******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2875.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:19182993-19183113 1.0000 120 chr2L:19370244-19370364 1.0000 120 chr3L:4615202-4615322 1.0000 120 chr3L:16429580-16429700 1.0000 120 chrX:13645211-13645331 1.0000 120 chrX:19839260-19839380 1.0000 120 chr2R:6157991-6158111 1.0000 120 chr3R:24301598-24301718 1.0000 120 chr2R:7167945-7168065 1.0000 120 chr2R:7756393-7756513 1.0000 120 chr2R:11706361-11706481 1.0000 120 chr2L:20327526-20327646 1.0000 120 chr2R:24323418-24323538 1.0000 120 chr2L:5338766-5338886 1.0000 120 chr2R:12729332-12729452 1.0000 120 chr2R:16162558-16162678 1.0000 120 chr2R:16820454-16820574 1.0000 120 chr3R:10150704-10150824 1.0000 120 chr2L:9614131-9614251 1.0000 120 chr2R:10485630-10485750 1.0000 120 chr2R:12741224-12741344 1.0000 120 chr3R:15677862-15677982 1.0000 120 chr3R:6665428-6665548 1.0000 120 chr2R:18877760-18877880 1.0000 120 chr3R:21834392-21834512 1.0000 120 chr2L:10497547-10497667 1.0000 120 chr3L:8925812-8925932 1.0000 120 chr3L:11491922-11492042 1.0000 120 chrX:15497829-15497949 1.0000 120 chr3R:27254138-27254258 1.0000 120 chr2R:13532037-13532157 1.0000 120 chr3L:4272321-4272441 1.0000 120 chr3R:21598096-21598216 1.0000 120 chr3L:11003045-11003165 1.0000 120 chr3R:19467595-19467715 1.0000 120 chr2L:18496941-18497061 1.0000 120 chr3L:19670606-19670726 1.0000 120 chr3R:6674721-6674841 1.0000 120 chr2R:22540015-22540135 1.0000 120 chr2L:1094812-1094932 1.0000 120 chr2L:14432492-14432612 1.0000 120 chr2L:18717570-18717690 1.0000 120 chrX:12923466-12923586 1.0000 120 chrX:8413110-8413230 1.0000 120 chr3R:18785941-18786061 1.0000 120 chr3L:754674-754794 1.0000 120 chr3L:614860-614980 1.0000 120 chr2L:12509607-12509727 1.0000 120 chrX:7227491-7227611 1.0000 120 chr3R:8980246-8980366 1.0000 120 chr3R:26900111-26900231 1.0000 120 chr3R:11338444-11338564 1.0000 120 chr2R:22199998-22200118 1.0000 120 chr3L:16056354-16056474 1.0000 120 chr2L:8423973-8424093 1.0000 120 chr2L:5303767-5303887 1.0000 120 chr2R:24746086-24746206 1.0000 120 chr3L:11151096-11151216 1.0000 120 chr3L:19847085-19847205 1.0000 120 chr3L:1690836-1690956 1.0000 120 chr2R:13305617-13305737 1.0000 120 chr3L:17937429-17937549 1.0000 120 chr2L:7266092-7266212 1.0000 120 chr3R:7779770-7779890 1.0000 120 chr3L:18198259-18198379 1.0000 120 chrX:3358995-3359115 1.0000 120 chr3L:8379297-8379417 1.0000 120 chr3R:25524346-25524466 1.0000 120 chr3L:17047874-17047994 1.0000 120 chr3L:4400048-4400168 1.0000 120 chr3L:10391064-10391184 1.0000 120 chr2L:3576191-3576311 1.0000 120 chr3L:721176-721296 1.0000 120 chrX:1992119-1992239 1.0000 120 chr2R:6503174-6503294 1.0000 120 chr3R:10521278-10521398 1.0000 120 chr2R:19725883-19726003 1.0000 120 chr2L:20889993-20890113 1.0000 120 chr3L:351145-351265 1.0000 120 chr3L:14194281-14194401 1.0000 120 chr3R:21157286-21157406 1.0000 120 chr2R:16091935-16092055 1.0000 120 chr3R:8155907-8156027 1.0000 120 chrX:1387357-1387477 1.0000 120 chrX:362270-362390 1.0000 120 chrX:21334660-21334780 1.0000 120 chrX:10115661-10115781 1.0000 120 chr3R:6229061-6229181 1.0000 120 chr3L:6140296-6140416 1.0000 120 chr2R:24897678-24897798 1.0000 120 chr2L:1738161-1738281 1.0000 120 chrX:18238016-18238136 1.0000 120 chr3L:5785372-5785492 1.0000 120 chr3L:14166444-14166564 1.0000 120 chr3R:21263315-21263435 1.0000 120 chr2R:14073595-14073715 1.0000 120 chr2L:21263936-21264056 1.0000 120 chr3R:19014877-19014997 1.0000 120 chr3L:14354647-14354767 1.0000 120 chr2L:2749197-2749317 1.0000 120 chr3L:15742152-15742272 1.0000 120 chr3R:26908894-26909014 1.0000 120 chr3R:6765019-6765139 1.0000 120 chr2R:13960913-13961033 1.0000 120 chrX:8837321-8837441 1.0000 120 chr3L:18144753-18144873 1.0000 120 chr2L:7525416-7525536 1.0000 120 chr3L:17656816-17656936 1.0000 120 chr2R:22384448-22384568 1.0000 120 chrX:3967764-3967884 1.0000 120 chr2L:14245594-14245714 1.0000 120 chr3L:15199327-15199447 1.0000 120 chr3L:3873202-3873322 1.0000 120 chr2L:4794226-4794346 1.0000 120 chr3L:10741301-10741421 1.0000 120 chr3L:16640599-16640719 1.0000 120 chrX:2462127-2462247 1.0000 120 chr2R:23180956-23181076 1.0000 120 chr2R:9266558-9266678 1.0000 120 chr3L:8058385-8058505 1.0000 120 chr2L:16520042-16520162 1.0000 120 chr3R:17048961-17049081 1.0000 120 chr2R:15354569-15354689 1.0000 120 chrX:15591779-15591899 1.0000 120 chr3L:3755807-3755927 1.0000 120 chr3R:21271336-21271456 1.0000 120 chr2R:14969666-14969786 1.0000 120 chr2L:2494633-2494753 1.0000 120 chr3R:6182645-6182765 1.0000 120 chrX:4458027-4458147 1.0000 120 chr2R:14494801-14494921 1.0000 120 chr3L:19073293-19073413 1.0000 120 chr3R:23445370-23445490 1.0000 120 chr3R:14386257-14386377 1.0000 120 chr2L:470042-470162 1.0000 120 chr3R:9083469-9083589 1.0000 120 chr2R:22666780-22666900 1.0000 120 chrX:14622353-14622473 1.0000 120 chr3R:26539262-26539382 1.0000 120 chr2R:21848628-21848748 1.0000 120 chr3L:16670311-16670431 1.0000 120 chr3L:11336538-11336658 1.0000 120 chr2L:9775338-9775458 1.0000 120 chr3L:7996473-7996593 1.0000 120 chr3R:17955806-17955926 1.0000 120 chr3R:17828788-17828908 1.0000 120 chr3R:11993438-11993558 1.0000 120 chr2L:8543259-8543379 1.0000 120 chr2L:14235142-14235262 1.0000 120 chr2R:17272620-17272740 1.0000 120 chr2L:7151011-7151131 1.0000 120 chrX:11823213-11823333 1.0000 120 chr2L:12465842-12465962 1.0000 120 chr2R:13474945-13475065 1.0000 120 chr3R:29757318-29757438 1.0000 120 chr2L:6461673-6461793 1.0000 120 chr3R:16069406-16069526 1.0000 120 chr3R:25885270-25885390 1.0000 120 chr3R:5327998-5328118 1.0000 120 chr2R:14077553-14077673 1.0000 120 chr3L:12350457-12350577 1.0000 120 chr2L:3851455-3851575 1.0000 120 chrX:22837526-22837646 1.0000 120 chr3R:5323737-5323857 1.0000 120 chr2L:19884613-19884733 1.0000 120 chr3L:8347512-8347632 1.0000 120 chrX:20506055-20506175 1.0000 120 chr3L:1549376-1549496 1.0000 120 chr3L:13232950-13233070 1.0000 120 chr3L:4380316-4380436 1.0000 120 chr2R:17274110-17274230 1.0000 120 chr2L:8080837-8080957 1.0000 120 chr3L:14172637-14172757 1.0000 120 chr3L:10858591-10858711 1.0000 120 chr3R:21594518-21594638 1.0000 120 chr3L:21130948-21131068 1.0000 120 chr3R:14284533-14284653 1.0000 120 chr2R:19413340-19413460 1.0000 120 chr3L:8604427-8604547 1.0000 120 chr3R:10449111-10449231 1.0000 120 chr2R:23744775-23744895 1.0000 120 chr3R:24293304-24293424 1.0000 120 chr3L:18242262-18242382 1.0000 120 chr3L:3449794-3449914 1.0000 120 chrX:18517518-18517638 1.0000 120 chr3L:11540487-11540607 1.0000 120 chr3R:31687934-31688054 1.0000 120 chr2R:22387621-22387741 1.0000 120 chr2R:22657109-22657229 1.0000 120 chr3L:3080706-3080826 1.0000 120 chr2R:14109806-14109926 1.0000 120 chr3R:23947149-23947269 1.0000 120 chr3R:17655156-17655276 1.0000 120 chr2L:856135-856255 1.0000 120 chr3R:21865176-21865296 1.0000 120 chr2L:3587411-3587531 1.0000 120 chr3R:13549723-13549843 1.0000 120 chr3R:18438353-18438473 1.0000 120 chr3L:21007861-21007981 1.0000 120 chr3R:15983736-15983856 1.0000 120 chr3R:11617515-11617635 1.0000 120 chr2R:11792793-11792913 1.0000 120 chr3R:31309415-31309535 1.0000 120 chr3L:2468503-2468623 1.0000 120 chr3R:4975310-4975430 1.0000 120 chr2L:2864703-2864823 1.0000 120 chrX:17782111-17782231 1.0000 120 chrX:13764575-13764695 1.0000 120 chr3L:19191977-19192097 1.0000 120 chrX:17582816-17582936 1.0000 120 chr2L:19121099-19121219 1.0000 120 chr2R:14906345-14906465 1.0000 120 chr3R:21629861-21629981 1.0000 120 chrX:17473437-17473557 1.0000 120 chr2L:117896-118016 1.0000 120 chrX:10582185-10582305 1.0000 120 chr2R:14971131-14971251 1.0000 120 chr3R:16769511-16769631 1.0000 120 chr3R:5746774-5746894 1.0000 120 chr3R:21349528-21349648 1.0000 120 chr3R:27138132-27138252 1.0000 120 chr3R:10636152-10636272 1.0000 120 chr2R:21282338-21282458 1.0000 120 chr3R:10566957-10567077 1.0000 120 chr3R:30767255-30767375 1.0000 120 chr2L:13082319-13082439 1.0000 120 chr2L:1123542-1123662 1.0000 120 chr2R:16829052-16829172 1.0000 120 chr3R:24298530-24298650 1.0000 120 chr3R:21206380-21206500 1.0000 120 chr3R:22324852-22324972 1.0000 120 chr2L:827689-827809 1.0000 120 chr2L:19796169-19796289 1.0000 120 chrX:3136853-3136973 1.0000 120 chr2R:10238132-10238252 1.0000 120 chrX:10744767-10744887 1.0000 120 chr2R:14332348-14332468 1.0000 120 chr3R:28590634-28590754 1.0000 120 chr3R:29265200-29265320 1.0000 120 chr2L:7043198-7043318 1.0000 120 chr3R:6723884-6724004 1.0000 120 chr2L:6283441-6283561 1.0000 120 chr3R:28556515-28556635 1.0000 120 chr3R:15670634-15670754 1.0000 120 chr3L:5926063-5926183 1.0000 120 chr3R:8308795-8308915 1.0000 120 chr2L:9190444-9190564 1.0000 120 chrX:10738949-10739069 1.0000 120 chr2R:10555573-10555693 1.0000 120 chr3L:3380545-3380665 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG2875/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2875.