******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2120.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:1043717-1043837 1.0000 120 chrX:8141431-8141551 1.0000 120 chr3L:7760126-7760246 1.0000 120 chr2R:20270966-20271086 1.0000 120 chrX:13676610-13676730 1.0000 120 chr2L:3058884-3059004 1.0000 120 chr3R:26556060-26556180 1.0000 120 chr3R:10699200-10699320 1.0000 120 chr2R:12290143-12290263 1.0000 120 chr2L:3755262-3755382 1.0000 120 chr3R:7500672-7500792 1.0000 120 chrX:8145642-8145762 1.0000 120 chr3R:8524420-8524540 1.0000 120 chr3R:26494417-26494537 1.0000 120 chrX:10250816-10250936 1.0000 120 chr3L:13244318-13244438 1.0000 120 chr3L:3492479-3492599 1.0000 120 chr3R:11460930-11461050 1.0000 120 chr3L:16160086-16160206 1.0000 120 chr2R:11044573-11044693 1.0000 120 chr3R:7821704-7821824 1.0000 120 chr3L:16885192-16885312 1.0000 120 chr2L:2723261-2723381 1.0000 120 chr3R:10688958-10689078 1.0000 120 chrX:16671231-16671351 1.0000 120 chr3L:9691272-9691392 1.0000 120 chr3L:10362537-10362657 1.0000 120 chr3R:17526205-17526325 1.0000 120 chr3R:8930245-8930365 1.0000 120 chrX:3273702-3273822 1.0000 120 chr3L:1629548-1629668 1.0000 120 chr3R:31630499-31630619 1.0000 120 chr3R:25968675-25968795 1.0000 120 chr3L:2913399-2913519 1.0000 120 chr2R:10013345-10013465 1.0000 120 chr3L:12874334-12874454 1.0000 120 chr3R:26952312-26952432 1.0000 120 chr3L:3544282-3544402 1.0000 120 chr3R:31636664-31636784 1.0000 120 chr3R:10380183-10380303 1.0000 120 chr2L:19141026-19141146 1.0000 120 chr3L:17941775-17941895 1.0000 120 chr3R:23228775-23228895 1.0000 120 chr2R:22737969-22738089 1.0000 120 chrX:20434680-20434800 1.0000 120 chr2R:17161014-17161134 1.0000 120 chr3L:1609780-1609900 1.0000 120 chr2R:16911869-16911989 1.0000 120 chrX:3005906-3006026 1.0000 120 chrX:18468020-18468140 1.0000 120 chr3R:21852662-21852782 1.0000 120 chr2L:9779245-9779365 1.0000 120 chr2R:7615540-7615660 1.0000 120 chr3R:10024177-10024297 1.0000 120 chr3L:12409118-12409238 1.0000 120 chr3R:23337391-23337511 1.0000 120 chr3L:3970533-3970653 1.0000 120 chr3L:8177946-8178066 1.0000 120 chr2R:23154670-23154790 1.0000 120 chr2R:7242969-7243089 1.0000 120 chr3R:23191514-23191634 1.0000 120 chrX:15120201-15120321 1.0000 120 chr3R:9938648-9938768 1.0000 120 chr2L:7047889-7048009 1.0000 120 chrX:19348955-19349075 1.0000 120 chr2L:7443100-7443220 1.0000 120 chr2R:8670091-8670211 1.0000 120 chr3R:17777048-17777168 1.0000 120 chr2R:22616874-22616994 1.0000 120 chr3R:17818943-17819063 1.0000 120 chrX:15304398-15304518 1.0000 120 chr2L:1207613-1207733 1.0000 120 chr3L:16146645-16146765 1.0000 120 chr2L:4224220-4224340 1.0000 120 chr2L:8894384-8894504 1.0000 120 chr2L:5569648-5569768 1.0000 120 chr2L:9864438-9864558 1.0000 120 chr3R:18438844-18438964 1.0000 120 chr2L:937056-937176 1.0000 120 chr2R:21091978-21092098 1.0000 120 chr2L:3938944-3939064 1.0000 120 chr3R:30325610-30325730 1.0000 120 chr2L:11199179-11199299 1.0000 120 chr2R:22033378-22033498 1.0000 120 chr3R:12083685-12083805 1.0000 120 chr3R:30134766-30134886 1.0000 120 chr2L:7494388-7494508 1.0000 120 chrX:6090980-6091100 1.0000 120 chrX:10184780-10184900 1.0000 120 chr3L:8284808-8284928 1.0000 120 chr3L:11402439-11402559 1.0000 120 chrX:23010757-23010877 1.0000 120 chr2L:13461100-13461220 1.0000 120 chr3R:26280491-26280611 1.0000 120 chr3L:3940642-3940762 1.0000 120 chr2R:14136879-14136999 1.0000 120 chrX:10757828-10757948 1.0000 120 chr2L:243972-244092 1.0000 120 chr3L:3760760-3760880 1.0000 120 chr2L:17204009-17204129 1.0000 120 chr2L:1158270-1158390 1.0000 120 chrX:966925-967045 1.0000 120 chr3L:11785442-11785562 1.0000 120 chr2R:14604312-14604432 1.0000 120 chr2L:18119773-18119893 1.0000 120 chrX:11550196-11550316 1.0000 120 chr3L:9697333-9697453 1.0000 120 chr3L:3770946-3771066 1.0000 120 chr2R:8650588-8650708 1.0000 120 chr3R:26121209-26121329 1.0000 120 chr2R:23202123-23202243 1.0000 120 chr3R:26333418-26333538 1.0000 120 chrX:17696814-17696934 