******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2678.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:10827491-10827611 1.0000 120 chr3L:11272854-11272974 1.0000 120 chrX:18004355-18004475 1.0000 120 chr3R:24007919-24008039 1.0000 120 chr3R:25754967-25755087 1.0000 120 chrX:12073773-12073893 1.0000 120 chr2L:1619305-1619425 1.0000 120 chr3L:15616591-15616711 1.0000 120 chrX:8206023-8206143 1.0000 120 chr3L:14847550-14847670 1.0000 120 chr3L:15034460-15034580 1.0000 120 chr2R:22508129-22508249 1.0000 120 chr2R:6219986-6220106 1.0000 120 chr3R:22494641-22494761 1.0000 120 chr3L:5630264-5630384 1.0000 120 chr3L:12223134-12223254 1.0000 120 chr3L:14205033-14205153 1.0000 120 chr3L:9466673-9466793 1.0000 120 chrX:7550830-7550950 1.0000 120 chr3L:16146700-16146820 1.0000 120 chr2L:6310026-6310146 1.0000 120 chr2R:10079894-10080014 1.0000 120 chr3L:6807644-6807764 1.0000 120 chr2R:9078063-9078183 1.0000 120 chr2L:1048499-1048619 1.0000 120 chr3R:12562190-12562310 1.0000 120 chr3L:16885227-16885347 1.0000 120 chr2L:17558222-17558342 1.0000 120 chr2L:7778415-7778535 1.0000 120 chr3R:13803975-13804095 1.0000 120 chr2R:7879067-7879187 1.0000 120 chr2R:17918888-17919008 1.0000 120 chr3R:16213942-16214062 1.0000 120 chr3L:5809223-5809343 1.0000 120 chr3L:16657094-16657214 1.0000 120 chr3R:12543061-12543181 1.0000 120 chrX:13208238-13208358 1.0000 120 chrX:13676621-13676741 1.0000 120 chr3L:1193451-1193571 1.0000 120 chr2R:24139216-24139336 1.0000 120 chr3L:15923480-15923600 1.0000 120 chr3R:25855737-25855857 1.0000 120 chr3R:18438856-18438976 1.0000 120 chr3L:17448036-17448156 1.0000 120 chr2L:16716947-16717067 1.0000 120 chr3L:19216527-19216647 1.0000 120 chr3L:11467117-11467237 1.0000 120 chr3L:882463-882583 1.0000 120 chr2L:3323542-3323662 1.0000 120 chr2L:18658271-18658391 1.0000 120 chr3L:9695820-9695940 1.0000 120 chr3R:10688944-10689064 1.0000 120 chr3L:21859798-21859918 1.0000 120 chr2R:10194995-10195115 1.0000 120 chr3R:28959256-28959376 1.0000 120 chr3L:11368007-11368127 1.0000 120 chr3L:917360-917480 1.0000 120 chr3L:7962068-7962188 1.0000 120 chrX:9119383-9119503 1.0000 120 chr3R:16476611-16476731 1.0000 120 chr3R:11663616-11663736 1.0000 120 chr3R:23181100-23181220 1.0000 120 chrX:9202200-9202320 1.0000 120 chr2R:14698953-14699073 1.0000 120 chr3L:9468424-9468544 1.0000 120 chr3R:15149858-15149978 1.0000 120 chr2L:20808345-20808465 1.0000 120 chr2L:11931751-11931871 1.0000 120 chrX:17293515-17293635 1.0000 120 chr3R:13441810-13441930 1.0000 120 chr3R:17007490-17007610 1.0000 120 chr2R:18994187-18994307 1.0000 120 chr2R:22205675-22205795 1.0000 120 chr3L:12275857-12275977 1.0000 120 chrX:6067646-6067766 1.0000 120 chrX:6439667-6439787 1.0000 120 chr2R:22661313-22661433 1.0000 120 chr2L:18954072-18954192 1.0000 120 chr2L:14141362-14141482 1.0000 120 chr3L:4720650-4720770 1.0000 120 chrX:5095743-5095863 1.0000 120 chr3L:13903394-13903514 1.0000 120 chr3R:26242638-26242758 1.0000 120 chr2R:16916252-16916372 1.0000 120 chr3L:21321947-21322067 1.0000 120 chrX:14727682-14727802 1.0000 120 chr3L:3485223-3485343 1.0000 120 chr3R:25168360-25168480 1.0000 120 chr2L:4861647-4861767 1.0000 120 chr3R:14875704-14875824 1.0000 120 chr3L:11285268-11285388 1.0000 120 chr2R:17206008-17206128 1.0000 120 chr2L:18966953-18967073 1.0000 120 chr3L:10893536-10893656 1.0000 120 chrX:12937940-12938060 1.0000 120 chr3R:25968616-25968736 1.0000 120 chr3R:11243199-11243319 1.0000 120 chr3R:6414898-6415018 1.0000 120 chr3R:16215029-16215149 1.0000 120 chrX:3399363-3399483 1.0000 120 chr2R:15846407-15846527 1.0000 120 chr3L:4534045-4534165 1.0000 120 chr2R:11232724-11232844 1.0000 120 chr2R:12035104-12035224 1.0000 120 