******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2116.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:913821-913941 1.0000 120 chr2R:7709498-7709618 1.0000 120 chrX:7986678-7986798 1.0000 120 chr3R:12548359-12548479 1.0000 120 chrX:12018558-12018678 1.0000 120 chrX:7324149-7324269 1.0000 120 chr2R:10805233-10805353 1.0000 120 chrX:12467329-12467449 1.0000 120 chr2R:21168227-21168347 1.0000 120 chr2R:11360643-11360763 1.0000 120 chr2L:9540376-9540496 1.0000 120 chr3R:16651104-16651224 1.0000 120 chrX:20162711-20162831 1.0000 120 chr3R:29993357-29993477 1.0000 120 chrX:21395593-21395713 1.0000 120 chr2L:10396602-10396722 1.0000 120 chrX:15867128-15867248 1.0000 120 chrX:15866925-15867045 1.0000 120 chr2L:455431-455551 1.0000 120 chr2R:7940670-7940790 1.0000 120 chr2R:17670003-17670123 1.0000 120 chr3R:5467701-5467821 1.0000 120 chr2R:22874611-22874731 1.0000 120 chr3L:23015852-23015972 1.0000 120 chrX:15860035-15860155 1.0000 120 chr2R:2856822-2856942 1.0000 120 chr2L:8123932-8124052 1.0000 120 chrX:20656104-20656224 1.0000 120 chr2R:7712005-7712125 1.0000 120 chrX:15345089-15345209 1.0000 120 chr3L:15816868-15816988 1.0000 120 chr2R:4268940-4269060 1.0000 120 chr3L:14408835-14408955 1.0000 120 chr3L:13040998-13041118 1.0000 120 chr2R:23693890-23694010 1.0000 120 chr2R:10805436-10805556 1.0000 120 chr3R:20551455-20551575 1.0000 120 chr3L:8623867-8623987 1.0000 120 chr2L:1036955-1037075 1.0000 120 chrX:19618491-19618611 1.0000 120 chrX:6261013-6261133 1.0000 120 chrX:5746469-5746589 1.0000 120 chr2R:12923787-12923907 1.0000 120 chrX:2251803-2251923 1.0000 120 chr2L:9893373-9893493 1.0000 120 chr2L:9612998-9613118 1.0000 120 chr3L:17846746-17846866 1.0000 120 chr2L:1419790-1419910 1.0000 120 chr3R:23902695-23902815 1.0000 120 chr3R:5127328-5127448 1.0000 120 chr2L:20735453-20735573 1.0000 120 chr2L:2969622-2969742 1.0000 120 chr2L:4452987-4453107 1.0000 120 chr3L:13999330-13999450 1.0000 120 chrX:3936405-3936525 1.0000 120 chr3R:7155089-7155209 1.0000 120 chr3R:16652299-16652419 1.0000 120 chr2R:13159957-13160077 1.0000 120 chr2R:9165603-9165723 1.0000 120 chr3L:13031475-13031595 1.0000 120 chr2L:294635-294755 1.0000 120 chr2R:10557169-10557289 1.0000 120 chrX:9639264-9639384 1.0000 120 chr2L:19530260-19530380 1.0000 120 chr2R:23543971-23544091 1.0000 120 chr2R:13039611-13039731 1.0000 120 chr3R:6456489-6456609 1.0000 120 chr2L:19064854-19064974 1.0000 120 chrX:17865235-17865355 1.0000 120 chrX:16553928-16554048 1.0000 120 chrX:18138414-18138534 1.0000 120 chrX:784660-784780 1.0000 120 chrX:13738036-13738156 1.0000 120 chrX:11621514-11621634 1.0000 120 chrX:15701184-15701304 1.0000 120 chr3R:14901547-14901667 1.0000 120 chrX:6688924-6689044 1.0000 120 chr2L:13382464-13382584 1.0000 120 chr3L:20491681-20491801 1.0000 120 chr2R:7021772-7021892 1.0000 120 chr2R:10112213-10112333 1.0000 120 chrX:15746203-15746323 1.0000 120 chrX:6689124-6689244 1.0000 120 chrX:2012072-2012192 1.0000 120 chrX:13090765-13090885 1.0000 120 chr2R:8939813-8939933 1.0000 120 chr2R:18705903-18706023 1.0000 120 chr2R:17048747-17048867 1.0000 120 chr2L:10743924-10744044 1.0000 120 chr3L:7094232-7094352 1.0000 120 chrX:13658279-13658399 1.0000 120 chr3L:710334-710454 1.0000 120 chr2R:10049395-10049515 1.0000 120 chr4:855234-855354 1.0000 120 chrX:16313565-16313685 1.0000 120 chr2R:7380873-7380993 1.0000 120 chr3R:14663141-14663261 1.0000 120 chrX:625308-625428 1.0000 120 chr2R:14618263-14618383 1.0000 120 chr2R:9094561-9094681 1.0000 120 chrX:5873323-5873443 1.0000 120 chr3L:5897414-5897534 1.0000 120 chr3L:12732885-12733005 1.0000 120 chr2L:21677649-21677769 1.0000 120 chrX:12763604-12763724 1.0000 120 chr3L:18841390-18841510 1.0000 120 chrX:4702966-4703086 1.0000 120 chr2L:8400317-8400437 1.0000 120 chrX:4686900-4687020 1.0000 120 chr3R:4359410-4359530 1.0000 120 chr2R:13206659-13206779 1.0000 120 chr2L:10251706-10251826 1.0000 120 chr3R:9258645-9258765 1.0000 120 chrX:11615786-11615906 1.0000 120 chrX:16787008-16787128 1.0000 120 chrX:6090211-6090331 1.0000 120 chr2L:20427555-20427675 1.0000 120 chrX:11092400-11092520 1.0000 120 chrX:5876774-5876894 1.0000 120 chrX:16593529-16593649 1.0000 120 chr3R:12219631-12219751 1.0000 120 chr3R:9258443-9258563 1.0000 120 chr2L:19580388-19580508 1.0000 120 chrX:10848638-10848758 1.0000 120 chr3L:7975021-7975141 1.0000 120 chr3L:13027482-13027602 1.0000 120 chr3R:5633534-5633654 1.0000 120 chr3R:7135958-7136078 1.0000 120 chr2R:22185920-22186040 1.0000 120 chrX:3788586-3788706 1.0000 120 chrX:16361436-16361556 1.0000 120 chr3L:13949808-13949928 1.0000 120 chr3R:21878653-21878773 1.0000 120 chr3L:17024210-17024330 1.0000 120 chr3R:21886944-21887064 1.0000 120 chr2R:24664337-24664457 1.0000 120 chr3R:13699487-13699607 1.0000 120 chr3L:15548244-15548364 1.0000 120 chr2R:24603569-24603689 1.0000 120 chrX:6533888-6534008 1.0000 120 chr3L:1295010-1295130 1.0000 120 chr3R:24230101-24230221 1.0000 120 chr2L:11120279-11120399 1.0000 120 chrX:11993384-11993504 1.0000 120 chr2L:8305483-8305603 1.0000 120 chrX:2636874-2636994 1.0000 120 chrX:15732076-15732196 1.0000 120 chr3L:6955633-6955753 1.0000 120 chrX:22482291-22482411 1.0000 120 chr2R:17056794-17056914 1.0000 120 chr3L:14942906-14943026 1.0000 120 chr2L:4886329-4886449 1.0000 120 chr3L:16566916-16567036 1.0000 120 chr2L:1006627-1006747 1.0000 120 chr3R:19642728-19642848 1.0000 120 chrX:7968664-7968784 1.0000 120 chr3L:16051430-16051550 1.0000 120 chr2R:24661386-24661506 1.0000 120 chr2L:454743-454863 1.0000 120 chr3R:10413166-10413286 1.0000 120 chr2R:17865926-17866046 1.0000 120 chrX:9273135-9273255 1.0000 120 chr2L:4382690-4382810 1.0000 120 chrX:23007607-23007727 1.0000 120 chrX:5695195-5695315 1.0000 120 chr3L:16139246-16139366 1.0000 120 chr3R:30806971-30807091 1.0000 120 chr2L:1147725-1147845 1.0000 120 chr2L:17590046-17590166 1.0000 120 chr2L:13000589-13000709 1.0000 120 chrX:18884427-18884547 1.0000 120 chrX:15785544-15785664 1.0000 120 chr2L:10419090-10419210 1.0000 120 chr2R:18972520-18972640 1.0000 120 chrX:19616085-19616205 1.0000 120 chr2R:23972366-23972486 1.0000 120 chr3L:17035557-17035677 1.0000 120 chr3R:22375720-22375840 1.0000 120 chrX:13606060-13606180 1.0000 120 chr3L:174656-174776 1.0000 120 chr3R:22381224-22381344 1.0000 120 chr2L:19498104-19498224 1.0000 120 chrX:19762327-19762447 1.0000 120 chr2R:15676700-15676820 1.0000 120 chrX:15486796-15486916 1.0000 120 chr2L:5093865-5093985 1.0000 120 chr3L:18865582-18865702 1.0000 120 chrX:1692704-1692824 1.0000 120 chr3R:6380284-6380404 1.0000 120 chrX:2172419-2172539 1.0000 120 chr3R:5670969-5671089 1.0000 120 chr3R:13013122-13013242 1.0000 120 chrX:16321149-16321269 1.0000 120 chrX:1664951-1665071 1.0000 120 chrX:6687424-6687544 1.0000 120 chr2L:19041722-19041842 1.0000 120 chr2R:6746290-6746410 1.0000 120 chrX:11351080-11351200 1.0000 120 chr3R:21406866-21406986 1.0000 120 chr3R:15834586-15834706 1.0000 120 chrX:18893634-18893754 1.0000 120 chr3R:27929662-27929782 1.0000 120 chr3R:11626699-11626819 1.0000 120 chr3L:3334951-3335071 1.0000 120 chr2R:16240702-16240822 1.0000 120 chr3L:8634062-8634182 1.0000 120 chr2L:11282023-11282143 1.0000 120 chr2R:21687614-21687734 1.0000 120 chr3R:15346149-15346269 1.0000 120 chr2R:23851273-23851393 1.0000 120 chr4:834976-835096 1.0000 120 chr2L:19123789-19123909 1.0000 120 chr2R:4261622-4261742 1.0000 120 chrX:8240581-8240701 1.0000 120 chrX:20426998-20427118 1.0000 120 chr2L:7223010-7223130 1.0000 120 chrX:16303806-16303926 1.0000 120 chr3R:15268567-15268687 1.0000 120 chr2L:19033450-19033570 1.0000 120 chr2R:15954954-15955074 1.0000 120 chrX:11868967-11869087 1.0000 120 chr3L:13412675-13412795 1.0000 120 chr2L:2045374-2045494 1.0000 120 chr3R:24719531-24719651 1.0000 120 chr2R:18972727-18972847 1.0000 120 chr3R:5550611-5550731 1.0000 120 chr3R:7530351-7530471 1.0000 120 chr3L:1940956-1941076 1.0000 120 chr2R:5143666-5143786 1.0000 120 chr3L:8956726-8956846 1.0000 120 chr2L:11130328-11130448 1.0000 120 chr2L:12174891-12175011 1.0000 120 chr2L:22121003-22121123 1.0000 120 chr3L:7510528-7510648 1.0000 120 chr3R:10407264-10407384 1.0000 120 chrX:7931372-7931492 1.0000 120 chr3L:710544-710664 1.0000 120 chr3R:12995575-12995695 1.0000 120 chrX:11090229-11090349 1.0000 120 chr2R:22483228-22483348 1.0000 120 chr2R:9846473-9846593 1.0000 120 chrX:10595936-10596056 1.0000 120 chr2L:19063254-19063374 1.0000 120 chr3R:16643620-16643740 1.0000 120 chrX:8116140-8116260 1.0000 120 chr2L:19530462-19530582 1.0000 120 chr2R:9843692-9843812 1.0000 120 chr2R:17792472-17792592 1.0000 120 chr2R:12958771-12958891 1.0000 120 chr3R:25056143-25056263 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG2116/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2116.