1.0000 120 chr2R:14247584-14247704 1.0000 120 chr3L:20827313-20827433 1.0000 120 chrX:13817570-13817690 1.0000 120 chrX:22449404-22449524 1.0000 120 chr2L:18707971-18708091 1.0000 120 chr3R:27289761-27289881 1.0000 120 chr3L:9468385-9468505 1.0000 120 chr3R:16355549-16355669 1.0000 120 chr2L:1218170-1218290 1.0000 120 chr2L:20079033-20079153 1.0000 120 chrX:13333073-13333193 1.0000 120 chr3L:3411863-3411983 1.0000 120 chrX:18494293-18494413 1.0000 120 chr3R:23941779-23941899 1.0000 120 chr3L:9838667-9838787 1.0000 120 chr3R:13446685-13446805 1.0000 120 chr2R:15155098-15155218 1.0000 120 chr2L:11203737-11203857 1.0000 120 chr2L:6088952-6089072 1.0000 120 chrX:19964366-19964486 1.0000 120 chr2R:6781860-6781980 1.0000 120 chr3L:16310123-16310243 1.0000 120 chr2L:8461939-8462059 1.0000 120 chr3R:14351562-14351682 1.0000 120 chr2R:22789398-22789518 1.0000 120 chr2R:24292855-24292975 1.0000 120 chrX:5745148-5745268 1.0000 120 chr3R:16704378-16704498 1.0000 120 chrX:8273896-8274016 1.0000 120 chr2L:3477357-3477477 1.0000 120 chr2R:8734634-8734754 1.0000 120 chr2L:19019200-19019320 1.0000 120 chr2R:24893692-24893812 1.0000 120 chr3R:22628057-22628177 1.0000 120 chr2L:12542128-12542248 1.0000 120 chrX:14169196-14169316 1.0000 120 chr2R:24629563-24629683 1.0000 120 chr3L:8763279-8763399 1.0000 120 chrX:16781236-16781356 1.0000 120 chrX:947635-947755 1.0000 120 chrX:13376666-13376786 1.0000 120 chr3L:21011374-21011494 1.0000 120 chr3R:5065124-5065244 1.0000 120 chr3L:10866769-10866889 1.0000 120 chr2L:16271105-16271225 1.0000 120 chr2L:14141390-14141510 1.0000 120 chr3L:1151758-1151878 1.0000 120 chr2R:7987794-7987914 1.0000 120 chr2L:5209887-5210007 1.0000 120 chr2L:3042208-3042328 1.0000 120 chr2L:14359107-14359227 1.0000 120 chr3R:22447449-22447569 1.0000 120 chr2L:13882073-13882193 1.0000 120 chr3L:20389125-20389245 1.0000 120 chr2R:16202897-16203017 1.0000 120 chr2R:7653910-7654030 1.0000 120 chr3L:3450642-3450762 1.0000 120 chr2R:10122582-10122702 1.0000 120 chr3L:20518222-20518342 1.0000 120 chr2R:10806600-10806720 1.0000 120 chr2R:7815142-7815262 1.0000 120 chr2R:23668836-23668956 1.0000 120 chr2L:15254360-15254480 1.0000 120 chrX:18405025-18405145 1.0000 120 chr3R:12443369-12443489 1.0000 120 chr2L:7702583-7702703 1.0000 120 chr3L:5819431-5819551 1.0000 120 chr2R:7636688-7636808 1.0000 120 chr2L:1628294-1628414 1.0000 120 chrX:10629035-10629155 1.0000 120 chr2L:10856636-10856756 1.0000 120 chr3R:15139530-15139650 1.0000 120 chr3L:12803822-12803942 1.0000 120 chr2L:20715204-20715324 1.0000 120 chr3R:5413090-5413210 1.0000 120 chr2L:15629922-15630042 1.0000 120 chr3L:21321934-21322054 1.0000 120 chr2R:7241740-7241860 1.0000 120 chrX:13253229-13253349 1.0000 120 chr2R:23578550-23578670 1.0000 120 chr2R:7077027-7077147 1.0000 120 chr2L:7494591-7494711 1.0000 120 chr2R:16849571-16849691 1.0000 120 chr3R:16655816-16655936 1.0000 120 chr2R:17469484-17469604 1.0000 120 chr2L:3356458-3356578 1.0000 120 chr2R:22373515-22373635 1.0000 120 chr2R:6881094-6881214 1.0000 120 chr3R:21161820-21161940 1.0000 120 chr3R:21118941-21119061 1.0000 120 chr2L:7871931-7872051 1.0000 120 chr2R:18172430-18172550 1.0000 120 chrX:8233359-8233479 1.0000 120 chr2L:18377294-18377414 1.0000 120 chr3R:18215433-18215553 1.0000 120 chrX:8493629-8493749 1.0000 120 chr3R:25661648-25661768 1.0000 120 chrX:3399458-3399578 1.0000 120 chr3L:5182409-5182529 1.0000 120 chr3R:27557154-27557274 1.0000 120 chr2R:23818405-23818525 1.0000 120 chrX:5892210-5892330 1.0000 120 chr3L:14335996-14336116 1.0000 120 chrX:9120988-9121108 1.0000 120 chr3L:7861161-7861281 1.0000 120 chr2R:9834853-9834973 1.0000 120 chr3L:8604466-8604586 1.0000 120 chr2L:11044820-11044940 1.0000 120 chrX:10488017-10488137 1.0000 120 chr3L:512019-512139 1.0000 120 chr2L:8738300-8738420 1.0000 120 chr2R:9388643-9388763 1.0000 120 chr2L:16251940-16252060 1.0000 120 chr2R:18811989-18812109 1.0000 120 chr3L:9066158-9066278 1.0000 120 