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.312 C 0.191 G 0.195 T 0.302 Background letter frequencies (from file dataset with add-one prior applied): A 0.312 C 0.191 G 0.195 T 0.302 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WRYAAAYA MEME-1 width = 8 sites = 111 llr = 807 E-value = 7.8e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRYAAAYA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 54:aaa:a pos.-specific C ::6:::5: probability G 26:::::: matrix T 3:4:::5: bits 2.4 2.2 1.9 1.7 *** * Relative 1.4 *** * Entropy 1.2 ***** * (10.5 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel AGCAAACA consensus TAT T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAAYA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10238132-10238252 50 2.10e-05 TTAATCGCTG AGCAAACA GGAAGACTTC chrX:17473437-17473557 50 2.10e-05 atttaCACAC AGCAAACA GCAACGACAC chr2R:11792793-11792913 12 2.10e-05 AGAACAGGCA AGCAAACA ACATGAAATA chr3L:3080706-3080826 45 2.10e-05 GCaataaata agcaaaca aacaaacaaa chr2R:24746086-24746206 43 2.10e-05 TAAacaaaca agcaaaca cacacacaca chr2L:5303767-5303887 18 2.10e-05 AGCACACCAC AGCAAACA GAGTGGAGTG chr3L:16429580-16429700 86 2.10e-05 CATGGTAAAT AGCAAACA ACAAATAGTA chr3L:4615202-4615322 74 2.10e-05 TTGCTTGCTG AGCAAACA TGGTAGATAA chrX:10738949-10739069 67 3.42e-05 AACAAACACA GGCAAACA GAGAGcagac chr2R:19413340-19413460 107 3.42e-05 CTCCGAAACC GGCAAACA AAAAAC chr3R:25885270-25885390 53 3.42e-05 CGATAAGGTC GGCAAACA AAATACTTAT chr3R:23445370-23445490 55 3.42e-05 aaagacaaac ggcaaaca gcgaacaaca chr3L:3755807-3755927 36 3.42e-05 AAACCAACTG GGCAAACA AGTTGGAGAA chr3L:8379297-8379417 79 3.42e-05 ATGTTTGTCG GGCAAACA ATGGGGCGGA chr3L:1690836-1690956 74 3.42e-05 ACCATATATG GGCAAACA TTTAGACAAA chr2R:18877760-18877880 14 3.42e-05 ACTCAATTTG GGCAAACA CTTGAAACTG chr2R:12741224-12741344 13 3.42e-05 ACGAAATTCT GGCAAACA ACAGACGGAG chr2L:20327526-20327646 95 3.42e-05 CTGACCGTTA GGCAAACA ATGAACAATT chr2L:9190444-9190564 76 8.78e-05 ATGTTTAAAA AGCAAATA CAATAAAGCA chr3R:8308795-8308915 30 8.78e-05 TTGTTTGCGC TGCAAACA TTTAAACAAG chr3R:28590634-28590754 73 8.78e-05 GAAACGCCAA AGCAAATA TGATTGGAGT chr2L:13082319-13082439 75 8.78e-05 TGTGTCAATG TGCAAACA AAGCCGCCAA chr3R:10566957-10567077 27 8.78e-05 GGAAATCTTG TGCAAACA ATGAAATTAG chr2R:14906345-14906465 113 8.78e-05 GTTGTATGAG AGCAAATA chr2L:2864703-2864823 65 8.78e-05 GCGTCGGCTG TGCAAACA TTTGCATTTG chr3R:18438353-18438473 50 8.78e-05 TTGCTATGAA TGCAAACA CAAAGTTGTT chr3R:14284533-14284653 29 8.78e-05 CGGCCACCGA AGCAAATA GAAATCACAC chr2R:17274110-17274230 63 8.78e-05 CGCACACCAA TGCAAACA CGATTACAAC chr3R:29757318-29757438 69 8.78e-05 TGCAAATACG TGCAAACA GCCAAGTAAC chr2L:2494633-2494753 81 8.78e-05 TGCGCCCTTG TGCAAACA CACGGAAAAC chr2R:23180956-23181076 60 8.78e-05 ATTTGTAAAA TGCAAACA GAACACGCAA chrX:3967764-3967884 11 8.78e-05 ATAAATAGCA AGCAAATA GTCAATATTT chr3L:17656816-17656936 18 8.78e-05 AAATTCGAAG AGCAAATA ATATTGTTTA chr3R:6765019-6765139 48 8.78e-05 CGTCGGCTTG TGCAAACA CACATTAATA chr3L:15742152-15742272 98 8.78e-05 CGAACGCAAG TGCAAACA GCGCCCAACC chr3L:5785372-5785492 27 8.78e-05 ATAAACAAAG TGCAAACA TGGATTTATA chr2R:22199998-22200118 82 8.78e-05 GACTGGGAAA AGCAAATA GGCCATGTTT chr2L:12509607-12509727 67 8.78e-05 AACAAATAAT AGCAAATA TTGAACCATT chrX:15497829-15497949 61 8.78e-05 GAGCAAAATA AGCAAATA AAGCCGTCTC chr2R:11706361-11706481 74 8.78e-05 CTTATGAGCG TGCAAACA GCATTGGAAG chr3L:18242262-18242382 42 1.09e-04 TTTGGTTCTG GGCAAATA GAAAGGCACT chr2L:9775338-9775458 113 1.09e-04 AATTGTTTGC GGCAAATA chrX:8837321-8837441 51 1.09e-04 TGACAGTATT GGCAAATA AAACTATATT chr3R:15677862-15677982 108 1.09e-04 GTTTGATGTG GGCAAATA AATCA chr3R:24293304-24293424 42 1.42e-04 ATATTTTTTC AGTAAACA CAATTGATTG chr3R:26539262-26539382 76 1.42e-04 TAAATAAACA AGTAAACA AGCCAGCAGC chrX:8413110-8413230 18 1.42e-04 CATTAAGAAA AGTAAACA CCTGCCATAA chrX:3136853-3136973 72 2.08e-04 CTAATCACTG AACAAACA Ccgaatcgta chr3L:21007861-21007981 92 2.08e-04 ACGGACAAAT AACAAACA AAGCAAAAAT chr3L:21130948-21131068 10 2.08e-04 TAGGATCCA AACAAACA CACACAGCGT chr3L:10858591-10858711 68 2.08e-04 ATGTATTCCA AACAAACA ACGAAGCGCA chr3R:11993438-11993558 63 2.08e-04 catatgtatA TGCAAATA GTGCGGGTGG chrX:15591779-15591899 15 2.08e-04 TAATAAAATA AACAAACA GCTTGGAAAA chrX:362270-362390 71 2.08e-04 ACTGTCGAAA AACAAACA GAGGAACAAA chr3L:351145-351265 102 2.08e-04 ACCATAAAAT AACAAACA AGAAAATAAA chr3L:11491922-11492042 64 2.08e-04 TGCATACAAA TGCAAATA CACCACCCAC chr2R:7167945-7168065 24 2.08e-04 TTTAATAATA AACAAACA CGAGCACAAA chrX:13645211-13645331 11 2.08e-04 CAAATTTACC AACAAACA AAGCAACAAC chr2R:14494801-14494921 43 2.28e-04 TTGTTGACTG GGTAAACA TCGAAGAAAG chr3L:18198259-18198379 110 2.28e-04 TAAACTAAAT GGTAAACA AAT chr3R:30767255-30767375 52 3.34e-04 GTTTATCGAG TGTAAACA AAGCATAAAA chr3R:16769511-16769631 3 3.34e-04 CG AGTAAATA TGCACAGAAA chr3R:21629861-21629981 78 3.34e-04 GTAGTGGCCG AGTAAATA ATTCCGTTGG chr2R:14109806-14109926 54 3.34e-04 TATCAATAAA AGTAAATA CGAGAAATGA chr2R:9266558-9266678 56 3.34e-04 CATTCGGAAA TGTAAACA AACCAAACGT chr2R:14073595-14073715 103 3.34e-04 GCCAGCAAAA AGTAAATA CCCACTGCCG chr3R:21263315-21263435 94 3.34e-04 AATGTCCACA TGTAAACA CAGCTGTACA chr3R:8155907-8156027 76 3.34e-04 ATATATACCG AGTAAATA GATTCTCCCC chr3R:6665428-6665548 81 3.34e-04 TGACAATCAA TGTAAACA CCACAGTCGC chr2L:9614131-9614251 63 3.34e-04 AATATTGGGA AGTAAATA CGTGAAAGCA chr3R:10150704-10150824 61 3.34e-04 TGGCTTTAAA AGTAAATA CGGGAGGTAA chr3R:21206380-21206500 52 4.20e-04 acatagaaaa aacaaata gtcaatacac chr3R:5746774-5746894 61 4.20e-04 ACTACTATTA AACAAATA AAGATGGCAA chr3R:21865176-21865296 76 4.20e-04 GTTGTTTACT AACAAATA TAAACTTAAG chr3R:5327998-5328118 50 4.20e-04 AAGCAGTGAA AACAAATA TGCATCTTCT chr2R:17272620-17272740 87 4.20e-04 TGCGAATGTG AACAAATA TTTAGTGGAG chr3L:6140296-6140416 41 4.20e-04 CCCAACAAAA AACAAATA TTTGGTCAAT chr2R:6503174-6503294 35 4.20e-04 ATAGCGTCAA TACAAACA GTTTGACAAT chr3R:27254138-27254258 78 4.20e-04 ATTCTTCGCA AACAAATA ATTTACATAC chr2R:7756393-7756513 21 4.20e-04 CAGCTAGGAT AACAAATA ACAACAAATG chrX:17582816-17582936 49 4.53e-04 TTTGCTTAGT GGTAAATA CATATTTGTA chr3R:23947149-23947269 57 4.53e-04 TGTTTGCGTT GGTAAATA GTGACAAGTT chrX:10115661-10115781 59 4.53e-04 TTGATCATTG GGTAAATA TCAACAAGCG chr2R:13532037-13532157 28 4.53e-04 CATAAAGTAA GGTAAATA CTATTTACAT chr3R:27138132-27138252 88 4.86e-04 AAATGAAGTT GACAAATA TGGTAGAGAT chr3R:31309415-31309535 20 4.86e-04 ATCACGATGC GACAAATA TTTATACAAG chr2L:117896-118016 74 5.90e-04 TAACGGCCAA AATAAACA TAGATGGTAG chr2L:856135-856255 63 5.90e-04 TGCCAAGCTG AATAAACA AGCCGCAAGT chr2L:470042-470162 48 5.90e-04 TGTATGGCTC TGTAAATA TCTGAGTGTT chr3L:16640599-16640719 89 5.90e-04 CACTGGGTGC AATAAACA TAAATAATAA chr2L:1094812-1094932 104 5.90e-04 ACCACAACCA TGTAAATA TATTATTAT chr2R:22540015-22540135 73 5.90e-04 ACAGATACTC TGTAAATA CGCGCACATA chr2L:10497547-10497667 27 5.90e-04 CATCAACCTA TGTAAATA TGTGGCCAAA chr3L:19191977-19192097 81 6.42e-04 GGAAAATAAA TACAAATA AATCCACACA chr3R:25524346-25524466 71 6.42e-04 TACAAATGCG TACAAATA TGTACTTGCC chrX:7227491-7227611 95 6.42e-04 ACAATACAAA TACAAATA TTTTAGCGAC chr2L:5338766-5338886 14 6.42e-04 TCAAAATTTC TACAAATA TGCACTTAGC chr2L:18496941-18497061 