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.299 C 0.196 G 0.197 T 0.308 Background letter frequencies (from file dataset with add-one prior applied): A 0.299 C 0.196 G 0.197 T 0.308 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 184 llr = 1475 E-value = 2.6e-176 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 39:::a18 pos.-specific C :::a:::: probability G ::::a::: matrix T 7:9:::91 bits 2.4 ** 2.1 ** 1.9 ** 1.6 ** Relative 1.4 **** Entropy 1.2 ****** (11.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19063254-19063374 3 3.02e-05 GT TATCGATA AAACCTATTT chrX:10595936-10596056 112 3.02e-05 TCAGTGGAGT TATCGATA G chr2R:22483228-22483348 24 3.02e-05 TATGCTGTAC TATCGATA TTTTCAAGCG chrX:11090229-11090349 76 3.02e-05 TTTAGCATAA TATCGATA TTAGCGGTAT chr3R:12995575-12995695 52 3.02e-05 CGATAAGAGG TATCGATA TACAAAGCTG chrX:7931372-7931492 60 3.02e-05 CCTGCAAAAC TATCGATA AATATTGTTT chr3R:10407264-10407384 72 3.02e-05 TAGCATTAGT TATCGATA AGAACAAAAT chr2L:12174891-12175011 65 3.02e-05 TGGGCTGCAT TATCGATA AAAGCCCGCA chr3L:8956726-8956846 88 3.02e-05 CCTGGCTGTT TATCGATA AACTGCTCAC chr3R:24719531-24719651 90 3.02e-05 GTTCTGTTCT TATCGATA CGTTTGTGCC chr2R:15954954-15955074 71 3.02e-05 AGTGCGAATA TATCGATA ATCGATAGCA chr2L:19033450-19033570 83 3.02e-05 GCACTTTCTC TATCGATA GAAAATATCG chrX:16303806-16303926 71 3.02e-05 AACATATGTA TATCGATA ACTTTTTACC chr2L:7223010-7223130 46 3.02e-05 ACAAGACTGC TATCGATA TGCGAAGGCG chr2L:19123789-19123909 59 3.02e-05 CACGGCCTGT TATCGATA ATACAACTGT chr3R:15346149-15346269 20 3.02e-05 ATCGCTGCGT TATCGATA GCCAATGGGC chr2R:21687614-21687734 54 3.02e-05 TTGCCGCAAC TATCGATA GCTGGCTGGG chrX:18893634-18893754 40 3.02e-05 TGTTTGTTGT TATCGATA GTCGATTGGC chr3R:21406866-21406986 47 3.02e-05 AAGGGATGTG TATCGATA ATATCACAGA chrX:6687424-6687544 50 3.02e-05 TTGCATGCGT TATCGATA TCGCCTGCCA chrX:1664951-1665071 88 3.02e-05 GGCGACTGGC TATCGATA CTGCTAGTGC chr3R:5670969-5671089 76 3.02e-05 AATTATCGAA TATCGATA AGATGCAGGC chrX:2172419-2172539 36 3.02e-05 TCGCGATAGT TATCGATA AGTATATCAA chr2R:15676700-15676820 86 3.02e-05 TACTTGCACT TATCGATA TCGGAATGTA chr3R:22381224-22381344 75 3.02e-05 TCGGACTGTT TATCGATA GGCTAGAGGC chr3L:174656-174776 34 3.02e-05 GCTTAGTATG TATCGATA GTAATCGATA chrX:13606060-13606180 56 3.02e-05 AAGCGAAACA TATCGATA ACCGGCAAAT chr3L:17035557-17035677 73 3.02e-05 GCATTACAGT TATCGATA TGATCTACTT chr2R:23972366-23972486 54 3.02e-05 AGAATCGACT TATCGATA ACAGCATTAT chrX:19616085-19616205 100 3.02e-05 TGTTGCGTGC TATCGATA GACGGTGGAA chr2L:1147725-1147845 66 3.02e-05 CAGAGTCCGT TATCGATA TTCCGGCAGA chr3L:16139246-16139366 87 3.02e-05 TGCAATTGGT TATCGATA ACTTCAGTTT chrX:5695195-5695315 79 3.02e-05 CGGCAACGCT TATCGATA AGTGGTCATT chr2L:4382690-4382810 82 3.02e-05 ATCGAGCGCT TATCGATA TCAAACGCTG chr3R:19642728-19642848 38 3.02e-05 CTCGATAATA TATCGATA ACTGAGCGCG chrX:22482291-22482411 70 3.02e-05 AAAGTCCGGT TATCGATA TCTGACGTCA chrX:11993384-11993504 92 3.02e-05 tagatatcga tatcgata tagatatcga chr2L:11120279-11120399 45 3.02e-05 TGTCTTATGC TATCGATA GCGCCGACTT chr3L:1295010-1295130 20 3.02e-05 ATACGTAAAC TATCGATA GTAGTTGAGC chr2R:24664337-24664457 44 3.02e-05 ACGGCTACAC TATCGATA TAAATTGTTA chr3R:5633534-5633654 52 3.02e-05 GGTTCCAGCC TATCGATA GCGTAATCGG chrX:10848638-10848758 67 3.02e-05 ACATGAAAAA TATCGATA TTTACGCAGT chr3R:9258443-9258563 58 3.02e-05 TCAACCGATG TATCGATA ACATGCCATC chrX:11092400-11092520 78 3.02e-05 TCTAGGGATG TATCGATA TGCAATCGAT chrX:6090211-6090331 62 3.02e-05 ACAACATTGA TATCGATA ATAAACTAAC chr2R:13206659-13206779 29 3.02e-05 TGCTGCTGGA TATCGATA TCCACTATCA chr3R:4359410-4359530 62 3.02e-05 GGAGCTTTGC TATCGATA TAAAATTGAA chrX:12763604-12763724 40 3.02e-05 TTGCTGCTCA TATCGATA CATATGTATA chr3L:5897414-5897534 15 3.02e-05 TGTTGTCAAT TATCGATA TCTATGTGCA chrX:5873323-5873443 18 3.02e-05 ATGCGGGCGT TATCGATA ACCTCGATAA chr3L:710334-710454 45 3.02e-05 ATTTCGAAGT TATCGATA AAGTTTGCTT chr3L:7094232-7094352 41 3.02e-05 GATAGAAAAC TATCGATA TCTATTTAAC chr2L:10743924-10744044 40 3.02e-05 TCTTAAATGA TATCGATA GCGATGCTTC chr2R:8939813-8939933 87 3.02e-05 CACCCACTGA TATCGATA GCATGCAATT chrX:6689124-6689244 73 3.02e-05 CTGCATTTGC TATCGATA ACCGATAGCC chrX:784660-784780 20 3.02e-05 GGCCCAGATT TATCGATA GCGAGGGCGA chrX:18138414-18138534 35 3.02e-05 ATCGATGCCA TATCGATA CCTTATCGAT chr2L:19064854-19064974 14 3.02e-05 GTACTAATGT TATCGATA TGTTGACTAA chr2R:23543971-23544091 22 3.02e-05 AGCAAGCATT TATCGATA GCTGCCAGGC chr2R:10557169-10557289 15 3.02e-05 GGCGCCAACA TATCGATA ATATATAATG chr2L:294635-294755 67 3.02e-05 GATGATTAGT TATCGATA TTTAGTGTTT chr2R:9165603-9165723 85 3.02e-05 GATAGTTCGA TATCGATA CGTTGTTGAA chr3R:16652299-16652419 79 3.02e-05 GTTTCCGACT TATCGATA GGAATTAAGT chrX:3936405-3936525 52 3.02e-05 AATACAAGAC TATCGATA ACGAACAGAT chr3L:13999330-13999450 106 3.02e-05 ATTCCCCACT TATCGATA TACCTTA chr2L:4452987-4453107 91 3.02e-05 TCCGTCTGTA TATCGATA AAATACATCT chr2L:9893373-9893493 56 3.02e-05 TTTTCCATGT TATCGATA TCGAAAGTGA chr2R:12923787-12923907 26 3.02e-05 AATAGCTGCC TATCGATA CAATTTTCGA chrX:6261013-6261133 85 3.02e-05 TTTGCACGCA TATCGATA CTTGATGCCA chr2L:1036955-1037075 58 3.02e-05 GACCTATCGA TATCGATA GACTTAGGCG chr2R:10805436-10805556 90 3.02e-05 GTAATTCAGA TATCGATA TATCCCAAAC chr2R:23693890-23694010 45 3.02e-05 ACCGCCCCGT TATCGATA TCAGCTGCAA chr3L:15816868-15816988 67 3.02e-05 CTCTGCATTG TATCGATA AATTAAACAT chr2R:7712005-7712125 64 3.02e-05 AGCAATTATT TATCGATA AGACGGCAAA chrX:20656104-20656224 59 3.02e-05 CTTCGTTAGT TATCGATA TTCCCTTGCA chr2R:2856822-2856942 83 3.02e-05 TAGTTCGATA TATCGATA AATTACGACT chrX:15860035-15860155 34 3.02e-05 GTATCAATGC TATCGATA TCCGCATACA chr3L:23015852-23015972 87 3.02e-05 CTGGCTCTCT TATCGATA AGTCTAAGTT chr2L:10396602-10396722 111 3.02e-05 CGCTTGCTAT TATCGATA GT chr3R:16651104-16651224 63 3.02e-05 TCCCTGAGTC TATCGATA GTTTTCCCAG chr2L:11282023-11282143 75 5.94e-05 ATCGATATTT AATCGATA CATCCGCGGT chr3R:27929662-27929782 56 5.94e-05 TCATCCTGCC AATCGATA ACAATCCTGA chr2R:6746290-6746410 53 5.94e-05 GCTCTTCGTT AATCGATA GTTGGCTCAA chr2L:19041722-19041842 112 5.94e-05 TGAGCGAAAC AATCGATA C chrX:15486796-15486916 70 5.94e-05 GCCTATCGCC AATCGATA GCTGACCAAA chr2L:10419090-10419210 10 5.94e-05 ATAAAAATA AATCGATA GTCGAATGAC chr2L:13000589-13000709 92 5.94e-05 TGCTATCTGA AATCGATA TTTTCTCGCC chrX:23007607-23007727 8 5.94e-05 TTTTCTA AATCGATA GCATTCCAGC chr2L:454743-454863 13 5.94e-05 ATATTAAGAC AATCGATA GGCTGCATTA chr2R:24661386-24661506 46 5.94e-05 TCCATTAGGT AATCGATA AGTGCTTTGC chr2R:17056794-17056914 88 