chrX:4262809-4262929 1.0000 120 chr3R:29068934-29069054 1.0000 120 chr2L:20881492-20881612 1.0000 120 chr3R:14875686-14875806 1.0000 120 chr2R:24657144-24657264 1.0000 120 chr2L:12467897-12468017 1.0000 120 chr3R:26121936-26122056 1.0000 120 chr3R:22108435-22108555 1.0000 120 chr3L:12408918-12409038 1.0000 120 chr2R:9544894-9545014 1.0000 120 chr3R:26104521-26104641 1.0000 120 chr3R:26235165-26235285 1.0000 120 chr2L:10698151-10698271 1.0000 120 chr2R:24265281-24265401 1.0000 120 chr2R:17586115-17586235 1.0000 120 chr2R:8002247-8002367 1.0000 120 chr2L:16690188-16690308 1.0000 120 chrX:1858990-1859110 1.0000 120 chr2R:14906661-14906781 1.0000 120 chr2R:6668877-6668997 1.0000 120 chr3R:24010947-24011067 1.0000 120 chr3R:28677002-28677122 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG2120/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2120.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.339 C 0.161 G 0.164 T 0.336 Background letter frequencies (from file dataset with add-one prior applied): A 0.339 C 0.161 G 0.164 T 0.336 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF HRCWKTGC MEME-1 width = 8 sites = 42 llr = 343 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif HRCWKTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 23:5:::: pos.-specific C 32a1:::a probability G 15::4:a: matrix T 4::46a:: bits 2.6 * ** 2.4 * ** 2.1 * ** 1.8 * ** Relative 1.6 * *** Entropy 1.3 * *** (11.8 bits) 1.1 * **** 0.8 ** **** 0.5 ** **** 0.3 ******** 0.0 -------- Multilevel TGCATTGC consensus CA TG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRCWKTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9544894-9545014 92 2.10e-06 CACATTTTTG CGCAGTGC AAAACACATT chr3L:10866769-10866889 11 8.47e-06 TCCTGAATGT CGCATTGC CGTCTGGGCC chr2R:23818405-23818525 85 1.27e-05 TTTGGAACGG CGCTTTGC AGCACCGATC chr3R:5065124-5065244 35 1.27e-05 TTTTTGTTTC CGCTTTGC GCCATATCTA chr2L:4224220-4224340 96 1.27e-05 TATATGTACC CGCTTTGC GTACCTGTAC chr2R:22737969-22738089 82 1.27e-05 TTAAATACAC CGCTTTGC CGCAAACTAA chr3R:23941779-23941899 92 1.71e-05 TGACACACTG TGCAGTGC TGTGCTCTCA chr2L:243972-244092 106 1.71e-05 GTAAAATCAG TGCAGTGC AAATTTT chr3L:512019-512139 15 4.23e-05 ATAGAGGTGG TGCTTTGC TATATGGCat chr3R:12083685-12083805 104 4.23e-05 GTAAACCATT TGCTTTGC TAAGGAAAA chrX:18468020-18468140 64 4.23e-05 CCAATTATGT TGCTTTGC TGTTTTAAAA chr3R:8930245-8930365 54 4.23e-05 ATATTTTTCT TGCTTTGC AAAAATAATT chr3L:8604466-8604586 88 4.68e-05 CCGTGCAGCA AGCAGTGC GCACTGCTTC chr2L:7702583-7702703 90 4.68e-05 GTCGTAGCTA AGCAGTGC AACGAACCCA chr3L:3450642-3450762 3 4.68e-05 GT AGCAGTGC AATCAATATT chr3L:3770946-3771066 75 5.72e-05 GAAAAAATAA CCCATTGC ATCTTCCCAC chr3R:11460930-11461050 81 7.06e-05 CCCCGGTTAG AGCATTGC GCATTCGACT chr3R:8524420-8524540 76 7.06e-05 GTGGACAAAG AGCTGTGC CTGCGCTGCG chr3R:25661648-25661768 93 8.56e-05 AATCCCAATT GGCATTGC TATCGATAGC chr2R:23668836-23668956 58 8.56e-05 TGGTTGCGAT GGCATTGC ACCTGCCTCT chr3R:10699200-10699320 79 8.56e-05 TGATGCTTTC CACAGTGC ACGTATTTGA chrX:5745148-5745268 78 1.18e-04 GAATAGCTTT GGCTTTGC CAAAAACAAT chr3R:17777048-17777168 90 1.18e-04 ATGCTGCAAC CACTGTGC CGGGaacgga chr3L:17941775-17941895 9 1.18e-04 TTAATATT CACATTGC GGAGGCCATC chr3R:21161820-21161940 41 1.36e-04 TTGTTGGCAC TGCCTTGC GTTGTGTAGT chr2R:7077027-7077147 61 1.36e-04 TTGTCTCCGT TCCATTGC TTATTAAAAC chr2L:11203737-11203857 57 1.36e-04 AAATGATTAT TCCATTGC CAAAAGGAGG chr2L:5209887-5210007 84 1.45e-04 TCAAGCATCG CACTTTGC AATCCTACTT chrX:15304398-15304518 56 1.45e-04 TATTTCGTGT CACTTTGC ACCGAATCTT chr2L:11199179-11199299 29 1.63e-04 TCAATGTGGG TACAGTGC GTTTCATGGC chr2R:17161014-17161134 59 1.63e-04 AATGTGGCCT TACAGTGC AAATATATGC chr3R:7500672-7500792 55 1.63e-04 CTTGAAGCAG TACAGTGC TTTAGCAGGG chr2R:12290143-12290263 88 1.63e-04 TTCATTTTCT TCCTTTGC TTGAAGCCAC chr2R:24265281-24265401 28 1.70e-04 attcaaattt aCCAGTGC TGGAAAGCAC chr2R:7615540-7615660 28 2.02e-04 GCTATTATCA GGCCGTGC AATGGGAGAA