76 6.75e-04 GAAATCGTTG GATAAACA TGAAACAGTT chr3R:6723884-6724004 84 8.11e-04 TGGTTTTGGA AATAAATA TTGTAGAACG chr2L:1123542-1123662 104 8.11e-04 ACCTATTTCC TATAAACA AACTTAAAA chr2L:19121099-19121219 42 8.11e-04 GGCAAGAAAC AATAAATA TGTGGCTTAA chr3R:4975310-4975430 28 8.11e-04 GTGTTTTCTT TATAAACA GAAAACTTAA chr3L:2468503-2468623 12 8.11e-04 GATCTGAAAA AATAAATA CCTATTGGTT chrX:20506055-20506175 99 8.11e-04 tgaatattaa aataaata ctaattcaGA chr2L:6461673-6461793 42 8.11e-04 GTCGGGCGAA AATAAATA TTTGACTATA chr2L:14235142-14235262 33 8.11e-04 AAATAATTTA AATAAATA TAATATATTT chr3R:21271336-21271456 54 8.11e-04 tcGCAACAAG AATAAATA TGTACAAAAG chr3R:8980246-8980366 72 8.11e-04 GCTACAGCAA AATAAATA CAAAACGTGG chr3L:754674-754794 61 8.11e-04 AGCTTGAGAA AATAAATA TTTTAAAAAT chr2R:10485630-10485750 17 8.11e-04 GTTGAATACA TATAAACA CAGCTTCCGG chr3L:16056354-16056474 60 8.63e-04 ATGTTTGCTT GATAAATA AGTGGAGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAAYA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10238132-10238252 2.1e-05 49_[+1]_63 chrX:17473437-17473557 2.1e-05 49_[+1]_63 chr2R:11792793-11792913 2.1e-05 11_[+1]_101 chr3L:3080706-3080826 2.1e-05 44_[+1]_68 chr2R:24746086-24746206 2.1e-05 42_[+1]_70 chr2L:5303767-5303887 2.1e-05 17_[+1]_95 chr3L:16429580-16429700 2.1e-05 85_[+1]_27 chr3L:4615202-4615322 2.1e-05 73_[+1]_39 chrX:10738949-10739069 3.4e-05 66_[+1]_46 chr2R:19413340-19413460 3.4e-05 106_[+1]_6 chr3R:25885270-25885390 3.4e-05 52_[+1]_60 chr3R:23445370-23445490 3.4e-05 54_[+1]_58 chr3L:3755807-3755927 3.4e-05 35_[+1]_77 chr3L:8379297-8379417 3.4e-05 78_[+1]_34 chr3L:1690836-1690956 3.4e-05 73_[+1]_39 chr2R:18877760-18877880 3.4e-05 13_[+1]_99 chr2R:12741224-12741344 3.4e-05 12_[+1]_100 chr2L:20327526-20327646 3.4e-05 94_[+1]_18 chr2L:9190444-9190564 8.8e-05 75_[+1]_37 chr3R:8308795-8308915 8.8e-05 29_[+1]_83 chr3R:28590634-28590754 8.8e-05 72_[+1]_40 chr2L:13082319-13082439 8.8e-05 74_[+1]_38 chr3R:10566957-10567077 8.8e-05 26_[+1]_86 chr2R:14906345-14906465 8.8e-05 112_[+1] chr2L:2864703-2864823 8.8e-05 64_[+1]_48 chr3R:18438353-18438473 8.8e-05 49_[+1]_63 chr3R:14284533-14284653 8.8e-05 28_[+1]_84 chr2R:17274110-17274230 8.8e-05 62_[+1]_50 chr3R:29757318-29757438 8.8e-05 68_[+1]_44 chr2L:2494633-2494753 8.8e-05 80_[+1]_32 chr2R:23180956-23181076 8.8e-05 59_[+1]_53 chrX:3967764-3967884 8.8e-05 10_[+1]_102 chr3L:17656816-17656936 8.8e-05 17_[+1]_95 chr3R:6765019-6765139 8.8e-05 47_[+1]_65 chr3L:15742152-15742272 8.8e-05 97_[+1]_15 chr3L:5785372-5785492 8.8e-05 26_[+1]_86 chr2R:22199998-22200118 8.8e-05 81_[+1]_31 chr2L:12509607-12509727 8.8e-05 66_[+1]_46 chrX:15497829-15497949 8.8e-05 60_[+1]_52 chr2R:11706361-11706481 8.8e-05 73_[+1]_39 chr3L:18242262-18242382 0.00011 41_[+1]_71 chr2L:9775338-9775458 0.00011 112_[+1] chrX:8837321-8837441 0.00011 50_[+1]_62 chr3R:15677862-15677982 0.00011 107_[+1]_5 chr3R:24293304-24293424 0.00014 41_[+1]_71 chr3R:26539262-26539382 0.00014 75_[+1]_37 chrX:8413110-8413230 0.00014 17_[+1]_95 chrX:3136853-3136973 0.00021 71_[+1]_41 chr3L:21007861-21007981 0.00021 91_[+1]_21 chr3L:21130948-21131068 0.00021 9_[+1]_103 chr3L:10858591-10858711 0.00021 67_[+1]_45 chr3R:11993438-11993558 0.00021 62_[+1]_50 chrX:15591779-15591899 0.00021 14_[+1]_98 chrX:362270-362390 0.00021 70_[+1]_42 chr3L:351145-351265 0.00021 101_[+1]_11 chr3L:11491922-11492042 0.00021 63_[+1]_49 chr2R:7167945-7168065 0.00021 23_[+1]_89 chrX:13645211-13645331 0.00021 10_[+1]_102 chr2R:14494801-14494921 0.00023 42_[+1]_70 chr3L:18198259-18198379 0.00023 109_[+1]_3 chr3R:30767255-30767375 0.00033 51_[+1]_61 chr3R:16769511-16769631 0.00033 2_[+1]_110 chr3R:21629861-21629981 0.00033 77_[+1]_35 chr2R:14109806-14109926 0.00033 53_[+1]_59 chr2R:9266558-9266678 0.00033 55_[+1]_57 chr2R:14073595-14073715 0.00033 102_[+1]_10 chr3R:21263315-21263435 0.00033 93_[+1]_19 chr3R:8155907-8156027 0.00033 75_[+1]_37 chr3R:6665428-6665548 0.00033 80_[+1]_32 chr2L:9614131-9614251 0.00033 62_[+1]_50 chr3R:10150704-10150824 0.00033 60_[+1]_52 chr3R:21206380-21206500 0.00042 51_[+1]_61 chr3R:5746774-5746894 0.00042 60_[+1]_52 chr3R:21865176-21865296 0.00042 75_[+1]_37 chr3R:5327998-5328118 0.00042 49_[+1]_63 chr2R:17272620-17272740 0.00042 86_[+1]_26 chr3L:6140296-6140416 0.00042 40_[+1]_72 chr2R:6503174-6503294 0.00042 34_[+1]_78 chr3R:27254138-27254258 0.00042 77_[+1]_35 chr2R:7756393-7756513 0.00042 20_[+1]_92 chrX:17582816-17582936 0.00045 48_[+1]_64 chr3R:23947149-23947269 0.00045 56_[+1]_56 chrX:10115661-10115781 0.00045 58_[+1]_54 chr2R:13532037-13532157 0.00045 27_[+1]_85 chr3R:27138132-27138252 0.00049 87_[+1]_25 chr3R:31309415-31309535 0.00049 19_[+1]_93 chr2L:117896-118016 0.00059 73_[+1]_39 chr2L:856135-856255 0.00059 62_[+1]_50 chr2L:470042-470162 0.00059 47_[+1]_65 chr3L:16640599-16640719 0.00059 88_[+1]_24 chr2L:1094812-1094932 0.00059 103_[+1]_9 chr2R:22540015-22540135 0.00059 72_[+1]_40 chr2L:10497547-10497667 0.00059 26_[+1]_86 chr3L:19191977-19192097 0.00064 80_[+1]_32 chr3R:25524346-25524466 0.00064 70_[+1]_42 chrX:7227491-7227611 0.00064 94_[+1]_18 chr2L:5338766-5338886 0.00064 13_[+1]_99 chr2L:18496941-18497061 0.00068 75_[+1]_37 chr3R:6723884-6724004 0.00081 83_[+1]_29 chr2L:1123542-1123662 0.00081 103_[+1]_9 chr2L:19121099-19121219 0.00081 41_[+1]_71 chr3R:4975310-4975430 0.00081 27_[+1]_85 chr3L:2468503-2468623 0.00081 11_[+1]_101 chrX:20506055-20506175 0.00081 98_[+1]_14 chr2L:6461673-6461793 0.00081 41_[+1]_71 chr2L:14235142-14235262 0.00081 32_[+1]_80 chr3R:21271336-21271456 0.00081 53_[+1]_59 chr3R:8980246-8980366 0.00081 71_[+1]_41 chr3L:754674-754794 0.00081 60_[+1]_52 chr2R:10485630-10485750 0.00081 16_[+1]_96 chr3L:16056354-16056474 0.00086 59_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAAYA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRYAAAYA width=8 seqs=111 chr2R:10238132-10238252 ( 50) AGCAAACA 1 chrX:17473437-17473557 ( 50) AGCAAACA 1 chr2R:11792793-11792913 ( 12) AGCAAACA 1 chr3L:3080706-3080826 ( 45) AGCAAACA 1 chr2R:24746086-24746206 ( 43) AGCAAACA 1 chr2L:5303767-5303887 ( 18) AGCAAACA 1 chr3L:16429580-16429700 ( 86) AGCAAACA 1 chr3L:4615202-4615322 ( 74) AGCAAACA 1 chrX:10738949-10739069 ( 67) GGCAAACA 1 chr2R:19413340-19413460 ( 107) GGCAAACA 1 chr3R:25885270-25885390 ( 53) GGCAAACA 1 chr3R:23445370-23445490 ( 55) GGCAAACA 1 chr3L:3755807-3755927 ( 36) GGCAAACA 1 chr3L:8379297-8379417 ( 79) GGCAAACA 1 chr3L:1690836-1690956 ( 74) GGCAAACA 1 chr2R:18877760-18877880 ( 14) GGCAAACA 1 chr2R:12741224-12741344 ( 13) GGCAAACA 1 chr2L:20327526-20327646 ( 95) GGCAAACA 1 chr2L:9190444-9190564 ( 76) AGCAAATA 1 chr3R:8308795-8308915 ( 30) TGCAAACA 1 chr3R:28590634-28590754 ( 73) AGCAAATA 1 chr2L:13082319-13082439 ( 75) TGCAAACA 1 chr3R:10566957-10567077 ( 27) TGCAAACA 1 chr2R:14906345-14906465 ( 113) AGCAAATA 1 chr2L:2864703-2864823 ( 65) TGCAAACA 1 chr3R:18438353-18438473 ( 50) TGCAAACA 1 chr3R:14284533-14284653 ( 29) AGCAAATA 1 chr2R:17274110-17274230 ( 63) TGCAAACA 1 chr3R:29757318-29757438 ( 69) TGCAAACA 1 chr2L:2494633-2494753 ( 81) TGCAAACA 1 chr2R:23180956-23181076 ( 60) TGCAAACA 1 chrX:3967764-3967884 ( 11) AGCAAATA 1 chr3L:17656816-17656936 ( 18) AGCAAATA 1 chr3R:6765019-6765139 ( 48) TGCAAACA 1 chr3L:15742152-15742272 ( 98) TGCAAACA 1 chr3L:5785372-5785492 ( 27) TGCAAACA 1 chr2R:22199998-22200118 ( 82) AGCAAATA 1 chr2L:12509607-12509727 ( 67) AGCAAATA 1 chrX:15497829-15497949 ( 61) AGCAAATA 1 chr2R:11706361-11706481 ( 74) TGCAAACA 1 chr3L:18242262-18242382 ( 42) GGCAAATA 1 chr2L:9775338-9775458 ( 113) GGCAAATA 1 chrX:8837321-8837441 ( 51) GGCAAATA 1 chr3R:15677862-15677982 ( 108) GGCAAATA 1 chr3R:24293304-24293424 ( 42) AGTAAACA 1 chr3R:26539262-26539382 ( 76) AGTAAACA 1 chrX:8413110-8413230 ( 18) AGTAAACA 1 chrX:3136853-3136973 ( 72) AACAAACA 1 chr3L:21007861-21007981 ( 92) AACAAACA 1 chr3L:21130948-21131068 ( 10) AACAAACA 1 chr3L:10858591-10858711 ( 68) AACAAACA 1 chr3R:11993438-11993558 ( 63) TGCAAATA 1 chrX:15591779-15591899 ( 15) AACAAACA 1 chrX:362270-362390 ( 