chrX:16580111-16580231 1.0000 120 chr3R:5413091-5413211 1.0000 120 chr2L:3939001-3939121 1.0000 120 chr2L:13572209-13572329 1.0000 120 chrX:13109848-13109968 1.0000 120 chr2L:5445993-5446113 1.0000 120 chrX:3455555-3455675 1.0000 120 chr2R:12951521-12951641 1.0000 120 chr3L:1609749-1609869 1.0000 120 chr2L:19019196-19019316 1.0000 120 chr2L:18965701-18965821 1.0000 120 chr3R:26801517-26801637 1.0000 120 chr3R:26333422-26333542 1.0000 120 chrX:9350450-9350570 1.0000 120 chr3R:23969569-23969689 1.0000 120 chr3L:17532341-17532461 1.0000 120 chrX:11441107-11441227 1.0000 120 chr2L:14123670-14123790 1.0000 120 chr3L:3788956-3789076 1.0000 120 chr2L:3755261-3755381 1.0000 120 chr2R:11602035-11602155 1.0000 120 chr2L:9564636-9564756 1.0000 120 chr3R:14095534-14095654 1.0000 120 chr2R:14136879-14136999 1.0000 120 chrX:13320901-13321021 1.0000 120 chrX:947643-947763 1.0000 120 chr3L:2845308-2845428 1.0000 120 chr2R:7054353-7054473 1.0000 120 chr2R:21662490-21662610 1.0000 120 chr2L:4133240-4133360 1.0000 120 chr3R:26494412-26494532 1.0000 120 chrX:17330442-17330562 1.0000 120 chr3R:15129074-15129194 1.0000 120 chrX:20434696-20434816 1.0000 120 chr3L:9691288-9691408 1.0000 120 chr3R:17526234-17526354 1.0000 120 chr3L:960748-960868 1.0000 120 chrX:3019734-3019854 1.0000 120 chr3R:20950250-20950370 1.0000 120 chr3L:12270055-12270175 1.0000 120 chr2R:12547697-12547817 1.0000 120 chrX:2591685-2591805 1.0000 120 chr2L:13461067-13461187 1.0000 120 chr3R:20555146-20555266 1.0000 120 chr3L:11580070-11580190 1.0000 120 chrX:20631267-20631387 1.0000 120 chr3R:10520652-10520772 1.0000 120 chrX:11379275-11379395 1.0000 120 chrX:11848791-11848911 1.0000 120 chr3L:3437286-3437406 1.0000 120 chr3R:23067584-23067704 1.0000 120 chr3L:5182381-5182501 1.0000 120 chr2L:14405181-14405301 1.0000 120 chr2R:8734590-8734710 1.0000 120 chr3L:19073981-19074101 1.0000 120 chr3R:11872836-11872956 1.0000 120 chr3L:3786887-3787007 1.0000 120 chr3L:6157721-6157841 1.0000 120 chr2L:10760726-10760846 1.0000 120 chrX:12925965-12926085 1.0000 120 chrX:11885473-11885593 1.0000 120 chr2L:17588808-17588928 1.0000 120 chr3R:17385444-17385564 1.0000 120 chrX:10628977-10629097 1.0000 120 chr2R:18435190-18435310 1.0000 120 chr2L:3880216-3880336 1.0000 120 chr3L:16873360-16873480 1.0000 120 chr2R:14305266-14305386 1.0000 120 chr3R:26105967-26106087 1.0000 120 chrX:19166470-19166590 1.0000 120 chr2L:19930204-19930324 1.0000 120 chrX:12547710-12547830 1.0000 120 chr2L:20204755-20204875 1.0000 120 chr3R:26014359-26014479 1.0000 120 chr3R:29581623-29581743 1.0000 120 chr3R:29089783-29089903 1.0000 120 chr2L:20715151-20715271 1.0000 120 chrX:18094879-18094999 1.0000 120 chrX:14679286-14679406 1.0000 120 chr2R:15155048-15155168 1.0000 120 chr2L:9493495-9493615 1.0000 120 chr2R:18289130-18289250 1.0000 120 chr3L:16202709-16202829 1.0000 120 chr2R:8759575-8759695 1.0000 120 chrX:14840658-14840778 1.0000 120 chr2L:12542130-12542250 1.0000 120 chrX:13626039-13626159 1.0000 120 chr2L:7492034-7492154 1.0000 120 chr3L:18114143-18114263 1.0000 120 chr3L:9505463-9505583 1.0000 120 chr2L:2872669-2872789 1.0000 120 chr3R:21837139-21837259 1.0000 120 chr3L:6885792-6885912 1.0000 120 chr3R:13446633-13446753 1.0000 120 chr3L:11350673-11350793 1.0000 120 chr2L:7871980-7872100 1.0000 120 chr2R:10854308-10854428 1.0000 120 chr3L:20276758-20276878 1.0000 120 chr2L:3228854-3228974 1.0000 120 chrX:21375748-21375868 1.0000 120 chr3R:27289785-27289905 1.0000 120 chrX:16854878-16854998 1.0000 120 chr2L:22144320-22144440 1.0000 120 chr3L:15588561-15588681 1.0000 120 chrX:15120263-15120383 1.0000 120 chr3L:797054-797174 1.0000 120 chr3R:27440715-27440835 1.0000 120 chr3R:9344902-9345022 