chr3R:26952312-26952432 73 2.02e-04 TATAGAGACC CCCCTTGC GATGTAGGGG chr3R:31630499-31630619 6 2.02e-04 TAAAA TACATTGC CACAGATTGA chr3R:26121936-26122056 60 2.49e-04 CATTTTCGTT TACTTTGC CGAAACAAAT chr3L:9838667-9838787 45 2.69e-04 GGAAAATGGG AACAGTGC TCGCCATACC chr2L:7443100-7443220 83 2.69e-04 AATTTCTATA ACCTTTGC GGTGAGGGTA chr2L:7871931-7872051 86 3.14e-04 ATGTGTCCTG TCCCTTGC Tataatcata chr3L:7760126-7760246 14 3.14e-04 ATCTATAGAA AACTGTGC CTAAGTTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRCWKTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9544894-9545014 2.1e-06 91_[+1]_21 chr3L:10866769-10866889 8.5e-06 10_[+1]_102 chr2R:23818405-23818525 1.3e-05 84_[+1]_28 chr3R:5065124-5065244 1.3e-05 34_[+1]_78 chr2L:4224220-4224340 1.3e-05 95_[+1]_17 chr2R:22737969-22738089 1.3e-05 81_[+1]_31 chr3R:23941779-23941899 1.7e-05 91_[+1]_21 chr2L:243972-244092 1.7e-05 105_[+1]_7 chr3L:512019-512139 4.2e-05 14_[+1]_98 chr3R:12083685-12083805 4.2e-05 103_[+1]_9 chrX:18468020-18468140 4.2e-05 63_[+1]_49 chr3R:8930245-8930365 4.2e-05 53_[+1]_59 chr3L:8604466-8604586 4.7e-05 87_[+1]_25 chr2L:7702583-7702703 4.7e-05 89_[+1]_23 chr3L:3450642-3450762 4.7e-05 2_[+1]_110 chr3L:3770946-3771066 5.7e-05 74_[+1]_38 chr3R:11460930-11461050 7.1e-05 80_[+1]_32 chr3R:8524420-8524540 7.1e-05 75_[+1]_37 chr3R:25661648-25661768 8.6e-05 92_[+1]_20 chr2R:23668836-23668956 8.6e-05 57_[+1]_55 chr3R:10699200-10699320 8.6e-05 78_[+1]_34 chrX:5745148-5745268 0.00012 77_[+1]_35 chr3R:17777048-17777168 0.00012 89_[+1]_23 chr3L:17941775-17941895 0.00012 8_[+1]_104 chr3R:21161820-21161940 0.00014 40_[+1]_72 chr2R:7077027-7077147 0.00014 60_[+1]_52 chr2L:11203737-11203857 0.00014 56_[+1]_56 chr2L:5209887-5210007 0.00014 83_[+1]_29 chrX:15304398-15304518 0.00014 55_[+1]_57 chr2L:11199179-11199299 0.00016 28_[+1]_84 chr2R:17161014-17161134 0.00016 58_[+1]_54 chr3R:7500672-7500792 0.00016 54_[+1]_58 chr2R:12290143-12290263 0.00016 87_[+1]_25 chr2R:24265281-24265401 0.00017 27_[+1]_85 chr2R:7615540-7615660 0.0002 27_[+1]_85 chr3R:26952312-26952432 0.0002 72_[+1]_40 chr3R:31630499-31630619 0.0002 5_[+1]_107 chr3R:26121936-26122056 0.00025 59_[+1]_53 chr3L:9838667-9838787 0.00027 44_[+1]_68 chr2L:7443100-7443220 0.00027 82_[+1]_30 chr2L:7871931-7872051 0.00031 85_[+1]_27 chr3L:7760126-7760246 0.00031 13_[+1]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRCWKTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HRCWKTGC width=8 seqs=42 chr2R:9544894-9545014 ( 92) CGCAGTGC 1 chr3L:10866769-10866889 ( 11) CGCATTGC 1 chr2R:23818405-23818525 ( 85) CGCTTTGC 1 chr3R:5065124-5065244 ( 35) CGCTTTGC 1 chr2L:4224220-4224340 ( 96) CGCTTTGC 1 chr2R:22737969-22738089 ( 82) CGCTTTGC 1 chr3R:23941779-23941899 ( 92) TGCAGTGC 1 chr2L:243972-244092 ( 106) TGCAGTGC 1 chr3L:512019-512139 ( 15) TGCTTTGC 1 chr3R:12083685-12083805 ( 104) TGCTTTGC 1 chrX:18468020-18468140 ( 64) TGCTTTGC 1 chr3R:8930245-8930365 ( 54) TGCTTTGC 1 chr3L:8604466-8604586 ( 88) AGCAGTGC 1 chr2L:7702583-7702703 ( 90) AGCAGTGC 1 chr3L:3450642-3450762 ( 3) AGCAGTGC 1 chr3L:3770946-3771066 ( 75) CCCATTGC 1 chr3R:11460930-11461050 ( 81) AGCATTGC 1 chr3R:8524420-8524540 ( 76) AGCTGTGC 1 chr3R:25661648-25661768 ( 93) GGCATTGC 1 chr2R:23668836-23668956 ( 58) GGCATTGC 1 chr3R:10699200-10699320 ( 79) CACAGTGC 1 chrX:5745148-5745268 ( 78) GGCTTTGC 1 chr3R:17777048-17777168 ( 90) CACTGTGC 1 chr3L:17941775-17941895 ( 9) CACATTGC 1 chr3R:21161820-21161940 ( 41) TGCCTTGC 1 chr2R:7077027-7077147 ( 61) TCCATTGC 1 chr2L:11203737-11203857 ( 57) TCCATTGC 1 chr2L:5209887-5210007 ( 84) CACTTTGC 1 chrX:15304398-15304518 ( 56) CACTTTGC 1 chr2L:11199179-11199299 ( 29) TACAGTGC 1 chr2R:17161014-17161134 ( 59) TACAGTGC 1 chr3R:7500672-7500792 ( 55) TACAGTGC 1 chr2R:12290143-12290263 ( 88) TCCTTTGC 1 chr2R:24265281-24265401 ( 28) ACCAGTGC 1 chr2R:7615540-7615660 ( 28) GGCCGTGC 1 chr3R:26952312-26952432 ( 73) CCCCTTGC 1 chr3R:31630499-31630619 ( 6) TACATTGC 1 chr3R:26121936-26122056 ( 60) TACTTTGC 1 chr3L:9838667-9838787 ( 45) AACAGTGC 1 chr2L:7443100-7443220 ( 83) ACCTTTGC 1 chr2L:7871931-7872051 ( 86) TCCCTTGC 1 chr3L:7760126-7760246 ( 14) AACTGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRCWKTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 1.2e+003 -66 94 -78 18 -25 24 168 -1204 -1204 264 -1204 -1204 56 -76 -1204 27 -1204 -1204 122 88 -1204 -1204 -1204 157 -1204 -1204 261 -1204 -1204 264 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRCWKTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.2e+003 0.214286 0.309524 0.095238 0.380952 0.285714 0.190476 0.523810 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.095238 0.000000 0.404762 0.000000 0.000000 0.380952 0.619048 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HRCWKTGC MEME-1 regular expression -------------------------------------------------------------------------------- [TCA][GA]C[AT][TG]TGC -------------------------------------------------------------------------------- Time 7.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCCCTCG MEME-2 width = 8 sites = 5 llr = 60 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCCCTCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa88:8: probability G a::2222a matrix T :::::8:: bits 2.6 *** * 2.4 *** * 2.1 *** * 1.8 ***** ** Relative 1.6 ***** ** Entropy 1.3 ***** ** (17.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCCCTCG consensus GGGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCTCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7636688-7636808 81 9.78e-07 GCCAAACTGC GCCCCTCG ACGAAATCTC chr3R:23228775-23228895 94 9.78e-07 GAAAATTGTT GCCCCTCG CAAAAAAAGT chr3L:1609780-1609900 87 1.45e-06 TTATTCGACA GCCCCGCG ACAACAACAG chr2R:8670091-8670211 85 4.44e-06 CTCGATCTAA GCCCCTGG ATCGTATGAG chr3R:22447449-22447569 71 8.94e-06 AGCGGACAAT GCCGGTCG GATATAACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCTCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7636688-7636808 9.8e-07 80_[+2]_32 chr3R:23228775-23228895 9.8e-07 93_[+2]_19 chr3L:1609780-1609900 1.5e-06 86_[+2]_26 chr2R:8670091-8670211 4.4e-06 84_[+2]_28 chr3R:22447449-22447569 8.9e-06 70_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCTCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCCCTCG width=8 seqs=5 chr2R:7636688-7636808 ( 81) GCCCCTCG 1 chr3R:23228775-23228895 ( 94) GCCCCTCG 1 chr3L:1609780-1609900 ( 87) GCCCCGCG 1 chr2R:8670091-8670211 ( 85) GCCCCTGG 1 chr3R:22447449-22447569 ( 71) GCCGGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCTCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 1.3e+003 -897 -897 261 -897 -897 263 -897 -897 -897 263 -897 -897 -897 231 29 -897 -897 231 29 -897 -897 -897 29 125 -897 231 29 -897 -897 -897 261 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCTCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCTCG MEME-2 regular expression -------------------------------------------------------------------------------- GCC[CG][CG][TG][CG]G -------------------------------------------------------------------------------- Time 14.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCRCTG MEME-3 width = 8 sites = 15 llr = 147 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCRCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 19::5::: pos.-specific C 7::9:9:: probability G 3:a151:9 matrix T :1::::a1 bits 2.6 * 2.4 ** * 2.1 ** * 1.8 ** * * Relative 1.6 ** *** Entropy 1.3 * ** *** (14.