******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2202.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:22161738-22161858 1.0000 120 chrX:581985-582105 1.0000 120 chr2R:12441410-12441530 1.0000 120 chrX:13633404-13633524 1.0000 120 chr3L:17993417-17993537 1.0000 120 chr2R:14787881-14788001 1.0000 120 chr2L:19370211-19370331 1.0000 120 chr2L:15324216-15324336 1.0000 120 chr2R:11403200-11403320 1.0000 120 chr3L:8379306-8379426 1.0000 120 chr2L:18556519-18556639 1.0000 120 chr2L:5881066-5881186 1.0000 120 chrX:3832379-3832499 1.0000 120 chr2L:3570667-3570787 1.0000 120 chr2L:16714007-16714127 1.0000 120 chr2L:4365057-4365177 1.0000 120 chrX:6937604-6937724 1.0000 120 chr2L:6818509-6818629 1.0000 120 chr2L:14673839-14673959 1.0000 120 chr3R:5761103-5761223 1.0000 120 chr2R:7951911-7952031 1.0000 120 chr3R:10169263-10169383 1.0000 120 chr3L:18198272-18198392 1.0000 120 chr2R:18436258-18436378 1.0000 120 chr3L:20915250-20915370 1.0000 120 chr3R:28552389-28552509 1.0000 120 chr3L:16056365-16056485 1.0000 120 chr3R:20548399-20548519 1.0000 120 chr2R:16162583-16162703 1.0000 120 chr2L:470083-470203 1.0000 120 chr3L:7961338-7961458 1.0000 120 chr2L:5338790-5338910 1.0000 120 chr2L:15465245-15465365 1.0000 120 chr3R:19821061-19821181 1.0000 120 chr3R:21835471-21835591 1.0000 120 chr2R:22158061-22158181 1.0000 120 chr2R:21848642-21848762 1.0000 120 chr2R:9421186-9421306 1.0000 120 chr3R:16907938-16908058 1.0000 120 chr2R:14486947-14487067 1.0000 120 chr3L:17937438-17937558 1.0000 120 chr2L:5379036-5379156 1.0000 120 chr3R:10498692-10498812 1.0000 120 chr3R:6765044-6765164 1.0000 120 chr3L:4272290-4272410 1.0000 120 chr3L:11486104-11486224 1.0000 120 chr3L:11317549-11317669 1.0000 120 chr3L:2468510-2468630 1.0000 120 chrX:15618030-15618150 1.0000 120 chr3L:14274810-14274930 1.0000 120 chr3L:17033415-17033535 1.0000 120 chr3R:8155888-8156008 1.0000 120 chr3L:110069-110189 1.0000 120 chr2R:13305656-13305776 1.0000 120 chr2R:17086997-17087117 1.0000 120 chr3R:5327987-5328107 1.0000 120 chrX:15497852-15497972 1.0000 120 chr2R:21888941-21889061 1.0000 120 chr3R:21001257-21001377 1.0000 120 chr2L:8558713-8558833 1.0000 120 chrX:19839282-19839402 1.0000 120 chr3L:6312223-6312343 1.0000 120 chr2L:14235087-14235207 1.0000 120 chrX:12889253-12889373 1.0000 120 chr2R:8683524-8683644 1.0000 120 chr3L:19694145-19694265 1.0000 120 chr3L:3141508-3141628 1.0000 120 chr2R:18202728-18202848 1.0000 120 chr3L:1742696-1742816 1.0000 120 chr2L:3577611-3577731 1.0000 120 chrX:3752055-3752175 1.0000 120 chr3R:15664448-15664568 1.0000 120 chr2L:6595139-6595259 1.0000 120 chr2L:11341036-11341156 1.0000 120 chr3L:7996509-7996629 1.0000 120 chr2L:18335812-18335932 1.0000 120 chr3R:9215651-9215771 1.0000 120 chr2R:22379312-22379432 1.0000 120 chr3R:31712686-31712806 1.0000 120 chr3R:16285869-16285989 1.0000 120 chr3R:10521307-10521427 1.0000 120 chr3L:18357791-18357911 1.0000 120 chr3L:8544002-8544122 1.0000 120 chr2L:8576651-8576771 1.0000 120 chr3L:20507695-20507815 1.0000 120 chr3L:5947195-5947315 1.0000 120 chr3R:23302314-23302434 1.0000 120 chr3R:30812065-30812185 1.0000 120 chrX:3354497-3354617 1.0000 120 chr2L:9189429-9189549 1.0000 120 chr3L:5017719-5017839 1.0000 120 chr2R:12007848-12007968 1.0000 120 chr2L:6252346-6252466 1.0000 120 chrX:14234599-14234719 1.0000 120 chr2L:18496948-18497068 1.0000 120 chr3R:24768135-24768255 1.0000 120 chr2L:10505017-10505137 1.0000 120 chr3L:14354664-14354784 1.0000 120 chr3R:21834407-21834527 1.0000 120 chr3R:15667185-15667305 1.0000 120 chr3L:4614061-4614181 1.0000 120 chr3R:5112072-5112192 1.0000 120 chr3R:17049127-17049247 1.0000 120 chr2L:5338118-5338238 1.0000 120 chr3L:3882175-3882295 1.0000 120 chr2R:9200820-9200940 1.0000 120 chr2L:1738211-1738331 1.0000 120 chr3L:8835053-8835173 1.0000 120 chr2L:8080822-8080942 1.0000 120 chr2L:1723116-1723236 1.0000 120 chr3R:8197248-8197368 1.0000 120 chr2R:14009804-14009924 1.0000 120 chrX:17357493-17357613 1.0000 120 chr3L:295172-295292 1.0000 120 chr3R:16082528-16082648 1.0000 120 chrX:3967699-3967819 1.0000 120 chr3L:19192010-19192130 1.0000 120 chr3R:17828826-17828946 1.0000 120 chrX:2462106-2462226 1.0000 120 chr3R:24031091-24031211 1.0000 120 chr3R:19822305-19822425 1.0000 120 chr2R:23798541-23798661 1.0000 120 chr2R:7473822-7473942 1.0000 120 chrX:768784-768904 1.0000 120 chr2L:10497542-10497662 1.0000 120 chr3R:5016458-5016578 1.0000 120 chr2L:12457342-12457462 1.0000 120 chr2R:13474997-13475117 1.0000 120 chr3L:6352362-6352482 1.0000 120 chr3L:19056929-19057049 1.0000 120 chr3R:16276327-16276447 1.0000 120 chr3L:11286751-11286871 1.0000 120 chr3R:21823175-21823295 1.0000 120 chr2L:22037035-22037155 1.0000 120 chr3L:19184235-19184355 1.0000 120 chr2L:6826471-6826591 1.0000 120 chrX:13645192-13645312 1.0000 120 chr3R:15670657-15670777 1.0000 120 chr2L:3841121-3841241 1.0000 120 chr2L:20327533-20327653 1.0000 120 chr2L:6091355-6091475 1.0000 120 chr3R:9550419-9550539 1.0000 120 chr2R:23180945-23181065 1.0000 120 chr3R:29548892-29549012 1.0000 120 chr2R:17274152-17274272 1.0000 120 chr3R:30919045-30919165 1.0000 120 chr3L:19674462-19674582 1.0000 120 chr3R:17655131-17655251 1.0000 120 chrX:18238035-18238155 1.0000 120 chr2L:18930870-18930990 1.0000 120 chr3L:16640619-16640739 1.0000 120 chr3L:20954232-20954352 1.0000 120 chr3R:30733283-30733403 1.0000 120 chr3R:6664500-6664620 1.0000 120 chr2R:8242624-8242744 1.0000 120 chr2L:18625537-18625657 1.0000 120 chr2R:22403178-22403298 1.0000 120 chr3L:380924-381044 1.0000 120 chr2R:10212515-10212635 1.0000 120 chr3R:8180479-8180599 1.0000 120 chr3L:13232933-13233053 1.0000 120 chr3R:31549223-31549343 1.0000 120 chr3R:24293307-24293427 1.0000 120 chrX:10115674-10115794 1.0000 120 chr2R:7167937-7168057 1.0000 120 chr3L:17532305-17532425 1.0000 120 chr3R:10354076-10354196 1.0000 120 chr3L:8925802-8925922 1.0000 120 chr3L:13068399-13068519 1.0000 120 chr2R:6603137-6603257 1.0000 120 chr2R:14077586-14077706 1.0000 120 chr2L:20935498-20935618 1.0000 120 chr3L:19040483-19040603 1.0000 120 chr2L:18871862-18871982 1.0000 120 chr3L:21961970-21962090 1.0000 120 chr2R:11541226-11541346 1.0000 120 chr2R:11582122-11582242 1.0000 120 chr3R:11617498-11617618 1.0000 120 chr2L:3548991-3549111 1.0000 120 chr2R:6607589-6607709 1.0000 120 chr3R:6665437-6665557 1.0000 120 chr3R:14748781-14748901 1.0000 120 chrX:3136855-3136975 1.0000 120 chr3R:29541497-29541617 1.0000 120 chr2L:3600967-3601087 1.0000 120 chr3L:18297460-18297580 1.0000 120 chr3R:5320773-5320893 1.0000 120 chr2R:12458289-12458409 1.0000 120 chr3L:15672949-15673069 1.0000 120 chr2R:20091298-20091418 1.0000 120 chr3L:15706322-15706442 1.0000 120 chr3L:15199329-15199449 1.0000 120 chrX:4609880-4610000 1.0000 120 chr3L:11273639-11273759 1.0000 120 chr2R:14803426-14803546 1.0000 120 chr2R:6119004-6119124 1.0000 120 chr2R:14494771-14494891 1.0000 120 chr3L:15794441-15794561 1.0000 120 chrX:3396956-3397076 1.0000 120 chr3L:12606464-12606584 1.0000 120 chr2R:6573391-6573511 1.0000 120 chr3L:3978113-3978233 1.0000 120 chr3L:20613036-20613156 1.0000 120 chr2L:16476745-16476865 1.0000 120 chrX:4581897-4582017 1.0000 120 chr3L:3390742-3390862 1.0000 120 chr3L:11540378-11540498 1.0000 120 chr3R:23803848-23803968 1.0000 120 chr3R:21835671-21835791 1.0000 120 chr2L:7293613-7293733 1.0000 120 chr3R:15983735-15983855 1.0000 120 chr2L:7566807-7566927 1.0000 120 chr3R:6949473-6949593 1.0000 120 chr3L:18242255-18242375 1.0000 120 chr2L:14236281-14236401 1.0000 120 chr2L:7277101-7277221 1.0000 120 chr3L:3873168-3873288 1.0000 120 chr2L:7628496-7628616 1.0000 120 chr2R:14971224-14971344 1.0000 120 chr2R:10238134-10238254 1.0000 120 chr2R:10485600-10485720 1.0000 120 chr3L:17404807-17404927 1.0000 120 chrX:7579943-7580063 1.0000 120 chr3R:21865160-21865280 1.0000 120 chr3R:20262870-20262990 1.0000 120 chr2R:10059090-10059210 1.0000 120 chr2L:3121884-3122004 1.0000 120 chr3R:29083917-29084037 1.0000 120 chr3L:7962454-7962574 1.0000 120 chrX:7553633-7553753 1.0000 120 chr2R:18608998-18609118 1.0000 120 chr2L:20716183-20716303 1.0000 120 chr2L:6291837-6291957 1.0000 120 chr3R:15677728-15677848 1.0000 120 chrX:7552228-7552348 1.0000 120 chr2R:9406847-9406967 1.0000 120 chrX:7166492-7166612 1.0000 120 chr3R:31704667-31704787 1.0000 120 chr3L:905117-905237 1.0000 120 chr2L:7519081-7519201 1.0000 120 chr3R:4846943-4847063 1.0000 120 chr2L:12465820-12465940 1.0000 120 chr3R:13404968-13405088 1.0000 120 chr3R:14386270-14386390 1.0000 120 chrX:10582177-10582297 1.0000 120 chr3L:20664124-20664244 1.0000 120 chr3R:29265273-29265393 1.0000 120 chr3L:14971975-14972095 1.0000 120 chr3R:22878526-22878646 1.0000 120 chr3R:14482077-14482197 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG2202/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2202.