71) AACAAACA 1 chr3L:351145-351265 ( 102) AACAAACA 1 chr3L:11491922-11492042 ( 64) TGCAAATA 1 chr2R:7167945-7168065 ( 24) AACAAACA 1 chrX:13645211-13645331 ( 11) AACAAACA 1 chr2R:14494801-14494921 ( 43) GGTAAACA 1 chr3L:18198259-18198379 ( 110) GGTAAACA 1 chr3R:30767255-30767375 ( 52) TGTAAACA 1 chr3R:16769511-16769631 ( 3) AGTAAATA 1 chr3R:21629861-21629981 ( 78) AGTAAATA 1 chr2R:14109806-14109926 ( 54) AGTAAATA 1 chr2R:9266558-9266678 ( 56) TGTAAACA 1 chr2R:14073595-14073715 ( 103) AGTAAATA 1 chr3R:21263315-21263435 ( 94) TGTAAACA 1 chr3R:8155907-8156027 ( 76) AGTAAATA 1 chr3R:6665428-6665548 ( 81) TGTAAACA 1 chr2L:9614131-9614251 ( 63) AGTAAATA 1 chr3R:10150704-10150824 ( 61) AGTAAATA 1 chr3R:21206380-21206500 ( 52) AACAAATA 1 chr3R:5746774-5746894 ( 61) AACAAATA 1 chr3R:21865176-21865296 ( 76) AACAAATA 1 chr3R:5327998-5328118 ( 50) AACAAATA 1 chr2R:17272620-17272740 ( 87) AACAAATA 1 chr3L:6140296-6140416 ( 41) AACAAATA 1 chr2R:6503174-6503294 ( 35) TACAAACA 1 chr3R:27254138-27254258 ( 78) AACAAATA 1 chr2R:7756393-7756513 ( 21) AACAAATA 1 chrX:17582816-17582936 ( 49) GGTAAATA 1 chr3R:23947149-23947269 ( 57) GGTAAATA 1 chrX:10115661-10115781 ( 59) GGTAAATA 1 chr2R:13532037-13532157 ( 28) GGTAAATA 1 chr3R:27138132-27138252 ( 88) GACAAATA 1 chr3R:31309415-31309535 ( 20) GACAAATA 1 chr2L:117896-118016 ( 74) AATAAACA 1 chr2L:856135-856255 ( 63) AATAAACA 1 chr2L:470042-470162 ( 48) TGTAAATA 1 chr3L:16640599-16640719 ( 89) AATAAACA 1 chr2L:1094812-1094932 ( 104) TGTAAATA 1 chr2R:22540015-22540135 ( 73) TGTAAATA 1 chr2L:10497547-10497667 ( 27) TGTAAATA 1 chr3L:19191977-19192097 ( 81) TACAAATA 1 chr3R:25524346-25524466 ( 71) TACAAATA 1 chrX:7227491-7227611 ( 95) TACAAATA 1 chr2L:5338766-5338886 ( 14) TACAAATA 1 chr2L:18496941-18497061 ( 76) GATAAACA 1 chr3R:6723884-6724004 ( 84) AATAAATA 1 chr2L:1123542-1123662 ( 104) TATAAACA 1 chr2L:19121099-19121219 ( 42) AATAAATA 1 chr3R:4975310-4975430 ( 28) TATAAACA 1 chr3L:2468503-2468623 ( 12) AATAAATA 1 chrX:20506055-20506175 ( 99) AATAAATA 1 chr2L:6461673-6461793 ( 42) AATAAATA 1 chr2L:14235142-14235262 ( 33) AATAAATA 1 chr3R:21271336-21271456 ( 54) AATAAATA 1 chr3R:8980246-8980366 ( 72) AATAAATA 1 chr3L:754674-754794 ( 61) AATAAATA 1 chr2R:10485630-10485750 ( 17) TATAAACA 1 chr3L:16056354-16056474 ( 60) GATAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAAYA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.65489 E= 7.8e-027 69 -1344 15 -11 24 -1344 169 -1344 -1344 173 -1344 29 168 -1344 -1344 -1344 168 -1344 -1344 -1344 168 -1344 -1344 -1344 -1344 143 -1344 69 168 -1344 -1344 -1344 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAAYA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 7.8e-027 0.504505 0.000000 0.216216 0.279279 0.369369 0.000000 0.630631 0.000000 0.000000 0.630631 0.000000 0.369369 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.513514 0.000000 0.486486 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAAYA MEME-1 regular expression -------------------------------------------------------------------------------- [ATG][GA][CT]AAA[CT]A -------------------------------------------------------------------------------- Time 8.09 secs. ******************************************************************************** ******************************************************************************** MOTIF WTRTTTRY MEME-2 width = 8 sites = 117 llr = 815 E-value = 4.8e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:5:::4: pos.-specific C 2::::::5 probability G 1:5:::6: matrix T 5a:aaa:5 bits 2.4 2.2 1.9 1.7 * * * Relative 1.4 * *** Entropy 1.2 * ***** (10.0 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******* 0.0 -------- Multilevel TTGTTTGC consensus A A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8308795-8308915 20 1.82e-05 AATTACGCTA TTGTTTGC GCTGCAAACA chr2L:7043198-7043318 35 1.82e-05 TTGCCGATGT TTGTTTGC ATTAGGTGTG chr2R:19413340-19413460 47 1.82e-05 TACATCACAC TTGTTTGC TGCGGGACAC chr2L:9775338-9775458 105 1.82e-05 GAATAGGAAA TTGTTTGC GGCAAATA chrX:4458027-4458147 106 1.82e-05 TTTCATCtgt ttgtttgc gtgtctg chr2L:16520042-16520162 68 1.82e-05 tttttttttt ttgtttgc ttgGGATCGC chrX:1387357-1387477 43 1.82e-05 CAAACTTTGC TTGTTTGC ACTGCTCAGC chr2R:13305617-13305737 9 1.82e-05 TGCGGCGA TTGTTTGC CTCTTCTGTG chr2R:12741224-12741344 63 1.82e-05 TCTTGTTTAT TTGTTTGC CTTTAATCAG chr2R:24323418-24323538 50 1.82e-05 gtttgtttgt ttgttTGC TCAAGACAAC chrX:19839260-19839380 63 1.82e-05 TTTACGACTC TTGTTTGC ATATTTGCAT chrX:17582816-17582936 36 9.51e-05 ATGCCAACCA TTATTTGC TTAGTGGTAA chrX:20506055-20506175 47 9.51e-05 CGATTTCAAT ATGTTTGC ACTTCCCATT chr2L:3851455-3851575 112 9.51e-05 GTATATAATA TTATTTGC T chr3L:17656816-17656936 103 9.51e-05 TTATTAATTC TTATTTGC TGTCCTTGTT chr3L:14354647-14354767 42 9.51e-05 CACTCGTCGT TTGTTTGT TGAGAAAACA chr3L:16056354-16056474 50 9.51e-05 GTCAACATCA ATGTTTGC TTGATAAATA chr3L:614860-614980 63 9.51e-05 ATCTATTGGA TTGTTTGT CTGTCTGCCT chr2R:22540015-22540135 48 9.51e-05 GTAAATTTCC ATGTTTGC GCACTTAACA chr3R:19467595-19467715 69 9.51e-05 CATACCCACA TTGTTTGT CTACAGCGAC chr3R:27254138-27254258 97 9.51e-05 TTTACATACT TTATTTGC GTTTTGCATA chr3L:8925812-8925932 65 9.51e-05 CGTTATTATG TTGTTTGT TCGTTGTTTA chr2R:18877760-18877880 41 9.51e-05 Gtttatttat ttatttgc ttatttatCA chr2R:16162558-16162678 105 9.51e-05 CAAGAAGTGT TTATTTGC CCCGAGCG chr3L:16429580-16429700 53 9.51e-05 ATGTTTCTTT TTGTTTGT TCCATAACAA chr3L:4615202-4615322 30 9.51e-05 AAAtgtttgt ttgtttgt ctgtctggct chr2R:11792793-11792913 40 1.07e-04 CTTTTGTGCT CTGTTTGC ACTGTGCCGA chr3R:23947149-23947269 46 1.07e-04 CGCACATCAT CTGTTTGC GTTGGTAAAT chr3R:23445370-23445490 10 1.07e-04 TCCACGCGA CTGTTTGC CGTACGCATT chr2L:1094812-1094932 63 1.07e-04 ACTGTTTGCA CTGTTTGC CCCCCCTCCT chr3R:21865176-21865296 67 1.36e-04 TTAAATTTAG TTGTTTAC TAACAAATAT chr3L:19073293-19073413 67 1.36e-04 GTAAACGACG TTGTTTAC TCGCACCCAG chr3R:6182645-6182765 87 1.36e-04 GGCATTGCCT TTGTTTAC CAAACAATGG chr2L:2494633-2494753 62 1.36e-04 CGGCTATTCT TTGTTTAC ATGCGCCCTT chrX:3967764-3967884 72 1.36e-04 TTGATTTGTT TTGTTTAC ATTCATACCA chr2L:8423973-8424093 14 1.36e-04 TTTCTCAACG TTGTTTAC CCATATTACT chr3L:11003045-11003165 14 1.36e-04 GGCTTACACT TTGTTTAC AATGTTGCCT chr3R:28556515-28556635 105 2.54e-04 CGAGAGATGT GTGTTTGC ACAGGCCC chr3R:27138132-27138252 17 2.54e-04 GCAACTTGCT TTATTTGT ACAAGAGGTG chr3R:24293304-24293424 76 2.54e-04 ATAAATATTT ATGTTTGT CAAAATACTG chr3R:5323737-5323857 21 2.54e-04 GCGCGTTCTG TTATTTGT GTTCCGTTTT chrX:22837526-22837646 20 2.54e-04 AAAAAAACCC GTGTTTGC AATACAATTA chr3L:12350457-12350577 61 2.54e-04 CGAGGCTGCG ATATTTGC ACAGTTGTGT chr3R:17828788-17828908 61 2.54e-04 TCTAGGTGGA ATGTTTGT GTTTGTATTT chr3L:16670311-16670431 79 2.54e-04 CACTTGGGTG TTATTTGT CTAATTCGAC chrX:2462127-2462247 28 2.54e-04 ATTTTTGTTT TTATTTGT TTCGCTTATT chr3L:16640599-16640719 62 2.54e-04 AAAGTTGTTT ATGTTTGT GGTGCCATGC chr2L:2749197-2749317 38 2.54e-04 CGCCCCTTTG ATGTTTGT ATGTCAATAT chr3L:5785372-5785492 48 2.54e-04 ATTTATATCA ATATTTGC ACACAATTTG chr3L:6140296-6140416 63 2.54e-04 GTCAATGCGC GTGTTTGC CTACAAGTAG chrX:21334660-21334780 105 2.54e-04 TCAATTTAGT TTATTTGT GCCTCTTC chr3L:8379297-8379417 69 2.54e-04 GGAGTACAGA ATGTTTGT CGGGCAAACA chrX:3358995-3359115 8 2.54e-04 GCAAACA GTGTTTGC TCCTAACATA chr2L:5303767-5303887 60 2.54e-04 TTACACATAC ATATTTGC ATACTGATAA chr2R:13532037-13532157 64 2.54e-04 GTTAATACTT TTATTTGT CTTCTTTTTT chr2L:10497547-10497667 108 2.54e-04 CTAGATAAAC ATATTTGC ATTAC chr3R:10150704-10150824 42 2.54e-04 TAGCCGCCTC TTATTTGT TTGGCTTTAA chr2R:12729332-12729452 50 2.54e-04 GCCCTTGTTT ATATTTGC ATAAATATTT chr3R:24298530-24298650 55 2.90e-04 TTATCTGTCG CTATTTGC ATACGCAGCG chr2R:22657109-22657229 32 2.90e-04 AGTTGTTCAT CTGTTTGT CAAGCCCCCG chrX:11823213-11823333 60 2.90e-04 TCTTTGCTTT CTATTTGC AGTTGACAAC chr3R:26908894-26909014 64 2.90e-04 AAGTCAAACA CTGTTTGT TGACGTTACC chr3R:19014877-19014997 8 2.90e-04 TTTATTT CTGTTTGT ACACAAAGAG chr3L:19847085-19847205 69 2.90e-04 GTTTAAACGA CTGTTTGT CTGCCATAAA