5.94e-05 GATTCCCTTT AATCGATA CGTAGTTTTT chr2L:8305483-8305603 51 5.94e-05 TTATGCATAA AATCGATA TTTCAGTTTG chr3L:17024210-17024330 86 5.94e-05 TCAACGAAAT AATCGATA GCGATTTGGA chr3R:21878653-21878773 41 5.94e-05 GCTGTTCTGC AATCGATA ATCGACATAC chr2R:22185920-22186040 58 5.94e-05 CTAGCATGTC AATCGATA TCAGGACGTC chr3L:13027482-13027602 51 5.94e-05 CAATGCCATT AATCGATA ACCAATTAAC chr2L:20427555-20427675 45 5.94e-05 GCCGCCAAAT AATCGATA TTCGATTGGT chrX:11615786-11615906 67 5.94e-05 CGAGCGTGCT AATCGATA ATAAAATTGC chrX:4686900-4687020 38 5.94e-05 GCAGCACACC AATCGATA ACAACGAGGA chr3R:14663141-14663261 78 5.94e-05 TTCAATAAAT AATCGATA AGTTTCACAA chr2R:13039611-13039731 99 5.94e-05 CAGCTATCGA AATCGATA GCAAAAGCCA chr3L:14408835-14408955 46 5.94e-05 TATATGGGTC AATCGATA TACACCGACA chrX:15345089-15345209 89 5.94e-05 TTAATGCTGT AATCGATA ACTTTGATTG chrX:15866925-15867045 87 5.94e-05 ACTGAAAACA AATCGATA AATATATAAA chr2R:10805233-10805353 68 5.94e-05 CTATCGAGTG AATCGATA TCGTCGGAAT chr3L:1940956-1941076 98 9.05e-05 GTAAGCAAAG TATCGATT ATTTTCAGAT chr3L:8634062-8634182 91 9.05e-05 GTCGATCGCC TATCGATT AGGCGCGCAT chr3L:14942906-14943026 29 9.05e-05 ACTCCTCGCC TATCGATT ATTTTTGGAG chrX:15732076-15732196 67 9.05e-05 CGATCGACAT TATCGATT GTGACATCGA chr3L:15548244-15548364 24 9.05e-05 TAGTTACACA TATCGATT GTCGATAACT chr2L:10251706-10251826 83 9.05e-05 CTCCTAAATA TATCGATT CATCGATAAG chr2L:8400317-8400437 52 9.05e-05 TCGCTCTGCT TATCGATT ATTCGATTAC chr2R:18705903-18706023 1 9.05e-05 . TATCGATT ACCGACAGTT chr2R:10112213-10112333 70 9.05e-05 GCTTAAAAAG TATCGATT TAACATCGAT chrX:2251803-2251923 52 9.05e-05 GTGGCCTGGG TATCGATT GCTCCGTCGC chr3L:8623867-8623987 78 9.05e-05 TCTCTGCGAC TATCGATT TTTGAGTGCA chr2L:11130328-11130448 14 1.10e-04 TACGCTGTGA TATCGATG TTTAGAGGTT chrX:8240581-8240701 52 1.10e-04 AAATTGAACA TATCGATG TAGCACAAAG chrX:3788586-3788706 25 1.10e-04 TGTGTGTGTA TATCGATG TGATGTCATC chr3R:12219631-12219751 48 1.10e-04 TCGAATTATG TATCGATG ACTGGCAACA chrX:5876774-5876894 107 1.10e-04 AATCGGTGGT TATCGATG TACAAT chr2L:2969622-2969742 62 1.10e-04 CGATTACATT TATCGATG TCGACCGGTT chrX:7324149-7324269 43 1.10e-04 CGCCATTAGT TATCGATG ACGATTGCAG chr3R:25056143-25056263 61 1.40e-04 ATTCGTAAGT TATCGAAA TACGGTATTC chr2L:22121003-22121123 60 1.40e-04 ATTTAGGATA TATCGAAA AGAATGAATA chrX:15785544-15785664 80 1.40e-04 TGGGATACGT TATCGAAA ACGTTACACG chrX:16787008-16787128 84 1.40e-04 TACGATACGT TATCGAAA ACGTTACATT chrX:13090765-13090885 20 1.40e-04 CAACATTACG TATCGAAA ACGGAGTGAC chr2R:7021772-7021892 69 1.40e-04 TCGCGAATTG TATCGAAA TAAAGATTTT chr3L:20491681-20491801 80 1.40e-04 TGGAAAACAA TATCGAAA ACAACTCGGC chrX:21395593-21395713 47 1.40e-04 TTCgataaaa tatcgaaa aatggttcaa chr4:834976-835096 60 1.70e-04 ATTACAATCA AATCGATT ATTCATTTAT chrX:1692704-1692824 108 1.70e-04 GAATGGCTCC AATCGATT ACTGG chrX:18884427-18884547 34 1.70e-04 GCAGACCGCC AATCGATT GTTTACGTAT chrX:2636874-2636994 92 1.70e-04 TGCAGTCGGT AATCGATT GCAGTGGGAA chr2R:14618263-14618383 92 1.70e-04 TCGCTATCAA AATCGATT TCATTGATTT chrX:12467329-12467449 30 1.70e-04 CGAGCTTGAC AATCGATT TTTGTCATGG chr3R:15834586-15834706 55 2.40e-04 TTATCGGTCT TGTCGATA AATTAGAGCT chr2R:17865926-17866046 50 2.40e-04 TTAACGATAA CATCGATA TCTCTAGTTT chr2L:19580388-19580508 13 2.40e-04 AGCGTATCGT CATCGATA GGCGGCCAAT chr3L:12732885-12733005 103 2.40e-04 CAATTTGACA TTTCGATA TATTATCGGA chr2R:17670003-17670123 44 2.40e-04 ACGAAACGTA CATCGATA TGCTGTGTCC chr2L:455431-455551 20 2.40e-04 TTGGCTCAGC TGTCGATA ACTGGCGCAG chr3R:5550611-5550731 84 2.59e-04 CGTCACTCGA TACCGATA CCCGCCAATT chr3R:21886944-21887064 12 2.59e-04 TTTTTTCGAA TACCGATA ATTACGCGCC chrX:16361436-16361556 72 2.59e-04 TTTTTTTATC TACCGATA TTACGTTTGT chr2L:19498104-19498224 32 2.78e-04 GCTGCCAAGA AATCGATG ACCGAAGAAA chrX:12018558-12018678 44 2.78e-04 AGACTTCCGT AATCGATG ACTATCGAAC chrX:19762327-19762447 9 2.98e-04 GCTCGATG GATCGATA AAGCGCGGAC chr3L:13031475-13031595 85 2.98e-04 CTATGTAATT GATCGATA AATGGTAAAA chr2L:4886329-4886449 53 3.26e-04 TTGGCTTTCA AATCGAAA ACCGTTAGAT chrX:13658279-13658399 26 3.26e-04 CAACGAAATA AATCGAAA GCTTGCCTGG chrX:15701184-15701304 95 3.55e-04 TTTTGATGTC TAACGATA AATTTTGTGT chr3R:29993357-29993477 45 3.55e-04 GAAGTCTCGA TAACGATA GTTGTCCCCA chr2R:11360643-11360763 58 3.55e-04 CAATAACCGA TAACGATA ACTTGCGACC chrX:20426998-20427118 84 4.06e-04 tcgctctgaa tatcgtta tcgttTAAAA chrX:17865235-17865355 89 4.06e-04 AACAATTGGT TATCGTTA TCGTTGCAGT chr2R:21168227-21168347 18 4.06e-04 GACATGGAGT TATCGTTA TCGGGTGCTG chr3R:16643620-16643740 45 4.75e-04 AAAGGGAAAA ATTCGATA AGTTCCGATT chr3L:13412675-13412795 104 4.75e-04 CGCAGCGCAA AGTCGATA TAAAGCAAA chr2R:17048747-17048867 10 4.75e-04 TCAATTTAA ATTCGATA ACTGATATAG chrX:16553928-16554048 27 4.75e-04 ATAGATGCAT ATTCGATA CTATCGGCGT chrX:19618491-19618611 56 4.75e-04 GTAAAACGAT AGTCGATA GCACGGCAAG chr3R:5467701-5467821 61 4.75e-04 CCTGAAATGT TATCGACA AACGAATGTG chrX:8116140-8116260 62 5.13e-04 TTATTTTGCC AACCGATA GCGACAGTCC chr3L:18865582-18865702 68 5.13e-04 TCGACAAGAA TATCGCTA GTGTAGGAGG chr2R:7709498-7709618 38 5.13e-04 TATTGCAGCA AACCGATA AATCAGAATG chrX:9273135-9273255 67 5.72e-04 TCTTAATAAC AAACGATA GTGTGTTCGA chr2R:9843692-9843812 67 6.93e-04 GAGATCTCCA AATCGATC TGGCAACCCT chr2L:2045374-2045494 39 6.93e-04 TTTATAATTT AATCGATC CTTTCCCTGC chrX:16321149-16321269 25 6.93e-04 CAAAATTATT TTTCGATT ACTTGAAATG chrX:625308-625428 93 6.93e-04 AATAAAAAAA TGTCGATT TTGTCGATGG chrX:16313565-16313685 70 6.93e-04 TAATCGCGAT TTTCGATT TTACACAGTT chrX:9639264-9639384 70 6.93e-04 GCGATGCAGA TGTCGATT GCTCGCGAGT chr3R:5127328-5127448 112 6.93e-04 TAAGGATGTG TTTCGATT A chrX:5746469-5746589 47 6.93e-04 TCGGCACGGT AATCGTTA TCGCCAGAGT chr3L:13040998-13041118 9 6.93e-04 CGTTTAAA TTTCGATT GCTTGTGTCT chr3R:10413166-10413286 77 7.51e-04 ACCTATCAGT AATCGACA GAGCTCGTGC chr3L:3334951-3335071 62 7.70e-04 CTTAGTGAGG AATCGCTA TGAAAGCGTG chr2L:9540376-9540496 94 7.90e-04 CTTAAAATTT GATCGATT CTATATGTTC chr2R:9094561-9094681 86 8.19e-04 CAAGTGCTGC AATCGAAT ATTACCACCC chr3R:9258645-9258765 27 8.96e-04 TTTGTATATT TAACGATT AATTAATCGG chr2R:17792472-17792592 31 1.01e-03 AAACAACGGT TTTCGAAA TCAACGGGAT chr3L:913821-913941 79 1.01e-03 TCCTGGCAGC CATCGAAA TGCAACGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19063254-19063374 3e-05 2_[+1]_110 chrX:10595936-10596056 3e-05 111_[+1]_1 chr2R:22483228-22483348 3e-05 23_[+1]_89 chrX:11090229-11090349 3e-05 75_[+1]_37 chr3R:12995575-12995695 3e-05 51_[+1]_61 chrX:7931372-7931492 3e-05 59_[+1]_53 chr3R:10407264-10407384 3e-05 71_[+1]_41 chr2L:12174891-12175011 3e-05 64_[+1]_48 chr3L:8956726-8956846 3e-05 87_[+1]_25 chr3R:24719531-24719651 3e-05 89_[+1]_23 chr2R:15954954-15955074 3e-05 70_[+1]_42 chr2L:19033450-19033570 3e-05 82_[+1]_30 chrX:16303806-16303926 3e-05 70_[+1]_42 chr2L:7223010-7223130 3e-05 45_[+1]_67 chr2L:19123789-19123909 3e-05 58_[+1]_54 chr3R:15346149-15346269 3e-05 19_[+1]_93 chr2R:21687614-21687734 3e-05 53_[+1]_59 chrX:18893634-18893754 3e-05 39_[+1]_73 chr3R:21406866-21406986 3e-05 46_[+1]_66 chrX:6687424-6687544 3e-05 49_[+1]_63 chrX:1664951-1665071 3e-05 87_[+1]_25 chr3R:5670969-5671089 3e-05 75_[+1]_37 chrX:2172419-2172539 3e-05 35_[+1]_77 chr2R:15676700-15676820 3e-05 85_[+1]_27 chr3R:22381224-22381344 3e-05 74_[+1]_38 chr3L:174656-174776 3e-05 33_[+1]_79 chrX:13606060-13606180 3e-05 55_[+1]_57 chr3L:17035557-17035677 3e-05 72_[+1]_40 chr2R:23972366-23972486 3e-05 53_[+1]_59 chrX:19616085-19616205 3e-05 99_[+1]_13 chr2L:1147725-1147845 3e-05 65_[+1]_47 chr3L:16139246-16139366 3e-05 86_[+1]_26 chrX:5695195-5695315 3e-05 78_[+1]_34 chr2L:4382690-4382810 3e-05 81_[+1]_31 chr3R:19642728-19642848 3e-05 