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.313 C 0.189 G 0.192 T 0.306 Background letter frequencies (from file dataset with add-one prior applied): A 0.313 C 0.189 G 0.192 T 0.306 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WTRTTTRY MEME-1 width = 8 sites = 120 llr = 829 E-value = 4.7e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5:4:::4: pos.-specific C :::::::5 probability G 1:6:2:6: matrix T 4a:a8a:5 bits 2.4 2.2 1.9 1.7 * * * Relative 1.4 * * * Entropy 1.2 ****** (10.0 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGTTTGC consensus T A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9406847-9406967 37 1.91e-05 tttttggttt atgtttGC TATTGGGTGG chr3R:16276327-16276447 112 1.91e-05 GGTCTTCCCA ATGTTTGC T chr3L:8835053-8835173 52 1.91e-05 ATCTGTACAA ATGTTTGC CTTCGCCGGG chr2R:13305656-13305776 20 1.91e-05 TACCGTTTGC ATGTTTGC ATATTGAATA chr3L:16056365-16056485 39 1.91e-05 GTCAACATCA ATGTTTGC TTGATAAATA chr3R:10169263-10169383 65 1.91e-05 TATATCGGTC ATGTTTGC GGACTTGGCC chr3L:20664124-20664244 83 3.78e-05 GTGCTGTCTG TTGTTTGC CATGTTTTTG chrX:7166492-7166612 82 3.78e-05 ACTCAAAAGT TTGTTTGC TGGACGTGCG chr2R:12458289-12458409 27 3.78e-05 GCCATCTGAA TTGTTTGC TTTGGGACTT chr3R:31549223-31549343 49 3.78e-05 TAATTTGCAT TTGTTTGC CTTACAGATA chr2L:18625537-18625657 20 3.78e-05 TGTTTTATCG TTGTTTGC TTTATCAACT chr3R:30919045-30919165 67 3.78e-05 AGTCCTTAGC TTGTTTGC CAAGTTGTTA chr3R:29548892-29549012 38 3.78e-05 TATTTATGAT TTGTTTGC TCATCGGCTG chr2R:12007848-12007968 8 3.78e-05 ACCGACT TTGTTTGC CTCTCGCAGA chr3R:30812065-30812185 77 3.78e-05 GTATCTTGCT TTGTTTGC AGTTCTTGAG chr2R:8683524-8683644 48 3.78e-05 CGTGCCGTGT TTGTTTGC CCCCGTGCCA chrX:19839282-19839402 41 3.78e-05 TTTACGACTC TTGTTTGC ATATTTGCAT chr2R:18436258-18436378 60 3.78e-05 TAAAAGAGCA TTGTTTGC GCGGGCCAAA chrX:3396956-3397076 73 6.88e-05 ATAAATATAT ATGTTTGT TAATAGTATG chr3R:29541497-29541617 97 6.88e-05 AGTGCTGCTT ATGTTTGT GTATATATTC chr3R:24293307-24293427 73 6.88e-05 ATAAATATTT ATGTTTGT CAAAATACTG chr3R:8180479-8180599 54 6.88e-05 GATAGCATAT ATGTTTGT ATAGCGAGCT chr3L:16640619-16640739 42 6.88e-05 AAAGTTGTTT ATGTTTGT GGTGCCATGC chr3R:17828826-17828946 23 6.88e-05 TCTAGGTGGA ATGTTTGT GTTTGTATTT chr3L:20915250-20915370 7 6.88e-05 AAAATA ATGTTTGT TTACGATGGT chr3L:8379306-8379426 60 6.88e-05 GGAGTACAGA ATGTTTGT CGGGCAAACA chr2R:18608998-18609118 73 9.90e-05 CCCGTTTTGT TTGTTTGT CTGGAATTGA chr3L:8925802-8925922 75 9.90e-05 CGTTATTATG TTGTTTGT TCGTTGTTTA chr3R:5016458-5016578 6 9.90e-05 ATGCG TTGTTTGT TAATGTCTGC chr3L:14354664-14354784 25 9.90e-05 CACTCGTCGT TTGTTTGT TGAGAAAACA chr2L:3577611-3577731 19 9.90e-05 CGATCTTGTT TTGTTTGT TGTCAAAGGC chrX:7579943-7580063 81 1.30e-04 GAACTATTTC ATATTTGC ATAAGAACAA chr2L:16476745-16476865 90 1.30e-04 GCCACAGCCA ATATTTGC GACTGGATTT chr3L:19040483-19040603 94 1.30e-04 GTTTCCGTAA ATATTTGC TTAGAACGTG chr2L:10497542-10497662 113 1.30e-04 CTAGATAAAC ATATTTGC chr2R:18202728-18202848 53 1.30e-04 TTGTTTTCGT ATATTTGC GCTTGGGCTC chr3L:11317549-11317669 24 1.30e-04 AGCACGCACA ATATTTGC TTTCAAGCAT chr3R:31704667-31704787 80 1.61e-04 ATTCAACTGC TTATTTGC CTTATCCTAA chr3L:5947195-5947315 8 1.61e-04 TCGGTTG TTATTTGC TTTATGGCTG chr2L:8576651-8576771 14 1.61e-04 CACTGTTGAC TTATTTGC TTTGAGATAA chr3L:14274810-14274930 16 1.61e-04 GAAATATTTA TTATTTGC TTATAAGGCC chr2R:16162583-16162703 80 1.61e-04 CAAGAAGTGT TTATTTGC CCCGAGCGAT chr3R:22878526-22878646 12 2.04e-04 GACATTAAGT ATGTTTAC ATAGCTTATC chrX:3967699-3967819 34 2.04e-04 CGTGTGTCAA ATGTTTAC TAAAATACCT chr3R:10521307-10521427 87 2.04e-04 GACAACTTCT GTGTTTGC TGTTCTGGTT chr2R:17086997-17087117 38 2.04e-04 AGCCTATCGT ATGTTTAC CTCGTATGTT chrX:7552228-7552348 52 2.46e-04 TGGACCGAAA ATGTGTGC AACATATAAT chr2R:10059090-10059210 76 2.46e-04 AGAATTCGAA TTGTTTAC AGACATTCTA chr3R:21865160-21865280 83 2.46e-04 TTAAATTTAG TTGTTTAC TAACAAATAT chr3R:14748781-14748901 52 2.46e-04 TAAGTGCCGA TTGTTTAC CTAGAAATTA chr2R:10212515-10212635 93 2.46e-04 TTGGGTGAAA TTGTTTAC TTATCAGAGG chr2R:8242624-8242744 42 2.46e-04 CAATATTCTC TTGTTTAC AATGCAAATA chr3R:15667185-15667305 68 2.46e-04 GGCGACACCT TTGTTTAC CTGCATTTTC chr2L:6252346-6252466 16 2.46e-04 ACTTTTGTAG TTGTTTAC ATGACCCCCA chr2L:9189429-9189549 13 2.46e-04 TCATTATTTC TTGTTTAC ATTTCGCTCT chr3R:28552389-28552509 6 2.46e-04 GCTCG ATGTGTGC GTGTGCGAGT chr2L:3570667-3570787 104 2.46e-04 GATTTCTAAT TTGTTTAC ACTCAAACA chr2L:12465820-12465940 56 3.08e-04 AAATATTTGT ATATTTGT GTATATAGTG chr3L:13232933-13233053 108 3.08e-04 ATGTTGGTCA ATATTTGT GGTTT chr3L:20954232-20954352 93 3.08e-04 TTGATCCAGT ATATTTGT ACAGACCCGA chr3L:19184235-19184355 82 3.08e-04 TTTTGTCAAA ATATTTGT GTAAGAACTC chr3L:7961338-7961458 3 3.08e-04 AT ATATTTGT ATTGATTTTA chr3R:20548399-20548519 77 3.08e-04 TAATTAAGGA ATATTTGT CCAAACTGTC chr2L:16714007-16714127 108 3.08e-04 GATTTCCTTT TTGTGTGC TGGCT chr2L:5881066-5881186 17 3.08e-04 CAACGGTTAA ATATTTGT GCAGCACTGT chrX:581985-582105 80 3.08e-04 TACACTATTG ATATTTGT TCAACTCGGC chr3L:3390742-3390862 98 3.58e-04 CCGTCAACAA TTATTTGT CCAGAGATTA chr3R:5320773-5320893 57 3.58e-04 AGACTTATAT TTATTTGT GTAATTATGA chrX:2462106-2462226 49 3.58e-04 ATTTTTGTTT TTATTTGT TTCGCTTATT chr3L:20507695-20507815 60 3.58e-04 TTTGCTCTTC TTATTTGT TTAGAAGCTG chr2L:18335812-18335932 15 3.58e-04 TTATTCTTCA TTATTTGT ATTTTGATTG chr3R:14482077-14482197 25 4.27e-04 CCATTCGAAT GTGTTTGT AAATTTACAC chr2R:10485600-10485720 76 4.27e-04 GGTGTTTTCC ATGTTTAT TTTCCTATTC chr3L:12606464-12606584 52 4.27e-04 ATTTATGAAT GTGTTTGT TCTTGCTGGT chr2L:1738211-1738331 61 4.27e-04 ATTTAAAATT ATGTTTAT GTTTTATTTC chr3L:4614061-4614181 44 4.27e-04 CACACTTCTC ATGTTTAT TTTAGATCGG chr3R:15677728-15677848 63 4.96e-04 GTAATGCTGT TTGTTTAT GCTCTCAATC chr2L:3121884-3122004 85 4.96e-04 GCTCTTGGCT TTGTTTAT CTACAAGTTA chr2L:7628496-7628616 9 4.96e-04 GGCCAAAC ATGTGTGT CTGCGGGTCT chr3L:11540378-11540498 43 4.96e-04 ATGCATACTC ATGTGTGT CAATATTTGG chr2L:12457342-12457462 13 4.96e-04 tttcgtatgg atgtgtgt gtaaatgcgt chr2L:18496948-18497068 8 4.96e-04 TTTGTTT ATGTGTGT TTTAAGCTGC chr3R:16285869-16285989 74 4.96e-04 TTCCTTATCA TTGTTTAT TTTAAGCACC chr2R:12441410-12441530 74 4.96e-04 AATCTAAATA TTGTTTAT TTACAATATA chr3R:15983735-15983855 18 5.85e-04 TGCTTACTAA ATATTTAC TTCTGTCCCT chrX:3136855-3136975 34 5.85e-04 GCTTACTTGG GTATTTGC ATATGGAGCG chr2R:14077586-14077706 29 5.85e-04 GGGAAAATCA ATATTTAC ATAGACACAA chr2R:22403178-22403298 69 5.85e-04 TCAAATATTT ATATTTAC ATGCACACAC chrX:18238035-18238155 75 5.85e-04 AGGTGTGACA ATATTTAC AATGTCTTGT chr2L:22037035-22037155 29 5.85e-04 CATCTGGCAA ATATTTAC ATAAGTCGGG chrX:3354497-3354617 86 5.85e-04 GCCACTGTAA ATATTTAC ATGTGCAGCC chr3L:7996509-7996629 8 5.85e-04 CTGTTAA TTGTGTGT GATCTTGAGC chr2L:15324216-15324336 98 5.85e-04 TGACATGAGC ATATTTAC CACAAAATGG chr2L:6595139-6595259 70 6.54e-04 atatttatag ttatttac aaaatatata chr3R:21001257-21001377 66 6.92e-04 TAGGTCCTAT GTGTTTAC CAGGGTAAAT chr3R:23803848-23803968 62 7.19e-04 GTGAGCGAGT GTGTGTGC CTAGCATGGC chr3R:5327987-5328107 43 7.19e-04 AAATATTTAT GTGTGTGC AAGCAGTGAA chr3R:14386270-14386390 28 8.51e-04 TGATCAAATG GTATTTGT ATTCAAAGTA chr3R:20262870-20262990 86 8.51e-04 AGATTGATTA ATATTTAT CATTAAAAAG chr3L:17404807-17404927 112 8.51e-04 GGAAAATGAT ATATTTAT T chr3R:9550419-9550539 36 8.51e-04 TTTGATCAGG GTATTTGT GGTAAATATT chr3R:15664448-15664568 7 8.51e-04 TTGATG ATATTTAT TGtaaagaaa chr2L:14235087-14235207 100 8.51e-04 TAAATATAAT ATATTTAT AAAAACTACT chr2L:18556519-18556639 73 8.51e-04 AATATATACA ATATTTAT TTGAAATTCT chr3L:18297460-18297580 112 9.64e-04 GATGTTATTT TTATTTAT A chr3R:11617498-11617618 66 9.64e-04 TAAGCTCTTG TTATTTAT AACCTCGTAT chr3R:17049127-17049247 26 9.64e-04 AAAATTACGT TTATTTAT ATATAATAAA chr3L:110069-110189 60 9.64e-04 TTAAATATTT TTATTTAT TATTCATGTT chr3L:4272290-4272410 101 9.64e-04 GCTGCGTTCT TTATTTAT TCATTTGCCT chrX:10582177-10582297 50 1.07e-03 caACACGGCC GTGTGTGT CTGTCTGTGT chr3R:4846943-4847063 4 1.07e-03 