1.0000 120 chr3R:9494305-9494425 1.0000 120 chrX:1270717-1270837 1.0000 120 chrX:11925341-11925461 1.0000 120 chrX:8542109-8542229 1.0000 120 chr3R:26280484-26280604 1.0000 120 chrX:15297334-15297454 1.0000 120 chr3R:26117766-26117886 1.0000 120 chrX:8677577-8677697 1.0000 120 chr2L:16819824-16819944 1.0000 120 chr3R:7821731-7821851 1.0000 120 chr3R:26444244-26444364 1.0000 120 chr3R:26888463-26888583 1.0000 120 chr2R:8002303-8002423 1.0000 120 chrX:9899904-9900024 1.0000 120 chr3R:11809775-11809895 1.0000 120 chrX:12225446-12225566 1.0000 120 chrX:10573652-10573772 1.0000 120 chr2L:14376992-14377112 1.0000 120 chr3R:18906240-18906360 1.0000 120 chr3L:15977704-15977824 1.0000 120 chr3R:20259481-20259601 1.0000 120 chr3L:12271432-12271552 1.0000 120 chrX:10184801-10184921 1.0000 120 chr3R:4311307-4311427 1.0000 120 chrX:15297133-15297253 1.0000 120 chr2L:8894388-8894508 1.0000 120 chr2L:16544648-16544768 1.0000 120 chr3L:20517013-20517133 1.0000 120 chr3R:29068939-29069059 1.0000 120 chrX:16944120-16944240 1.0000 120 chr3R:30325596-30325716 1.0000 120 chr3R:18670562-18670682 1.0000 120 chr3R:8955046-8955166 1.0000 120 chr2R:21712008-21712128 1.0000 120 chr2R:12644250-12644370 1.0000 120 chr2R:12727680-12727800 1.0000 120 chr2L:9235633-9235753 1.0000 120 chr2R:13261843-13261963 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG2678/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2678.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.37 C 0.13 G 0.127 T 0.373 Background letter frequencies (from file dataset with add-one prior applied): A 0.37 C 0.13 G 0.127 T 0.373 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RGGGRGTC MEME-1 width = 8 sites = 6 llr = 74 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGGRGTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:::5::: pos.-specific C :::::::a probability G 78aa5a2: matrix T :2::::8: bits 3.0 ** * * 2.7 ** * * 2.4 ** * * 2.1 *** * * Relative 1.8 *** * * Entropy 1.5 **** * * (17.7 bits) 1.2 ****** * 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGGGAGTC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGGRGTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:21375748-21375868 1 2.73e-07 . GGGGGGGC AAAAAACACA chrX:8677577-8677697 103 8.65e-07 TTATAAAGTA GGGGAGTC TCTAAAGTCT chr3R:29089783-29089903 30 8.65e-07 CCTTGCTGTA GGGGAGTC AAAATACAGA chrX:14679286-14679406 4 1.66e-06 AAA AGGGGGTC CTAATCCAAA chr2R:12644250-12644370 14 2.46e-06 GGAGCTGGGA GTGGGGTC GAGCAAATAA chr3R:27289785-27289905 62 4.19e-06 GGAGGAATCG AGGGAGTC ACTTAATTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGGRGTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:21375748-21375868 2.7e-07 [+1]_112 chrX:8677577-8677697 8.7e-07 102_[+1]_10 chr3R:29089783-29089903 8.7e-07 29_[+1]_83 chrX:14679286-14679406 1.7e-06 3_[+1]_109 chr2R:12644250-12644370 2.5e-06 13_[+1]_99 chr3R:27289785-27289905 4.2e-06 61_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGGRGTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGGRGTC width=8 seqs=6 chrX:21375748-21375868 ( 1) GGGGGGGC 1 chrX:8677577-8677697 ( 103) GGGGAGTC 1 chr3R:29089783-29089903 ( 30) GGGGAGTC 1 chrX:14679286-14679406 ( 4) AGGGGGTC 1 chr2R:12644250-12644370 ( 14) GTGGGGTC 1 chr3R:27289785-27289905 ( 62) AGGGAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGGRGTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.3004 E= 2.0e+002 -15 -923 239 -923 -923 -923 271 -116 -923 -923 297 -923 -923 -923 297 -923 43 -923 197 -923 -923 -923 297 -923 -923 -923 39 116 -923 294 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGGRGTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.0e+002 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGGRGTC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]GGG[AG]GTC -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGTGGWG MEME-2 width = 8 sites = 5 llr = 62 E-value = 3.