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCACTG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30325610-30325730 107 2.10e-06 CGGGTTTTTT CAGCGCTG CTTCCT chr2R:24265281-24265401 63 6.43e-06 CGCTGTTTTA CAGCACTG TTTTTAACAG chr2R:23818405-23818525 64 6.43e-06 AGCCGACTTG CAGCACTG GCCTTTGGAA chr2R:8734634-8734754 24 6.43e-06 ATTAAATTCC CAGCACTG ACTGAAGAAA chrX:6090980-6091100 40 8.57e-06 TGTATTAAGC GAGCGCTG TTAACTGTCA chr2L:11044820-11044940 26 1.30e-05 TTGAAAATGT GAGCACTG TAAATTATTA chr2L:937056-937176 70 1.30e-05 CTCTTGACTT GAGCACTG AAGAATTTGC chr2R:8670091-8670211 15 1.30e-05 TTGCGAAGAG GAGCACTG ACCACTGGAA chr3R:8524420-8524540 84 1.51e-05 AGAGCTGTGC CTGCGCTG CGGCAGGAAT chr3L:20827313-20827433 22 1.94e-05 AGCTTTGTAG CTGCACTG GGAGAAATGT chr2L:13882073-13882193 5 2.37e-05 CACT CAGCGCTT AAACAAGATA chr3L:3770946-3771066 17 2.37e-05 TAATTTATAG CAGCGCTT TTCATGATGT chr3R:18215433-18215553 27 2.79e-05 AACGTAAGAC CAGGGCTG CAACTACGAA chr3R:11460930-11461050 111 3.45e-05 TGGCAGCTGG AAGCGCTG AC chr3L:3940642-3940762 47 5.22e-05 ATTAAATGTT CAGCAGTG GTGTCCAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30325610-30325730 2.1e-06 106_[+3]_6 chr2R:24265281-24265401 6.4e-06 62_[+3]_50 chr2R:23818405-23818525 6.4e-06 63_[+3]_49 chr2R:8734634-8734754 6.4e-06 23_[+3]_89 chrX:6090980-6091100 8.6e-06 39_[+3]_73 chr2L:11044820-11044940 1.3e-05 25_[+3]_87 chr2L:937056-937176 1.3e-05 69_[+3]_43 chr2R:8670091-8670211 1.3e-05 14_[+3]_98 chr3R:8524420-8524540 1.5e-05 83_[+3]_29 chr3L:20827313-20827433 1.9e-05 21_[+3]_91 chr2L:13882073-13882193 2.4e-05 4_[+3]_108 chr3L:3770946-3771066 2.4e-05 16_[+3]_96 chr3R:18215433-18215553 2.8e-05 26_[+3]_86 chr3R:11460930-11461050 3.4e-05 110_[+3]_2 chr3L:3940642-3940762 5.2e-05 46_[+3]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCRCTG width=8 seqs=15 chr3R:30325610-30325730 ( 107) CAGCGCTG 1 chr2R:24265281-24265401 ( 63) CAGCACTG 1 chr2R:23818405-23818525 ( 64) CAGCACTG 1 chr2R:8734634-8734754 ( 24) CAGCACTG 1 chrX:6090980-6091100 ( 40) GAGCGCTG 1 chr2L:11044820-11044940 ( 26) GAGCACTG 1 chr2L:937056-937176 ( 70) GAGCACTG 1 chr2R:8670091-8670211 ( 15) GAGCACTG 1 chr3R:8524420-8524540 ( 84) CTGCGCTG 1 chr3L:20827313-20827433 ( 22) CTGCACTG 1 chr2L:13882073-13882193 ( 5) CAGCGCTT 1 chr3L:3770946-3771066 ( 17) CAGCGCTT 1 chr3R:18215433-18215553 ( 27) CAGGGCTG 1 chr3R:11460930-11461050 ( 111) AAGCGCTG 1 chr3L:3940642-3940762 ( 47) CAGCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 4.9e+003 -234 205 70 -1055 135 -1055 -1055 -133 -1055 -1055 261 -1055 -1055 254 -130 -1055 65 -1055 151 -1055 -1055 254 -130 -1055 -1055 -1055 -1055 157 -1055 -1055 240 -133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.9e+003 0.066667 0.666667 0.266667 0.000000 0.866667 0.000000 0.000000 0.133333 0.000000 0.000000 1.000000 0.000000 0.000000 0.933333 0.066667 0.000000 0.533333 0.000000 0.466667 0.000000 0.000000 0.933333 0.066667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCRCTG MEME-3 regular expression -------------------------------------------------------------------------------- [CG]AGC[AG]CTG -------------------------------------------------------------------------------- Time 20.56 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCTCC MEME-4 width = 8 sites = 2 llr = 28 E-value = 8.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a:a:aa probability G :a:a:::: matrix T :::::a:: bits 2.6 ***** ** 2.4 ***** ** 2.1 ***** ** 1.8 ***** ** Relative 1.6 ******** Entropy 1.3 ******** (20.0 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCGCTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4224220-4224340 27 9.78e-07 TCAAATTTGG CGCGCTCC ATTTTCAGTG chr3R:26556060-26556180 81 9.78e-07 TGCCACGTCA CGCGCTCC TTCCAACATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4224220-4224340 9.8e-07 26_[+4]_86 chr3R:26556060-26556180 9.8e-07 80_[+4]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCTCC width=8 seqs=2 chr2L:4224220-4224340 ( 27) CGCGCTCC 1 chr3R:26556060-26556180 ( 81) CGCGCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.3e+003 -765 263 -765 -765 -765 -765 260 -765 -765 263 -765 -765 -765 -765 260 -765 -765 263 -765 -765 -765 -765 -765 157 -765 263 -765 -765 -765 263 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCTCC MEME-4 regular expression -------------------------------------------------------------------------------- CGCGCTCC -------------------------------------------------------------------------------- Time 26.