TAA GTGTGTGT AATAATTTGC chr3L:6312223-6312343 58 1.07e-03 TATACCGTAC ATGTGTAT ATATGCATAA chr3R:29083917-29084037 90 1.18e-03 AAGTACTTAC ATATGTAC ACACAAACCA chr2L:14236281-14236401 65 1.18e-03 TAGTCGTCGT ATATGTAC ACAATATGTT chr3R:22161738-22161858 78 1.18e-03 CATAATCCAA ATATGTAC CCCAAAAAAG chr3L:19192010-19192130 1 1.21e-03 . TTATGTAC AGTAAAAATT chrX:3752055-3752175 35 1.21e-03 CAGATACACA TTATGTAC ACAAGGCGAT chr3R:15670657-15670777 78 1.22e-03 CACAGATACT GTGTGTAC ACACATATAC chr2R:22379312-22379432 39 1.34e-03 AGCAGGGAAA GTATGTGT TATAGAAATT chr2R:9421186-9421306 50 1.47e-03 CTTCACATGG TTGTTTGG ACAGTAAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9406847-9406967 1.9e-05 36_[+1]_76 chr3R:16276327-16276447 1.9e-05 111_[+1]_1 chr3L:8835053-8835173 1.9e-05 51_[+1]_61 chr2R:13305656-13305776 1.9e-05 19_[+1]_93 chr3L:16056365-16056485 1.9e-05 38_[+1]_74 chr3R:10169263-10169383 1.9e-05 64_[+1]_48 chr3L:20664124-20664244 3.8e-05 82_[+1]_30 chrX:7166492-7166612 3.8e-05 81_[+1]_31 chr2R:12458289-12458409 3.8e-05 26_[+1]_86 chr3R:31549223-31549343 3.8e-05 48_[+1]_64 chr2L:18625537-18625657 3.8e-05 19_[+1]_93 chr3R:30919045-30919165 3.8e-05 66_[+1]_46 chr3R:29548892-29549012 3.8e-05 37_[+1]_75 chr2R:12007848-12007968 3.8e-05 7_[+1]_105 chr3R:30812065-30812185 3.8e-05 76_[+1]_36 chr2R:8683524-8683644 3.8e-05 47_[+1]_65 chrX:19839282-19839402 3.8e-05 40_[+1]_72 chr2R:18436258-18436378 3.8e-05 59_[+1]_53 chrX:3396956-3397076 6.9e-05 72_[+1]_40 chr3R:29541497-29541617 6.9e-05 96_[+1]_16 chr3R:24293307-24293427 6.9e-05 72_[+1]_40 chr3R:8180479-8180599 6.9e-05 53_[+1]_59 chr3L:16640619-16640739 6.9e-05 41_[+1]_71 chr3R:17828826-17828946 6.9e-05 22_[+1]_90 chr3L:20915250-20915370 6.9e-05 6_[+1]_106 chr3L:8379306-8379426 6.9e-05 59_[+1]_53 chr2R:18608998-18609118 9.9e-05 72_[+1]_40 chr3L:8925802-8925922 9.9e-05 74_[+1]_38 chr3R:5016458-5016578 9.9e-05 5_[+1]_107 chr3L:14354664-14354784 9.9e-05 24_[+1]_88 chr2L:3577611-3577731 9.9e-05 18_[+1]_94 chrX:7579943-7580063 0.00013 80_[+1]_32 chr2L:16476745-16476865 0.00013 89_[+1]_23 chr3L:19040483-19040603 0.00013 93_[+1]_19 chr2L:10497542-10497662 0.00013 112_[+1] chr2R:18202728-18202848 0.00013 52_[+1]_60 chr3L:11317549-11317669 0.00013 23_[+1]_89 chr3R:31704667-31704787 0.00016 79_[+1]_33 chr3L:5947195-5947315 0.00016 7_[+1]_105 chr2L:8576651-8576771 0.00016 13_[+1]_99 chr3L:14274810-14274930 0.00016 15_[+1]_97 chr2R:16162583-16162703 0.00016 79_[+1]_33 chr3R:22878526-22878646 0.0002 11_[+1]_101 chrX:3967699-3967819 0.0002 33_[+1]_79 chr3R:10521307-10521427 0.0002 86_[+1]_26 chr2R:17086997-17087117 0.0002 37_[+1]_75 chrX:7552228-7552348 0.00025 51_[+1]_61 chr2R:10059090-10059210 0.00025 75_[+1]_37 chr3R:21865160-21865280 0.00025 82_[+1]_30 chr3R:14748781-14748901 0.00025 51_[+1]_61 chr2R:10212515-10212635 0.00025 92_[+1]_20 chr2R:8242624-8242744 0.00025 41_[+1]_71 chr3R:15667185-15667305 0.00025 67_[+1]_45 chr2L:6252346-6252466 0.00025 15_[+1]_97 chr2L:9189429-9189549 0.00025 12_[+1]_100 chr3R:28552389-28552509 0.00025 5_[+1]_107 chr2L:3570667-3570787 0.00025 103_[+1]_9 chr2L:12465820-12465940 0.00031 55_[+1]_57 chr3L:13232933-13233053 0.00031 107_[+1]_5 chr3L:20954232-20954352 0.00031 92_[+1]_20 chr3L:19184235-19184355 0.00031 81_[+1]_31 chr3L:7961338-7961458 0.00031 2_[+1]_110 chr3R:20548399-20548519 0.00031 76_[+1]_36 chr2L:16714007-16714127 0.00031 107_[+1]_5 chr2L:5881066-5881186 0.00031 16_[+1]_96 chrX:581985-582105 0.00031 79_[+1]_33 chr3L:3390742-3390862 0.00036 97_[+1]_15 chr3R:5320773-5320893 0.00036 56_[+1]_56 chrX:2462106-2462226 0.00036 48_[+1]_64 chr3L:20507695-20507815 0.00036 59_[+1]_53 chr2L:18335812-18335932 0.00036 14_[+1]_98 chr3R:14482077-14482197 0.00043 24_[+1]_88 chr2R:10485600-10485720 0.00043 75_[+1]_37 chr3L:12606464-12606584 0.00043 51_[+1]_61 chr2L:1738211-1738331 0.00043 60_[+1]_52 chr3L:4614061-4614181 0.00043 43_[+1]_69 chr3R:15677728-15677848 0.0005 62_[+1]_50 chr2L:3121884-3122004 0.0005 84_[+1]_28 chr2L:7628496-7628616 0.0005 8_[+1]_104 chr3L:11540378-11540498 0.0005 42_[+1]_70 chr2L:12457342-12457462 0.0005 12_[+1]_100 chr2L:18496948-18497068 0.0005 7_[+1]_105 chr3R:16285869-16285989 0.0005 73_[+1]_39 chr2R:12441410-12441530 0.0005 73_[+1]_39 chr3R:15983735-15983855 0.00058 17_[+1]_95 chrX:3136855-3136975 0.00058 33_[+1]_79 chr2R:14077586-14077706 0.00058 28_[+1]_84 chr2R:22403178-22403298 0.00058 68_[+1]_44 chrX:18238035-18238155 0.00058 74_[+1]_38 chr2L:22037035-22037155 0.00058 28_[+1]_84 chrX:3354497-3354617 0.00058 85_[+1]_27 chr3L:7996509-7996629 0.00058 7_[+1]_105 chr2L:15324216-15324336 0.00058 97_[+1]_15 chr2L:6595139-6595259 0.00065 69_[+1]_43 chr3R:21001257-21001377 0.00069 65_[+1]_47 chr3R:23803848-23803968 0.00072 61_[+1]_51 chr3R:5327987-5328107 0.00072 42_[+1]_70 chr3R:14386270-14386390 0.00085 27_[+1]_85 chr3R:20262870-20262990 0.00085 85_[+1]_27 chr3L:17404807-17404927 0.00085 111_[+1]_1 chr3R:9550419-9550539 0.00085 35_[+1]_77 chr3R:15664448-15664568 0.00085 6_[+1]_106 chr2L:14235087-14235207 0.00085 99_[+1]_13 chr2L:18556519-18556639 0.00085 72_[+1]_40 chr3L:18297460-18297580 0.00096 111_[+1]_1 chr3R:11617498-11617618 0.00096 65_[+1]_47 chr3R:17049127-17049247 0.00096 25_[+1]_87 chr3L:110069-110189 0.00096 59_[+1]_53 chr3L:4272290-4272410 0.00096 100_[+1]_12 chrX:10582177-10582297 0.0011 49_[+1]_63 chr3R:4846943-4847063 0.0011 3_[+1]_109 chr3L:6312223-6312343 0.0011 57_[+1]_55 chr3R:29083917-29084037 0.0012 89_[+1]_23 chr2L:14236281-14236401 0.0012 64_[+1]_48 chr3R:22161738-22161858 0.0012 77_[+1]_35 chr3L:19192010-19192130 0.0012 [+1]_112 chrX:3752055-3752175 0.0012 34_[+1]_78 chr3R:15670657-15670777 0.0012 77_[+1]_35 chr2R:22379312-22379432 0.0013 38_[+1]_74 chr2R:9421186-9421306 0.0015 49_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTRTTTRY width=8 seqs=120 chr2R:9406847-9406967 ( 37) ATGTTTGC 1 chr3R:16276327-16276447 ( 112) ATGTTTGC 1 chr3L:8835053-8835173 ( 52) ATGTTTGC 1 chr2R:13305656-13305776 ( 20) ATGTTTGC 1 chr3L:16056365-16056485 ( 39) ATGTTTGC 1 chr3R:10169263-10169383 ( 65) ATGTTTGC 1 chr3L:20664124-20664244 ( 83) TTGTTTGC 1 chrX:7166492-7166612 ( 82) TTGTTTGC 1 chr2R:12458289-12458409 ( 27) TTGTTTGC 1 chr3R:31549223-31549343 ( 49) TTGTTTGC 1 chr2L:18625537-18625657 ( 20) TTGTTTGC 1 chr3R:30919045-30919165 ( 67) TTGTTTGC 1 chr3R:29548892-29549012 ( 38) TTGTTTGC 1 chr2R:12007848-12007968 ( 8) TTGTTTGC 1 chr3R:30812065-30812185 ( 77) TTGTTTGC 1 chr2R:8683524-8683644 ( 48) TTGTTTGC 1 chrX:19839282-19839402 ( 41) TTGTTTGC 1 chr2R:18436258-18436378 ( 60) TTGTTTGC 1 chrX:3396956-3397076 ( 73) ATGTTTGT 1 chr3R:29541497-29541617 ( 97) ATGTTTGT 1 chr3R:24293307-24293427 ( 73) ATGTTTGT 1 chr3R:8180479-8180599 ( 54) ATGTTTGT 1 chr3L:16640619-16640739 ( 42) ATGTTTGT 1 chr3R:17828826-17828946 ( 23) ATGTTTGT 1 chr3L:20915250-20915370 ( 7) ATGTTTGT 1 chr3L:8379306-8379426 ( 60) ATGTTTGT 1 chr2R:18608998-18609118 ( 73) TTGTTTGT 1 chr3L:8925802-8925922 ( 75) TTGTTTGT 1 chr3R:5016458-5016578 ( 6) TTGTTTGT 1 chr3L:14354664-14354784 ( 25) TTGTTTGT 1 chr2L:3577611-3577731 ( 19) TTGTTTGT 1 chrX:7579943-7580063 ( 81) ATATTTGC 1 chr2L:16476745-16476865 ( 90) ATATTTGC 1 chr3L:19040483-19040603 ( 94) ATATTTGC 1 chr2L:10497542-10497662 ( 113) ATATTTGC 1 chr2R:18202728-18202848 ( 53) ATATTTGC 1 chr3L:11317549-11317669 ( 24) ATATTTGC 1 chr3R:31704667-31704787 ( 80) TTATTTGC 1 chr3L:5947195-5947315 ( 8) TTATTTGC 1 chr2L:8576651-8576771 ( 14) TTATTTGC 1 chr3L:14274810-14274930 ( 16) TTATTTGC 1 chr2R:16162583-16162703 ( 80) TTATTTGC 1 chr3R:22878526-22878646 ( 12) ATGTTTAC 1 chrX:3967699-3967819 ( 34) ATGTTTAC 1 chr3R:10521307-10521427 ( 87) GTGTTTGC 1 chr2R:17086997-17087117 ( 38) ATGTTTAC 1 chrX:7552228-7552348 ( 52) ATGTGTGC 1 chr2R:10059090-10059210 ( 76) TTGTTTAC 1 chr3R:21865160-21865280 ( 83) TTGTTTAC 1 chr3R:14748781-14748901 ( 52) TTGTTTAC 1 chr2R:10212515-10212635 ( 93) TTGTTTAC 1 chr2R:8242624-8242744 ( 42) TTGTTTAC 1 chr3R:15667185-15667305 ( 68) TTGTTTAC 1 chr2L:6252346-6252466 ( 16) TTGTTTAC 1 chr2L:9189429-9189549 ( 13) TTGTTTAC 1 chr3R:28552389-28552509 ( 6) ATGTGTGC 1 chr2L:3570667-3570787 ( 104) TTGTTTAC 1 chr2L:12465820-12465940 ( 56) ATATTTGT 1 chr3L:13232933-13233053 ( 108) ATATTTGT 1 chr3L:20954232-20954352 ( 93) ATATTTGT 1 chr3L:19184235-19184355 ( 82) ATATTTGT 1 chr3L:7961338-7961458 ( 3) ATATTTGT 1 chr3R:20548399-20548519 ( 