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGTGGWG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::4: pos.-specific C :62::::: probability G a48:aa:a matrix T :::a::6: bits 3.0 * ** * 2.7 * ** * 2.4 * * ** * 2.1 *** ** * Relative 1.8 *** ** * Entropy 1.5 ****** * (18.0 bits) 1.2 ****** * 0.9 ****** * 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCGTGGTG consensus GC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGGWG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12925965-12926085 107 5.98e-07 GTGTGCGATT GCGTGGTG CAGGCT chr2L:14141362-14141482 62 5.98e-07 ATAAGAAGAA GCGTGGTG TTGTATATTA chrX:13626039-13626159 17 1.77e-06 TGCAAAAAAT GGGTGGTG GTGAACCTTT chr3R:17385444-17385564 32 2.35e-06 TGAACTTTGT GGGTGGAG TTTGCATTTT chr2R:24139216-24139336 75 4.17e-06 CCAAGAAAGC GCCTGGAG TTATGCAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGGWG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12925965-12926085 6e-07 106_[+2]_6 chr2L:14141362-14141482 6e-07 61_[+2]_51 chrX:13626039-13626159 1.8e-06 16_[+2]_96 chr3R:17385444-17385564 2.4e-06 31_[+2]_81 chr2R:24139216-24139336 4.2e-06 74_[+2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGGWG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGTGGWG width=8 seqs=5 chrX:12925965-12926085 ( 107) GCGTGGTG 1 chr2L:14141362-14141482 ( 62) GCGTGGTG 1 chrX:13626039-13626159 ( 17) GGGTGGTG 1 chr3R:17385444-17385564 ( 32) GGGTGGAG 1 chr2R:24139216-24139336 ( 75) GCCTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGGWG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 3.6e+002 -897 -897 297 -897 -897 220 165 -897 -897 62 265 -897 -897 -897 -897 142 -897 -897 297 -897 -897 -897 297 -897 11 -897 -897 69 -897 -897 297 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGGWG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.6e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGTGGWG MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][GC]TGG[TA]G -------------------------------------------------------------------------------- Time 13.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGCCA MEME-3 width = 8 sites = 8 llr = 92 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::6 pos.-specific C 3::1:aa3 probability G 81a1a::1 matrix T :9:8:::: bits 3.0 * *** 2.7 * *** 2.4 * *** 2.1 * * *** Relative 1.8 * * *** Entropy 1.5 * * *** (16.5 bits) 1.2 *** *** 0.9 ******* 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGTGCCA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12925965-12926085 78 6.26e-07 ctcaagctAA GTGTGCCC TTTTTCGCTA chr2L:3228854-3228974 45 2.41e-06 GCTGTAGGTT GTGTGCCA TACAATTTAC chr2R:7879067-7879187 2 2.41e-06 A GTGTGCCA ATGGCATTTG chr2R:18289130-18289250 20 4.89e-06 CGCCACTCGA GTGGGCCA AAATGATGAC chrX:11885473-11885593 11 5.50e-06 GGTTGAAAAT GGGTGCCA TTAAGTCTAT chr3L:16146700-16146820 111 6.14e-06 TAACCCCAAC CTGTGCCC AT chrX:6439667-6439787 100 7.96e-06 CTTTTGCCCA CTGTGCCA AGTGGGCACT chr2L:3939001-3939121 96 8.39e-06 TGATAAATCA GTGCGCCG AGTGACCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12925965-12926085 6.3e-07 77_[+3]_35 chr2L:3228854-3228974 2.4e-06 44_[+3]_68 chr2R:7879067-7879187 2.4e-06 1_[+3]_111 chr2R:18289130-18289250 4.9e-06 19_[+3]_93 chrX:11885473-11885593 5.5e-06 10_[+3]_102 chr3L:16146700-16146820 6.1e-06 110_[+3]_2 chrX:6439667-6439787 8e-06 99_[+3]_13 chr2L:3939001-3939121 8.4e-06 95_[+3]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGCCA width=8 seqs=8 