37_[+1]_75 chrX:22482291-22482411 3e-05 69_[+1]_43 chrX:11993384-11993504 3e-05 91_[+1]_21 chr2L:11120279-11120399 3e-05 44_[+1]_68 chr3L:1295010-1295130 3e-05 19_[+1]_93 chr2R:24664337-24664457 3e-05 43_[+1]_69 chr3R:5633534-5633654 3e-05 51_[+1]_61 chrX:10848638-10848758 3e-05 66_[+1]_46 chr3R:9258443-9258563 3e-05 57_[+1]_55 chrX:11092400-11092520 3e-05 77_[+1]_35 chrX:6090211-6090331 3e-05 61_[+1]_51 chr2R:13206659-13206779 3e-05 28_[+1]_84 chr3R:4359410-4359530 3e-05 61_[+1]_51 chrX:12763604-12763724 3e-05 39_[+1]_73 chr3L:5897414-5897534 3e-05 14_[+1]_98 chrX:5873323-5873443 3e-05 17_[+1]_95 chr3L:710334-710454 3e-05 44_[+1]_68 chr3L:7094232-7094352 3e-05 40_[+1]_72 chr2L:10743924-10744044 3e-05 39_[+1]_73 chr2R:8939813-8939933 3e-05 86_[+1]_26 chrX:6689124-6689244 3e-05 72_[+1]_40 chrX:784660-784780 3e-05 19_[+1]_93 chrX:18138414-18138534 3e-05 34_[+1]_78 chr2L:19064854-19064974 3e-05 13_[+1]_99 chr2R:23543971-23544091 3e-05 21_[+1]_91 chr2R:10557169-10557289 3e-05 14_[+1]_98 chr2L:294635-294755 3e-05 66_[+1]_46 chr2R:9165603-9165723 3e-05 84_[+1]_28 chr3R:16652299-16652419 3e-05 78_[+1]_34 chrX:3936405-3936525 3e-05 51_[+1]_61 chr3L:13999330-13999450 3e-05 105_[+1]_7 chr2L:4452987-4453107 3e-05 90_[+1]_22 chr2L:9893373-9893493 3e-05 55_[+1]_57 chr2R:12923787-12923907 3e-05 25_[+1]_87 chrX:6261013-6261133 3e-05 84_[+1]_28 chr2L:1036955-1037075 3e-05 57_[+1]_55 chr2R:10805436-10805556 3e-05 89_[+1]_23 chr2R:23693890-23694010 3e-05 44_[+1]_68 chr3L:15816868-15816988 3e-05 66_[+1]_46 chr2R:7712005-7712125 3e-05 63_[+1]_49 chrX:20656104-20656224 3e-05 58_[+1]_54 chr2R:2856822-2856942 3e-05 82_[+1]_30 chrX:15860035-15860155 3e-05 33_[+1]_79 chr3L:23015852-23015972 3e-05 86_[+1]_26 chr2L:10396602-10396722 3e-05 110_[+1]_2 chr3R:16651104-16651224 3e-05 62_[+1]_50 chr2L:11282023-11282143 5.9e-05 74_[+1]_38 chr3R:27929662-27929782 5.9e-05 55_[+1]_57 chr2R:6746290-6746410 5.9e-05 52_[+1]_60 chr2L:19041722-19041842 5.9e-05 111_[+1]_1 chrX:15486796-15486916 5.9e-05 69_[+1]_43 chr2L:10419090-10419210 5.9e-05 9_[+1]_103 chr2L:13000589-13000709 5.9e-05 91_[+1]_21 chrX:23007607-23007727 5.9e-05 7_[+1]_105 chr2L:454743-454863 5.9e-05 12_[+1]_100 chr2R:24661386-24661506 5.9e-05 45_[+1]_67 chr2R:17056794-17056914 5.9e-05 87_[+1]_25 chr2L:8305483-8305603 5.9e-05 50_[+1]_62 chr3L:17024210-17024330 5.9e-05 85_[+1]_27 chr3R:21878653-21878773 5.9e-05 40_[+1]_72 chr2R:22185920-22186040 5.9e-05 57_[+1]_55 chr3L:13027482-13027602 5.9e-05 50_[+1]_62 chr2L:20427555-20427675 5.9e-05 44_[+1]_68 chrX:11615786-11615906 5.9e-05 66_[+1]_46 chrX:4686900-4687020 5.9e-05 37_[+1]_75 chr3R:14663141-14663261 5.9e-05 77_[+1]_35 chr2R:13039611-13039731 5.9e-05 98_[+1]_14 chr3L:14408835-14408955 5.9e-05 45_[+1]_67 chrX:15345089-15345209 5.9e-05 88_[+1]_24 chrX:15866925-15867045 5.9e-05 86_[+1]_26 chr2R:10805233-10805353 5.9e-05 67_[+1]_45 chr3L:1940956-1941076 9e-05 97_[+1]_15 chr3L:8634062-8634182 9e-05 90_[+1]_22 chr3L:14942906-14943026 9e-05 28_[+1]_84 chrX:15732076-15732196 9e-05 66_[+1]_46 chr3L:15548244-15548364 9e-05 23_[+1]_89 chr2L:10251706-10251826 9e-05 82_[+1]_30 chr2L:8400317-8400437 9e-05 51_[+1]_61 chr2R:18705903-18706023 9e-05 [+1]_112 chr2R:10112213-10112333 9e-05 69_[+1]_43 chrX:2251803-2251923 9e-05 51_[+1]_61 chr3L:8623867-8623987 9e-05 77_[+1]_35 chr2L:11130328-11130448 0.00011 13_[+1]_99 chrX:8240581-8240701 0.00011 51_[+1]_61 chrX:3788586-3788706 0.00011 24_[+1]_88 chr3R:12219631-12219751 0.00011 47_[+1]_65 chrX:5876774-5876894 0.00011 106_[+1]_6 chr2L:2969622-2969742 0.00011 61_[+1]_51 chrX:7324149-7324269 0.00011 42_[+1]_70 chr3R:25056143-25056263 0.00014 60_[+1]_52 chr2L:22121003-22121123 0.00014 59_[+1]_53 chrX:15785544-15785664 0.00014 79_[+1]_33 chrX:16787008-16787128 0.00014 83_[+1]_29 chrX:13090765-13090885 0.00014 19_[+1]_93 chr2R:7021772-7021892 0.00014 68_[+1]_44 chr3L:20491681-20491801 0.00014 79_[+1]_33 chrX:21395593-21395713 0.00014 46_[+1]_66 chr4:834976-835096 0.00017 59_[+1]_53 chrX:1692704-1692824 0.00017 107_[+1]_5 chrX:18884427-18884547 0.00017 33_[+1]_79 chrX:2636874-2636994 0.00017 91_[+1]_21 chr2R:14618263-14618383 0.00017 91_[+1]_21 chrX:12467329-12467449 0.00017 29_[+1]_83 chr3R:15834586-15834706 0.00024 54_[+1]_58 chr2R:17865926-17866046 0.00024 49_[+1]_63 chr2L:19580388-19580508 0.00024 12_[+1]_100 chr3L:12732885-12733005 0.00024 102_[+1]_10 chr2R:17670003-17670123 0.00024 43_[+1]_69 chr2L:455431-455551 0.00024 19_[+1]_93 chr3R:5550611-5550731 0.00026 83_[+1]_29 chr3R:21886944-21887064 0.00026 11_[+1]_101 chrX:16361436-16361556 0.00026 71_[+1]_41 chr2L:19498104-19498224 0.00028 31_[+1]_81 chrX:12018558-12018678 0.00028 43_[+1]_69 chrX:19762327-19762447 0.0003 8_[+1]_104 chr3L:13031475-13031595 0.0003 84_[+1]_28 chr2L:4886329-4886449 0.00033 52_[+1]_60 chrX:13658279-13658399 0.00033 25_[+1]_87 chrX:15701184-15701304 0.00036 94_[+1]_18 chr3R:29993357-29993477 0.00036 44_[+1]_68 chr2R:11360643-11360763 0.00036 57_[+1]_55 chrX:20426998-20427118 0.00041 83_[+1]_29 chrX:17865235-17865355 0.00041 88_[+1]_24 chr2R:21168227-21168347 0.00041 17_[+1]_95 chr3R:16643620-16643740 0.00047 44_[+1]_68 chr3L:13412675-13412795 0.00047 103_[+1]_9 chr2R:17048747-17048867 0.00047 9_[+1]_103 chrX:16553928-16554048 0.00047 26_[+1]_86 chrX:19618491-19618611 0.00047 55_[+1]_57 chr3R:5467701-5467821 0.00047 60_[+1]_52 chrX:8116140-8116260 0.00051 61_[+1]_51 chr3L:18865582-18865702 0.00051 67_[+1]_45 chr2R:7709498-7709618 0.00051 37_[+1]_75 chrX:9273135-9273255 0.00057 66_[+1]_46 chr2R:9843692-9843812 0.00069 66_[+1]_46 chr2L:2045374-2045494 0.00069 38_[+1]_74 chrX:16321149-16321269 0.00069 24_[+1]_88 chrX:625308-625428 0.00069 92_[+1]_20 chrX:16313565-16313685 0.00069 69_[+1]_43 chrX:9639264-9639384 0.00069 69_[+1]_43 chr3R:5127328-5127448 0.00069 111_[+1]_1 chrX:5746469-5746589 0.00069 46_[+1]_66 chr3L:13040998-13041118 0.00069 8_[+1]_104 chr3R:10413166-10413286 0.00075 76_[+1]_36 chr3L:3334951-3335071 0.00077 61_[+1]_51 chr2L:9540376-9540496 0.00079 93_[+1]_19 chr2R:9094561-9094681 0.00082 85_[+1]_27 chr3R:9258645-9258765 0.0009 26_[+1]_86 chr2R:17792472-17792592 0.001 30_[+1]_82 chr3L:913821-913941 0.001 78_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=184 chr2L:19063254-19063374 ( 3) TATCGATA 1 chrX:10595936-10596056 ( 112) TATCGATA 1 chr2R:22483228-22483348 ( 24) TATCGATA 1 chrX:11090229-11090349 ( 76) TATCGATA 1 chr3R:12995575-12995695 ( 52) TATCGATA 1 chrX:7931372-7931492 ( 60) TATCGATA 1 chr3R:10407264-10407384 ( 72) TATCGATA 1 chr2L:12174891-12175011 ( 65) TATCGATA 1 chr3L:8956726-8956846 ( 88) TATCGATA 1 chr3R:24719531-24719651 ( 90) TATCGATA 1 chr2R:15954954-15955074 ( 71) TATCGATA 1 chr2L:19033450-19033570 ( 83) TATCGATA 1 chrX:16303806-16303926 ( 71) TATCGATA 1 chr2L:7223010-7223130 ( 46) TATCGATA 1 chr2L:19123789-19123909 ( 59) TATCGATA 1 chr3R:15346149-15346269 ( 20) TATCGATA 1 chr2R:21687614-21687734 ( 54) TATCGATA 1 chrX:18893634-18893754 ( 40) TATCGATA 1 chr3R:21406866-21406986 ( 47) TATCGATA 1 chrX:6687424-6687544 ( 50) TATCGATA 1 chrX:1664951-1665071 ( 88) TATCGATA 1 chr3R:5670969-5671089 ( 76) TATCGATA 1 chrX:2172419-2172539 ( 36) TATCGATA 1 chr2R:15676700-15676820 ( 86) TATCGATA 1 chr3R:22381224-22381344 ( 75) TATCGATA 1 chr3L:174656-174776 ( 34) TATCGATA 1 chrX:13606060-13606180 ( 56) TATCGATA 1 chr3L:17035557-17035677 ( 73) TATCGATA 1 chr2R:23972366-23972486 ( 54) TATCGATA 1 chrX:19616085-19616205 ( 100) TATCGATA 1 chr2L:1147725-1147845 ( 66) TATCGATA 1 chr3L:16139246-16139366 ( 87) TATCGATA 1 chrX:5695195-5695315 ( 79) TATCGATA 1 chr2L:4382690-4382810 ( 82) TATCGATA 1 chr3R:19642728-19642848 ( 38) TATCGATA 