77) ATATTTGT 1 chr2L:16714007-16714127 ( 108) TTGTGTGC 1 chr2L:5881066-5881186 ( 17) ATATTTGT 1 chrX:581985-582105 ( 80) ATATTTGT 1 chr3L:3390742-3390862 ( 98) TTATTTGT 1 chr3R:5320773-5320893 ( 57) TTATTTGT 1 chrX:2462106-2462226 ( 49) TTATTTGT 1 chr3L:20507695-20507815 ( 60) TTATTTGT 1 chr2L:18335812-18335932 ( 15) TTATTTGT 1 chr3R:14482077-14482197 ( 25) GTGTTTGT 1 chr2R:10485600-10485720 ( 76) ATGTTTAT 1 chr3L:12606464-12606584 ( 52) GTGTTTGT 1 chr2L:1738211-1738331 ( 61) ATGTTTAT 1 chr3L:4614061-4614181 ( 44) ATGTTTAT 1 chr3R:15677728-15677848 ( 63) TTGTTTAT 1 chr2L:3121884-3122004 ( 85) TTGTTTAT 1 chr2L:7628496-7628616 ( 9) ATGTGTGT 1 chr3L:11540378-11540498 ( 43) ATGTGTGT 1 chr2L:12457342-12457462 ( 13) ATGTGTGT 1 chr2L:18496948-18497068 ( 8) ATGTGTGT 1 chr3R:16285869-16285989 ( 74) TTGTTTAT 1 chr2R:12441410-12441530 ( 74) TTGTTTAT 1 chr3R:15983735-15983855 ( 18) ATATTTAC 1 chrX:3136855-3136975 ( 34) GTATTTGC 1 chr2R:14077586-14077706 ( 29) ATATTTAC 1 chr2R:22403178-22403298 ( 69) ATATTTAC 1 chrX:18238035-18238155 ( 75) ATATTTAC 1 chr2L:22037035-22037155 ( 29) ATATTTAC 1 chrX:3354497-3354617 ( 86) ATATTTAC 1 chr3L:7996509-7996629 ( 8) TTGTGTGT 1 chr2L:15324216-15324336 ( 98) ATATTTAC 1 chr2L:6595139-6595259 ( 70) TTATTTAC 1 chr3R:21001257-21001377 ( 66) GTGTTTAC 1 chr3R:23803848-23803968 ( 62) GTGTGTGC 1 chr3R:5327987-5328107 ( 43) GTGTGTGC 1 chr3R:14386270-14386390 ( 28) GTATTTGT 1 chr3R:20262870-20262990 ( 86) ATATTTAT 1 chr3L:17404807-17404927 ( 112) ATATTTAT 1 chr3R:9550419-9550539 ( 36) GTATTTGT 1 chr3R:15664448-15664568 ( 7) ATATTTAT 1 chr2L:14235087-14235207 ( 100) ATATTTAT 1 chr2L:18556519-18556639 ( 73) ATATTTAT 1 chr3L:18297460-18297580 ( 112) TTATTTAT 1 chr3R:11617498-11617618 ( 66) TTATTTAT 1 chr3R:17049127-17049247 ( 26) TTATTTAT 1 chr3L:110069-110189 ( 60) TTATTTAT 1 chr3L:4272290-4272410 ( 101) TTATTTAT 1 chrX:10582177-10582297 ( 50) GTGTGTGT 1 chr3R:4846943-4847063 ( 4) GTGTGTGT 1 chr3L:6312223-6312343 ( 58) ATGTGTAT 1 chr3R:29083917-29084037 ( 90) ATATGTAC 1 chr2L:14236281-14236401 ( 65) ATATGTAC 1 chr3R:22161738-22161858 ( 78) ATATGTAC 1 chr3L:19192010-19192130 ( 1) TTATGTAC 1 chrX:3752055-3752175 ( 35) TTATGTAC 1 chr3R:15670657-15670777 ( 78) GTGTGTAC 1 chr2R:22379312-22379432 ( 39) GTATGTGT 1 chr2R:9421186-9421306 ( 50) TTGTTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.58245 E= 4.7e-017 57 -1355 -82 47 -1355 -1355 -1355 171 44 -1355 158 -1355 -1355 -1355 -1355 171 -1355 -1355 -20 145 -1355 -1355 -1355 171 26 -1355 171 -1355 -1355 147 -452 61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 120 E= 4.7e-017 0.466667 0.000000 0.108333 0.425000 0.000000 0.000000 0.000000 1.000000 0.425000 0.000000 0.575000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.375000 0.000000 0.625000 0.000000 0.000000 0.525000 0.008333 0.466667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTRTTTRY MEME-1 regular expression -------------------------------------------------------------------------------- [AT]T[GA]TTT[GA][CT] -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF RRYAAAYA MEME-2 width = 8 sites = 122 llr = 837 E-value = 1.9e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRYAAAYA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 531aaa:a pos.-specific C ::5:::5: probability G 46:::::: matrix T 2:4:::5: bits 2.4 2.2 1.9 1.7 *** * Relative 1.4 *** * Entropy 1.2 *** * (9.9 bits) 1.0 * ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGCAAACA consensus GAT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRYAAAYA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18608998-18609118 112 1.26e-05 TTGTTGAAGA GGCAAACA A chr2R:10238134-10238254 69 1.26e-05 AGACTTCTAC GGcaaaca cacacacatg chr3R:21835671-21835791 80 1.26e-05 ACACGGCGGC GGCAAACA CTTTGACCTT chr2R:11541226-11541346 57 1.26e-05 CTTGCAAACT GGCAAACA AATCAAGAAC chr3R:6664500-6664620 41 1.26e-05 CCCGCTCGCG GGCAAACA AACTAAGCAA chr2L:20327533-20327653 88 1.26e-05 CTGACCGTTA GGCAAACA ATGAACAATT chr3L:8835053-8835173 68 1.26e-05 GCCTTCGCCG GGCAAACA CTTATGTAGc chr2L:18556519-18556639 51 1.26e-05 GTTACCATAA GGCAAACA AATGAATATA chr3L:8379306-8379426 70 1.26e-05 ATGTTTGTCG GGCAAACA ATGGGGCGGA chr2R:11403200-11403320 58 1.26e-05 AAAAGTAGAA GGCAAACA AACTGGATGT chr3L:18242255-18242375 7 5.37e-05 GTTCTG GGCAAATA GTGCAGGCAG chr2R:6573391-6573511 113 5.37e-05 TTGCTTACGG AGCAAACA chr3R:5320773-5320893 96 5.37e-05 CGCCAACTTG AGCAAACA AACAGCAGTA chr2R:14077586-14077706 93 5.37e-05 CAACTCGTAC AGcaaaca aacaaacaaa chr3R:10354076-10354196 11 5.37e-05 CTAGTGTTAT GGCAAATA CAGAAACATA chr3R:31549223-31549343 25 5.37e-05 AATTGTTGTA GGCAAATA TTTAACTAAT chr2R:10212515-10212635 75 5.37e-05 TCGAAAGGAA GGCAAATA TTGGGTGAAA chr3L:19184235-19184355 36 5.37e-05 GTGCATTCGG GGCAAATA TAAATATTTA chr3R:23302314-23302434 73 5.37e-05 AGGTCTGGCT GGCAAATA GCAGCGAATG chr3L:6312223-6312343 11 5.37e-05 aacaagccaa agcaaaca gataaacagc chr3L:14274810-14274930 53 5.37e-05 ATTTGCCGCC GGCAAATA TTTAAAAGGT chrX:15618030-15618150 66 5.37e-05 AATTAAGAGT GGCAAATA TTGCAGTTAC chr2R:14486947-14487067 57 5.37e-05 TTACCCACAA GGCAAATA TCAACAGAGC chr3L:20915250-20915370 63 5.37e-05 ACTATTTGCG AGCAAACA ATGGCAAACC chr2R:9406847-9406967 57 1.08e-04 TTGGGTGGAA GGTAAACA ACAACAATGA chr2R:14494771-14494891 73 1.08e-04 TTGTTGACTG GGTAAACA TCGAAGAAAG chr3L:19674462-19674582 37 1.08e-04 CCATATTTAA AGCAAATA AACTAAAAGA chrX:3967699-3967819 76 1.08e-04 ATAAATAGCA AGCAAATA GTCAATATTT chrX:15497852-15497972 38 1.08e-04 GAGCAAAATA AGCAAATA AAGCCGTCTC chr3L:18198272-18198392 97 1.08e-04 TAAACTAAAT GGTAAACA AATATTGGAG chr3L:17993417-17993537 50 1.08e-04 CGGCACGCCA GGTAAACA AGAGAGAAAA chrX:13633404-13633524 59 1.08e-04 ACATACCGGT AGCAAATA GAACACCCAA chrX:3832379-3832499 75 1.28e-04 caaacaggca gacaaaca aacaaacggt chr2L:6291837-6291957 42 1.95e-04 CTTTATCGAA AGTAAACA AACAGCGTGA chr2L:3548991-3549111 84 1.95e-04 TCGCACAATT GGTAAATA CCGTGGGTGA chr2L:20935498-20935618 55 1.95e-04 GGAGTAATAA GGTAAATA TATGCTCAGC chrX:10115674-10115794 46 1.95e-04 TTGATCATTG GGTAAATA TCAACAAGCG chr3R:24293307-24293427 39 1.95e-04 ATATTTTTTC AGTAAACA CAATTGATTG chr3R:9550419-9550539 44 1.95e-04 GGGTATTTGT GGTAAATA TTATTATAAA chr2L:6826471-6826591 85 1.95e-04 CCGACCGATA AGTAAACA AGAGCCAACC chr3R:19822305-19822425 31 1.95e-04 GTTTGACTTG AGTAAACA ACAATTTCTA chr3R:15664448-15664568 57 1.95e-04 TGTTACATTT GGTAAATA AAAGATATAT chrX:12889253-12889373 80 1.95e-04 GAAGGGGAGA AGTAAACA AAGGCGACGA chr3R:21001257-21001377 77 1.95e-04 TGTTTACCAG GGTAAATA TTGTTTAAAG chr2R:9421186-9421306 60 1.95e-04 TTGTTTGGAC AGTAAACA TGAGTTTGGC chr2R:7951911-7952031 71 1.95e-04 TCCTCACACA GGTAAATA TGGAATACGA chr2L:3570667-3570787 33 1.95e-04 TCAGTGGTTA AGTAAACA CAGCTCACAC chr2R:17274152-17274272 21 2.15e-04 CGCACACCAA TGCAAACA CGATTACAAC chr2R:23180945-23181065 71 2.15e-04 ATTTGTAAAA TGCAAACA GAACACGCAA chr3L:11286751-11286871 78 2.15e-04 CACCGTCTAG TGCAAACA GACTGTTTGA chr3R:6765044-6765164 23 2.15e-04 CGTCGGCTTG TGCAAACA CACATTAATA chr3L:11273639-11273759 113 2.82e-04 CCAAAGGAAA AACAAACA chrX:3136855-3136975 70 2.82e-04 CTAATCACTG AACAAACA Ccgaatcgta chr2R:7167937-7168057 32 2.82e-04 TTTAATAATA AACAAACA CGAGCACAAA chrX:13645192-13645312 30 2.82e-04 CAAATTTACC AACAAACA AAGCAACAAC chr3L:4614061-4614181 92 2.82e-04 ACAAAATTTG AACAAACA GCAGGGAGTG chr3R:16285869-16285989 15 2.82e-04 TAAGTCACCC AACAAACA CACAAGTAAC chr2R:18436258-18436378 12 2.82e-04 ACGAAGCCAA AACAAACA GAAATACACA chr3R:5761103-5761223 25 2.82e-04 ACAACAAGTT GACAAATA TGTAATATGC chr3L:12606464-12606584 23 3.36e-04 TTGAGAAGTG AGTAAATA AGTATGTTTC chr3R:30812065-30812185 93 3.36e-04 GCAGTTCTTG AGTAAATA CTAAACCACC chr3R:8155888-8156008 95 3.36e-04 ATATATACCG AGTAAATA GATTCTCCCC chr2L:7519081-7519201 71 3.68e-04 TTTTATCATA TGCAAATA GACGAACAAA chr2R:8242624-8242744 52 3.68e-04 TTGTTTACAA TGCAAATA AATTGAGATC chr3R:29548892-29549012 90 3.68e-04 ACATTTGCCA TGCAAATA AGCCCGGCTT chr2R:14787881-14788001 35 3.68e-04 TGGGACATAA TGCAAATA TTGACAATGT chr3R:21865160-21865280 92 4.56e-04 GTTGTTTACT AACAAATA TAAACTTAAG chr2L:14236281-14236401 111 4.56e-04 GAATGATATA AACAAATA TT chr3R:14748781-14748901 99 4.56e-04 ACAGTGCGTA AACAAATA AAAACAAAGC chr3L:21961970-21962090 74 4.56e-04 CATGTCGGAC AACAAATA AACAACCCAA chr3L:13068399-13068519 76 4.56e-04 AAACCTTTTG GATAAACA TATTTTTGAT chr3R:17655131-17655251 6 4.56e-04 GTCAA AACAAATA TTTAATAACC