chrX:12925965-12926085 ( 78) GTGTGCCC 1 chr2L:3228854-3228974 ( 45) GTGTGCCA 1 chr2R:7879067-7879187 ( 2) GTGTGCCA 1 chr2R:18289130-18289250 ( 20) GTGGGCCA 1 chrX:11885473-11885593 ( 11) GGGTGCCA 1 chr3L:16146700-16146820 ( 111) CTGTGCCC 1 chrX:6439667-6439787 ( 100) CTGTGCCA 1 chr2L:3939001-3939121 ( 96) GTGCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 2.4e+003 -965 94 256 -965 -965 -965 -2 123 -965 -965 297 -965 -965 -6 -2 101 -965 -965 297 -965 -965 294 -965 -965 -965 294 -965 -965 76 94 -2 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.4e+003 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.125000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.250000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGCCA MEME-3 regular expression -------------------------------------------------------------------------------- [GC]TGTGCC[AC] -------------------------------------------------------------------------------- Time 20.06 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTTGSGG MEME-4 width = 8 sites = 2 llr = 27 E-value = 6.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTGSGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::5:: probability G aa::a5aa matrix T ::aa:::: bits 3.0 ** * ** 2.7 ** * ** 2.4 ** * ** 2.1 ** **** Relative 1.8 ** **** Entropy 1.5 ******** (19.7 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGTTGCGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGSGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13441810-13441930 9 5.84e-07 TAGGTGAT GGTTGGGG TCTGGAGGCG chr2R:21712008-21712128 16 1.18e-06 CTTTGAACAC GGTTGCGG ATTCAAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGSGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13441810-13441930 5.8e-07 8_[+4]_104 chr2R:21712008-21712128 1.2e-06 15_[+4]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGSGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTGSGG width=8 seqs=2 chr3R:13441810-13441930 ( 9) GGTTGGGG 1 chr2R:21712008-21712128 ( 16) GGTTGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGSGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.4e+003 -765 -765 297 -765 -765 -765 297 -765 -765 -765 -765 142 -765 -765 -765 142 -765 -765 297 -765 -765 194 197 -765 -765 -765 297 -765 -765 -765 297 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGSGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGSGG MEME-4 regular expression -------------------------------------------------------------------------------- GGTTG[CG]GG -------------------------------------------------------------------------------- Time 26.27 secs. ******************************************************************************** ******************************************************************************** MOTIF YCCCCAAG MEME-5 width = 8 sites = 5 llr = 62 E-value = 6.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCCCCAAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::aa: pos.-specific C 4aaa8::: probability G ::::2::a matrix T 6::::::: bits 3.0 *** * 2.7 *** * 2.4 *** * 2.1 **** * Relative 1.8 **** * Entropy 1.5 ******* (18.0 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TCCCCAAG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCAAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29068939-29069059 74 6.46e-07 TTTAAGTGCA CCCCCAAG CATCATAATA chrX:11885473-11885593 31 6.46e-07 AAGTCTATGC CCCCCAAG AATATACATA chr2L:14123670-14123790 38 2.50e-06 TAGGCGGAAA TCCCCAAG ATCAGGCTGT chr2L:4861647-4861767 1 2.50e-06 . TCCCCAAG TTTAAGTACA chr2R:12951521-12951641 77 4.94e-06 ACATTTATCA TCCCGAAG CTGCATTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCAAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29068939-29069059 