa:93 pos.-specific C :::::a:6 probability G 2aa:::11 matrix T 8::::::: bits 2.6 ** * 2.3 ** * 2.0 ** * 1.8 ** * Relative 1.5 ***** Entropy 1.3 ****** (14.1 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGAACAC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGAACAM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:4827365-4827485 97 1.07e-05 tgaggtaact tggaacac ttcgtttgaa chr2R:1441012-1441132 19 1.07e-05 ACAAAATCAA TGGAACAC AGTAGCTGTG chr2R:4783274-4783394 47 1.07e-05 CTCGTTGCTG TGGAACAC TTGGCCTCAT chr4:1255859-1255979 11 1.07e-05 GACTTGCTTG TGGAACAC GCGGAAATAT chr3R:1815904-1816024 7 1.07e-05 tacggt tggaacac ttggaaagtg chr3R:2198584-2198704 30 1.07e-05 acttggaatg tggaacac ggtgaaataa chr3L:24927045-24927165 10 1.07e-05 CGCAAGTTC TGGAACAC CCTTAAATGT chr3R:3974659-3974779 29 1.07e-05 actgggaatg tggaacac ggtgaaataa chr2L:23315176-23315296 101 1.66e-05 ctgatagttt gggaacac gGATTAACAT chr3L:25414320-25414440 49 3.74e-05 caaagaacaa tggaacaa ccacaacaac chr3L:20767339-20767459 84 3.74e-05 TACACCAAAT TGGAACAA TGATCAAAAA chr2L:10231631-10231751 112 3.74e-05 AACGCGGAAA TGGAACAA A chr2R:2953562-2953682 101 3.74e-05 CATTTAAATC TGGAACAA TGACCCATTG chr2R:4924323-4924443 40 3.74e-05 ATCAAGACTT TGGAACAA TTAGGAATGG chr2R:5417717-5417837 78 4.84e-05 CCCAACGAAA TGGAACAG AAAAACTAGT chr2L:22558426-22558546 69 4.84e-05 TGTGGGACAA TGGAACAG GAATCATATT chr3L:24074030-24074150 80 6.56e-05 TTCTCCTGGT GGGAACAA TATAAATAAT chr2L:22575515-22575635 45 7.47e-05 ttatatggtc gggaacgc ctattacaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGAACAM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:4827365-4827485 1.1e-05 96_[+3]_16 chr2R:1441012-1441132 1.1e-05 18_[+3]_94 chr2R:4783274-4783394 1.1e-05 46_[+3]_66 chr4:1255859-1255979 1.1e-05 10_[+3]_102 chr3R:1815904-1816024 1.1e-05 6_[+3]_106 chr3R:2198584-2198704 1.1e-05 29_[+3]_83 chr3L:24927045-24927165 1.1e-05 9_[+3]_103 chr3R:3974659-3974779 1.1e-05 28_[+3]_84 chr2L:23315176-23315296 1.7e-05 100_[+3]_12 chr3L:25414320-25414440 3.7e-05 48_[+3]_64 chr3L:20767339-20767459 3.7e-05 83_[+3]_29 chr2L:10231631-10231751 3.7e-05 111_[+3]_1 chr2R:2953562-2953682 3.7e-05 100_[+3]_12 chr2R:4924323-4924443 3.7e-05 39_[+3]_73 chr2R:5417717-5417837 4.8e-05 77_[+3]_35 chr2L:22558426-22558546 4.8e-05 68_[+3]_44 chr3L:24074030-24074150 6.6e-05 79_[+3]_33 chr2L:22575515-22575635 7.5e-05 44_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGAACAM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGAACAM width=8 seqs=18 chr2R:4827365-4827485 ( 97) TGGAACAC 1 chr2R:1441012-1441132 ( 19) TGGAACAC 1 chr2R:4783274-4783394 ( 47) TGGAACAC 1 chr4:1255859-1255979 ( 11) TGGAACAC 1 chr3R:1815904-1816024 ( 7) TGGAACAC 1 chr3R:2198584-2198704 ( 30) TGGAACAC 1 chr3L:24927045-24927165 ( 10) TGGAACAC 1 chr3R:3974659-3974779 ( 29) TGGAACAC 1 chr2L:23315176-23315296 ( 101) GGGAACAC 1 chr3L:25414320-25414440 ( 49) TGGAACAA 1 chr3L:20767339-20767459 ( 84) TGGAACAA 1 chr2L:10231631-10231751 ( 112) TGGAACAA 1 chr2R:2953562-2953682 ( 101) TGGAACAA 1 chr2R:4924323-4924443 ( 40) TGGAACAA 1 chr2R:5417717-5417837 ( 78) TGGAACAG 1 chr2L:22558426-22558546 ( 69) TGGAACAG 1 chr3L:24074030-24074150 ( 80) GGGAACAA 1 chr2L:22575515-22575635 ( 45) GGGAACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGAACAM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 5.0e+002 -1081 -1081 -8 138 -1081 -1081 251 -1081 -1081 -1081 251 -1081 159 -1081 -1081 -1081 159 -1081 -1081 -1081 -1081 255 -1081 -1081 150 -1081 -166 -1081 0 170 -66 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGAACAM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 5.0e+002 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.333333 0.555556 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGAACAM MEME-3 regular expression -------------------------------------------------------------------------------- TGGAACA[CA] -------------------------------------------------------------------------------- Time 20.36 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGSHGC MEME-4 width = 8 sites = 17 llr = 166 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGSHGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C :2::44:7 probability G a1aa6:a: matrix T :6:::3:3 bits 2.6 * ** * 2.3 * ** * 2.0 * ** * 1.8 * ** * Relative 1.5 * *** ** Entropy 1.3 * *** ** (14.1 bits) 1.0 * *** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGGCGC consensus C CA T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGSHGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:1211512-1211632 107 1.58e-06 ttgcaaaagt gtgggcgc ggcaga chr2R:5141257-5141377 83 1.58e-06 agttcggttt gtgggcgc tagagagggc chr2R:4594372-4594492 54 3.96e-06 actcacacaa gcgggcgc ataccattcc chr3L:27358872-27358992 9 1.17e-05 GCCATGCA GGGGGCGC TAATCTGATG chr3L:23580756-23580876 42 1.75e-05 TCGATCCGAT GTGGCAGC ATCGCTTCGA chr4:180847-180967 76 1.75e-05 acttccgcct gtggcagc tttcttatac chr2R:1071837-1071957 55 1.75e-05 TGTGGAAATT GTGGCTGC CAAAAGACTG chr4:261785-261905 99 1.75e-05 TCTAGCCAAA GTGGCAGC ACACAGCGAT chr2R:4549667-4549787 105 2.16e-05 aattttgagt gcgggtgc cactcacc chr3L:23339476-23339596 85 2.16e-05 GTGCGTTGGA GCGGGAGC TATTGGAGCC chr4:130713-130833 51 2.46e-05 tggtgtcaga gtgggcgt gggttgacat chr2L:22292923-22293043 50 2.77e-05 caatttctct gcggctgc ggtcccgctC chr2L:22541546-22541666 92 3.06e-05 ggccgttagt gtggccgt tacacatctt chr3R:2858585-2858705 77 3.06e-05 ACAAAGGCAC GTGGCCGT GTGAATGCAA chr2R:4172999-4173119 12 3.55e-05 TGCAGAATCT GGGGGAGC TGAGAACATC chr3L:23262717-23262837 39 5.15e-05 CGTTGTTGCT GTGGGTGT GGACCTATCT chrX:16373378-16373498 103 5.15e-05 TCATACATCT GTGGGTGT ATGTATGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGSHGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:1211512-1211632 1.6e-06 106_[+4]_6 chr2R:5141257-5141377 1.6e-06 82_[+4]_30 chr2R:4594372-4594492 4e-06 53_[+4]_59 chr3L:27358872-27358992 1.2e-05 8_[+4]_104 chr3L:23580756-23580876 1.8e-05 41_[+4]_71 chr4:180847-180967 1.8e-05 75_[+4]_37 chr2R:1071837-1071957 1.8e-05 54_[+4]_58 chr4:261785-261905 1.8e-05 98_[+4]_14 chr2R:4549667-4549787 2.2e-05 104_[+4]_8 chr3L:23339476-23339596 2.2e-05 84_[+4]_28 chr4:130713-130833 2.5e-05 50_[+4]_62 chr2L:22292923-22293043 2.8e-05 49_[+4]_63 chr2L:22541546-22541666 3.1e-05 91_[+4]_21 chr3R:2858585-2858705 3.1e-05 76_[+4]_36 