chr3R:28590634-28590754 92 4.13e-04 GATTGGAGTT TTATTTAC TCTGGCCCGT chr2L:1123542-1123662 3 4.13e-04 GC ATGTTTAC TCATAACTAA chr2R:21282338-21282458 20 4.13e-04 CGACGGAGTA ATGTTTAC TGCAGCTGTT chr3R:18438353-18438473 11 4.13e-04 ATTGCAGTTT TTATTTAC ACTTGCGCTT chr3R:26539262-26539382 19 4.13e-04 TCTGTCGCTG TTGTTTAT TTGGTTTTGC chr3L:8058385-8058505 20 4.13e-04 CACATCGCCA TTATTTAC CTATGCTTAT chr2R:13960913-13961033 94 4.13e-04 GTGTGGCGAC TTATTTAC ACTTTAATTG chrX:362270-362390 2 4.13e-04 T TTATTTAC ACTACCAGGC chr2L:18496941-18497061 9 4.13e-04 CTGGCCAT TTGTTTAT GTGTGTTTTA chr3L:13232950-13233070 56 4.32e-04 AACTAATGGA CTGTTTAC TTATTTATGG chrX:3136853-3136973 36 5.17e-04 GCTTACTTGG GTATTTGC ATATGGAGCG chrX:13764575-13764695 29 5.17e-04 ATGAATGAAA ATATTTGT GATATTGCTC chr3R:13549723-13549843 44 5.17e-04 TATGTACTGA ATATTTGT TTTGTATAAA chr2L:12465842-12465962 34 5.17e-04 AAATATTTGT ATATTTGT GTATATAGTG chr3L:14166444-14166564 79 5.17e-04 TAGAAGAACT GTGTTTGT ACTGACCCTA chr3R:15677862-15677982 90 5.17e-04 TGTGCCACTC GTGTTTGT GTTTGATGTG chr3R:18785941-18786061 55 5.46e-04 TTTACTTTCT CTATTTGT GGATAAGTAA chrX:17473437-17473557 25 7.35e-04 ttcttttagt ttatttat ttatgatatt chr2L:19121099-19121219 60 7.35e-04 TGTGGCTTAA ATGTTTAT GCCAAATATA chr3R:11617515-11617635 49 7.35e-04 TAAGCTCTTG TTATTTAT AACCTCGTAT chr3R:15983736-15983856 17 7.35e-04 TGCTTACTAA ATATTTAC TTCTGTCCCT chr2R:23744775-23744895 92 7.35e-04 CTTCGTTTCG TTATTTAT TTAATACATT chr3L:8604427-8604547 24 7.35e-04 TATTCAAACA TTATTTAT TATATCAGTT chr2R:14077553-14077673 62 7.35e-04 GGGAAAATCA ATATTTAC ATAGACACAA chr3R:16069406-16069526 107 7.35e-04 ACGCATTAAC ATATTTAC ACGCAt chr3R:29757318-29757438 27 7.35e-04 TTGGGCGTTC ATATTTAC GCACTTTGAG chrX:8837321-8837441 20 7.35e-04 AGTTAACATT TTATTTAT TTTTGGAAGA chrX:18238016-18238136 94 7.35e-04 AGGTGTGACA ATATTTAC AATGTCTTGT chr2L:1738161-1738281 111 7.35e-04 ATTTAAAATT ATGTTTAT GT chr2L:20889993-20890113 51 7.35e-04 AATGAGTAAC ATGTTTAT AAGGACCATC chr3L:17047874-17047994 14 7.35e-04 TATGGAATAT TTATTTAT AAATGCATAT chrX:7227491-7227611 1 7.35e-04 . ATATTTAC ATATGTCCGT chr2R:10485630-10485750 46 7.35e-04 GGTGTTTTCC ATGTTTAT TTTCCTATTC chr2L:9614131-9614251 111 7.35e-04 CAATATTAGT TTATTTAT AT chrX:13645211-13645331 109 7.35e-04 TGTGCCAACA ATATTTAC CAAA chr2L:19370244-19370364 90 7.35e-04 TGATAAGAGC ATGTTTAT AAATATTTTC chr3L:3380545-3380665 18 7.94e-04 CTCTTGCAAA CTATTTAC TGTCTTTACC chr3R:30767255-30767375 40 7.94e-04 GCTTGCCACT CTGTTTAT CGAGTGTAAA chr3L:4272321-4272441 86 7.94e-04 ATTCATTTGC CTGTTTAT TTGGGACCTG chr3L:10858591-10858711 16 8.23e-04 GTTGTCCCAT GTATTTGT TGATGCCATG chr3R:14386257-14386377 41 8.23e-04 TGATCAAATG GTATTTGT ATTCAAAGTA chr3L:1549376-1549496 66 9.60e-04 GACGTATTGT ATATTTAT TATGAACAAT chr2L:14235142-14235262 45 9.60e-04 TAAATATAAT ATATTTAT AAAAACTACT chr3R:11993438-11993558 46 9.60e-04 atgtatgtgt gtatttac atatgtatAT chr2R:22666780-22666900 56 9.60e-04 TGTCAATTGC ATATTTAT TTAGATATGT chr3L:1690836-1690956 44 9.60e-04 AGCTGTTCAC ATATTTAT ATAGCTGGCT chr3R:10449111-10449231 29 1.01e-03 TTGACTAAAT CTATTTAT TAACCTTTGT chr3R:8155907-8156027 104 1.01e-03 CTCTACACTG CTATTTAT TGCGCAGCT chr2L:19796169-19796289 3 1.07e-03 tt gtatttAT ACAGGAAGTA chr3L:7996473-7996593 44 1.12e-03 CAGCTGTTAA TTGTGTGT GATCTTGAGC chr3L:351145-351265 82 1.12e-03 ACGTAGTGAA TTGTGTGT TGACCATAAA chr3R:19182993-19183113 95 1.12e-03 GTTTGTTTGG CTGTGTGC GAAGTTGGCT chrX:12923466-12923586 18 1.22e-03 CTTTGCCAGA GTGTGTGC GTTATTTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8308795-8308915 1.8e-05 19_[+2]_93 chr2L:7043198-7043318 1.8e-05 34_[+2]_78 chr2R:19413340-19413460 1.8e-05 46_[+2]_66 chr2L:9775338-9775458 1.8e-05 104_[+2]_8 chrX:4458027-4458147 1.8e-05 105_[+2]_7 chr2L:16520042-16520162 1.8e-05 67_[+2]_45 chrX:1387357-1387477 1.8e-05 42_[+2]_70 chr2R:13305617-13305737 1.8e-05 8_[+2]_104 chr2R:12741224-12741344 1.8e-05 62_[+2]_50 chr2R:24323418-24323538 1.8e-05 49_[+2]_63 chrX:19839260-19839380 1.8e-05 62_[+2]_50 chrX:17582816-17582936 9.5e-05 35_[+2]_77 chrX:20506055-20506175 9.5e-05 46_[+2]_66 chr2L:3851455-3851575 9.5e-05 111_[+2]_1 chr3L:17656816-17656936 9.5e-05 102_[+2]_10 chr3L:14354647-14354767 9.5e-05 41_[+2]_71 chr3L:16056354-16056474 9.5e-05 49_[+2]_63 chr3L:614860-614980 9.5e-05 62_[+2]_50 chr2R:22540015-22540135 9.5e-05 47_[+2]_65 chr3R:19467595-19467715 9.5e-05 68_[+2]_44 chr3R:27254138-27254258 9.5e-05 96_[+2]_16 chr3L:8925812-8925932 9.5e-05 64_[+2]_48 chr2R:18877760-18877880 9.5e-05 40_[+2]_72 chr2R:16162558-16162678 9.5e-05 104_[+2]_8 chr3L:16429580-16429700 9.5e-05 52_[+2]_60 chr3L:4615202-4615322 9.5e-05 29_[+2]_83 chr2R:11792793-11792913 0.00011 39_[+2]_73 chr3R:23947149-23947269 0.00011 45_[+2]_67 chr3R:23445370-23445490 0.00011 9_[+2]_103 chr2L:1094812-1094932 0.00011 62_[+2]_50 chr3R:21865176-21865296 0.00014 66_[+2]_46 chr3L:19073293-19073413 0.00014 66_[+2]_46 chr3R:6182645-6182765 0.00014 86_[+2]_26 chr2L:2494633-2494753 0.00014 61_[+2]_51 chrX:3967764-3967884 0.00014 71_[+2]_41 chr2L:8423973-8424093 0.00014 13_[+2]_99 chr3L:11003045-11003165 0.00014 13_[+2]_99 chr3R:28556515-28556635 0.00025 104_[+2]_8 chr3R:27138132-27138252 0.00025 16_[+2]_96 chr3R:24293304-24293424 0.00025 75_[+2]_37 chr3R:5323737-5323857 0.00025 20_[+2]_92 chrX:22837526-22837646 0.00025 19_[+2]_93 chr3L:12350457-12350577 0.00025 60_[+2]_52 chr3R:17828788-17828908 0.00025 60_[+2]_52 chr3L:16670311-16670431 0.00025 78_[+2]_34 chrX:2462127-2462247 0.00025 27_[+2]_85 chr3L:16640599-16640719 0.00025 61_[+2]_51 chr2L:2749197-2749317 0.00025 37_[+2]_75 chr3L:5785372-5785492 0.00025 47_[+2]_65 chr3L:6140296-6140416 0.00025 62_[+2]_50 chrX:21334660-21334780 0.00025 104_[+2]_8 chr3L:8379297-8379417 0.00025 68_[+2]_44 chrX:3358995-3359115 0.00025 7_[+2]_105 chr2L:5303767-5303887 0.00025 59_[+2]_53 chr2R:13532037-13532157 0.00025 63_[+2]_49 chr2L:10497547-10497667 0.00025 107_[+2]_5 chr3R:10150704-10150824 0.00025 41_[+2]_71 chr2R:12729332-12729452 0.00025 49_[+2]_63 chr3R:24298530-24298650 0.00029 54_[+2]_58 chr2R:22657109-22657229 0.00029 31_[+2]_81 chrX:11823213-11823333 0.00029 59_[+2]_53 chr3R:26908894-26909014 0.00029 63_[+2]_49 chr3R:19014877-19014997 0.00029 7_[+2]_105 chr3L:19847085-19847205 0.00029 68_[+2]_44 chr3R:28590634-28590754 0.00041 91_[+2]_21 chr2L:1123542-1123662 0.00041 2_[+2]_110 chr2R:21282338-21282458 0.00041 19_[+2]_93 chr3R:18438353-18438473 0.00041 10_[+2]_102 chr3R:26539262-26539382 0.00041 18_[+2]_94 chr3L:8058385-8058505 0.00041 19_[+2]_93 chr2R:13960913-13961033 0.00041 93_[+2]_19 chrX:362270-362390 0.00041 1_[+2]_111 chr2L:18496941-18497061 0.00041 8_[+2]_104 chr3L:13232950-13233070 0.00043 55_[+2]_57 chrX:3136853-3136973 0.00052 35_[+2]_77 chrX:13764575-13764695 0.00052 28_[+2]_84 chr3R:13549723-13549843 0.00052 43_[+2]_69 chr2L:12465842-12465962 0.00052 33_[+2]_79 chr3L:14166444-14166564 0.00052 78_[+2]_34 chr3R:15677862-15677982 0.00052 89_[+2]_23 chr3R:18785941-18786061 0.00055 54_[+2]_58 chrX:17473437-17473557 0.00073 24_[+2]_88 chr2L:19121099-19121219 0.00073 59_[+2]_53 chr3R:11617515-11617635 0.00073 48_[+2]_64 chr3R:15983736-15983856 0.00073 16_[+2]_96 chr2R:23744775-23744895 0.00073 91_[+2]_21 chr3L:8604427-8604547 0.00073 23_[+2]_89 chr2R:14077553-14077673 0.00073 61_[+2]_51 chr3R:16069406-16069526 0.00073 106_[+2]_6 chr3R:29757318-29757438 0.00073 26_[+2]_86 chrX:8837321-8837441 0.00073 19_[+2]_93 chrX:18238016-18238136 0.00073 93_[+2]_19 chr2L:1738161-1738281 0.00073 110_[+2]_2 chr2L:20889993-20890113 0.00073 50_[+2]_62 chr3L:17047874-17047994 0.00073 13_[+2]_99 chrX:7227491-7227611 0.00073 [+2]_112 chr2R:10485630-10485750 0.00073 45_[+2]_67 chr2L:9614131-9614251 0.00073 110_[+2]_2 chrX:13645211-13645331 0.00073 108_[+2]_4 chr2L:19370244-19370364 0.00073 89_[+2]_23 chr3L:3380545-3380665 0.00079 17_[+2]_95 chr3R:30767255-30767375 0.00079 39_[+2]_73 chr3L:4272321-4272441 0.00079 85_[+2]_27 chr3L:10858591-10858711 0.00082 15_[+2]_97 chr3R:14386257-14386377 0.00082 40_[+2]_72 chr3L:1549376-1549496 0.00096 