6.5e-07 73_[+5]_39 chrX:11885473-11885593 6.5e-07 30_[+5]_82 chr2L:14123670-14123790 2.5e-06 37_[+5]_75 chr2L:4861647-4861767 2.5e-06 [+5]_112 chr2R:12951521-12951641 4.9e-06 76_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCAAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCCCCAAG width=8 seqs=5 chr3R:29068939-29069059 ( 74) CCCCCAAG 1 chrX:11885473-11885593 ( 31) CCCCCAAG 1 chr2L:14123670-14123790 ( 38) TCCCCAAG 1 chr2L:4861647-4861767 ( 1) TCCCCAAG 1 chr2R:12951521-12951641 ( 77) TCCCGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCAAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 6.9e+003 -897 162 -897 69 -897 294 -897 -897 -897 294 -897 -897 -897 294 -897 -897 -897 262 65 -897 143 -897 -897 -897 143 -897 -897 -897 -897 -897 297 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCAAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.9e+003 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCAAG MEME-5 regular expression -------------------------------------------------------------------------------- [TC]CCC[CG]AAG -------------------------------------------------------------------------------- Time 32.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10827491-10827611 9.97e-01 120 chr3L:11272854-11272974 7.36e-01 120 chrX:18004355-18004475 8.36e-01 120 chr3R:24007919-24008039 6.35e-03 75_[+2(9.87e-05)]_37 chr3R:25754967-25755087 3.82e-01 120 chrX:12073773-12073893 4.62e-01 120 chr2L:1619305-1619425 4.11e-01 120 chr3L:15616591-15616711 7.01e-01 120 chrX:8206023-8206143 6.17e-01 120 chr3L:14847550-14847670 2.47e-01 120 chr3L:15034460-15034580 9.81e-01 120 chr2R:22508129-22508249 3.75e-01 120 chr2R:6219986-6220106 4.62e-01 120 chr3R:22494641-22494761 3.41e-01 120 chr3L:5630264-5630384 7.17e-01 120 chr3L:12223134-12223254 7.62e-01 120 chr3L:14205033-14205153 9.34e-01 120 chr3L:9466673-9466793 9.95e-01 120 chrX:7550830-7550950 9.61e-01 120 chr3L:16146700-16146820 1.49e-02 110_[+3(6.14e-06)]_2 chr2L:6310026-6310146 4.53e-01 120 chr2R:10079894-10080014 5.16e-01 120 chr3L:6807644-6807764 1.04e-01 120 chr2R:9078063-9078183 9.91e-01 120 chr2L:1048499-1048619 6.30e-01 120 chr3R:12562190-12562310 9.15e-01 120 chr3L:16885227-16885347 8.48e-01 120 chr2L:17558222-17558342 1.00e+00 120 chr2L:7778415-7778535 4.64e-01 120 chr3R:13803975-13804095 8.00e-01 120 chr2R:7879067-7879187 1.71e-02 1_[+3(2.41e-06)]_111 chr2R:17918888-17919008 7.90e-03 64_[+1(8.18e-05)]_48 chr3R:16213942-16214062 1.00e+00 120 chr3L:5809223-5809343 8.17e-01 120 chr3L:16657094-16657214 7.34e-01 120 chr3R:12543061-12543181 5.08e-02 120 chrX:13208238-13208358 4.13e-01 120 chrX:13676621-13676741 8.33e-01 120 chr3L:1193451-1193571 9.91e-01 120 chr2R:24139216-24139336 1.20e-03 74_[+2(4.17e-06)]_38 chr3L:15923480-15923600 7.03e-01 120 chr3R:25855737-25855857 3.15e-01 120 chr3R:18438856-18438976 3.76e-01 120 chr3L:17448036-17448156 9.33e-01 120 chr2L:16716947-16717067 4.99e-01 120 chr3L:19216527-19216647 9.76e-01 120 chr3L:11467117-11467237 9.05e-01 120 chr3L:882463-882583 5.52e-01 120 chr2L:3323542-3323662 2.10e-02 120 chr2L:18658271-18658391 9.98e-01 120 chr3L:9695820-9695940 5.31e-01 120 chr3R:10688944-10689064 3.72e-01 120 chr3L:21859798-21859918 1.00e+00 120 chr2R:10194995-10195115 8.13e-02 120 chr3R:28959256-28959376 7.72e-01 120 chr3L:11368007-11368127 3.43e-02 120 chr3L:917360-917480 5.17e-01 120 chr3L:7962068-7962188 9.96e-01 120 chrX:9119383-9119503 5.38e-01 120 chr3R:16476611-16476731 9.39e-01 120 chr3R:11663616-11663736 7.00e-01 120 chr3R:23181100-23181220 6.66e-01 120 chrX:9202200-9202320 5.70e-01 120 chr2R:14698953-14699073 2.18e-01 120 chr3L:9468424-9468544 2.85e-02 