chr2R:4172999-4173119 3.5e-05 11_[+4]_101 chr3L:23262717-23262837 5.2e-05 38_[+4]_74 chrX:16373378-16373498 5.2e-05 102_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGSHGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGSHGC width=8 seqs=17 chr2R:1211512-1211632 ( 107) GTGGGCGC 1 chr2R:5141257-5141377 ( 83) GTGGGCGC 1 chr2R:4594372-4594492 ( 54) GCGGGCGC 1 chr3L:27358872-27358992 ( 9) GGGGGCGC 1 chr3L:23580756-23580876 ( 42) GTGGCAGC 1 chr4:180847-180967 ( 76) GTGGCAGC 1 chr2R:1071837-1071957 ( 55) GTGGCTGC 1 chr4:261785-261905 ( 99) GTGGCAGC 1 chr2R:4549667-4549787 ( 105) GCGGGTGC 1 chr3L:23339476-23339596 ( 85) GCGGGAGC 1 chr4:130713-130833 ( 51) GTGGGCGT 1 chr2L:22292923-22293043 ( 50) GCGGCTGC 1 chr2L:22541546-22541666 ( 92) GTGGCCGT 1 chr3R:2858585-2858705 ( 77) GTGGCCGT 1 chr2R:4172999-4173119 ( 12) GGGGGAGC 1 chr3L:23262717-23262837 ( 39) GTGGGTGT 1 chrX:16373378-16373498 ( 103) GTGGGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGSHGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 1.8e+003 -1073 -1073 251 -1073 -1073 46 -58 101 -1073 -1073 251 -1073 -1073 -1073 251 -1073 -1073 127 174 -1073 -18 127 -1073 -12 -1073 -1073 251 -1073 -1073 205 -1073 -12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGSHGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.235294 0.117647 0.647059 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.411765 0.588235 0.000000 0.294118 0.411765 0.000000 0.294118 0.000000 0.000000 1.000000 0.000000 0.000000 0.705882 0.000000 0.294118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGSHGC MEME-4 regular expression -------------------------------------------------------------------------------- G[TC]GG[GC][CAT]G[CT] -------------------------------------------------------------------------------- Time 26.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGACTCT MEME-5 width = 8 sites = 10 llr = 107 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGACTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::2a:::: pos.-specific C :9::a:a1 probability G a18::::1 matrix T :::::a:8 bits 2.6 * * * 2.3 * * * 2.0 ** * * 1.8 ** * * Relative 1.5 ******* Entropy 1.3 ******* (15.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGACTCT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGACTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:4261601-4261721 88 5.28e-06 TTGTTAAATT GCGACTCT GGTATTAACT chr2R:2771109-2771229 18 5.28e-06 cggcagagaa gcgactct tatgtatata chr3L:23260081-23260201 10 5.28e-06 cttgcatga gcgactct ataatcaaca chr2R:4268985-4269105 42 5.28e-06 TCGTTAAATT GCGACTCT GGTATGAACT chr3L:26377207-26377327 82 5.28e-06 TCGTTAAATT GCGACTCT GGTATGTACT chr2R:2945001-2945121 8 1.10e-05 GGCTGCT GCGACTCC AGGCATGTAG chr3L:23671222-23671342 74 1.10e-05 tgtcgggtga gcgactcg gcggtcgtat chr3R:3118105-3118225 26 2.10e-05 cggacggtgt gcaactct tataagctgc chr3R:566842-566962 22 2.10e-05 GACGCAGATT GCAACTCT TGTGTAAACG chr4:1255859-1255979 89 2.64e-05 CCTGATACGT GGGACTCT TTTCCATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGACTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:4261601-4261721 5.3e-06 87_[+5]_25 