1 chrX:22482291-22482411 ( 70) TATCGATA 1 chrX:11993384-11993504 ( 92) TATCGATA 1 chr2L:11120279-11120399 ( 45) TATCGATA 1 chr3L:1295010-1295130 ( 20) TATCGATA 1 chr2R:24664337-24664457 ( 44) TATCGATA 1 chr3R:5633534-5633654 ( 52) TATCGATA 1 chrX:10848638-10848758 ( 67) TATCGATA 1 chr3R:9258443-9258563 ( 58) TATCGATA 1 chrX:11092400-11092520 ( 78) TATCGATA 1 chrX:6090211-6090331 ( 62) TATCGATA 1 chr2R:13206659-13206779 ( 29) TATCGATA 1 chr3R:4359410-4359530 ( 62) TATCGATA 1 chrX:12763604-12763724 ( 40) TATCGATA 1 chr3L:5897414-5897534 ( 15) TATCGATA 1 chrX:5873323-5873443 ( 18) TATCGATA 1 chr3L:710334-710454 ( 45) TATCGATA 1 chr3L:7094232-7094352 ( 41) TATCGATA 1 chr2L:10743924-10744044 ( 40) TATCGATA 1 chr2R:8939813-8939933 ( 87) TATCGATA 1 chrX:6689124-6689244 ( 73) TATCGATA 1 chrX:784660-784780 ( 20) TATCGATA 1 chrX:18138414-18138534 ( 35) TATCGATA 1 chr2L:19064854-19064974 ( 14) TATCGATA 1 chr2R:23543971-23544091 ( 22) TATCGATA 1 chr2R:10557169-10557289 ( 15) TATCGATA 1 chr2L:294635-294755 ( 67) TATCGATA 1 chr2R:9165603-9165723 ( 85) TATCGATA 1 chr3R:16652299-16652419 ( 79) TATCGATA 1 chrX:3936405-3936525 ( 52) TATCGATA 1 chr3L:13999330-13999450 ( 106) TATCGATA 1 chr2L:4452987-4453107 ( 91) TATCGATA 1 chr2L:9893373-9893493 ( 56) TATCGATA 1 chr2R:12923787-12923907 ( 26) TATCGATA 1 chrX:6261013-6261133 ( 85) TATCGATA 1 chr2L:1036955-1037075 ( 58) TATCGATA 1 chr2R:10805436-10805556 ( 90) TATCGATA 1 chr2R:23693890-23694010 ( 45) TATCGATA 1 chr3L:15816868-15816988 ( 67) TATCGATA 1 chr2R:7712005-7712125 ( 64) TATCGATA 1 chrX:20656104-20656224 ( 59) TATCGATA 1 chr2R:2856822-2856942 ( 83) TATCGATA 1 chrX:15860035-15860155 ( 34) TATCGATA 1 chr3L:23015852-23015972 ( 87) TATCGATA 1 chr2L:10396602-10396722 ( 111) TATCGATA 1 chr3R:16651104-16651224 ( 63) TATCGATA 1 chr2L:11282023-11282143 ( 75) AATCGATA 1 chr3R:27929662-27929782 ( 56) AATCGATA 1 chr2R:6746290-6746410 ( 53) AATCGATA 1 chr2L:19041722-19041842 ( 112) AATCGATA 1 chrX:15486796-15486916 ( 70) AATCGATA 1 chr2L:10419090-10419210 ( 10) AATCGATA 1 chr2L:13000589-13000709 ( 92) AATCGATA 1 chrX:23007607-23007727 ( 8) AATCGATA 1 chr2L:454743-454863 ( 13) AATCGATA 1 chr2R:24661386-24661506 ( 46) AATCGATA 1 chr2R:17056794-17056914 ( 88) AATCGATA 1 chr2L:8305483-8305603 ( 51) AATCGATA 1 chr3L:17024210-17024330 ( 86) AATCGATA 1 chr3R:21878653-21878773 ( 41) AATCGATA 1 chr2R:22185920-22186040 ( 58) AATCGATA 1 chr3L:13027482-13027602 ( 51) AATCGATA 1 chr2L:20427555-20427675 ( 45) AATCGATA 1 chrX:11615786-11615906 ( 67) AATCGATA 1 chrX:4686900-4687020 ( 38) AATCGATA 1 chr3R:14663141-14663261 ( 78) AATCGATA 1 chr2R:13039611-13039731 ( 99) AATCGATA 1 chr3L:14408835-14408955 ( 46) AATCGATA 1 chrX:15345089-15345209 ( 89) AATCGATA 1 chrX:15866925-15867045 ( 87) AATCGATA 1 chr2R:10805233-10805353 ( 68) AATCGATA 1 chr3L:1940956-1941076 ( 98) TATCGATT 1 chr3L:8634062-8634182 ( 91) TATCGATT 1 chr3L:14942906-14943026 ( 29) TATCGATT 1 chrX:15732076-15732196 ( 67) TATCGATT 1 chr3L:15548244-15548364 ( 24) TATCGATT 1 chr2L:10251706-10251826 ( 83) TATCGATT 1 chr2L:8400317-8400437 ( 52) TATCGATT 1 chr2R:18705903-18706023 ( 1) TATCGATT 1 chr2R:10112213-10112333 ( 70) TATCGATT 1 chrX:2251803-2251923 ( 52) TATCGATT 1 chr3L:8623867-8623987 ( 78) TATCGATT 1 chr2L:11130328-11130448 ( 14) TATCGATG 1 chrX:8240581-8240701 ( 52) TATCGATG 1 chrX:3788586-3788706 ( 25) TATCGATG 1 chr3R:12219631-12219751 ( 48) TATCGATG 1 chrX:5876774-5876894 ( 107) TATCGATG 1 chr2L:2969622-2969742 ( 62) TATCGATG 1 chrX:7324149-7324269 ( 43) TATCGATG 1 chr3R:25056143-25056263 ( 61) TATCGAAA 1 chr2L:22121003-22121123 ( 60) TATCGAAA 1 chrX:15785544-15785664 ( 80) TATCGAAA 1 chrX:16787008-16787128 ( 84) TATCGAAA 1 chrX:13090765-13090885 ( 20) TATCGAAA 1 chr2R:7021772-7021892 ( 69) TATCGAAA 1 chr3L:20491681-20491801 ( 80) TATCGAAA 1 chrX:21395593-21395713 ( 47) TATCGAAA 1 chr4:834976-835096 ( 60) AATCGATT 1 chrX:1692704-1692824 ( 108) AATCGATT 1 chrX:18884427-18884547 ( 34) AATCGATT 1 chrX:2636874-2636994 ( 92) AATCGATT 1 chr2R:14618263-14618383 ( 92) AATCGATT 1 chrX:12467329-12467449 ( 30) AATCGATT 1 chr3R:15834586-15834706 ( 55) TGTCGATA 1 chr2R:17865926-17866046 ( 50) CATCGATA 1 chr2L:19580388-19580508 ( 13) CATCGATA 1 chr3L:12732885-12733005 ( 103) TTTCGATA 1 chr2R:17670003-17670123 ( 44) CATCGATA 1 chr2L:455431-455551 ( 20) TGTCGATA 1 chr3R:5550611-5550731 ( 84) TACCGATA 1 chr3R:21886944-21887064 ( 12) TACCGATA 1 chrX:16361436-16361556 ( 72) TACCGATA 1 chr2L:19498104-19498224 ( 32) AATCGATG 1 chrX:12018558-12018678 ( 44) AATCGATG 1 chrX:19762327-19762447 ( 9) GATCGATA 1 chr3L:13031475-13031595 ( 85) GATCGATA 1 chr2L:4886329-4886449 ( 53) AATCGAAA 1 chrX:13658279-13658399 ( 26) AATCGAAA 1 chrX:15701184-15701304 ( 95) TAACGATA 1 chr3R:29993357-29993477 ( 45) TAACGATA 1 chr2R:11360643-11360763 ( 58) TAACGATA 1 chrX:20426998-20427118 ( 84) TATCGTTA 1 chrX:17865235-17865355 ( 89) TATCGTTA 1 chr2R:21168227-21168347 ( 18) TATCGTTA 1 chr3R:16643620-16643740 ( 45) ATTCGATA 1 chr3L:13412675-13412795 ( 104) AGTCGATA 1 chr2R:17048747-17048867 ( 10) ATTCGATA 1 chrX:16553928-16554048 ( 27) ATTCGATA 1 chrX:19618491-19618611 ( 56) AGTCGATA 1 chr3R:5467701-5467821 ( 61) TATCGACA 1 chrX:8116140-8116260 ( 62) AACCGATA 1 chr3L:18865582-18865702 ( 68) TATCGCTA 1 chr2R:7709498-7709618 ( 38) AACCGATA 1 chrX:9273135-9273255 ( 67) AAACGATA 1 chr2R:9843692-9843812 ( 67) AATCGATC 1 chr2L:2045374-2045494 ( 39) AATCGATC 1 chrX:16321149-16321269 ( 25) TTTCGATT 1 chrX:625308-625428 ( 93) TGTCGATT 1 chrX:16313565-16313685 ( 70) TTTCGATT 1 chrX:9639264-9639384 ( 70) TGTCGATT 1 chr3R:5127328-5127448 ( 112) TTTCGATT 1 chrX:5746469-5746589 ( 47) AATCGTTA 1 chr3L:13040998-13041118 ( 9) TTTCGATT 1 chr3R:10413166-10413286 ( 77) AATCGACA 1 chr3L:3334951-3335071 ( 62) AATCGCTA 1 chr2L:9540376-9540496 ( 94) GATCGATT 1 chr2R:9094561-9094681 ( 86) AATCGAAT 1 chr3R:9258645-9258765 ( 27) TAACGATT 1 chr2R:17792472-17792592 ( 31) TTTCGAAA 1 chr3L:913821-913941 ( 79) CATCGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.65782 E= 2.6e-176 -17 -317 -360 118 162 -1417 -260 -265 -346 -285 -1417 162 -1417 235 -1417 -1417 -1417 -1417 234 -1417 169 -417 -1417 -382 -208 -417 -1417 158 142 -417 -201 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 184 E= 2.6e-176 0.266304 0.021739 0.016304 0.695652 0.918478 0.000000 0.032609 0.048913 0.027174 0.027174 0.000000 0.945652 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.967391 0.010870 0.000000 0.021739 0.070652 0.010870 0.000000 0.918478 0.798913 0.010870 0.048913 0.141304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]ATCGATA -------------------------------------------------------------------------------- Time 7.28 secs. ******************************************************************************** ******************************************************************************** MOTIF CARVSYTG MEME-2 width = 8 sites = 80 llr = 648 E-value = 1.9e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARVSYTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a42:::: pos.