chr3L:19056929-19057049 28 4.56e-04 taaataaatt aacaaata aatGTCATAA chr2L:12457342-12457462 69 4.56e-04 atgtgtgtTA AACAAATA TCACAATCGA chr2L:18496948-18497068 69 4.56e-04 GAAATCGTTG GATAAACA TGAAACAGTT chr2L:11341036-11341156 88 4.56e-04 AAAGGGTGAA AACAAATA AGAAGATTTA chr2L:3577611-3577731 105 4.56e-04 GCACTCGAGC GATAAACA TCGGTACA chr3R:5327987-5328107 61 4.56e-04 AAGCAGTGAA AACAAATA TGCATCTTCT chr2R:16162583-16162703 111 4.56e-04 TACAAATATC AACAAATA TA chrX:7552228-7552348 29 4.77e-04 ATTACACTTG GGAAAACA ATCGATGGAC chrX:4609880-4610000 111 4.77e-04 GTTGTCGCTG GGAAAACA AC chr2L:3600967-3601087 103 4.77e-04 CATTGCTGCT GGAAAACA GCTGAAAATC chr3R:6665437-6665557 72 5.10e-04 TGACAATCAA TGTAAACA CCACAGTCGC chr2R:7473822-7473942 78 5.10e-04 GCACGGCAAA TGTAAACA ACACTGACAC chr3R:29083917-29084037 60 6.18e-04 ACATAAAACG AATAAACA ACGAACGGAC chr2L:7628496-7628616 46 6.18e-04 TTTGGGCAGA AATAAACA ACTGAGTCAA chr3L:16640619-16640739 69 6.18e-04 CACTGGGTGC AATAAACA TAAATAATAA chr3R:21823175-21823295 38 6.18e-04 GTTTTCCTTT GATAAATA CCCACTGCAT chrX:3354497-3354617 12 6.18e-04 GATAATCACA AATAAACA CCAAACTTGC chr2L:15465245-15465365 39 6.18e-04 TGGCAATAAC AATAAACA CAATAAAGTT chr3L:16056365-16056485 49 6.18e-04 ATGTTTGCTT GATAAATA AGTGGAGGGA chr3L:18297460-18297580 9 7.19e-04 ATGCACTG GGAAAATA TCAGTCAGAA chr3L:19192010-19192130 38 7.19e-04 TATATTGACT GGAAAATA AATACAAATA chr3L:14354664-14354784 35 7.19e-04 TTGTTTGTTG AGAAAACA AAGCTAATAG chr2L:6595139-6595259 44 7.19e-04 AAAACAGAAC GGAAAATA TTCTTCatat chr3L:17937438-17937558 6 7.19e-04 GGCAA AGAAAACA AGACAAAAAT chr2L:14673839-14673959 33 7.19e-04 AGATGTGCTG GGAAAATA AATAGAGCAC chr3L:7996509-7996629 31 7.31e-04 TGAGCAACAA GCCAAACA TGTTGAACAA chr3L:1742696-1742816 37 7.31e-04 GTCAACAATG GCCAAACA AGTGCTCGAG chr2L:10497542-10497662 32 7.84e-04 CATCAACCTA TGTAAATA TGTGGCCAAA chr2R:21888941-21889061 97 7.84e-04 GTATAGTCCG TGTAAATA CTGTAGCATT chr2L:5338790-5338910 53 7.84e-04 TAATACAAAA TGTAAATA TGATTACCCT chr2L:470083-470203 7 7.84e-04 TGGCTC TGTAAATA TCTGAGTGTT chrX:3396956-3397076 62 8.72e-04 TACCATATAA AATAAATA TATATGTTTG chr2L:14235087-14235207 88 8.72e-04 AAATAATTTA AATAAATA TAATATATTT chr2L:8558713-8558833 75 8.72e-04 TCCAGCGCTA AATAAATA TGAGACATTT chr3L:2468510-2468630 5 8.72e-04 AAAA AATAAATA CCTATTGGTT chr2R:12441410-12441530 17 8.72e-04 GATCGTGGCC AATAAATA TTTGGGCATC chr3R:29265273-29265393 58 9.81e-04 ATACTTTTAC TACAAATA TCATGAAATC chrX:10582177-10582297 82 9.81e-04 AAACTAAACA AGAAAATA TTGACATATA chr3L:110069-110189 91 9.81e-04 AGCACTGAAG AGAAAATA TTTGGAAACT chr3R:20548399-20548519 103 9.81e-04 TCATCTGCAA TACAAATA CAATCATGGT chr2L:6818509-6818629 38 9.81e-04 TTGTAAATTA TACAAATA ACGATCAACA chr2R:20091298-20091418 21 1.02e-03 AAAAAAATAT GCCAAATA AAATGATTTA chrX:6937604-6937724 28 1.02e-03 GGTGAAAAAG ACCAAACA TGGACACAGT chr2R:12007848-12007968 89 1.06e-03 GCAGGCAGTG GAAAaaca gaaccaaacc chr2R:10485600-10485720 47 1.11e-03 GTTGAATACA TATAAACA CAGCTTCCGG chr3R:5016458-5016578 49 1.11e-03 ATATTTTCCA TATAAACA CTCGGCTGCT chr3L:17404807-17404927 43 1.19e-03 ATAGCTTGCA ACCAAATA TAGATTTTTA chr3R:15667185-15667305 42 1.19e-03 TTTAATTATA ACCAAATA CTAGTTGAGG chr2L:18930870-18930990 27 1.31e-03 ACTGCACTGG AAAAAACA CTTTCTGCTG chr2R:13474997-13475117 8 1.31e-03 GTTAAAA AAAAAACA AAAAGATTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRYAAAYA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18608998-18609118 1.3e-05 111_[+2]_1 chr2R:10238134-10238254 1.3e-05 68_[+2]_44 chr3R:21835671-21835791 1.3e-05 79_[+2]_33 chr2R:11541226-11541346 1.3e-05 56_[+2]_56 chr3R:6664500-6664620 1.3e-05 40_[+2]_72 chr2L:20327533-20327653 1.3e-05 87_[+2]_25 chr3L:8835053-8835173 1.3e-05 67_[+2]_45 chr2L:18556519-18556639 1.3e-05 50_[+2]_62 chr3L:8379306-8379426 1.3e-05 69_[+2]_43 chr2R:11403200-11403320 1.3e-05 57_[+2]_55 chr3L:18242255-18242375 5.4e-05 6_[+2]_106 chr2R:6573391-6573511 5.4e-05 112_[+2] chr3R:5320773-5320893 5.4e-05 95_[+2]_17 chr2R:14077586-14077706 5.4e-05 92_[+2]_20 chr3R:10354076-10354196 5.4e-05 10_[+2]_102 chr3R:31549223-31549343 5.4e-05 24_[+2]_88 chr2R:10212515-10212635 5.4e-05 74_[+2]_38 chr3L:19184235-19184355 5.4e-05 35_[+2]_77 chr3R:23302314-23302434 5.4e-05 72_[+2]_40 chr3L:6312223-6312343 5.4e-05 10_[+2]_102 chr3L:14274810-14274930 5.4e-05 52_[+2]_60 chrX:15618030-15618150 5.4e-05 65_[+2]_47 chr2R:14486947-14487067 5.4e-05 56_[+2]_56 chr3L:20915250-20915370 5.4e-05 62_[+2]_50 chr2R:9406847-9406967 0.00011 56_[+2]_56 chr2R:14494771-14494891 0.00011 72_[+2]_40 chr3L:19674462-19674582 0.00011 36_[+2]_76 chrX:3967699-3967819 0.00011 75_[+2]_37 chrX:15497852-15497972 0.00011 37_[+2]_75 chr3L:18198272-18198392 0.00011 96_[+2]_16 chr3L:17993417-17993537 0.00011 49_[+2]_63 chrX:13633404-13633524 0.00011 58_[+2]_54 chrX:3832379-3832499 0.00013 74_[+2]_38 chr2L:6291837-6291957 0.00019 41_[+2]_71 chr2L:3548991-3549111 0.00019 83_[+2]_29 chr2L:20935498-20935618 0.00019 54_[+2]_58 chrX:10115674-10115794 0.00019 45_[+2]_67 chr3R:24293307-24293427 0.00019 38_[+2]_74 chr3R:9550419-9550539 0.00019 43_[+2]_69 chr2L:6826471-6826591 0.00019 84_[+2]_28 chr3R:19822305-19822425 0.00019 30_[+2]_82 chr3R:15664448-15664568 0.00019 56_[+2]_56 chrX:12889253-12889373 0.00019 79_[+2]_33 chr3R:21001257-21001377 0.00019 76_[+2]_36 chr2R:9421186-9421306 0.00019 59_[+2]_53 chr2R:7951911-7952031 0.00019 70_[+2]_42 chr2L:3570667-3570787 0.00019 32_[+2]_80 chr2R:17274152-17274272 0.00021 20_[+2]_92 chr2R:23180945-23181065 0.00021 70_[+2]_42 chr3L:11286751-11286871 0.00021 77_[+2]_35 chr3R:6765044-6765164 0.00021 22_[+2]_90 chr3L:11273639-11273759 0.00028 112_[+2] chrX:3136855-3136975 0.00028 69_[+2]_43 chr2R:7167937-7168057 0.00028 31_[+2]_81 chrX:13645192-13645312 0.00028 29_[+2]_83 chr3L:4614061-4614181 0.00028 91_[+2]_21 chr3R:16285869-16285989 0.00028 14_[+2]_98 chr2R:18436258-18436378 0.00028 11_[+2]_101 chr3R:5761103-5761223 0.00028 24_[+2]_88 chr3L:12606464-12606584 0.00034 22_[+2]_90 chr3R:30812065-30812185 0.00034 92_[+2]_20 chr3R:8155888-8156008 0.00034 94_[+2]_18 chr2L:7519081-7519201 0.00037 70_[+2]_42 chr2R:8242624-8242744 0.00037 51_[+2]_61 chr3R:29548892-29549012 0.00037 89_[+2]_23 chr2R:14787881-14788001 0.00037 34_[+2]_78 chr3R:21865160-21865280 0.00046 91_[+2]_21 chr2L:14236281-14236401 0.00046 110_[+2]_2 chr3R:14748781-14748901 0.00046 98_[+2]_14 chr3L:21961970-21962090 0.00046 73_[+2]_39 chr3L:13068399-13068519 0.00046 75_[+2]_37 chr3R:17655131-17655251 0.00046 5_[+2]_107 chr3L:19056929-19057049 0.00046 27_[+2]_85 chr2L:12457342-12457462 0.00046 68_[+2]_44 chr2L:18496948-18497068 0.00046 68_[+2]_44 chr2L:11341036-11341156 0.00046 87_[+2]_25 chr2L:3577611-3577731 0.00046 104_[+2]_8 chr3R:5327987-5328107 0.00046 60_[+2]_52 chr2R:16162583-16162703 0.00046 110_[+2]_2 chrX:7552228-7552348 0.00048 28_[+2]_84 chrX:4609880-4610000 0.00048 110_[+2]_2 chr2L:3600967-3601087 0.00048 102_[+2]_10 chr3R:6665437-6665557 0.00051 71_[+2]_41 chr2R:7473822-7473942 0.00051 77_[+2]_35 chr3R:29083917-29084037 0.00062 59_[+2]_53 chr2L:7628496-7628616 0.00062 45_[+2]_67 chr3L:16640619-16640739 0.00062 68_[+2]_44 chr3R:21823175-21823295 0.00062 37_[+2]_75 chrX:3354497-3354617 0.00062 11_[+2]_101 chr2L:15465245-15465365 0.00062 38_[+2]_74 chr3L:16056365-16056485 0.00062 48_[+2]_64 chr3L:18297460-18297580 0.00072 8_[+2]_104 chr3L:19192010-19192130 0.00072 37_[+2]_75 chr3L:14354664-14354784 0.00072 34_[+2]_78 chr2L:6595139-6595259 0.00072 43_[+2]_69 chr3L:17937438-17937558 0.00072 5_[+2]_107 chr2L:14673839-14673959 0.00072 32_[+2]_80 chr3L:7996509-7996629 0.00073 30_[+2]_82 chr3L:1742696-1742816 0.00073 36_[+2]_76 chr2L:10497542-10497662 0.00078 31_[+2]_81 chr2R:21888941-21889061 0.00078 96_[+2]_16 chr2L:5338790-5338910 0.00078 52_[+2]_60 chr2L:470083-470203 0.00078 6_[+2]_106 chrX:3396956-3397076 0.00087 61_[+2]_51 chr2L:14235087-14235207 0.00087 87_[+2]_25 chr2L:8558713-8558833 0.00087 74_[+2]_38 chr3L:2468510-2468630 0.00087 4_[+2]_108 chr2R:12441410-12441530 0.00087 16_[+2]_96 chr3R:29265273-29265393 0.00098 57_[+2]_55 chrX:10582177-10582297 0.00098 81_[+2]_31 chr3L:110069-110189 0.00098 90_[+2]_22 chr3R:20548399-20548519 0.00098 102_[+2]_10 chr2L:6818509-6818629 0.00098 37_[+2]_75 chr2R:20091298-20091418 0.001 20_[+2]_92 chrX:6937604-6937724 0.001 27_[+2]_85 chr2R:12007848-12007968 0.0011 88_[+2]_24 chr2R:10485600-10485720 0.0011 46_[+2]_66 chr3R:5016458-5016578 