66_[+1(1.47e-05)]_46 chr3R:15149858-15149978 9.99e-01 120 chr2L:20808345-20808465 9.60e-01 120 chr2L:11931751-11931871 3.36e-01 120 chrX:17293515-17293635 1.64e-01 120 chr3R:13441810-13441930 8.73e-07 8_[+4(5.84e-07)]_104 chr3R:17007490-17007610 9.22e-02 120 chr2R:18994187-18994307 9.18e-01 120 chr2R:22205675-22205795 1.71e-01 120 chr3L:12275857-12275977 9.84e-01 120 chrX:6067646-6067766 5.79e-01 120 chrX:6439667-6439787 1.13e-03 99_[+3(7.96e-06)]_13 chr2R:22661313-22661433 1.45e-01 120 chr2L:18954072-18954192 6.90e-01 120 chr2L:14141362-14141482 4.94e-04 61_[+2(5.98e-07)]_51 chr3L:4720650-4720770 1.74e-01 120 chrX:5095743-5095863 9.75e-01 120 chr3L:13903394-13903514 6.99e-01 120 chr3R:26242638-26242758 9.10e-01 120 chr2R:16916252-16916372 9.91e-01 120 chr3L:21321947-21322067 4.87e-01 120 chrX:14727682-14727802 7.97e-01 120 chr3L:3485223-3485343 1.00e+00 120 chr3R:25168360-25168480 4.36e-01 120 chr2L:4861647-4861767 9.96e-03 [+5(2.50e-06)]_112 chr3R:14875704-14875824 6.43e-02 120 chr3L:11285268-11285388 1.00e+00 120 chr2R:17206008-17206128 9.56e-01 120 chr2L:18966953-18967073 9.93e-01 120 chr3L:10893536-10893656 9.92e-01 120 chrX:12937940-12938060 9.97e-01 120 chr3R:25968616-25968736 3.90e-01 120 chr3R:11243199-11243319 9.12e-01 120 chr3R:6414898-6415018 9.84e-01 120 chr3R:16215029-16215149 7.50e-01 120 chrX:3399363-3399483 9.17e-01 120 chr2R:15846407-15846527 4.35e-01 120 chr3L:4534045-4534165 5.99e-01 120 chr2R:11232724-11232844 9.99e-01 120 chr2R:12035104-12035224 8.41e-01 120 chrX:16580111-16580231 4.33e-01 120 chr3R:5413091-5413211 3.42e-01 120 chr2L:3939001-3939121 2.42e-03 95_[+3(8.39e-06)]_17 chr2L:13572209-13572329 1.00e+00 120 chrX:13109848-13109968 5.17e-01 120 chr2L:5445993-5446113 8.96e-01 120 chrX:3455555-3455675 9.91e-01 120 chr2R:12951521-12951641 5.59e-03 76_[+5(4.94e-06)]_36 chr3L:1609749-1609869 3.92e-01 120 chr2L:19019196-19019316 4.10e-01 120 chr2L:18965701-18965821 4.86e-04 6_[+1(6.56e-05)]_106 chr3R:26801517-26801637 9.36e-01 120 chr3R:26333422-26333542 6.52e-01 120 chrX:9350450-9350570 1.36e-01 120 chr3R:23969569-23969689 7.34e-01 120 chr3L:17532341-17532461 9.73e-01 120 chrX:11441107-11441227 9.51e-01 120 chr2L:14123670-14123790 1.55e-03 37_[+5(2.50e-06)]_75 chr3L:3788956-3789076 9.67e-01 120 chr2L:3755261-3755381 1.00e+00 120 chr2R:11602035-11602155 2.32e-02 120 chr2L:9564636-9564756 7.08e-01 120 chr3R:14095534-14095654 6.59e-01 120 chr2R:14136879-14136999 2.70e-01 120 chrX:13320901-13321021 4.96e-01 120 chrX:947643-947763 3.18e-01 120 chr3L:2845308-2845428 7.64e-01 120 chr2R:7054353-7054473 9.28e-01 120 chr2R:21662490-21662610 9.28e-01 120 chr2L:4133240-4133360 1.07e-01 120 chr3R:26494412-26494532 8.38e-01 120 chrX:17330442-17330562 3.11e-01 120 chr3R:15129074-15129194 1.70e-01 120 chrX:20434696-20434816 9.68e-01 120 chr3L:9691288-9691408 7.07e-01 120 chr3R:17526234-17526354 9.95e-01 120 chr3L:960748-960868 2.76e-03 42_[+4(4.92e-05)]_18_[+4(4.92e-05)]_\ 44 chrX:3019734-3019854 5.40e-01 120 chr3R:20950250-20950370 6.88e-03 88_[+4(2.86e-05)]_6_[+4(2.86e-05)]_\ 10 chr3L:12270055-12270175 8.46e-02 120 chr2R:12547697-12547817 7.12e-01 120 chrX:2591685-2591805 1.82e-02 120 chr2L:13461067-13461187 6.58e-02 120 chr3R:20555146-20555266 3.10e-01 120 chr3L:11580070-11580190 8.92e-01 120 chrX:20631267-20631387 1.46e-02 120 chr3R:10520652-10520772 1.89e-01 120 chrX:11379275-11379395 9.64e-01 120 chrX:11848791-11848911 4.73e-01 120 chr3L:3437286-3437406 1.00e+00 120 chr3R:23067584-23067704 9.03e-01 120 chr3L:5182381-5182501 1.00e+00 120 chr2L:14405181-14405301 4.75e-01 120 chr2R:8734590-8734710 9.20e-02 120 chr3L:19073981-19074101 9.14e-01 120 chr3R:11872836-11872956 1.91e-01 120 