-specific C a::536:: probability G ::636::a matrix T :::114a: bits 2.4 * * 2.1 * * 1.9 * * 1.6 ** ** Relative 1.4 ** ** Entropy 1.2 *** *** (11.7 bits) 0.9 *** **** 0.7 *** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCGCTG consensus AGCT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARVSYTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21687614-21687734 32 5.30e-06 ATGGCAAAGT CAGCGCTG CATTTTGCCG chr2L:1036955-1037075 7 5.30e-06 TCAGAG CAGCGCTG CTAACGCCTA chr3R:25056143-25056263 41 1.06e-05 TATCGGACTG CAGGGCTG CCATTCGTAA chrX:6687424-6687544 26 1.06e-05 ATAACCGCAC CAGGGCTG AGCCGATTGC chrX:15785544-15785664 15 1.06e-05 GGTATTTTTC CAGGGCTG GAAAGTGTTG chrX:22482291-22482411 86 1.06e-05 TATCTGACGT CAGGGCTG CATGGACTTC chrX:2636874-2636994 65 1.06e-05 AAGGAGGCGA CAGGGCTG ACATCATTTT chrX:16787008-16787128 20 1.06e-05 GGTATTTTTC CAGGGCTG GAAATTGCTG chrX:15701184-15701304 30 1.06e-05 GTGTAAAAAT CAGGGCTG CACAGGCGGC chr3L:8956726-8956846 74 1.59e-05 ATGTTGAATG CAGCCCTG GCTGTTTATC chr4:834976-835096 35 1.59e-05 GTATTAAACT CAGCCCTG CATTCCGATT chrX:19762327-19762447 51 1.59e-05 CTCGTCGATG CAGCCCTG GTCAATTCGT chr2R:24664337-24664457 80 1.59e-05 TACGTCTCAG CAGCCCTG GATCTAAATC chr3L:13040998-13041118 56 1.59e-05 GCGCACAATG CAGCCCTG GCAATTATGG chr2R:22874611-22874731 100 1.59e-05 CACACCCTTC CAGCCCTG CCGACCTTCC chr2L:2045374-2045494 104 2.42e-05 TCTTCTGTGG CAGCGTTG CCAGATGCT chr2L:4886329-4886449 30 2.42e-05 GATCCAAAAA CAGCGTTG CATTTTTGGC chrX:13658279-13658399 48 3.23e-05 GCCTGGAAAG CAACGCTG GATAAAAAAG chrX:13738036-13738156 53 3.23e-05 ATCGTAACGG CAACGCTG TGTGTTAACA chr3L:8634062-8634182 67 4.04e-05 AGCTCTAGCC CAGAGCTG CCTATTGTCG chr2R:10049395-10049515 64 4.04e-05 ACGTAATCAG CAGAGCTG CACGGCAGCT chrX:15345089-15345209 71 4.04e-05 CGCACCGTAA CAGAGCTG TTAATGCTGT chr3R:24719531-24719651 107 5.40e-05 ACGTTTGTGC CAGGGTTG TTCGTC chr3L:13949808-13949928 67 5.40e-05 ACATTAAAAA CAGGGTTG TATTGTAAAT chr2R:13206659-13206779 45 5.40e-05 TATCCACTAT CAGGGTTG CCACATTTTC chrX:4702966-4703086 58 5.40e-05 tgtgtAAGTG CAGGGTTG CATTTTGCCG chrX:2012072-2012192 75 5.40e-05 CGCCCACAAG CAGGGTTG CATGCACGCC chr2L:20735453-20735573 72 5.40e-05 ATATGTTGCG CAGGGTTG CAATAGGCGC chr3R:23902695-23902815 75 5.40e-05 CTTTGACAGC CAGGGTTG CCGTGGCGCC chr2R:12958771-12958891 72 7.84e-05 ATGTTGCATG CAACCCTG TTTTGCTTTT chr2R:17792472-17792592 70 7.84e-05 AATGTAAGTG CAACCCTG CCGAAAGTTT chr2L:17590046-17590166 88 7.84e-05 TTTTCTTATG CAACCCTG CATCATAATA chr2L:4382690-4382810 48 7.84e-05 CAACAACGGG CAACCCTG TTTTCAGCGT chrX:6533888-6534008 39 7.84e-05 CCAGTTATGC CAACCCTG AAACTACCGA chr3R:7135958-7136078 67 7.84e-05 CCCCGAAATG CAACCCTG CGCGGCAAAA chrX:5876774-5876894 56 7.84e-05 GCGTGAAATG CAACCCTG ATTTATCACA chr3R:4359410-4359530 39 7.84e-05 TTCTCCATAA CAACCCTG CACGAGGAGC chr4:855234-855354 58 7.84e-05 GGTTCCAATG CAACCCTG ACGAGTATGA chr2R:23543971-23544091 48 7.84e-05 GCAATTGGTG CAACCCTG TCTGCTAATC chr2R:13159957-13160077 40 7.84e-05 GCGCATTTAG CAACCCTG TGCTCGTGAC chr2L:1419790-1419910 58 7.84e-05 TCCCACAATG CAACCCTG CGAATGCAAC chr3L:23015852-23015972 72 7.84e-05 CAATCAAATA CAACCCTG GCTCTCTTAT chr2R:21168227-21168347 45 7.84e-05 GGCCAAAAAG CAACCCTG AGCGGTGCTG chr2L:11120279-11120399 11 9.11e-05 AAAATTCAAG CAACGTTG ACAGGCACCA chrX:12018558-12018678 24 9.11e-05 TTGTTTGCAG CAACGTTG CCAGACTTCC chrX:784660-784780 100 9.91e-05 AGCCAAGTTG CAGACCTG CAGACCGGTT chr3R:16643620-16643740 26 1.12e-04 ACTTTTAAAA CAGAGTTG TAAAGGGAAA chrX:11351080-11351200 74 1.12e-04 gcagcagcag cagagttg cagcGAGAGA chr3L:16566916-16567036 70 1.12e-04 GCATTCTAAG CAGAGTTG CCAGCCTGGC chr2R:7380873-7380993 71 1.12e-04 ACGGTAATCA CAGAGTTG CTTTTCTGCG chrX:18138414-18138534 69 1.12e-04 TCGGTTGATA CAGAGTTG CACTGGCAAT chrX:16553928-16554048 2 1.12e-04 C CAGAGTTG AATAAAAATA chr3L:13031475-13031595 46 1.12e-04 AAAAAAGACA CAGAGTTG TAAAGAAAAC chrX:5746469-5746589 59 1.12e-04 TCGTTATCGC CAGAGTTG CAAGCGCCCG chr2L:8123932-8124052 75 1.12e-04 GTACACAGTG CAGAGTTG CTAGTGATTG chr3R:12995575-12995695 62 1.32e-04 TATCGATATA CAAAGCTG TTGTGTAAAT chr3R:7155089-7155209 91 1.40e-04 TGAAAGTGTA CAAGCCTG GCGTTGCCAG chr3L:1295010-1295130 47 1.53e-04 CACGGCAAGG CAAGGTTG CATTTTGATG chr2R:14618263-14618383 67 1.53e-04 AACTTACATG CAAGGTTG CACATTATCG chrX:9639264-9639384 49 1.53e-04 TTTGCGAGTG CAAGGTTG CATGCGATGC chr2R:7940670-7940790 72 1.53e-04 AACTCTTTTG CAAGGTTG CATTTTTTTG chr2L:454743-454863 34 1.66e-04 TGCATTATTG CAACCTTG GCTCAGCTGT chr2L:455431-455551 5 1.66e-04 ATTG CAACCTTG GCTCAGCTGT chr3L:7510528-7510648 65 1.82e-04 TCAATGCTAA CAGTGCTG TATTCTTCTT chrX:23007607-23007727 22 1.82e-04 GATAGCATTC CAGCTCTG CATGCATCTA chr2R:10557169-10557289 90 1.82e-04 AACTAGGTGG CAGCTCTG AAATGTATAT chr3L:15816868-15816988 54 1.82e-04 CGACATTAAG CAGCTCTG CATTGTATCG chr2R:7709498-7709618 56 1.82e-04 AATCAGAATG CAGTGCTG GTCGCTTCCA chr3R:19642728-19642848 87 2.27e-04 GATAACAACT CAAAGTTG GACAGATTCA chrX:11993384-11993504 66 2.27e-04 gatatcaaca caaagttg tattgatata chr3L:20491681-20491801 46 2.48e-04 GGTAAGTGGA CAGGTCTG ACTGATAAGA chr3R:9258443-9258563 29 2.82e-04 AATTACGTGA CAGTGTTG CTGCTGTAAA chr2L:19530260-19530380 41 2.82e-04 CTGTCTATTA CAGTGTTG CATGATAACC chr2R:7712005-7712125 82 2.82e-04 AGACGGCAAA CAGTGTTG ATCAACGATC chr3R:13013122-13013242 61 3.07e-04 GACAGACAAG CAACTCTG GGCTCCCCCC chrX:17865235-17865355 64 3.07e-04 TTCCAAAATG CAACTCTG CCCAAATAAC chrX:13090765-13090885 2 3.26e-04 T CAAACTTG CAACATTACG chr2R:12923787-12923907 98 3.26e-04 CCGCTCCGGT CAAACTTG CTATTTCATT chr2L:5093865-5093985 35 3.52e-04 GCCCATTTAT CAGGTTTG TGAAATTAAC chr2L:10743924-10744044 22 4.77e-04 AAATATCTGG CAGCACTG TCTTAAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARVSYTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21687614-21687734 5.3e-06 31_[+2]_81 chr2L:1036955-1037075 5.3e-06 6_[+2]_106 chr3R:25056143-25056263 1.1e-05 40_[+2]_72 chrX:6687424-6687544 1.1e-05 25_[+2]_87 chrX:15785544-15785664 1.1e-05 14_[+2]_98 chrX:22482291-22482411 1.1e-05 85_[+2]_27 chrX:2636874-2636994 1.1e-05 64_[+2]_48 chrX:16787008-16787128 1.1e-05 19_[+2]_93 chrX:15701184-15701304 1.1e-05 29_[+2]_83 chr3L:8956726-8956846 1.6e-05 73_[+2]_39 chr4:834976-835096 1.6e-05 34_[+2]_78 chrX:19762327-19762447 1.6e-05 50_[+2]_62 chr2R:24664337-24664457 1.6e-05 79_[+2]_33 chr3L:13040998-13041118 1.6e-05 55_[+2]_57 chr2R:22874611-22874731 1.6e-05 99_[+2]_13 chr2L:2045374-2045494 2.4e-05 103_[+2]_9 chr2L:4886329-4886449 2.4e-05 29_[+2]_83 chrX:13658279-13658399 3.2e-05 47_[+2]_65 chrX:13738036-13738156 3.2e-05 52_[+2]_60 chr3L:8634062-8634182 4e-05 66_[+2]_46 chr2R:10049395-10049515 4e-05 63_[+2]_49 chrX:15345089-15345209 4e-05 70_[+2]_42 chr3R:24719531-24719651 5.4e-05 106_[+2]_6 chr3L:13949808-13949928 5.4e-05 66_[+2]_46 chr2R:13206659-13206779 5.4e-05 44_[+2]_68 chrX:4702966-4703086 5.4e-05 57_[+2]_55 chrX:2012072-2012192 5.4e-05 74_[+2]_38 chr2L:20735453-20735573 5.4e-05 71_[+2]_41 chr3R:23902695-23902815 5.4e-05 74_[+2]_38 chr2R:12958771-12958891 7.8e-05 71_[+2]_41 chr2R:17792472-17792592 7.8e-05 69_[+2]_43 chr2L:17590046-17590166 7.8e-05 87_[+2]_25 chr2L:4382690-4382810 7.8e-05 47_[+2]_65 chrX:6533888-6534008 7.8e-05 38_[+2]_74 chr3R:7135958-7136078 7.8e-05 66_[+2]_46 chrX:5876774-5876894 7.8e-05 55_[+2]_57 chr3R:4359410-4359530 7.8e-05 38_[+2]_74 chr4:855234-855354 7.8e-05 57_[+2]_55 chr2R:23543971-23544091 7.8e-05 47_[+2]_65 chr2R:13159957-13160077 7.8e-05 39_[+2]_73 chr2L:1419790-1419910 7.8e-05 57_[+2]_55 chr3L:23015852-23015972 7.8e-05 71_[+2]_41 chr2R:21168227-21168347 7.8e-05 44_[+2]_68 chr2L:11120279-11120399 9.1e-05 10_[+2]_102 chrX:12018558-12018678 9.1e-05 23_[+2]_89 chrX:784660-784780 9.9e-05 99_[+2]_13 chr3R:16643620-16643740 0.00011 25_[+2]_87 chrX:11351080-11351200 0.00011 73_[+2]_39 chr3L:16566916-16567036 0.00011 69_[+2]_43 chr2R:7380873-7380993 0.00011 70_[+2]_42 chrX:18138414-18138534 0.00011 68_[+2]_44 chrX:16553928-16554048 0.00011 1_[+2]_111 chr3L:13031475-13031595 0.00011 45_[+2]_67 chrX:5746469-5746589 0.00011 58_[+2]_54 chr2L:8123932-8124052 0.00011 74_[+2]_38 chr3R:12995575-12995695 0.00013 61_[+2]_51 chr3R:7155089-7155209 0.00014 90_[+2]_22 chr3L:1295010-1295130 0.00015 46_[+2]_66 chr2R:14618263-14618383 