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCACCC MEME-5 width = 8 sites = 2 llr = 28 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :a:a:aaa probability G a:a::::: matrix T :::::::: bits 2.6 **** *** 2.4 **** *** 2.1 **** *** 1.8 **** *** Relative 1.6 ******** Entropy 1.3 ******** (20.0 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCACCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:23668836-23668956 97 9.86e-07 CGCCTTATAA GCGCACCC AAAAGTATCT chr2R:24629563-24629683 94 9.86e-07 TAGTACTTAA GCGCACCC CTTTTTTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23668836-23668956 9.9e-07 96_[+5]_16 chr2R:24629563-24629683 9.9e-07 93_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCACCC width=8 seqs=2 chr2R:23668836-23668956 ( 97) GCGCACCC 1 chr2R:24629563-24629683 ( 94) GCGCACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.1e+004 -765 -765 260 -765 -765 263 -765 -765 -765 -765 260 -765 -765 263 -765 -765 155 -765 -765 -765 -765 263 -765 -765 -765 263 -765 -765 -765 263 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCACCC MEME-5 regular expression -------------------------------------------------------------------------------- GCGCACCC -------------------------------------------------------------------------------- Time 33.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1043717-1043837 6.34e-01 120 chrX:8141431-8141551 1.30e-01 120 chr3L:7760126-7760246 4.93e-02 120 chr2R:20270966-20271086 3.04e-01 120 chrX:13676610-13676730 1.00e+00 120 chr2L:3058884-3059004 7.24e-01 120 chr3R:26556060-26556180 1.79e-06 14_[+3(8.34e-05)]_58_[+4(9.78e-07)]_\ 32 chr3R:10699200-10699320 1.54e-01 78_[+1(8.56e-05)]_34 chr2R:12290143-12290263 3.45e-01 120 chr2L:3755262-3755382 1.00e+00 120 chr3R:7500672-7500792 2.72e-01 120 chrX:8145642-8145762 9.98e-01 120 chr3R:8524420-8524540 1.25e-05 75_[+1(7.06e-05)]_[+3(1.51e-05)]_29 chr3R:26494417-26494537 1.00e+00 120 chrX:10250816-10250936 2.69e-01 120 chr3L:13244318-13244438 8.33e-01 120 chr3L:3492479-3492599 8.74e-01 120 chr3R:11460930-11461050 1.64e-04 80_[+1(7.06e-05)]_22_[+3(3.45e-05)]_\ 2 chr3L:16160086-16160206 6.31e-01 120 chr2R:11044573-11044693 6.31e-01 120 chr3R:7821704-7821824 3.77e-01 120 chr3L:16885192-16885312 8.05e-01 120 chr2L:2723261-2723381 2.19e-01 120 chr3R:10688958-10689078 9.93e-01 120 chrX:16671231-16671351 7.05e-01 120 chr3L:9691272-9691392 9.48e-01 120 chr3L:10362537-10362657 8.89e-01 120 chr3R:17526205-17526325 9.99e-01 120 chr3R:8930245-8930365 5.42e-02 53_[+1(4.23e-05)]_59 chrX:3273702-3273822 1.75e-01 120 chr3L:1629548-1629668 9.26e-01 120 chr3R:31630499-31630619 2.83e-01 120 chr3R:25968675-25968795 2.71e-01 120 chr3L:2913399-2913519 8.63e-01 120 chr2R:10013345-10013465 6.28e-01 120 chr3L:12874334-12874454 2.84e-01 120 chr3R:26952312-26952432 1.41e-02 120 chr3L:3544282-3544402 2.75e-01 120 chr3R:31636664-31636784 3.68e-01 120 chr3R:10380183-10380303 9.53e-01 120 chr2L:19141026-19141146 5.36e-01 120 chr3L:17941775-17941895 1.80e-02 120 chr3R:23228775-23228895 1.43e-02 93_[+2(9.78e-07)]_19 chr2R:22737969-22738089 2.52e-02 81_[+1(1.27e-05)]_31 chrX:20434680-20434800 4.16e-01 120 chr2R:17161014-17161134 4.59e-01 120 chr3L:1609780-1609900 6.48e-03 86_[+2(1.45e-06)]_26 chr2R:16911869-16911989 7.33e-01 120 chrX:3005906-3006026 3.13e-01 120 chrX:18468020-18468140 3.01e-02 63_[+1(4.23e-05)]_49 chr3R:21852662-21852782 9.72e-01 120 chr2L:9779245-9779365 8.15e-01 120 chr2R:7615540-7615660 1.73e-01 120 chr3R:10024177-10024297 8.49e-01 120 chr3L:12409118-12409238 3.39e-01 120 chr3R:23337391-23337511 9.77e-01 120 chr3L:3970533-3970653 3.52e-01 120 chr3L:8177946-8178066 2.08e-01 120 chr2R:23154670-23154790 8.56e-01 120 chr2R:7242969-7243089 9.27e-01 120 chr3R:23191514-23191634 3.39e-01 120 chrX:15120201-15120321 8.42e-01 120 chr3R:9938648-9938768 6.73e-01 120 chr2L:7047889-7048009 8.85e-01 120 chrX:19348955-19349075 9.83e-01 120 chr2L:7443100-7443220 