0.0011 48_[+2]_64 chr3L:17404807-17404927 0.0012 42_[+2]_70 chr3R:15667185-15667305 0.0012 41_[+2]_71 chr2L:18930870-18930990 0.0013 26_[+2]_86 chr2R:13474997-13475117 0.0013 7_[+2]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRYAAAYA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRYAAAYA width=8 seqs=122 chr2R:18608998-18609118 ( 112) GGCAAACA 1 chr2R:10238134-10238254 ( 69) GGCAAACA 1 chr3R:21835671-21835791 ( 80) GGCAAACA 1 chr2R:11541226-11541346 ( 57) GGCAAACA 1 chr3R:6664500-6664620 ( 41) GGCAAACA 1 chr2L:20327533-20327653 ( 88) GGCAAACA 1 chr3L:8835053-8835173 ( 68) GGCAAACA 1 chr2L:18556519-18556639 ( 51) GGCAAACA 1 chr3L:8379306-8379426 ( 70) GGCAAACA 1 chr2R:11403200-11403320 ( 58) GGCAAACA 1 chr3L:18242255-18242375 ( 7) GGCAAATA 1 chr2R:6573391-6573511 ( 113) AGCAAACA 1 chr3R:5320773-5320893 ( 96) AGCAAACA 1 chr2R:14077586-14077706 ( 93) AGCAAACA 1 chr3R:10354076-10354196 ( 11) GGCAAATA 1 chr3R:31549223-31549343 ( 25) GGCAAATA 1 chr2R:10212515-10212635 ( 75) GGCAAATA 1 chr3L:19184235-19184355 ( 36) GGCAAATA 1 chr3R:23302314-23302434 ( 73) GGCAAATA 1 chr3L:6312223-6312343 ( 11) AGCAAACA 1 chr3L:14274810-14274930 ( 53) GGCAAATA 1 chrX:15618030-15618150 ( 66) GGCAAATA 1 chr2R:14486947-14487067 ( 57) GGCAAATA 1 chr3L:20915250-20915370 ( 63) AGCAAACA 1 chr2R:9406847-9406967 ( 57) GGTAAACA 1 chr2R:14494771-14494891 ( 73) GGTAAACA 1 chr3L:19674462-19674582 ( 37) AGCAAATA 1 chrX:3967699-3967819 ( 76) AGCAAATA 1 chrX:15497852-15497972 ( 38) AGCAAATA 1 chr3L:18198272-18198392 ( 97) GGTAAACA 1 chr3L:17993417-17993537 ( 50) GGTAAACA 1 chrX:13633404-13633524 ( 59) AGCAAATA 1 chrX:3832379-3832499 ( 75) GACAAACA 1 chr2L:6291837-6291957 ( 42) AGTAAACA 1 chr2L:3548991-3549111 ( 84) GGTAAATA 1 chr2L:20935498-20935618 ( 55) GGTAAATA 1 chrX:10115674-10115794 ( 46) GGTAAATA 1 chr3R:24293307-24293427 ( 39) AGTAAACA 1 chr3R:9550419-9550539 ( 44) GGTAAATA 1 chr2L:6826471-6826591 ( 85) AGTAAACA 1 chr3R:19822305-19822425 ( 31) AGTAAACA 1 chr3R:15664448-15664568 ( 57) GGTAAATA 1 chrX:12889253-12889373 ( 80) AGTAAACA 1 chr3R:21001257-21001377 ( 77) GGTAAATA 1 chr2R:9421186-9421306 ( 60) AGTAAACA 1 chr2R:7951911-7952031 ( 71) GGTAAATA 1 chr2L:3570667-3570787 ( 33) AGTAAACA 1 chr2R:17274152-17274272 ( 21) TGCAAACA 1 chr2R:23180945-23181065 ( 71) TGCAAACA 1 chr3L:11286751-11286871 ( 78) TGCAAACA 1 chr3R:6765044-6765164 ( 23) TGCAAACA 1 chr3L:11273639-11273759 ( 113) AACAAACA 1 chrX:3136855-3136975 ( 70) AACAAACA 1 chr2R:7167937-7168057 ( 32) AACAAACA 1 chrX:13645192-13645312 ( 30) AACAAACA 1 chr3L:4614061-4614181 ( 92) AACAAACA 1 chr3R:16285869-16285989 ( 15) AACAAACA 1 chr2R:18436258-18436378 ( 12) AACAAACA 1 chr3R:5761103-5761223 ( 25) GACAAATA 1 chr3L:12606464-12606584 ( 23) AGTAAATA 1 chr3R:30812065-30812185 ( 93) AGTAAATA 1 chr3R:8155888-8156008 ( 95) AGTAAATA 1 chr2L:7519081-7519201 ( 71) TGCAAATA 1 chr2R:8242624-8242744 ( 52) TGCAAATA 1 chr3R:29548892-29549012 ( 90) TGCAAATA 1 chr2R:14787881-14788001 ( 35) TGCAAATA 1 chr3R:21865160-21865280 ( 92) AACAAATA 1 chr2L:14236281-14236401 ( 111) AACAAATA 1 chr3R:14748781-14748901 ( 99) AACAAATA 1 chr3L:21961970-21962090 ( 74) AACAAATA 1 chr3L:13068399-13068519 ( 76) GATAAACA 1 chr3R:17655131-17655251 ( 6) AACAAATA 1 chr3L:19056929-19057049 ( 28) AACAAATA 1 chr2L:12457342-12457462 ( 69) AACAAATA 1 chr2L:18496948-18497068 ( 69) GATAAACA 1 chr2L:11341036-11341156 ( 88) AACAAATA 1 chr2L:3577611-3577731 ( 105) GATAAACA 1 chr3R:5327987-5328107 ( 61) AACAAATA 1 chr2R:16162583-16162703 ( 111) AACAAATA 1 chrX:7552228-7552348 ( 29) GGAAAACA 1 chrX:4609880-4610000 ( 111) GGAAAACA 1 chr2L:3600967-3601087 ( 103) GGAAAACA 1 chr3R:6665437-6665557 ( 72) TGTAAACA 1 chr2R:7473822-7473942 ( 78) TGTAAACA 1 chr3R:29083917-29084037 ( 60) AATAAACA 1 chr2L:7628496-7628616 ( 46) AATAAACA 1 chr3L:16640619-16640739 ( 69) AATAAACA 1 chr3R:21823175-21823295 ( 38) GATAAATA 1 chrX:3354497-3354617 ( 12) AATAAACA 1 chr2L:15465245-15465365 ( 39) AATAAACA 1 chr3L:16056365-16056485 ( 49) GATAAATA 1 chr3L:18297460-18297580 ( 9) GGAAAATA 1 chr3L:19192010-19192130 ( 38) GGAAAATA 1 chr3L:14354664-14354784 ( 35) AGAAAACA 1 chr2L:6595139-6595259 ( 44) GGAAAATA 1 chr3L:17937438-17937558 ( 6) AGAAAACA 1 chr2L:14673839-14673959 ( 33) GGAAAATA 1 chr3L:7996509-7996629 ( 31) GCCAAACA 1 chr3L:1742696-1742816 ( 37) GCCAAACA 1 chr2L:10497542-10497662 ( 32) TGTAAATA 1 chr2R:21888941-21889061 ( 97) TGTAAATA 1 chr2L:5338790-5338910 ( 53) TGTAAATA 1 chr2L:470083-470203 ( 7) TGTAAATA 1 chrX:3396956-3397076 ( 62) AATAAATA 1 chr2L:14235087-14235207 ( 88) AATAAATA 1 chr2L:8558713-8558833 ( 75) AATAAATA 1 chr3L:2468510-2468630 ( 5) AATAAATA 1 chr2R:12441410-12441530 ( 17) AATAAATA 1 chr3R:29265273-29265393 ( 58) TACAAATA 1 chrX:10582177-10582297 ( 82) AGAAAATA 1 chr3L:110069-110189 ( 91) AGAAAATA 1 chr3R:20548399-20548519 ( 103) TACAAATA 1 chr2L:6818509-6818629 ( 38) TACAAATA 1 chr2R:20091298-20091418 ( 21) GCCAAATA 1 chrX:6937604-6937724 ( 28) ACCAAACA 1 chr2R:12007848-12007968 ( 89) GAAAAACA 1 chr2R:10485600-10485720 ( 47) TATAAACA 1 chr3R:5016458-5016578 ( 49) TATAAACA 1 chr3L:17404807-17404927 ( 43) ACCAAATA 1 chr3R:15667185-15667305 ( 42) ACCAAATA 1 chr2L:18930870-18930990 ( 27) AAAAAACA 1 chr2R:13474997-13475117 ( 8) AAAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRYAAAYA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.56683 E= 1.9e-016 52 -1357 104 -97 14 -194 166 -1357 -145 147 -1357 24 167 -1357 -1357 -1357 167 -1357 -1357 -1357 167 -1357 -1357 -1357 -1357 140 -1357 71 167 -1357 -1357 -1357 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRYAAAYA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 122 E= 1.9e-016 0.450820 0.000000 0.393443 0.155738 0.344262 0.049180 0.606557 0.000000 0.114754 0.524590 0.000000 0.360656 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRYAAAYA MEME-2 regular expression -------------------------------------------------------------------------------- [AG][GA][CT]AAA[CT]A -------------------------------------------------------------------------------- Time 13.48 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCGGG MEME-3 width = 8 sites = 15 llr = 152 E-value = 3.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2::1:1 pos.-specific C :3::9:12 probability G a78a:997 matrix T ::::1::: bits 2.4 * * 2.2 * * 1.9 * * ** 1.7 * **** Relative 1.4 ******* Entropy 1.2 ******* (14.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCGGG consensus CA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7553633-7553753 31 1.82e-06 CCAATGGATG GGGGCGGG GTCGTAAAGG chr3L:7962454-7962574 69 1.82e-06 GGAGAGGAAG GGGGCGGG CCTCTGTTGA chr2R:14494771-14494891 54 3.61e-06 GAACTACTGT GCGGCGGG GTTGTTGACT chr2L:19370211-19370331 50 3.61e-06 GAAAAGGGCG GCGGCGGG GTGACGACAA chr2L:3548991-3549111 104 8.36e-06 GTGGGTGAAG GGAGCGGG GCATATAAT chr2R:7473822-7473942 58 8.36e-06 GTCGTGAGCG GGAGCGGG TGGCACGGCA chr3L:3390742-3390862 2 1.13e-05 A GGGGCGGA GCAGGCGGCT chr3L:8379306-8379426 80 1.13e-05 GGCAAACAAT GGGGCGGA GATGGAGAtg chr2L:20716183-20716303 43 1.31e-05 ACTCGTCTTT GCGGCGGC GACGTCTTCT chr3L:17937438-17937558 79 1.31e-05 TTCATTTCAA GCGGCGGC TCTACCAtct chr3R:6665437-6665557 11 1.60e-05 CCATCTTGAG GGGGTGGG TGGGACGTTG chr2R:11582122-11582242 58 1.60e-05 GTTCGTTTGA GGGGTGGG ATTAACAGTC chr3R:24031091-24031211 50 1.78e-05 TTGTTGTGAT GGGGCGCG CGCTGCAACT chr2L:6091355-6091475 94 2.66e-05 GAAAACCTCG GGAGCGGC GATGTGAACA chr2R:14787881-14788001 99 2.66e-05 AGGGTATGGA GGGGCAGG GGCATCGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7553633-7553753 1.8e-06 30_[+3]_82 chr3L:7962454-7962574 1.8e-06 68_[+3]_44 chr2R:14494771-14494891 3.6e-06 53_[+3]_59 chr2L:19370211-19370331 3.6e-06 49_[+3]_63 chr2L:3548991-3549111 8.4e-06 103_[+3]_9 chr2R:7473822-7473942 8.4e-06 57_[+3]_55 chr3L:3390742-3390862 1.1e-05 1_[+3]_111 chr3L:8379306-8379426 1.1e-05 79_[+3]_33 chr2L:20716183-20716303 1.3e-05 42_[+3]_70 chr3L:17937438-17937558 1.3e-05 78_[+3]_34 chr3R:6665437-6665557 1.6e-05 10_[+3]_102 chr2R:11582122-11582242 1.6e-05 57_[+3]_55 chr3R:24031091-24031211 1.8e-05 49_[+3]_63 chr2L:6091355-6091475 2.7e-05 93_[+3]_19 chr2R:14787881-14788001 2.7e-05 98_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCGGG width=8 seqs=15 chrX:7553633-7553753 ( 31) GGGGCGGG 1 chr3L:7962454-7962574 ( 69) GGGGCGGG 1 chr2R:14494771-14494891 ( 