65_[+2]_47 chr2L:14235142-14235262 0.00096 44_[+2]_68 chr3R:11993438-11993558 0.00096 45_[+2]_67 chr2R:22666780-22666900 0.00096 55_[+2]_57 chr3L:1690836-1690956 0.00096 43_[+2]_69 chr3R:10449111-10449231 0.001 28_[+2]_84 chr3R:8155907-8156027 0.001 103_[+2]_9 chr2L:19796169-19796289 0.0011 2_[+2]_110 chr3L:7996473-7996593 0.0011 43_[+2]_69 chr3L:351145-351265 0.0011 81_[+2]_31 chr3R:19182993-19183113 0.0011 94_[+2]_18 chrX:12923466-12923586 0.0012 17_[+2]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTRTTTRY width=8 seqs=117 chr3R:8308795-8308915 ( 20) TTGTTTGC 1 chr2L:7043198-7043318 ( 35) TTGTTTGC 1 chr2R:19413340-19413460 ( 47) TTGTTTGC 1 chr2L:9775338-9775458 ( 105) TTGTTTGC 1 chrX:4458027-4458147 ( 106) TTGTTTGC 1 chr2L:16520042-16520162 ( 68) TTGTTTGC 1 chrX:1387357-1387477 ( 43) TTGTTTGC 1 chr2R:13305617-13305737 ( 9) TTGTTTGC 1 chr2R:12741224-12741344 ( 63) TTGTTTGC 1 chr2R:24323418-24323538 ( 50) TTGTTTGC 1 chrX:19839260-19839380 ( 63) TTGTTTGC 1 chrX:17582816-17582936 ( 36) TTATTTGC 1 chrX:20506055-20506175 ( 47) ATGTTTGC 1 chr2L:3851455-3851575 ( 112) TTATTTGC 1 chr3L:17656816-17656936 ( 103) TTATTTGC 1 chr3L:14354647-14354767 ( 42) TTGTTTGT 1 chr3L:16056354-16056474 ( 50) ATGTTTGC 1 chr3L:614860-614980 ( 63) TTGTTTGT 1 chr2R:22540015-22540135 ( 48) ATGTTTGC 1 chr3R:19467595-19467715 ( 69) TTGTTTGT 1 chr3R:27254138-27254258 ( 97) TTATTTGC 1 chr3L:8925812-8925932 ( 65) TTGTTTGT 1 chr2R:18877760-18877880 ( 41) TTATTTGC 1 chr2R:16162558-16162678 ( 105) TTATTTGC 1 chr3L:16429580-16429700 ( 53) TTGTTTGT 1 chr3L:4615202-4615322 ( 30) TTGTTTGT 1 chr2R:11792793-11792913 ( 40) CTGTTTGC 1 chr3R:23947149-23947269 ( 46) CTGTTTGC 1 chr3R:23445370-23445490 ( 10) CTGTTTGC 1 chr2L:1094812-1094932 ( 63) CTGTTTGC 1 chr3R:21865176-21865296 ( 67) TTGTTTAC 1 chr3L:19073293-19073413 ( 67) TTGTTTAC 1 chr3R:6182645-6182765 ( 87) TTGTTTAC 1 chr2L:2494633-2494753 ( 62) TTGTTTAC 1 chrX:3967764-3967884 ( 72) TTGTTTAC 1 chr2L:8423973-8424093 ( 14) TTGTTTAC 1 chr3L:11003045-11003165 ( 14) TTGTTTAC 1 chr3R:28556515-28556635 ( 105) GTGTTTGC 1 chr3R:27138132-27138252 ( 17) TTATTTGT 1 chr3R:24293304-24293424 ( 76) ATGTTTGT 1 chr3R:5323737-5323857 ( 21) TTATTTGT 1 chrX:22837526-22837646 ( 20) GTGTTTGC 1 chr3L:12350457-12350577 ( 61) ATATTTGC 1 chr3R:17828788-17828908 ( 61) ATGTTTGT 1 chr3L:16670311-16670431 ( 79) TTATTTGT 1 chrX:2462127-2462247 ( 28) TTATTTGT 1 chr3L:16640599-16640719 ( 62) ATGTTTGT 1 chr2L:2749197-2749317 ( 38) ATGTTTGT 1 chr3L:5785372-5785492 ( 48) ATATTTGC 1 chr3L:6140296-6140416 ( 63) GTGTTTGC 1 chrX:21334660-21334780 ( 105) TTATTTGT 1 chr3L:8379297-8379417 ( 69) ATGTTTGT 1 chrX:3358995-3359115 ( 8) GTGTTTGC 1 chr2L:5303767-5303887 ( 60) ATATTTGC 1 chr2R:13532037-13532157 ( 64) TTATTTGT 1 chr2L:10497547-10497667 ( 108) ATATTTGC 1 chr3R:10150704-10150824 ( 42) TTATTTGT 1 chr2R:12729332-12729452 ( 50) ATATTTGC 1 chr3R:24298530-24298650 ( 55) CTATTTGC 1 chr2R:22657109-22657229 ( 32) CTGTTTGT 1 chrX:11823213-11823333 ( 60) CTATTTGC 1 chr3R:26908894-26909014 ( 64) CTGTTTGT 1 chr3R:19014877-19014997 ( 8) CTGTTTGT 1 chr3L:19847085-19847205 ( 69) CTGTTTGT 1 chr3R:28590634-28590754 ( 92) TTATTTAC 1 chr2L:1123542-1123662 ( 3) ATGTTTAC 1 chr2R:21282338-21282458 ( 20) ATGTTTAC 1 chr3R:18438353-18438473 ( 11) TTATTTAC 1 chr3R:26539262-26539382 ( 19) TTGTTTAT 1 chr3L:8058385-8058505 ( 20) TTATTTAC 1 chr2R:13960913-13961033 ( 94) TTATTTAC 1 chrX:362270-362390 ( 2) TTATTTAC 1 chr2L:18496941-18497061 ( 9) TTGTTTAT 1 chr3L:13232950-13233070 ( 56) CTGTTTAC 1 chrX:3136853-3136973 ( 36) GTATTTGC 1 chrX:13764575-13764695 ( 29) ATATTTGT 1 chr3R:13549723-13549843 ( 44) ATATTTGT 1 chr2L:12465842-12465962 ( 34) ATATTTGT 1 chr3L:14166444-14166564 ( 79) GTGTTTGT 1 chr3R:15677862-15677982 ( 90) GTGTTTGT 1 chr3R:18785941-18786061 ( 55) CTATTTGT 1 chrX:17473437-17473557 ( 25) TTATTTAT 1 chr2L:19121099-19121219 ( 60) ATGTTTAT 1 chr3R:11617515-11617635 ( 49) TTATTTAT 1 chr3R:15983736-15983856 ( 17) ATATTTAC 1 chr2R:23744775-23744895 ( 92) TTATTTAT 1 chr3L:8604427-8604547 ( 24) TTATTTAT 1 chr2R:14077553-14077673 ( 62) ATATTTAC 1 chr3R:16069406-16069526 ( 107) ATATTTAC 1 chr3R:29757318-29757438 ( 27) ATATTTAC 1 chrX:8837321-8837441 ( 20) TTATTTAT 1 chrX:18238016-18238136 ( 94) ATATTTAC 1 chr2L:1738161-1738281 ( 111) ATGTTTAT 1 chr2L:20889993-20890113 ( 51) ATGTTTAT 1 chr3L:17047874-17047994 ( 14) TTATTTAT 1 chrX:7227491-7227611 ( 1) ATATTTAC 1 chr2R:10485630-10485750 ( 46) ATGTTTAT 1 chr2L:9614131-9614251 ( 111) TTATTTAT 1 chrX:13645211-13645331 ( 109) ATATTTAC 1 chr2L:19370244-19370364 ( 90) ATGTTTAT 1 chr3L:3380545-3380665 ( 18) CTATTTAC 1 chr3R:30767255-30767375 ( 40) CTGTTTAT 1 chr3L:4272321-4272441 ( 86) CTGTTTAT 1 chr3L:10858591-10858711 ( 16) GTATTTGT 1 chr3R:14386257-14386377 ( 41) GTATTTGT 1 chr3L:1549376-1549496 ( 66) ATATTTAT 1 chr2L:14235142-14235262 ( 45) ATATTTAT 1 chr3R:11993438-11993558 ( 46) GTATTTAC 1 chr2R:22666780-22666900 ( 56) ATATTTAT 1 chr3L:1690836-1690956 ( 44) ATATTTAT 1 chr3R:10449111-10449231 ( 29) CTATTTAT 1 chr3R:8155907-8156027 ( 104) CTATTTAT 1 chr2L:19796169-19796289 ( 3) GTATTTAT 1 chr3L:7996473-7996593 ( 44) TTGTGTGT 1 chr3L:351145-351265 ( 82) TTGTGTGT 1 chr3R:19182993-19183113 ( 95) CTGTGTGC 1 chrX:12923466-12923586 ( 18) GTGTGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.16875 E= 4.8e-018 -10 -31 -93 59 -1351 -1351 -1351 173 59 -1351 144 -1351 -1351 -1351 -1351 173 -1351 -1351 -251 168 -1351 -1351 -1351 173 36 -1351 161 -1351 -1351 148 -1351 64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 117 E= 4.8e-018 0.290598 0.153846 0.102564 0.452991 0.000000 0.000000 0.000000 1.000000 0.470085 0.000000 0.529915 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.034188 0.965812 0.000000 0.000000 0.000000 1.000000 0.401709 0.000000 0.598291 0.000000 0.000000 0.529915 0.000000 0.470085 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-2 regular expression -------------------------------------------------------------------------------- [TA]T[GA]TTT[GA][CT] -------------------------------------------------------------------------------- Time 14.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGGGG MEME-3 width = 8 sites = 14 llr = 149 E-value = 1.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C 21:8:::: probability G 85a2aaaa matrix T :1:::::: bits 2.4 * **** 2.2 * **** 1.9 * **** 1.7 * ****** Relative 1.4 * ****** Entropy 1.2 * ****** (15.4 bits) 1.0 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel GGGCGGGG consensus CA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21629861-21629981 107 2.05e-06 GGTTTTCAGT GGGCGGGG AGGGGT chrX:10115661-10115781 7 2.05e-06 GGCAGG GGGCGGGG ATTTTCAGTG chrX:362270-362390 42 2.05e-06 TCCCAGTCTC GGGCGGGG CATTTTGTCA chrX:1992119-1992239 52 2.05e-06 GGAGCCAGTG GGGCGGGG GGCGGTGTCG chr2R:16820454-16820574 58 2.05e-06 acgggcaagg gggcgggg gggatgtgtg chr2R:14494801-14494921 25 6.06e-06 AACTACTGTG CGGCGGGG TTGTTGACTG chr2L:9614131-9614251 2 6.06e-06 T GCGCGGGG TGAAGAACCG chr2L:19370244-19370364 18 6.06e-06 AAAAGGGCGG CGGCGGGG TGACGACAAC chr3R:16069406-16069526 25 1.14e-05 ttgcggagcg gagcgggg gcggtacagc chr3L:1690836-1690956 13 1.46e-05 CTCCACTCGA GTGCGGGG GCAAGGTGCT chr3L:351145-351265 21 1.66e-05 CCATCCAATA CCGCGGGG GATATAGAAA chr2R:22657109-22657229 1 2.72e-05 . GAGGGGGG AGTTAGACAA chr3R:8155907-8156027 33 2.72e-05 TTTCGGCGAA GAGGGGGG TTAACGAGTG chr2L:18717570-18717690 22 3.36e-05 CAAGGGGGTG GTGGGGGG AAGCCCATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21629861-21629981 2e-06 106_[+3]_6 chrX:10115661-10115781 2e-06 6_[+3]_106 chrX:362270-362390 2e-06 41_[+3]_71 chrX:1992119-1992239 2e-06 51_[+3]_61 chr2R:16820454-16820574 2e-06 57_[+3]_55 chr2R:14494801-14494921 6.1e-06 24_[+3]_88 chr2L:9614131-9614251 6.1e-06 1_[+3]_111 chr2L:19370244-19370364 6.1e-06 17_[+3]_95 chr3R:16069406-16069526 1.1e-05 24_[+3]_88 chr3L:1690836-1690956 1.5e-05 12_[+3]_100 chr3L:351145-351265 1.7e-05 20_[+3]_92 chr2R:22657109-22657229 2.7e-05 [+3]_112 