0.00015 66_[+2]_46 chrX:9639264-9639384 0.00015 48_[+2]_64 chr2R:7940670-7940790 0.00015 71_[+2]_41 chr2L:454743-454863 0.00017 33_[+2]_79 chr2L:455431-455551 0.00017 4_[+2]_108 chr3L:7510528-7510648 0.00018 64_[+2]_48 chrX:23007607-23007727 0.00018 21_[+2]_91 chr2R:10557169-10557289 0.00018 89_[+2]_23 chr3L:15816868-15816988 0.00018 53_[+2]_59 chr2R:7709498-7709618 0.00018 55_[+2]_57 chr3R:19642728-19642848 0.00023 86_[+2]_26 chrX:11993384-11993504 0.00023 65_[+2]_47 chr3L:20491681-20491801 0.00025 45_[+2]_67 chr3R:9258443-9258563 0.00028 28_[+2]_84 chr2L:19530260-19530380 0.00028 40_[+2]_72 chr2R:7712005-7712125 0.00028 81_[+2]_31 chr3R:13013122-13013242 0.00031 60_[+2]_52 chrX:17865235-17865355 0.00031 63_[+2]_49 chrX:13090765-13090885 0.00033 1_[+2]_111 chr2R:12923787-12923907 0.00033 97_[+2]_15 chr2L:5093865-5093985 0.00035 34_[+2]_78 chr2L:10743924-10744044 0.00048 21_[+2]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARVSYTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARVSYTG width=8 seqs=80 chr2R:21687614-21687734 ( 32) CAGCGCTG 1 chr2L:1036955-1037075 ( 7) CAGCGCTG 1 chr3R:25056143-25056263 ( 41) CAGGGCTG 1 chrX:6687424-6687544 ( 26) CAGGGCTG 1 chrX:15785544-15785664 ( 15) CAGGGCTG 1 chrX:22482291-22482411 ( 86) CAGGGCTG 1 chrX:2636874-2636994 ( 65) CAGGGCTG 1 chrX:16787008-16787128 ( 20) CAGGGCTG 1 chrX:15701184-15701304 ( 30) CAGGGCTG 1 chr3L:8956726-8956846 ( 74) CAGCCCTG 1 chr4:834976-835096 ( 35) CAGCCCTG 1 chrX:19762327-19762447 ( 51) CAGCCCTG 1 chr2R:24664337-24664457 ( 80) CAGCCCTG 1 chr3L:13040998-13041118 ( 56) CAGCCCTG 1 chr2R:22874611-22874731 ( 100) CAGCCCTG 1 chr2L:2045374-2045494 ( 104) CAGCGTTG 1 chr2L:4886329-4886449 ( 30) CAGCGTTG 1 chrX:13658279-13658399 ( 48) CAACGCTG 1 chrX:13738036-13738156 ( 53) CAACGCTG 1 chr3L:8634062-8634182 ( 67) CAGAGCTG 1 chr2R:10049395-10049515 ( 64) CAGAGCTG 1 chrX:15345089-15345209 ( 71) CAGAGCTG 1 chr3R:24719531-24719651 ( 107) CAGGGTTG 1 chr3L:13949808-13949928 ( 67) CAGGGTTG 1 chr2R:13206659-13206779 ( 45) CAGGGTTG 1 chrX:4702966-4703086 ( 58) CAGGGTTG 1 chrX:2012072-2012192 ( 75) CAGGGTTG 1 chr2L:20735453-20735573 ( 72) CAGGGTTG 1 chr3R:23902695-23902815 ( 75) CAGGGTTG 1 chr2R:12958771-12958891 ( 72) CAACCCTG 1 chr2R:17792472-17792592 ( 70) CAACCCTG 1 chr2L:17590046-17590166 ( 88) CAACCCTG 1 chr2L:4382690-4382810 ( 48) CAACCCTG 1 chrX:6533888-6534008 ( 39) CAACCCTG 1 chr3R:7135958-7136078 ( 67) CAACCCTG 1 chrX:5876774-5876894 ( 56) CAACCCTG 1 chr3R:4359410-4359530 ( 39) CAACCCTG 1 chr4:855234-855354 ( 58) CAACCCTG 1 chr2R:23543971-23544091 ( 48) CAACCCTG 1 chr2R:13159957-13160077 ( 40) CAACCCTG 1 chr2L:1419790-1419910 ( 58) CAACCCTG 1 chr3L:23015852-23015972 ( 72) CAACCCTG 1 chr2R:21168227-21168347 ( 45) CAACCCTG 1 chr2L:11120279-11120399 ( 11) CAACGTTG 1 chrX:12018558-12018678 ( 24) CAACGTTG 1 chrX:784660-784780 ( 100) CAGACCTG 1 chr3R:16643620-16643740 ( 26) CAGAGTTG 1 chrX:11351080-11351200 ( 74) CAGAGTTG 1 chr3L:16566916-16567036 ( 70) CAGAGTTG 1 chr2R:7380873-7380993 ( 71) CAGAGTTG 1 chrX:18138414-18138534 ( 69) CAGAGTTG 1 chrX:16553928-16554048 ( 2) CAGAGTTG 1 chr3L:13031475-13031595 ( 46) CAGAGTTG 1 chrX:5746469-5746589 ( 59) CAGAGTTG 1 chr2L:8123932-8124052 ( 75) CAGAGTTG 1 chr3R:12995575-12995695 ( 62) CAAAGCTG 1 chr3R:7155089-7155209 ( 91) CAAGCCTG 1 chr3L:1295010-1295130 ( 47) CAAGGTTG 1 chr2R:14618263-14618383 ( 67) CAAGGTTG 1 chrX:9639264-9639384 ( 49) CAAGGTTG 1 chr2R:7940670-7940790 ( 72) CAAGGTTG 1 chr2L:454743-454863 ( 34) CAACCTTG 1 chr2L:455431-455551 ( 5) CAACCTTG 1 chr3L:7510528-7510648 ( 65) CAGTGCTG 1 chrX:23007607-23007727 ( 22) CAGCTCTG 1 chr2R:10557169-10557289 ( 90) CAGCTCTG 1 chr3L:15816868-15816988 ( 54) CAGCTCTG 1 chr2R:7709498-7709618 ( 56) CAGTGCTG 1 chr3R:19642728-19642848 ( 87) CAAAGTTG 1 chrX:11993384-11993504 ( 66) CAAAGTTG 1 chr3L:20491681-20491801 ( 46) CAGGTCTG 1 chr3R:9258443-9258563 ( 29) CAGTGTTG 1 chr2L:19530260-19530380 ( 41) CAGTGTTG 1 chr2R:7712005-7712125 ( 82) CAGTGTTG 1 chr3R:13013122-13013242 ( 61) CAACTCTG 1 chrX:17865235-17865355 ( 64) CAACTCTG 1 chrX:13090765-13090885 ( 2) CAAACTTG 1 chr2R:12923787-12923907 ( 98) CAAACTTG 1 chr2L:5093865-5093985 ( 35) CAGGTTTG 1 chr2L:10743924-10744044 ( 22) CAGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARVSYTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.40533 E= 1.9e-030 -1297 235 -1297 -1297 174 -1297 -1297 -1297 42 -1297 160 -1297 -41 120 41 -230 -458 73 154 -182 -1297 156 -1297 46 -1297 -1297 -1297 170 -1297 -1297 234 -1297 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARVSYTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 1.9e-030 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.225000 0.450000 0.262500 0.062500 0.012500 0.325000 0.575000 0.087500 0.000000 0.575000 0.000000 0.425000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARVSYTG MEME-2 regular expression -------------------------------------------------------------------------------- CA[GA][CGA][GC][CT]TG -------------------------------------------------------------------------------- Time 13.23 secs. ******************************************************************************** ******************************************************************************** MOTIF AWCAGCTG MEME-3 width = 8 sites = 35 llr = 327 E-value = 4.3e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 73:a:::: pos.-specific C 21a::a:: probability G 12::a::a matrix T :4::::a: bits 2.4 * ** * 2.1 * ** * 1.9 * ** * 1.6 **** * Relative 1.4 ****** Entropy 1.2 ****** (13.5 bits) 0.9 ****** 0.7 * ****** 0.5 * ****** 0.2 * ****** 0.0 -------- Multilevel ATCAGCTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9846473-9846593 2 1.26e-05 C ATCAGCTG TGAGCGATAA chrX:20426998-20427118 43 1.26e-05 GCGCTTCACC ATCAGCTG TTGCCGAgtt chr3R:5670969-5671089 95 1.26e-05 GATGCAGGCG ATCAGCTG ACCATGTTTA chrX:15486796-15486916 106 1.26e-05 CAATAACAAA ATCAGCTG ACGATAG chr3L:17035557-17035677 103 1.26e-05 CTCTGCTCCA ATCAGCTG TTATGTTATG chr2R:24664337-24664457 95 1.26e-05 CTGGATCTAA ATCAGCTG TTGTGTTGTA chr3R:16652299-16652419 15 1.26e-05 TTGACTCATA ATCAGCTG ATTAGTCATA chrX:20656104-20656224 101 1.26e-05 CGAAAATCAA ATCAGCTG AACCGCAACA chr3L:8634062-8634182 24 2.49e-05 CGCCACGAGC AACAGCTG ATCAAGCCTG chr2L:17590046-17590166 40 2.49e-05 GGCGCTACCG AACAGCTG AGCATACGAG chr3R:21878653-21878773 27 2.49e-05 TTATCGAATC AACAGCTG TTCTGCAATC chr2L:19530260-19530380 26 2.49e-05 GTTTACTGGA AACAGCTG TCTATTACAG chrX:19618491-19618611 23 2.49e-05 TGACGAGCGG AACAGCTG ATTAGTCTGT chr2R:23693890-23694010 101 2.49e-05 AAGAAGTGAA AACAGCTG ACAGCAGCAG chr2R:11360643-11360763 95 2.49e-05 AACAATCAGG AACAGCTG AGGCGCTTAA chr2R:15954954-15955074 85 3.30e-05 GATAATCGAT AGCAGCTG TGGCCCAATG chr3R:15268567-15268687 87 3.30e-05 TTCGCACGAA AGCAGCTG CACACACTTC chr3R:12219631-12219751 22 3.30e-05 ATAACAAGGG AGCAGCTG TAATAAAATC chr2R:10805233-10805353 12 3.30e-05 CGTCCGTATC AGCAGCTG TTCTCTTCTT chrX:7324149-7324269 59 3.30e-05 TGACGATTGC AGCAGCTG CATGCAACCG chr2R:6746290-6746410 80 4.11e-05 ATAGCGATCG ACCAGCTG TTGCTGTTAT chr2L:19498104-19498224 1 4.11e-05 . ACCAGCTG GATTGACAGC chrX:5695195-5695315 32 4.11e-05 GGTGCGGATA ACCAGCTG TTTTGCTATC chr2L:11120279-11120399 25 4.11e-05 GTTGACAGGC ACCAGCTG TTTGTCTTAT chr2L:19033450-19033570 5 4.93e-05 AGCT CTCAGCTG TTGCACTAAA chr2L:454743-454863 43 4.93e-05 GCAACCTTGG CTCAGCTG TCGATAACTG chr2L:2045374-2045494 60 5.74e-05 TCCCTGCTGC CACAGCTG ATCGCCGAGT chrX:15785544-15785664 53 5.74e-05 TTGCACTTGG CACAGCTG AAAAAGATGT chrX:15701184-15701304 47 6.27e-05 GCACAGGCGG CGCAGCTG AGCGGCCAGC chr2R:5143666-5143786 20 7.10e-05 