54) GCGGCGGG 1 chr2L:19370211-19370331 ( 50) GCGGCGGG 1 chr2L:3548991-3549111 ( 104) GGAGCGGG 1 chr2R:7473822-7473942 ( 58) GGAGCGGG 1 chr3L:3390742-3390862 ( 2) GGGGCGGA 1 chr3L:8379306-8379426 ( 80) GGGGCGGA 1 chr2L:20716183-20716303 ( 43) GCGGCGGC 1 chr3L:17937438-17937558 ( 79) GCGGCGGC 1 chr3R:6665437-6665557 ( 11) GGGGTGGG 1 chr2R:11582122-11582242 ( 58) GGGGTGGG 1 chr3R:24031091-24031211 ( 50) GGGGCGCG 1 chr2L:6091355-6091475 ( 94) GGAGCGGC 1 chr2R:14787881-14788001 ( 99) GGGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1534 E= 3.1e+001 -1055 -1055 238 -1055 -1055 50 194 -1055 -65 -1055 206 -1055 -1055 -1055 238 -1055 -1055 220 -1055 -120 -223 -1055 228 -1055 -1055 -150 228 -1055 -123 8 180 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.1e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.733333 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.000000 0.133333 0.066667 0.000000 0.933333 0.000000 0.000000 0.066667 0.933333 0.000000 0.133333 0.200000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGGG MEME-3 regular expression -------------------------------------------------------------------------------- G[GC][GA]GCGG[GC] -------------------------------------------------------------------------------- Time 19.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGGCYGC MEME-4 width = 8 sites = 5 llr = 60 E-value = 6.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGGCYGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::a6:a probability G ::aa::a: matrix T a::::4:: bits 2.4 **** ** 2.2 **** ** 1.9 **** ** 1.7 ***** ** Relative 1.4 ***** ** Entropy 1.2 ******** (17.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGGCCGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCYGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20716183-20716303 108 2.76e-06 TGTCGGCATG TCGGCCGC TCGTG chrX:12889253-12889373 59 2.76e-06 TGGGGCACAG TCGGCCGC TTTGAAGGGG chr2L:470083-470203 64 2.76e-06 ATCAATAGGC TCGGCCGC CTGTCATACA chr3R:5016458-5016578 58 7.24e-06 ATATAAACAC TCGGCTGC TTGTGCTCCT chrX:581985-582105 93 7.24e-06 TTTGTTCAAC TCGGCTGC CTTCGACGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCYGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20716183-20716303 2.8e-06 107_[+4]_5 chrX:12889253-12889373 2.8e-06 58_[+4]_54 chr2L:470083-470203 2.8e-06 63_[+4]_49 chr3R:5016458-5016578 7.2e-06 57_[+4]_55 chrX:581985-582105 7.2e-06 92_[+4]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCYGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGGCYGC width=8 seqs=5 chr2L:20716183-20716303 ( 108) TCGGCCGC 1 chrX:12889253-12889373 ( 59) TCGGCCGC 1 chr2L:470083-470203 ( 64) TCGGCCGC 1 chr3R:5016458-5016578 ( 58) TCGGCTGC 1 chrX:581985-582105 ( 93) TCGGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCYGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9987 E= 6.3e+003 -897 -897 -897 171 -897 240 -897 -897 -897 -897 238 -897 -897 -897 238 -897 -897 240 -897 -897 -897 166 -897 39 -897 -897 238 -897 -897 240 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCYGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.3e+003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCYGC MEME-4 regular expression -------------------------------------------------------------------------------- TCGGC[CT]GC -------------------------------------------------------------------------------- Time 25.07 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCTGCAG MEME-5 width = 8 sites = 8 llr = 90 E-value = 7.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCTGCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::8: pos.-specific C 6:a::a:: probability G 4a::a:3a matrix T :::a:::: bits 2.4 ** ** * 2.2 ** ** * 1.9 ** ** * 1.7 ***** * Relative 1.4 ****** * Entropy 1.2 ****** * (16.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCTGCAG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14971975-14972095 52 4.58e-06 AGAGCAACTA CGCTGCAG TGAGTGTGGA chr3R:6665437-6665557 87 4.58e-06 ACACCACAGT CGCTGCAG CAGAATTTAG chr3R:5112072-5112192 47 4.58e-06 CTGTATAATT CGCTGCAG TTGTTCCCCC chr2R:8683524-8683644 2 4.58e-06 T CGCTGCAG TGTTTACTGT chr2L:12457342-12457462 104 9.23e-06 ACAAAACGGC GGCTGCAG CAGATTAAC chr3L:19192010-19192130 111 9.23e-06 CCTCGAAAAC GGCTGCAG TT chr3R:24031091-24031211 98 1.20e-05 TGTATGTACG CGCTGCGG AATCTGTTGC chr3L:3141508-3141628 104 1.49e-05 TGGTTCATCT GGCTGCGG GATGGGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14971975-14972095 4.6e-06 51_[+5]_61 chr3R:6665437-6665557 4.6e-06 86_[+5]_26 chr3R:5112072-5112192 4.6e-06 46_[+5]_66 chr2R:8683524-8683644 4.6e-06 1_[+5]_111 chr2L:12457342-12457462 9.2e-06 103_[+5]_9 chr3L:19192010-19192130 9.2e-06 110_[+5]_2 chr3R:24031091-24031211 1.2e-05 97_[+5]_15 chr3L:3141508-3141628 1.5e-05 103_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCTGCAG width=8 seqs=8 chr3L:14971975-14972095 ( 52) CGCTGCAG 1 chr3R:6665437-6665557 ( 87) CGCTGCAG 1 chr3R:5112072-5112192 ( 47) CGCTGCAG 1 chr2R:8683524-8683644 ( 2) CGCTGCAG 1 chr2L:12457342-12457462 ( 104) GGCTGCAG 1 chr3L:19192010-19192130 ( 111) GGCTGCAG 1 chr3R:24031091-24031211 ( 98) CGCTGCGG 1 chr3L:3141508-3141628 ( 104) GGCTGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 7.5e+003 -965 172 97 -965 -965 -965 238 -965 -965 240 -965 -965 -965 -965 -965 171 -965 -965 238 -965 -965 240 -965 -965 126 -965 38 -965 -965 -965 238 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 7.5e+003 0.000000 0.625000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCTGCAG MEME-5 regular expression -------------------------------------------------------------------------------- [CG]GCTGC[AG]G -------------------------------------------------------------------------------- Time 30.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22161738-22161858 1.61e-02 37_[+4(9.14e-05)]_75 chrX:581985-582105 1.12e-04 13_[+3(5.72e-05)]_71_[+4(7.24e-06)]_\ 20 chr2R:12441410-12441530 5.27e-02 120 chrX:13633404-13633524 1.83e-02 120 chr3L:17993417-17993537 2.11e-01 120 chr2R:14787881-14788001 1.04e-02 98_[+3(2.66e-05)]_14 chr2L:19370211-19370331 2.01e-04 49_[+3(3.61e-06)]_63 chr2L:15324216-15324336 2.42e-01 120 chr2R:11403200-11403320 3.92e-02 57_[+2(1.26e-05)]_55 chr3L:8379306-8379426 4.91e-05 59_[+1(6.88e-05)]_2_[+2(1.26e-05)]_\ 2_[+3(1.13e-05)]_33 chr2L:18556519-18556639 1.09e-02 50_[+2(1.26e-05)]_62 chr2L:5881066-5881186 9.16e-02 120 chrX:3832379-3832499 7.48e-02 120 chr2L:3570667-3570787 1.19e-01 120 chr2L:16714007-16714127 2.98e-01 120 chr2L:4365057-4365177 5.73e-02 120 chrX:6937604-6937724 6.16e-01 120 chr2L:6818509-6818629 1.67e-01 120 chr2L:14673839-14673959 3.41e-01 120 chr3R:5761103-5761223 1.04e-01 120 chr2R:7951911-7952031 1.84e-02 120 chr3R:10169263-10169383 2.22e-02 64_[+1(1.91e-05)]_48 chr3L:18198272-18198392 3.00e-02 120 chr2R:18436258-18436378 3.36e-02 59_[+1(3.78e-05)]_53 chr3L:20915250-20915370 6.74e-03 6_[+1(6.88e-05)]_48_[+2(5.37e-05)]_\ 50 chr3R:28552389-28552509 1.18e-01 120 chr3L:16056365-16056485 3.37e-02 38_[+1(1.91e-05)]_74 chr3R:20548399-20548519 1.44e-01 120 chr2R:16162583-16162703 1.74e-02 120 chr2L:470083-470203 2.57e-03 63_[+4(2.76e-06)]_49 chr3L:7961338-7961458 4.14e-02 120 chr2L:5338790-5338910 7.04e-01 120 chr2L:15465245-15465365 5.55e-01 120 chr3R:19821061-19821181 9.07e-01 120 chr3R:21835471-21835591 9.57e-01 120 chr2R:22158061-22158181 6.55e-01 120 chr2R:21848642-21848762 7.50e-01 120 chr2R:9421186-9421306 2.94e-02 120 chr3R:16907938-16908058 9.29e-01 120 chr2R:14486947-14487067 2.26e-01 56_[+2(5.37e-05)]_56 chr3L:17937438-17937558 9.79e-04 78_[+3(1.31e-05)]_34 chr2L:5379036-5379156 9.45e-01 120 chr3R:10498692-10498812 4.83e-01 120 chr3R:6765044-6765164 4.33e-02 120 chr3L:4272290-4272410 1.53e-02 44_[+4(9.14e-05)]_68 chr3L:11486104-11486224 4.15e-01 120 chr3L:11317549-11317669 2.36e-01 120 chr3L:2468510-2468630 5.88e-01 120 chrX:15618030-15618150 1.01e-01 65_[+2(5.37e-05)]_47 chr3L:14274810-14274930 2.88e-03 52_[+2(5.37e-05)]_60 chr3L:17033415-17033535 7.62e-01 120 chr3R:8155888-8156008 1.59e-01 120 chr3L:110069-110189 1.75e-02 120 chr2R:13305656-13305776 1.30e-02 19_[+1(1.91e-05)]_41_[+1(9.90e-05)]_\ 44 chr2R:17086997-17087117 1.02e-01 120 chr3R:5327987-5328107 1.48e-01 120 chrX:15497852-15497972 6.33e-02 120 chr2R:21888941-21889061 2.83e-02 120 chr3R:21001257-21001377 6.63e-02 120 chr2L:8558713-8558833 