chr3R:8155907-8156027 2.7e-05 32_[+3]_80 chr2L:18717570-18717690 3.4e-05 21_[+3]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGGGG width=8 seqs=14 chr3R:21629861-21629981 ( 107) GGGCGGGG 1 chrX:10115661-10115781 ( 7) GGGCGGGG 1 chrX:362270-362390 ( 42) GGGCGGGG 1 chrX:1992119-1992239 ( 52) GGGCGGGG 1 chr2R:16820454-16820574 ( 58) GGGCGGGG 1 chr2R:14494801-14494921 ( 25) CGGCGGGG 1 chr2L:9614131-9614251 ( 2) GCGCGGGG 1 chr2L:19370244-19370364 ( 18) CGGCGGGG 1 chr3R:16069406-16069526 ( 25) GAGCGGGG 1 chr3L:1690836-1690956 ( 13) GTGCGGGG 1 chr3L:351145-351265 ( 21) CCGCGGGG 1 chr2R:22657109-22657229 ( 1) GAGGGGGG 1 chr3R:8155907-8156027 ( 33) GAGGGGGG 1 chr2L:18717570-18717690 ( 22) GTGGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 1.8e+000 -1045 17 201 -1045 -54 -42 135 -108 -1045 -1045 235 -1045 -1045 204 13 -1045 -1045 -1045 235 -1045 -1045 -1045 235 -1045 -1045 -1045 235 -1045 -1045 -1045 235 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.8e+000 0.000000 0.214286 0.785714 0.000000 0.214286 0.142857 0.500000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGGG MEME-3 regular expression -------------------------------------------------------------------------------- [GC][GA]G[CG]GGGG -------------------------------------------------------------------------------- Time 20.05 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCCCCC MEME-4 width = 8 sites = 3 llr = 38 E-value = 3.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aaaaaa probability G :::::::: matrix T :a:::::: bits 2.4 * ****** 2.2 * ****** 1.9 * ****** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16670311-16670431 62 2.80e-06 CCCCAACTGA CTCCCCCC ACTTGGGTGT chrX:2462127-2462247 105 2.80e-06 AACAGCCCCC CTCCCCCC CCTCCCCA chr2L:1094812-1094932 79 2.80e-06 GCCCCCCCTC CTCCCCCC TCCTCCCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16670311-16670431 2.8e-06 61_[+4]_51 chrX:2462127-2462247 2.8e-06 104_[+4]_8 chr2L:1094812-1094932 2.8e-06 78_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCCCCC width=8 seqs=3 chr3L:16670311-16670431 ( 62) CTCCCCCC 1 chrX:2462127-2462247 ( 105) CTCCCCCC 1 chr2L:1094812-1094932 ( 79) CTCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 3.7e+003 -823 239 -823 -823 -823 -823 -823 172 -823 239 -823 -823 -823 239 -823 -823 -823 239 -823 -823 -823 239 -823 -823 -823 239 -823 -823 -823 239 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.7e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CTCCCCCC -------------------------------------------------------------------------------- Time 25.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCTGC MEME-5 width = 8 sites = 13 llr = 135 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:2::2:: pos.-specific C :a::a::9 probability G 9::a:2a1 matrix T ::8::7:: bits 2.4 * ** * 2.2 * ** * 1.9 ** ** ** 1.7 ** ** ** Relative 1.4 ** ** ** Entropy 1.2 ** ** ** (15.0 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:4380316-4380436 6 4.71e-06 ctgct gctgctgc cgctgAATCT chr2R:14073595-14073715 6 4.71e-06 ctgtc gctgctgc tggtgcattt chr2L:18496941-18497061 28 4.71e-06 TGTGTTTTAA GCTGCTGC TAGGAACGAC chr3L:11003045-11003165 73 4.71e-06 CCCGCCTCCA GCTGCTGC GTCAATATTG chr3R:21598096-21598216 105 4.71e-06 TTCCCTCCCT GCTGCTGC TCCCTCCC chr2R:12729332-12729452 93 7.75e-06 TGTGTATATG GCTGCGGC TTTTAGCTTT chr3L:5926063-5926183 10 1.26e-05 CTTTTAGGT GCAGCTGC ATATTCAAAT chr2R:11706361-11706481 13 1.26e-05 TTGGACCACA GCAGCTGC CGATGCTTTG chr3R:8308795-8308915 111 1.75e-05 TTATTGTATC GCTGCAGC AA chr3R:6665428-6665548 97 1.75e-05 CACCACAGTC GCTGCAGC AGAATTTAGT chrX:1992119-1992239 110 2.06e-05 TGCGACGCcg gcagcggc ata chr2R:24746086-24746206 102 2.54e-05 CAGGTCGTGA GCTGCTGG AGCGAGACAC chr3L:3080706-3080826 94 3.80e-05 CATTGTTCTT ACTGCTGC GCGTGTGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4380316-4380436 4.7e-06 5_[+5]_107 chr2R:14073595-14073715 4.7e-06 5_[+5]_107 chr2L:18496941-18497061 4.7e-06 27_[+5]_85 chr3L:11003045-11003165 4.7e-06 72_[+5]_40 chr3R:21598096-21598216 4.7e-06 104_[+5]_8 chr2R:12729332-12729452 7.8e-06 92_[+5]_20 chr3L:5926063-5926183 1.3e-05 9_[+5]_103 chr2R:11706361-11706481 1.3e-05 12_[+5]_100 chr3R:8308795-8308915 1.7e-05 110_[+5]_2 chr3R:6665428-6665548 1.7e-05 96_[+5]_16 chrX:1992119-1992239 2.1e-05 109_[+5]_3 chr2R:24746086-24746206 2.5e-05 101_[+5]_11 chr3L:3080706-3080826 3.8e-05 93_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCTGC width=8 seqs=13 chr3L:4380316-4380436 ( 6) GCTGCTGC 1 chr2R:14073595-14073715 ( 6) GCTGCTGC 1 chr2L:18496941-18497061 ( 28) GCTGCTGC 1 chr3L:11003045-11003165 ( 73) GCTGCTGC 1 chr3R:21598096-21598216 ( 105) GCTGCTGC 1 chr2R:12729332-12729452 ( 93) GCTGCGGC 1 chr3L:5926063-5926183 ( 10) GCAGCTGC 1 chr2R:11706361-11706481 ( 13) GCAGCTGC 1 chr3R:8308795-8308915 ( 111) GCTGCAGC 1 chr3R:6665428-6665548 ( 97) GCTGCAGC 1 chrX:1992119-1992239 ( 110) GCAGCGGC 1 chr2R:24746086-24746206 ( 102) GCTGCTGG 1 chr3L:3080706-3080826 ( 94) ACTGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 1.8e+002 -202 -1035 224 -1035 -1035 239 -1035 -1035 -44 -1035 -1035 135 -1035 -1035 235 -1035 -1035 239 -1035 -1035 -102 -1035 -34 120 -1035 -1035 235 -1035 -1035 228 -134 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.8e+002 0.076923 0.000000 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.230769 0.000000 0.000000 0.769231 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.153846 0.000000 0.153846 0.692308 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.076923 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGC MEME-5 regular expression -------------------------------------------------------------------------------- GC[TA]GCTGC -------------------------------------------------------------------------------- Time 31.71 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19182993-19183113 6.23e-01 120 chr2L:19370244-19370364 2.28e-04 17_[+3(6.06e-06)]_95 chr3L:4615202-4615322 2.07e-03 25_[+2(9.51e-05)]_40_[+1(2.10e-05)]_\ 39 chr3L:16429580-16429700 2.51e-03 52_[+2(9.51e-05)]_25_[+1(2.10e-05)]_\ 27 chrX:13645211-13645331 2.00e-01 120 chrX:19839260-19839380 7.33e-02 62_[+2(1.82e-05)]_50 chr2R:6157991-6158111 2.90e-01 120 chr3R:24301598-24301718 5.40e-01 120 chr2R:7167945-7168065 1.94e-01 120 chr2R:7756393-7756513 1.20e-01 120 chr2R:11706361-11706481 4.17e-03 12_[+5(1.26e-05)]_53_[+1(8.78e-05)]_\ 39 chr2L:20327526-20327646 2.91e-02 94_[+1(3.42e-05)]_18 chr2R:24323418-24323538 1.36e-02 41_[+2(9.51e-05)]_[+2(1.82e-05)]_63 chr2L:5338766-5338886 6.98e-01 120 chr2R:12729332-12729452 7.94e-03 92_[+5(7.75e-06)]_20 chr2R:16162558-16162678 7.10e-02 104_[+2(9.51e-05)]_8 chr2R:16820454-16820574 1.27e-02 26_[+3(5.50e-05)]_23_[+3(2.05e-06)]_\ 55 chr3R:10150704-10150824 3.45e-02 120 chr2L:9614131-9614251 3.24e-03 1_[+3(6.06e-06)]_111 chr2R:10485630-10485750 8.64e-02 120 chr2R:12741224-12741344 4.36e-03 12_[+1(3.42e-05)]_42_[+2(1.82e-05)]_\ 50 chr3R:15677862-15677982 3.93e-03 16_[+5(7.15e-05)]_96 chr3R:6665428-6665548 2.30e-03 96_[+5(1.75e-05)]_16 chr2R:18877760-18877880 1.30e-02 13_[+1(3.42e-05)]_19_[+2(9.51e-05)]_\ 72 chr3R:21834392-21834512 9.89e-01 120 chr2L:10497547-10497667 1.12e-01 120 chr3L:8925812-8925932 3.39e-01 64_[+2(9.51e-05)]_48 chr3L:11491922-11492042 5.94e-03 120 chrX:15497829-15497949 1.99e-01 60_[+1(8.78e-05)]_52 chr3R:27254138-27254258 3.81e-02 96_[+2(9.51e-05)]_16 chr2R:13532037-13532157 6.99e-02 120 chr3L:4272321-4272441 4.48e-01 120 chr3R:21598096-21598216 3.84e-03 104_[+5(4.71e-06)]_8 chr3L:11003045-11003165 1.47e-04 52_[+4(9.23e-05)]_12_[+5(4.71e-06)]_\ 40 chr3R:19467595-19467715 1.64e-01 68_[+2(9.51e-05)]_44 chr2L:18496941-18497061 1.80e-03 27_[+5(4.71e-06)]_85 chr3L:19670606-19670726 1.88e-01 120 chr3R:6674721-6674841 7.84e-01 120 chr2R:22540015-22540135 1.95e-02 47_[+2(9.51e-05)]_65 chr2L:1094812-1094932 1.86e-04 78_[+4(2.80e-06)]_2_[+4(9.23e-05)]_\ 24 chr2L:14432492-14432612 3.69e-01 120 chr2L:18717570-18717690 7.60e-02 21_[+3(3.36e-05)]_91 chrX:12923466-12923586 