chr2R:2771109-2771229 5.3e-06 17_[+5]_95 chr3L:23260081-23260201 5.3e-06 9_[+5]_103 chr2R:4268985-4269105 5.3e-06 41_[+5]_71 chr3L:26377207-26377327 5.3e-06 81_[+5]_31 chr2R:2945001-2945121 1.1e-05 7_[+5]_105 chr3L:23671222-23671342 1.1e-05 73_[+5]_39 chr3R:3118105-3118225 2.1e-05 25_[+5]_87 chr3R:566842-566962 2.1e-05 21_[+5]_91 chr4:1255859-1255979 2.6e-05 88_[+5]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGACTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGACTCT width=8 seqs=10 chr2R:4261601-4261721 ( 88) GCGACTCT 1 chr2R:2771109-2771229 ( 18) GCGACTCT 1 chr3L:23260081-23260201 ( 10) GCGACTCT 1 chr2R:4268985-4269105 ( 42) GCGACTCT 1 chr3L:26377207-26377327 ( 82) GCGACTCT 1 chr2R:2945001-2945121 ( 8) GCGACTCC 1 chr3L:23671222-23671342 ( 74) GCGACTCG 1 chr3R:3118105-3118225 ( 26) GCAACTCT 1 chr3R:566842-566962 ( 22) GCAACTCT 1 chr4:1255859-1255979 ( 89) GGGACTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGACTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 4.6e+003 -997 -997 251 -997 -997 240 -81 -997 -73 -997 218 -997 159 -997 -997 -997 -997 255 -997 -997 -997 -997 -997 164 -997 255 -997 -997 -997 -77 -81 132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGACTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.6e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.200000 0.000000 0.800000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.100000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGACTCT MEME-5 regular expression -------------------------------------------------------------------------------- GC[GA]ACTCT -------------------------------------------------------------------------------- Time 32.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:23346851-23346971 7.33e-01 120 chr3L:23343552-23343672 6.44e-02 120 chr2R:5503341-5503461 4.23e-01 120 chr2R:4924323-4924443 1.77e-01 39_[+3(3.74e-05)]_73 chr2L:22364637-22364757 1.88e-01 120 chr2R:1211257-1211377 5.17e-01 120 chrX:15799074-15799194 1.71e-01 120 chr3L:25429437-25429557 7.68e-01 120 chrX:19151960-19152080 5.09e-01 120 chrX:15799310-15799430 1.48e-01 120 chr2R:3501534-3501654 4.95e-01 120 chr3L:23670845-23670965 3.54e-01 120 chr3L:24028651-24028771 9.70e-01 120 chr3L:23081428-23081548 4.62e-01 120 chr3L:26377207-26377327 1.59e-02 81_[+5(5.28e-06)]_31 chr2R:1338860-1338980 2.49e-02 110_[+2(1.51e-05)]_2 chr4:179990-180110 2.22e-01 120 chr3R:3103804-3103924 9.64e-01 120 chr2R:5259263-5259383 9.60e-02 81_[+1(3.64e-05)]_31 chr3L:25196280-25196400 1.25e-01 120 chr2L:22570210-22570330 6.74e-01 120 chr2L:16703449-16703569 5.33e-01 120 chr4:1253794-1253914 1.83e-01 120 chr3L:23568618-23568738 1.98e-01 120 chr2R:3003094-3003214 6.21e-01 120 chr2R:4123226-4123346 6.71e-01 120 chrX:3449145-3449265 5.47e-01 120 chr2R:3003443-3003563 6.99e-01 120 chr2R:4124382-4124502 8.79e-01 120 chr4:949457-949577 7.76e-01 120 chr2R:2947636-2947756 2.45e-01 120 chr3R:3974659-3974779 3.78e-02 12_[+3(1.07e-05)]_8_[+3(1.07e-05)]_\ 84 chr2R:5259469-5259589 9.64e-01 120 chr2R:4426811-4426931 8.57e-01 120 chr2R:5141257-5141377 1.22e-03 82_[+4(1.58e-06)]_30 chr4:1552-1672 1.14e-04 41_[+1(3.64e-05)]_63_[+5(6.46e-05)] chr2L:22756899-22757019 