2.68e-01 120 chrX:19839282-19839402 1.90e-02 40_[+1(3.78e-05)]_72 chr3L:6312223-6312343 1.48e-02 10_[+2(5.37e-05)]_102 chr2L:14235087-14235207 1.14e-01 120 chrX:12889253-12889373 3.55e-04 58_[+4(2.76e-06)]_54 chr2R:8683524-8683644 7.94e-04 1_[+5(4.58e-06)]_38_[+1(3.78e-05)]_\ 65 chr3L:19694145-19694265 8.05e-02 120 chr3L:3141508-3141628 5.06e-03 103_[+5(1.49e-05)]_9 chr2R:18202728-18202848 1.46e-01 120 chr3L:1742696-1742816 1.37e-01 120 chr2L:3577611-3577731 5.05e-02 18_[+1(9.90e-05)]_94 chrX:3752055-3752175 1.76e-01 120 chr3R:15664448-15664568 2.18e-01 120 chr2L:6595139-6595259 3.33e-01 120 chr2L:11341036-11341156 4.58e-01 120 chr3L:7996509-7996629 7.84e-03 120 chr2L:18335812-18335932 7.90e-03 53_[+4(9.14e-05)]_59 chr3R:9215651-9215771 1.35e-02 120 chr2R:22379312-22379432 4.03e-01 120 chr3R:31712686-31712806 7.48e-01 120 chr3R:16285869-16285989 2.25e-01 120 chr3R:10521307-10521427 3.53e-01 120 chr3L:18357791-18357911 3.47e-01 120 chr3L:8544002-8544122 9.07e-01 120 chr2L:8576651-8576771 3.72e-01 120 chr3L:20507695-20507815 2.53e-01 120 chr3L:5947195-5947315 1.56e-01 120 chr3R:23302314-23302434 1.28e-01 72_[+2(5.37e-05)]_40 chr3R:30812065-30812185 6.08e-03 76_[+1(3.78e-05)]_36 chrX:3354497-3354617 1.12e-02 120 chr2L:9189429-9189549 2.69e-02 120 chr3L:5017719-5017839 7.91e-01 120 chr2R:12007848-12007968 2.43e-03 7_[+1(3.78e-05)]_105 chr2L:6252346-6252466 1.31e-02 120 chrX:14234599-14234719 2.31e-01 120 chr2L:18496948-18497068 1.05e-02 120 chr3R:24768135-24768255 7.26e-01 120 chr2L:10505017-10505137 3.01e-02 110_[+3(5.43e-05)]_2 chr3L:14354664-14354784 9.53e-03 24_[+1(9.90e-05)]_88 chr3R:21834407-21834527 9.66e-01 120 chr3R:15667185-15667305 4.15e-02 120 chr3L:4614061-4614181 3.14e-02 120 chr3R:5112072-5112192 8.53e-03 46_[+5(4.58e-06)]_66 chr3R:17049127-17049247 5.32e-01 120 chr2L:5338118-5338238 1.76e-01 120 chr3L:3882175-3882295 9.00e-01 120 chr2R:9200820-9200940 9.43e-02 1_[+4(9.14e-05)]_111 chr2L:1738211-1738331 4.38e-01 120 chr3L:8835053-8835173 7.28e-04 51_[+1(1.91e-05)]_8_[+2(1.26e-05)]_\ 45 chr2L:8080822-8080942 5.46e-01 120 chr2L:1723116-1723236 6.67e-01 120 chr3R:8197248-8197368 6.44e-01 120 chr2R:14009804-14009924 4.57e-01 120 chrX:17357493-17357613 4.23e-01 120 chr3L:295172-295292 4.73e-01 120 chr3R:16082528-16082648 2.30e-02 29_[+4(9.14e-05)]_83 chrX:3967699-3967819 3.90e-02 120 chr3L:19192010-19192130 2.57e-04 110_[+5(9.23e-06)]_2 chr3R:17828826-17828946 1.46e-01 22_[+1(6.88e-05)]_90 chrX:2462106-2462226 2.12e-01 120 chr3R:24031091-24031211 1.81e-04 49_[+3(1.78e-05)]_40_[+5(1.20e-05)]_\ 15 chr3R:19822305-19822425 8.23e-02 120 chr2R:23798541-23798661 9.29e-01 120 chr2R:7473822-7473942 4.97e-03 57_[+3(8.36e-06)]_55 chrX:768784-768904 9.42e-02 120 chr2L:10497542-10497662 8.86e-03 120 chr3R:5016458-5016578 1.21e-04 5_[+1(9.90e-05)]_44_[+4(7.24e-06)]_\ 36_[+1(6.88e-05)]_11 chr2L:12457342-12457462 9.36e-06 103_[+5(9.23e-06)]_9 chr2R:13474997-13475117 8.65e-01 120 chr3L:6352362-6352482 1.58e-01 120 chr3L:19056929-19057049 7.01e-01 120 chr3R:16276327-16276447 2.76e-02 88_[+1(1.91e-05)]_15_[+1(1.91e-05)]_\ 1 chr3L:11286751-11286871 3.26e-01 120 chr3R:21823175-21823295 3.12e-01 120 chr2L:22037035-22037155 1.40e-02 23_[+2(5.37e-05)]_89 chr3L:19184235-19184355 1.78e-02 35_[+2(5.37e-05)]_77 chr2L:6826471-6826591 2.23e-01 120 chrX:13645192-13645312 1.65e-01 120 chr3R:15670657-15670777 2.76e-01 120 chr2L:3841121-3841241 4.88e-01 120 chr2L:20327533-20327653 5.41e-03 87_[+2(1.26e-05)]_25 chr2L:6091355-6091475 1.93e-02 93_[+3(2.66e-05)]_19 chr3R:9550419-9550539 1.83e-01 120 chr2R:23180945-23181065 5.74e-02 120 chr3R:29548892-29549012 2.04e-03 37_[+1(3.78e-05)]_75 chr2R:17274152-17274272 5.02e-01 120 chr3R:30919045-30919165 2.03e-01 66_[+1(3.78e-05)]_46 chr3L:19674462-19674582 2.94e-01 120 chr3R:17655131-17655251 1.64e-01 120 chrX:18238035-18238155 4.08e-01 120 chr2L:18930870-18930990 2.80e-01 120 chr3L:16640619-16640739 2.21e-02 41_[+1(6.88e-05)]_71 chr3L:20954232-20954352 1.68e-01 120 chr3R:30733283-30733403 8.94e-01 120 chr3R:6664500-6664620 7.77e-04 40_[+2(1.26e-05)]_5_[+2(5.37e-05)]_\ 59 chr2R:8242624-8242744 1.84e-02 120 chr2L:18625537-18625657 2.21e-01 19_[+1(3.78e-05)]_93 chr2R:22403178-22403298 1.42e-02 28_[+3(5.43e-05)]_84 chr3L:380924-381044 9.15e-01 120 chr2R:10212515-10212635 2.69e-02 74_[+2(5.37e-05)]_38 chr3R:8180479-8180599 1.65e-01 53_[+1(6.88e-05)]_59 chr3L:13232933-13233053 1.22e-01 120 chr3R:31549223-31549343 1.49e-02 24_[+2(5.37e-05)]_16_[+1(3.78e-05)]_\ 64 chr3R:24293307-24293427 4.02e-04 72_[+1(6.88e-05)]_40 chrX:10115674-10115794 1.17e-01 120 chr2R:7167937-7168057 7.06e-03 95_[+4(9.14e-05)]_17 chr3L:17532305-17532425 5.82e-02 120 chr3R:10354076-10354196 2.64e-01 10_[+2(5.37e-05)]_102 chr3L:8925802-8925922 3.54e-01 74_[+1(9.90e-05)]_38 chr3L:13068399-13068519 4.21e-01 120 chr2R:6603137-6603257 3.58e-01 120 chr2R:14077586-14077706 6.12e-03 92_[+2(5.37e-05)]_20 chr2L:20935498-20935618 1.86e-01 120 chr3L:19040483-19040603 2.99e-01 120 chr2L:18871862-18871982 7.64e-01 120 chr3L:21961970-21962090 3.10e-02 120 chr2R:11541226-11541346 8.91e-03 8_[+2(5.37e-05)]_40_[+2(1.26e-05)]_\ 56 chr2R:11582122-11582242 2.59e-02 57_[+3(1.60e-05)]_55 chr3R:11617498-11617618 6.49e-01 120 chr2L:3548991-3549111 1.82e-03 103_[+3(8.36e-06)]_9 chr2R:6607589-6607709 2.46e-02 120 chr3R:6665437-6665557 8.20e-05 10_[+3(1.60e-05)]_68_[+5(4.58e-06)]_\ 26 chr3R:14748781-14748901 9.87e-03 120 chrX:3136855-3136975 6.87e-03 120 chr3R:29541497-29541617 1.25e-01 96_[+1(6.88e-05)]_16 chr2L:3600967-3601087 1.58e-01 120 chr3L:18297460-18297580 2.38e-01 120 chr3R:5320773-5320893 3.20e-02 95_[+2(5.37e-05)]_17 chr2R:12458289-12458409 8.06e-02 26_[+1(3.78e-05)]_86 chr3L:15672949-15673069 9.25e-01 120 chr2R:20091298-20091418 7.66e-01 120 chr3L:15706322-15706442 8.53e-02 120 chr3L:15199329-15199449 9.26e-01 120 chrX:4609880-4610000 2.15e-01 120 chr3L:11273639-11273759 6.33e-01 120 chr2R:14803426-14803546 9.66e-01 120 chr2R:6119004-6119124 2.82e-01 120 chr2R:14494771-14494891 2.79e-04 53_[+3(3.61e-06)]_59 chr3L:15794441-15794561 9.66e-01 120 chrX:3396956-3397076 4.56e-02 72_[+1(6.88e-05)]_40 chr3L:12606464-12606584 4.78e-02 120 chr2R:6573391-6573511 2.48e-02 112_[+2(5.37e-05)] chr3L:3978113-3978233 6.38e-01 120 chr3L:20613036-20613156 8.72e-01 120 chr2L:16476745-16476865 1.95e-01 120 chrX:4581897-4582017 9.75e-01 120 chr3L:3390742-3390862 1.84e-03 1_[+3(1.13e-05)]_111 chr3L:11540378-11540498 4.38e-02 120 chr3R:23803848-23803968 3.25e-01 120 chr3R:21835671-21835791 1.56e-05 64_[+2(5.37e-05)]_7_[+2(1.26e-05)]_\ 33 chr2L:7293613-7293733 2.57e-01 120 chr3R:15983735-15983855 4.58e-01 120 chr2L:7566807-7566927 1.09e-01 120 chr3R:6949473-6949593 9.80e-01 120 chr3L:18242255-18242375 2.85e-01 6_[+2(5.37e-05)]_34_[+2(5.37e-05)]_\ 64 chr2L:14236281-14236401 3.61e-01 120 chr2L:7277101-7277221 2.33e-01 120 chr3L:3873168-3873288 9.67e-01 120 chr2L:7628496-7628616 1.52e-02 120 chr2R:14971224-14971344 9.68e-01 120 chr2R:10238134-10238254 5.72e-04 47_[+2(5.37e-05)]_13_[+2(1.26e-05)]_\ 44 chr2R:10485600-10485720 1.11e-01 120 chr3L:17404807-17404927 3.86e-01 120 chrX:7579943-7580063 5.91e-03 120 chr3R:21865160-21865280 9.35e-02 120 chr3R:20262870-20262990 5.05e-01 120 chr2R:10059090-10059210 2.63e-02 120 chr2L:3121884-3122004 2.61e-01 120 chr3R:29083917-29084037 3.01e-01 120 chr3L:7962454-7962574 1.57e-02 68_[+3(1.82e-06)]_44 chrX:7553633-7553753 5.50e-03 30_[+3(1.82e-06)]_82 chr2R:18608998-18609118 5.34e-03 68_[+1(9.90e-05)]_35_[+2(1.26e-05)]_\ 1 chr2L:20716183-20716303 1.13e-04 42_[+3(1.31e-05)]_57_[+4(2.76e-06)]_\ 5 chr2L:6291837-6291957 3.54e-02 120 chr3R:15677728-15677848 4.09e-01 120 chrX:7552228-7552348 1.30e-01 120 chr2R:9406847-9406967 5.50e-03 36_[+1(1.91e-05)]_76 chrX:7166492-7166612 5.75e-02 81_[+1(3.78e-05)]_31 chr3R:31704667-31704787 3.11e-01 120 chr3L:905117-905237 8.39e-01 120 chr2L:7519081-7519201 1.52e-01 120 chr3R:4846943-4847063 6.68e-01 120 chr2L:12465820-12465940 2.28e-02 120 chr3R:13404968-13405088 9.48e-01 120 chr3R:14386270-14386390 8.48e-01 120 chrX:10582177-10582297 1.12e-02 120 chr3L:20664124-20664244 3.55e-02 82_[+1(3.78e-05)]_30 chr3R:29265273-29265393 3.53e-01 120 chr3L:14971975-14972095 6.54e-03 51_[+5(4.58e-06)]_61 chr3R:22878526-22878646 3.57e-01 120 chr3R:14482077-14482197 6.36e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************