9.40e-02 120 chrX:8413110-8413230 6.25e-02 120 chr3R:18785941-18786061 5.85e-01 120 chr3L:754674-754794 2.20e-01 120 chr3L:614860-614980 2.48e-01 62_[+2(9.51e-05)]_50 chr2L:12509607-12509727 1.90e-01 66_[+1(8.78e-05)]_46 chrX:7227491-7227611 1.79e-01 120 chr3R:8980246-8980366 3.45e-01 120 chr3R:26900111-26900231 9.30e-01 120 chr3R:11338444-11338564 8.26e-01 120 chr2R:22199998-22200118 1.02e-01 81_[+1(8.78e-05)]_31 chr3L:16056354-16056474 1.68e-02 49_[+2(9.51e-05)]_63 chr2L:8423973-8424093 3.76e-02 120 chr2L:5303767-5303887 1.14e-03 17_[+1(2.10e-05)]_95 chr2R:24746086-24746206 2.34e-03 42_[+1(2.10e-05)]_51_[+5(2.54e-05)]_\ 11 chr3L:11151096-11151216 5.53e-01 120 chr3L:19847085-19847205 4.06e-01 120 chr3L:1690836-1690956 1.07e-04 12_[+3(1.46e-05)]_53_[+1(3.42e-05)]_\ 39 chr2R:13305617-13305737 1.38e-01 8_[+2(1.82e-05)]_42_[+2(9.51e-05)]_\ 41_[+2(9.51e-05)]_5 chr3L:17937429-17937549 1.43e-01 120 chr2L:7266092-7266212 7.80e-01 120 chr3R:7779770-7779890 9.48e-01 120 chr3L:18198259-18198379 4.71e-01 120 chrX:3358995-3359115 2.19e-01 120 chr3L:8379297-8379417 3.83e-04 78_[+1(3.42e-05)]_3_[+3(9.73e-05)]_\ 23 chr3R:25524346-25524466 2.82e-01 120 chr3L:17047874-17047994 2.98e-01 120 chr3L:4400048-4400168 9.92e-01 120 chr3L:10391064-10391184 9.44e-01 120 chr2L:3576191-3576311 1.81e-01 120 chr3L:721176-721296 8.02e-01 120 chrX:1992119-1992239 1.02e-03 51_[+3(2.05e-06)]_50_[+5(2.06e-05)]_\ 3 chr2R:6503174-6503294 5.36e-02 120 chr3R:10521278-10521398 6.32e-01 120 chr2R:19725883-19726003 2.56e-01 120 chr2L:20889993-20890113 6.01e-01 120 chr3L:351145-351265 5.32e-04 20_[+3(1.66e-05)]_92 chr3L:14194281-14194401 2.62e-01 120 chr3R:21157286-21157406 9.55e-01 120 chr2R:16091935-16092055 9.15e-01 120 chr3R:8155907-8156027 2.31e-04 32_[+3(2.72e-05)]_47_[+4(9.23e-05)]_\ 25 chrX:1387357-1387477 1.50e-03 42_[+2(1.82e-05)]_70 chrX:362270-362390 2.75e-04 41_[+3(2.05e-06)]_71 chrX:21334660-21334780 5.94e-01 120 chrX:10115661-10115781 6.78e-06 6_[+3(2.05e-06)]_13_[+4(9.27e-06)]_\ 85 chr3R:6229061-6229181 9.62e-01 120 chr3L:6140296-6140416 1.18e-02 120 chr2R:24897678-24897798 6.14e-01 120 chr2L:1738161-1738281 3.08e-01 120 chrX:18238016-18238136 3.67e-01 120 chr3L:5785372-5785492 3.94e-03 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3.50e-03 104_[+4(2.80e-06)]_8 chr2R:23180956-23181076 2.41e-02 59_[+1(8.78e-05)]_53 chr2R:9266558-9266678 5.39e-01 120 chr3L:8058385-8058505 2.66e-01 120 chr2L:16520042-16520162 1.86e-01 67_[+2(1.82e-05)]_45 chr3R:17048961-17049081 8.12e-01 120 chr2R:15354569-15354689 9.64e-01 120 chrX:15591779-15591899 8.91e-02 120 chr3L:3755807-3755927 3.07e-02 35_[+1(3.42e-05)]_77 chr3R:21271336-21271456 3.31e-01 120 chr2R:14969666-14969786 7.11e-01 120 chr2L:2494633-2494753 8.93e-03 80_[+1(8.78e-05)]_32 chr3R:6182645-6182765 9.16e-02 120 chrX:4458027-4458147 1.33e-01 105_[+2(1.82e-05)]_7 chr2R:14494801-14494921 1.34e-03 24_[+3(6.06e-06)]_88 chr3L:19073293-19073413 9.23e-03 120 chr3R:23445370-23445490 2.09e-02 54_[+1(3.42e-05)]_58 chr3R:14386257-14386377 8.06e-01 120 chr2L:470042-470162 5.52e-01 120 chr3R:9083469-9083589 2.30e-01 120 chr2R:22666780-22666900 8.77e-01 120 chrX:14622353-14622473 9.53e-01 120 chr3R:26539262-26539382 7.10e-04 57_[+5(4.61e-05)]_55 chr2R:21848628-21848748 5.75e-01 120 chr3L:16670311-16670431 1.29e-03 61_[+4(2.80e-06)]_51 chr3L:11336538-11336658 8.92e-01 120 chr2L:9775338-9775458 4.34e-03 104_[+2(1.82e-05)]_8 chr3L:7996473-7996593 3.77e-01 120 chr3R:17955806-17955926 7.19e-01 120 chr3R:17828788-17828908 2.46e-01 120 chr3R:11993438-11993558 1.83e-02 120 chr2L:8543259-8543379 9.19e-01 120 chr2L:14235142-14235262 4.76e-01 120 chr2R:17272620-17272740 6.79e-02 7_[+5(6.37e-05)]_105 chr2L:7151011-7151131 5.52e-01 120 chrX:11823213-11823333 1.31e-01 120 chr2L:12465842-12465962 7.09e-02 120 chr2R:13474945-13475065 6.96e-02 120 chr3R:29757318-29757438 8.10e-02 68_[+1(8.78e-05)]_44 chr2L:6461673-6461793 4.45e-01 120 chr3R:16069406-16069526 1.54e-02 24_[+3(1.14e-05)]_88 chr3R:25885270-25885390 1.88e-01 52_[+1(3.42e-05)]_60 chr3R:5327998-5328118 2.28e-01 120 chr2R:14077553-14077673 1.21e-01 120 chr3L:12350457-12350577 5.36e-02 120 chr2L:3851455-3851575 4.33e-01 111_[+2(9.51e-05)]_1 chrX:22837526-22837646 3.78e-01 120 chr3R:5323737-5323857 2.00e-01 120 chr2L:19884613-19884733 9.61e-01 120 chr3L:8347512-8347632 1.73e-01 120 chrX:20506055-20506175 9.69e-02 46_[+2(9.51e-05)]_66 chr3L:1549376-1549496 4.86e-01 120 chr3L:13232950-13233070 2.32e-01 120 chr3L:4380316-4380436 1.90e-02 2_[+5(4.71e-06)]_110 chr2R:17274110-17274230 2.92e-01 62_[+1(8.78e-05)]_50 chr2L:8080837-8080957 6.88e-01 120 chr3L:14172637-14172757 8.90e-01 120 chr3L:10858591-10858711 1.56e-01 120 chr3R:21594518-21594638 9.74e-01 120 chr3L:21130948-21131068 2.67e-01 120 chr3R:14284533-14284653 2.74e-01 28_[+1(8.78e-05)]_84 chr2R:19413340-19413460 1.02e-05 46_[+2(1.82e-05)]_52_[+1(3.42e-05)]_\ 6 chr3L:8604427-8604547 1.15e-01 120 chr3R:10449111-10449231 8.76e-01 120 chr2R:23744775-23744895 4.15e-01 120 chr3R:24293304-24293424 3.95e-02 120 chr3L:18242262-18242382 1.90e-01 120 chr3L:3449794-3449914 9.21e-01 120 chrX:18517518-18517638 2.63e-01 120 chr3L:11540487-11540607 2.07e-01 120 chr3R:31687934-31688054 9.74e-01 120 chr2R:22387621-22387741 3.60e-01 120 chr2R:22657109-22657229 2.12e-03 [+3(2.72e-05)]_112 chr3L:3080706-3080826 3.24e-03 44_[+1(2.10e-05)]_41_[+5(3.80e-05)]_\ 19 chr2R:14109806-14109926 2.61e-01 120 chr3R:23947149-23947269 3.84e-02 120 chr3R:17655156-17655276 9.59e-01 120 chr2L:856135-856255 5.36e-01 120 chr3R:21865176-21865296 4.81e-02 120 chr2L:3587411-3587531 9.49e-01 120 chr3R:13549723-13549843 7.77e-01 120 chr3R:18438353-18438473 1.55e-02 49_[+1(8.78e-05)]_63 chr3L:21007861-21007981 1.46e-01 120 chr3R:15983736-15983856 6.41e-01 120 chr3R:11617515-11617635 5.86e-01 120 chr2R:11792793-11792913 9.67e-03 11_[+1(2.10e-05)]_101 chr3R:31309415-31309535 1.14e-01 120 chr3L:2468503-2468623 4.83e-01 120 chr3R:4975310-4975430 2.94e-01 120 chr2L:2864703-2864823 1.09e-01 64_[+1(8.78e-05)]_48 chrX:17782111-17782231 8.31e-01 120 chrX:13764575-13764695 5.32e-01 120 chr3L:19191977-19192097 6.57e-02 120 chrX:17582816-17582936 7.02e-02 35_[+2(9.51e-05)]_77 chr2L:19121099-19121219 4.42e-01 120 chr2R:14906345-14906465 1.52e-01 112_[+1(8.78e-05)] chr3R:21629861-21629981 3.81e-03 106_[+3(2.05e-06)]_6 chrX:17473437-17473557 2.74e-02 49_[+1(2.10e-05)]_63 chr2L:117896-118016 3.48e-01 120 chrX:10582185-10582305 4.07e-01 120 chr2R:14971131-14971251 9.47e-01 120 chr3R:16769511-16769631 3.97e-01 120 chr3R:5746774-5746894 3.30e-01 120 chr3R:21349528-21349648 2.03e-01 120 chr3R:27138132-27138252 5.81e-02 120 chr3R:10636152-10636272 9.83e-01 120 chr2R:21282338-21282458 4.75e-02 25_[+5(7.15e-05)]_87 chr3R:10566957-10567077 3.32e-01 26_[+1(8.78e-05)]_86 chr3R:30767255-30767375 4.33e-02 120 chr2L:13082319-13082439 3.74e-02 74_[+1(8.78e-05)]_38 chr2L:1123542-1123662 2.79e-01 120 chr2R:16829052-16829172 8.82e-01 120 chr3R:24298530-24298650 2.15e-01 120 chr3R:21206380-21206500 6.51e-01 120 chr3R:22324852-22324972 9.86e-01 120 chr2L:827689-827809 3.34e-01 120 chr2L:19796169-19796289 7.50e-02 94_[+4(9.23e-05)]_18 chrX:3136853-3136973 9.06e-02 120 chr2R:10238132-10238252 3.55e-02 49_[+1(2.10e-05)]_13_[+1(3.42e-05)]_\ 42 chrX:10744767-10744887 8.66e-02 120 chr2R:14332348-14332468 7.44e-01 120 chr3R:28590634-28590754 3.47e-03 72_[+1(8.78e-05)]_40 chr3R:29265200-29265320 7.09e-01 120 chr2L:7043198-7043318 1.03e-02 34_[+2(1.82e-05)]_78 chr3R:6723884-6724004 7.13e-01 120 chr2L:6283441-6283561 4.73e-02 120 chr3R:28556515-28556635 3.48e-01 120 chr3R:15670634-15670754 7.28e-02 57_[+5(8.49e-05)]_55 chr3L:5926063-5926183 1.56e-01 9_[+5(1.26e-05)]_103 chr3R:8308795-8308915 1.69e-04 19_[+2(1.82e-05)]_2_[+1(8.78e-05)]_\ 73_[+5(1.75e-05)]_2 chr2L:9190444-9190564 2.05e-01 75_[+1(8.78e-05)]_37 chrX:10738949-10739069 3.80e-02 66_[+1(3.42e-05)]_46 chr2R:10555573-10555693 2.85e-01 120 chr3L:3380545-3380665 5.86e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************