6.04e-02 120 chr2R:8670091-8670211 1.18e-04 14_[+3(1.30e-05)]_48_[+2(4.59e-05)]_\ 6_[+2(4.44e-06)]_28 chr3R:17777048-17777168 1.16e-02 120 chr2R:22616874-22616994 8.58e-01 120 chr3R:17818943-17819063 7.76e-01 120 chrX:15304398-15304518 1.53e-02 120 chr2L:1207613-1207733 6.85e-01 120 chr3L:16146645-16146765 8.95e-01 120 chr2L:4224220-4224340 2.91e-07 26_[+4(9.78e-07)]_61_[+1(1.27e-05)]_\ 17 chr2L:8894384-8894504 6.90e-01 120 chr2L:5569648-5569768 3.58e-01 120 chr2L:9864438-9864558 4.21e-01 120 chr3R:18438844-18438964 2.75e-01 120 chr2L:937056-937176 3.33e-02 69_[+3(1.30e-05)]_43 chr2R:21091978-21092098 3.19e-01 120 chr2L:3938944-3939064 9.59e-01 120 chr3R:30325610-30325730 7.73e-04 106_[+3(2.10e-06)]_6 chr2L:11199179-11199299 2.80e-01 120 chr2R:22033378-22033498 8.70e-01 120 chr3R:12083685-12083805 2.95e-01 103_[+1(4.23e-05)]_9 chr3R:30134766-30134886 2.33e-01 120 chr2L:7494388-7494508 9.97e-01 120 chrX:6090980-6091100 3.24e-03 39_[+3(8.57e-06)]_73 chrX:10184780-10184900 9.89e-01 120 chr3L:8284808-8284928 4.88e-01 120 chr3L:11402439-11402559 6.76e-01 120 chrX:23010757-23010877 4.03e-01 120 chr2L:13461100-13461220 8.19e-01 120 chr3R:26280491-26280611 1.78e-01 120 chr3L:3940642-3940762 4.82e-02 46_[+3(5.22e-05)]_66 chr2R:14136879-14136999 6.64e-01 120 chrX:10757828-10757948 8.61e-01 120 chr2L:243972-244092 5.01e-04 105_[+1(1.71e-05)]_7 chr3L:3760760-3760880 7.83e-02 120 chr2L:17204009-17204129 7.14e-01 120 chr2L:1158270-1158390 6.34e-01 120 chrX:966925-967045 7.02e-01 120 chr3L:11785442-11785562 9.81e-01 120 chr2R:14604312-14604432 1.95e-01 120 chr2L:18119773-18119893 7.99e-01 120 chrX:11550196-11550316 9.27e-01 120 chr3L:9697333-9697453 2.32e-01 120 chr3L:3770946-3771066 1.14e-03 16_[+3(2.37e-05)]_50_[+1(5.72e-05)]_\ 38 chr2R:8650588-8650708 9.56e-01 120 chr3R:26121209-26121329 9.48e-01 120 chr2R:23202123-23202243 8.35e-01 120 chr3R:26333418-26333538 1.00e+00 120 chrX:17696814-17696934 5.61e-01 120 chr2R:14247584-14247704 8.37e-01 120 chr3L:20827313-20827433 6.41e-02 21_[+3(1.94e-05)]_91 chrX:13817570-13817690 9.99e-01 120 chrX:22449404-22449524 3.53e-01 120 chr2L:18707971-18708091 2.18e-01 120 chr3R:27289761-27289881 6.75e-01 120 chr3L:9468385-9468505 9.94e-01 120 chr3R:16355549-16355669 8.58e-02 120 chr2L:1218170-1218290 8.82e-01 120 chr2L:20079033-20079153 7.60e-01 120 chrX:13333073-13333193 3.71e-01 120 chr3L:3411863-3411983 8.76e-01 120 chrX:18494293-18494413 2.93e-01 120 chr3R:23941779-23941899 4.44e-03 91_[+1(1.71e-05)]_21 chr3L:9838667-9838787 4.70e-02 120 chr3R:13446685-13446805 8.95e-01 120 chr2R:15155098-15155218 1.00e+00 120 chr2L:11203737-11203857 4.42e-02 120 chr2L:6088952-6089072 4.37e-01 120 chrX:19964366-19964486 6.56e-01 120 chr2R:6781860-6781980 6.53e-01 120 chr3L:16310123-16310243 5.82e-01 120 chr2L:8461939-8462059 6.95e-01 120 chr3R:14351562-14351682 9.13e-01 120 chr2R:22789398-22789518 6.40e-01 120 chr2R:24292855-24292975 8.54e-01 120 chrX:5745148-5745268 1.29e-02 120 chr3R:16704378-16704498 3.56e-01 120 chrX:8273896-8274016 3.09e-01 120 chr2L:3477357-3477477 4.50e-01 120 chr2R:8734634-8734754 6.08e-02 23_[+3(6.43e-06)]_89 chr2L:19019200-19019320 9.90e-01 120 chr2R:24893692-24893812 9.29e-01 120 chr3R:22628057-22628177 9.92e-01 120 chr2L:12542128-12542248 1.00e+00 120 chrX:14169196-14169316 6.89e-01 120 chr2R:24629563-24629683 3.52e-04 93_[+5(9.86e-07)]_19 chr3L:8763279-8763399 3.97e-01 120 chrX:16781236-16781356 9.88e-01 120 chrX:947635-947755 6.39e-01 120 chrX:13376666-13376786 5.30e-01 120 chr3L:21011374-21011494 9.79e-01 120 chr3R:5065124-5065244 1.15e-02 34_[+1(1.27e-05)]_78 chr3L:10866769-10866889 6.79e-03 10_[+1(8.47e-06)]_102 chr2L:16271105-16271225 9.95e-01 120 chr2L:14141390-14141510 9.92e-01 120 chr3L:1151758-1151878 2.36e-01 120 chr2R:7987794-7987914 9.99e-01 120 chr2L:5209887-5210007 2.28e-01 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********************************************************************************