chr3L:3786887-3787007 2.61e-01 120 chr3L:6157721-6157841 9.60e-01 120 chr2L:10760726-10760846 9.98e-01 120 chrX:12925965-12926085 4.81e-08 77_[+3(6.26e-07)]_21_[+2(5.98e-07)]_\ 6 chrX:11885473-11885593 5.34e-08 10_[+3(5.50e-06)]_12_[+5(6.46e-07)]_\ 57_[+1(8.18e-05)]_17 chr2L:17588808-17588928 9.91e-01 120 chr3R:17385444-17385564 2.98e-05 31_[+2(2.35e-06)]_81 chrX:10628977-10629097 3.67e-01 120 chr2R:18435190-18435310 8.58e-01 120 chr2L:3880216-3880336 7.25e-01 120 chr3L:16873360-16873480 2.77e-02 100_[+2(1.64e-05)]_12 chr2R:14305266-14305386 8.93e-01 120 chr3R:26105967-26106087 9.14e-01 120 chrX:19166470-19166590 4.97e-01 120 chr2L:19930204-19930324 8.89e-01 120 chrX:12547710-12547830 3.16e-02 120 chr2L:20204755-20204875 2.86e-01 120 chr3R:26014359-26014479 6.08e-01 120 chr3R:29581623-29581743 6.62e-01 120 chr3R:29089783-29089903 5.77e-05 29_[+1(8.65e-07)]_83 chr2L:20715151-20715271 5.79e-01 120 chrX:18094879-18094999 9.56e-01 120 chrX:14679286-14679406 2.49e-03 3_[+1(1.66e-06)]_109 chr2R:15155048-15155168 9.44e-01 120 chr2L:9493495-9493615 5.05e-01 120 chr2R:18289130-18289250 1.59e-04 19_[+3(4.89e-06)]_93 chr3L:16202709-16202829 5.02e-01 120 chr2R:8759575-8759695 8.99e-01 120 chrX:14840658-14840778 1.00e+00 120 chr2L:12542130-12542250 7.01e-01 120 chrX:13626039-13626159 1.38e-04 16_[+2(1.77e-06)]_96 chr2L:7492034-7492154 7.45e-01 120 chr3L:18114143-18114263 8.16e-01 120 chr3L:9505463-9505583 5.65e-01 120 chr2L:2872669-2872789 5.69e-01 120 chr3R:21837139-21837259 9.81e-01 120 chr3L:6885792-6885912 1.00e+00 120 chr3R:13446633-13446753 9.36e-01 120 chr3L:11350673-11350793 9.70e-01 120 chr2L:7871980-7872100 7.62e-01 120 chr2R:10854308-10854428 8.11e-01 120 chr3L:20276758-20276878 2.81e-01 120 chr2L:3228854-3228974 9.61e-04 44_[+3(2.41e-06)]_68 chrX:21375748-21375868 1.43e-04 [+1(2.73e-07)]_112 chr3R:27289785-27289905 2.65e-04 61_[+1(4.19e-06)]_51 chrX:16854878-16854998 4.83e-01 120 chr2L:22144320-22144440 8.62e-01 120 chr3L:15588561-15588681 5.83e-01 120 chrX:15120263-15120383 1.89e-01 120 chr3L:797054-797174 6.84e-01 120 chr3R:27440715-27440835 9.64e-01 120 chr3R:9344902-9345022 5.15e-01 120 chr3R:9494305-9494425 1.96e-01 120 chrX:1270717-1270837 5.12e-01 120 chrX:11925341-11925461 9.09e-01 120 chrX:8542109-8542229 9.44e-03 120 chr3R:26280484-26280604 9.63e-03 28_[+1(6.56e-05)]_84 chrX:15297334-15297454 7.09e-05 99_[+3(6.38e-05)]_4_[+2(1.20e-05)]_\ 1 chr3R:26117766-26117886 1.77e-01 120 chrX:8677577-8677697 5.85e-05 102_[+1(8.65e-07)]_10 chr2L:16819824-16819944 3.49e-01 120 chr3R:7821731-7821851 3.63e-01 120 chr3R:26444244-26444364 9.91e-01 120 chr3R:26888463-26888583 2.18e-01 120 chr2R:8002303-8002423 9.99e-01 120 chrX:9899904-9900024 8.94e-01 120 chr3R:11809775-11809895 6.27e-01 120 chrX:12225446-12225566 9.88e-01 120 chrX:10573652-10573772 9.05e-01 120 chr2L:14376992-14377112 7.26e-01 120 chr3R:18906240-18906360 9.11e-01 120 chr3L:15977704-15977824 9.58e-01 120 chr3R:20259481-20259601 9.93e-02 120 chr3L:12271432-12271552 8.64e-01 120 chrX:10184801-10184921 7.01e-01 120 chr3R:4311307-4311427 9.15e-01 120 chrX:15297133-15297253 9.81e-01 120 chr2L:8894388-8894508 2.37e-01 120 chr2L:16544648-16544768 8.63e-01 120 chr3L:20517013-20517133 8.30e-01 120 chr3R:29068939-29069059 4.05e-04 73_[+5(6.46e-07)]_39 chrX:16944120-16944240 9.00e-01 120 chr3R:30325596-30325716 5.60e-01 120 chr3R:18670562-18670682 6.44e-01 120 chr3R:8955046-8955166 9.20e-01 120 chr2R:21712008-21712128 2.79e-03 15_[+4(1.18e-06)]_97 chr2R:12644250-12644370 2.92e-06 13_[+1(2.46e-06)]_99 chr2R:12727680-12727800 2.85e-01 120 chr2L:9235633-9235753 3.83e-01 120 chr2R:13261843-13261963 3.55e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************