8.84e-01 120 chr2R:3500371-3500491 4.49e-01 120 chr2L:16703250-16703370 9.88e-01 120 chr3L:24253021-24253141 4.44e-01 120 chr4:879652-879772 6.74e-01 120 chr3L:26223013-26223133 4.51e-03 93_[+2(5.13e-06)]_19 chr3L:23671222-23671342 4.66e-03 73_[+5(1.10e-05)]_39 chr2R:5398909-5399029 6.18e-01 120 chr4:469006-469126 5.07e-01 120 chr3L:24020886-24021006 3.07e-01 120 chr2R:2945001-2945121 1.24e-02 7_[+5(1.10e-05)]_105 chr2L:22575515-22575635 4.55e-02 44_[+3(7.47e-05)]_68 chr2R:5068161-5068281 3.39e-01 120 chr2R:4225051-4225171 8.60e-01 120 chr2L:22798415-22798535 2.27e-01 120 chr2L:23173065-23173185 1.66e-01 10_[+2(5.65e-05)]_102 chr3L:24927045-24927165 1.89e-02 9_[+3(1.07e-05)]_103 chr2R:4268985-4269105 2.88e-02 41_[+5(5.28e-06)]_71 chr3L:24029880-24030000 1.51e-01 120 chr2R:5113854-5113974 9.06e-01 120 chr2R:4124708-4124828 9.30e-01 120 chr3L:28013799-28013919 2.92e-01 120 chr4:192716-192836 3.84e-01 120 chr4:936175-936295 8.06e-01 120 chr4:855191-855311 2.47e-02 120 chr4:1234883-1235003 7.45e-02 120 chr3L:24773212-24773332 3.31e-01 120 chr2R:5360037-5360157 4.81e-01 120 chr3L:23726400-23726520 9.07e-01 120 chr3L:23726604-23726724 2.92e-01 120 chr2R:2953562-2953682 2.46e-02 100_[+3(3.74e-05)]_12 chr4:261785-261905 2.29e-02 98_[+4(1.75e-05)]_14 chr3R:2198584-2198704 4.24e-02 13_[+3(1.07e-05)]_8_[+3(1.07e-05)]_\ 83 chr2R:4221331-4221451 9.29e-01 120 chr3R:566567-566687 2.86e-01 120 chr2R:2109321-2109441 7.08e-01 120 chr2L:22567545-22567665 4.03e-01 120 chr2R:2262392-2262512 6.74e-01 120 chr2L:22558426-22558546 5.19e-02 68_[+3(4.84e-05)]_44 chr2R:1211512-1211632 4.90e-03 106_[+4(1.58e-06)]_6 chr4:1146952-1147072 4.24e-01 120 chr3L:27129422-27129542 5.49e-01 120 chr2L:11001199-11001319 5.98e-01 120 chr4:1156402-1156522 2.81e-01 120 chr3L:23249144-23249264 2.87e-01 120 chr4:1032759-1032879 2.61e-01 120 chr2R:2856779-2856899 6.90e-01 120 chr2L:22743730-22743850 4.22e-01 120 chr3L:23589403-23589523 5.86e-01 120 chr2L:22758294-22758414 3.57e-01 120 chr2R:5981090-5981210 5.01e-01 120 chr2L:22292923-22293043 3.56e-02 49_[+4(2.77e-05)]_63 chr3L:23206559-23206679 6.69e-02 75_[+3(9.16e-05)]_37 chr4:1232026-1232146 1.46e-01 120 chr3R:23982537-23982657 8.81e-01 120 chr3R:4858655-4858775 4.48e-01 120 chr2R:5078139-5078259 6.19e-01 120 chrX:22443708-22443828 6.98e-01 120 chr3L:23260081-23260201 3.03e-02 9_[+5(5.28e-06)]_103 chrX:5945216-5945336 7.37e-01 120 chr3L:23067120-23067240 5.42e-02 120 chr3R:3786817-3786937 7.79e-01 120 chr3L:23249352-23249472 4.02e-01 120 chr4:1042229-1042349 2.72e-01 120 chr2L:22572654-22572774 8.41e-02 120 chr2R:5417717-5417837 2.58e-01 77_[+3(4.84e-05)]_35 chr3R:1815904-1816024 3.19e-02 6_[+3(1.07e-05)]_8_[+3(1.07e-05)]_\ 90 chr3R:2858585-2858705 3.93e-03 76_[+4(3.06e-05)]_36 chr3L:26528424-26528544 2.79e-01 120 chr4:1255859-1255979 7.33e-04 10_[+3(1.07e-05)]_70_[+5(2.64e-05)]_\ 24 chr2R:4701276-4701396 1.85e-01 49_[+2(5.65e-05)]_63 chr2R:5667296-5667416 3.36e-01 120 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120 chr3L:23580756-23580876 2.87e-03 41_[+4(1.75e-05)]_71 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************