cactttcaaa gtcagctg attcagaggt chr3R:13699487-13699607 52 7.10e-05 ACTGTCAGCA GTCAGCTG TTCGTCGCTC chr2R:13206659-13206779 68 7.10e-05 TTTTCAGCCG GTCAGCTG TTGCTTCCGA chrX:8116140-8116260 8 8.44e-05 GAATGTG CCCAGCTG CTGTTATGCC chr2L:8123932-8124052 55 8.44e-05 GATTCGTTTT GACAGCTG ACGTACACAG chr2L:9893373-9893493 15 1.11e-04 ATTTATACGC AACAGCGG TTTGATTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9846473-9846593 1.3e-05 1_[+3]_111 chrX:20426998-20427118 1.3e-05 42_[+3]_70 chr3R:5670969-5671089 1.3e-05 94_[+3]_18 chrX:15486796-15486916 1.3e-05 105_[+3]_7 chr3L:17035557-17035677 1.3e-05 102_[+3]_10 chr2R:24664337-24664457 1.3e-05 94_[+3]_18 chr3R:16652299-16652419 1.3e-05 14_[+3]_98 chrX:20656104-20656224 1.3e-05 100_[+3]_12 chr3L:8634062-8634182 2.5e-05 23_[+3]_89 chr2L:17590046-17590166 2.5e-05 39_[+3]_73 chr3R:21878653-21878773 2.5e-05 26_[+3]_86 chr2L:19530260-19530380 2.5e-05 25_[+3]_87 chrX:19618491-19618611 2.5e-05 22_[+3]_90 chr2R:23693890-23694010 2.5e-05 100_[+3]_12 chr2R:11360643-11360763 2.5e-05 94_[+3]_18 chr2R:15954954-15955074 3.3e-05 84_[+3]_28 chr3R:15268567-15268687 3.3e-05 86_[+3]_26 chr3R:12219631-12219751 3.3e-05 21_[+3]_91 chr2R:10805233-10805353 3.3e-05 11_[+3]_101 chrX:7324149-7324269 3.3e-05 58_[+3]_54 chr2R:6746290-6746410 4.1e-05 79_[+3]_33 chr2L:19498104-19498224 4.1e-05 [+3]_112 chrX:5695195-5695315 4.1e-05 31_[+3]_81 chr2L:11120279-11120399 4.1e-05 24_[+3]_88 chr2L:19033450-19033570 4.9e-05 4_[+3]_108 chr2L:454743-454863 4.9e-05 42_[+3]_70 chr2L:2045374-2045494 5.7e-05 59_[+3]_53 chrX:15785544-15785664 5.7e-05 52_[+3]_60 chrX:15701184-15701304 6.3e-05 46_[+3]_66 chr2R:5143666-5143786 7.1e-05 19_[+3]_93 chr3R:13699487-13699607 7.1e-05 51_[+3]_61 chr2R:13206659-13206779 7.1e-05 67_[+3]_45 chrX:8116140-8116260 8.4e-05 7_[+3]_105 chr2L:8123932-8124052 8.4e-05 54_[+3]_58 chr2L:9893373-9893493 0.00011 14_[+3]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCAGCTG width=8 seqs=35 chr2R:9846473-9846593 ( 2) ATCAGCTG 1 chrX:20426998-20427118 ( 43) ATCAGCTG 1 chr3R:5670969-5671089 ( 95) ATCAGCTG 1 chrX:15486796-15486916 ( 106) ATCAGCTG 1 chr3L:17035557-17035677 ( 103) ATCAGCTG 1 chr2R:24664337-24664457 ( 95) ATCAGCTG 1 chr3R:16652299-16652419 ( 15) ATCAGCTG 1 chrX:20656104-20656224 ( 101) ATCAGCTG 1 chr3L:8634062-8634182 ( 24) AACAGCTG 1 chr2L:17590046-17590166 ( 40) AACAGCTG 1 chr3R:21878653-21878773 ( 27) AACAGCTG 1 chr2L:19530260-19530380 ( 26) AACAGCTG 1 chrX:19618491-19618611 ( 23) AACAGCTG 1 chr2R:23693890-23694010 ( 101) AACAGCTG 1 chr2R:11360643-11360763 ( 95) AACAGCTG 1 chr2R:15954954-15955074 ( 85) AGCAGCTG 1 chr3R:15268567-15268687 ( 87) AGCAGCTG 1 chr3R:12219631-12219751 ( 22) AGCAGCTG 1 chr2R:10805233-10805353 ( 12) AGCAGCTG 1 chrX:7324149-7324269 ( 59) AGCAGCTG 1 chr2R:6746290-6746410 ( 80) ACCAGCTG 1 chr2L:19498104-19498224 ( 1) ACCAGCTG 1 chrX:5695195-5695315 ( 32) ACCAGCTG 1 chr2L:11120279-11120399 ( 25) ACCAGCTG 1 chr2L:19033450-19033570 ( 5) CTCAGCTG 1 chr2L:454743-454863 ( 43) CTCAGCTG 1 chr2L:2045374-2045494 ( 60) CACAGCTG 1 chrX:15785544-15785664 ( 53) CACAGCTG 1 chrX:15701184-15701304 ( 47) CGCAGCTG 1 chr2R:5143666-5143786 ( 20) GTCAGCTG 1 chr3R:13699487-13699607 ( 52) GTCAGCTG 1 chr2R:13206659-13206779 ( 68) GTCAGCTG 1 chrX:8116140-8116260 ( 8) CCCAGCTG 1 chr2L:8123932-8124052 ( 55) GACAGCTG 1 chr2L:9893373-9893493 ( 15) AACAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.7575 E= 4.3e-012 126 -19 -79 -1177 7 -45 -20 27 -1177 235 -1177 -1177 174 -1177 -1177 -1177 -1177 -1177 234 -1177 -1177 235 -1177 -1177 -1177 -1177 -279 166 -1177 -1177 234 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.3e-012 0.714286 0.171429 0.114286 0.000000 0.314286 0.142857 0.171429 0.371429 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.971429 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 regular expression -------------------------------------------------------------------------------- A[TA]CAGCTG -------------------------------------------------------------------------------- Time 19.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GYTATCGA MEME-4 width = 8 sites = 80 llr = 609 E-value = 1.6e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYTATCGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 112a:::6 pos.-specific C 251::a:3 probability G 6:::::a2 matrix T 147:a::: bits 2.4 ** 2.1 ** 1.9 ** 1.6 **** Relative 1.4 **** Entropy 1.2 **** (11.0 bits) 0.9 **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTATCGA consensus CTA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTATCGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19033450-19033570 52 1.26e-05 CTGCACGACA GCTATCGA AAGCCATTGA chrX:1692704-1692824 92 1.26e-05 AGCGCATGTG GCTATCGA ATGGCTCCAA chr3L:17035557-17035677 50 1.26e-05 AAGTACTAAA GCTATCGA TGGCCGCATT chr2L:10419090-10419210 83 1.26e-05 CATTCATCGA GCTATCGA TTTTTACCGG chrX:11615786-11615906 94 1.26e-05 CATGACGTCT GCTATCGA AATTATTCGA chr2R:10049395-10049515 79 1.26e-05 CTGCACGGCA GCTATCGA CCATTTGTCA chr2R:13039611-13039731 91 1.26e-05 ATTGATGCCA GCTATCGA AATCGATAGC chr2R:10805436-10805556 4 1.26e-05 GGA GCTATCGA CGCCATTGGT chrX:5695195-5695315 44 2.09e-05 CAGCTGTTTT GCTATCGC CTTTCGATCG chrX:12763604-12763724 12 2.09e-05 TGTGCGAGTT GCTATCGC CATCGGAGTT chr2R:7712005-7712125 39 2.09e-05 TGAATAAGCA GCTATCGC TATTGATAGC chr2L:5093865-5093985 112 4.08e-05 AATACATTTA GTTATCGA T chr2L:4382690-4382810 69 4.08e-05 TCAGCGTATT GTTATCGA GCGCTTATCG chr2R:24664337-24664457 14 4.08e-05 TTGTGAGCCT GTTATCGA TGACTTTGTG chr2R:13206659-13206779 104 4.08e-05 TGCATCTTCT GTTATCGA TTGGCGGCA chr2R:9165603-9165723 36 4.08e-05 TAGCCGCACT GTTATCGA TTATTTATAA chrX:19618491-19618611 91 4.08e-05 ATCAGTGTGC GTTATCGA GTTTAAAATA chrX:7324149-7324269 24 4.08e-05 AAAACCATAA GTTATCGA TCGCCATTAG chrX:10848638-10848758 47 4.91e-05 GTTTAAAAAA GCTATCGG CAACATGAAA chrX:2251803-2251923 100 4.91e-05 TCTGCTATCG GCTATCGG ACGCAGCAAT chrX:19762327-19762447 26 6.17e-05 AAAGCGCGGA CCTATCGA TCGACAGCTC chr2L:1036955-1037075 50 6.17e-05 TGCACTGGGA CCTATCGA TATCGATAGA chr3L:15816868-15816988 39 6.17e-05 AATTCAATTG CCTATCGA CATTAAGCAG chr2R:9846473-9846593 34 8.70e-05 TTTCTTTGTA GCAATCGA GGTTTAATAG chrX:20426998-20427118 58 8.70e-05 CTGTTGCCGA gttatcgc tgtcgttatc chr3R:15346149-15346269 7 8.70e-05 CCTATC GTTATCGC TGCGTTATCG chr2R:22185920-22186040 97 8.70e-05 TCGGCTGTCG GCAATCGA TATCTCCTCT chrX:11092400-11092520 87 8.70e-05 GTATCGATAT GCAATCGA TGTTTCATTC chrX:4686900-4687020 63 8.70e-05 GGACGGGGTT GCAATCGA TGAATGTATT chrX:17865235-17865355 105 8.70e-05 TATCGTTGCA GTTATCGC TCTTATTG chr3R:5467701-5467821 79 8.70e-05 AACGAATGTG GTTATCGC CGACTCGCGC chrX:15486796-15486916 61 9.53e-05 GGTCGGTCTG CCTATCGC CAATCGATAG chr2L:20427555-20427675 29 9.53e-05 ACGTTGCACG CCTATCGC CGCCAAATAA chr3L:20491681-20491801 5 9.53e-05 CGAC CCTATCGC TATCTCACCC chrX:11621514-11621634 110 9.53e-05 ACATATACAG CCTATCGC CTT chrX:12018558-12018678 61 9.53e-05 GACTATCGAA CCTATCGC TGCGCGGCAT chr3R:16643620-16643740 69 1.16e-04 GATTGAAAGT GCAATCGC TGTTTGAGTG chr2R:22483228-22483348 62 1.16e-04 TTCAGTAAGT GCAATCGC CGACTGTCTA chr3R:5550611-5550731 55 1.16e-04 GCACGACGCC GTTATCGG TCAGAAAGGG chr3R:10413166-10413286 93 1.16e-04 CAGAGCTCGT GCAATCGC AACATCATAT chr2L:11120279-11120399 91 1.16e-04 TCAGCGATAT GTTATCGG ATTTTTAAAT chrX:13658279-13658399 88 1.16e-04 ATGAATCGCA GCAATCGC TCGATAAGTG chrX:5746469-5746589 33 1.16e-04 GTGCAGCCGC GTTATCGG CACGGTAATC chr3R:21878653-21878773 16 1.36e-04 CTTTTGCTCT CTTATCGA ATCAACAGCT chrX:18138414-18138534 44 1.36e-04 ATATCGATAC CTTATCGA TACTGTATCG chr2L:7223010-7223130 77 1.44e-04 TCTGTGCAAA CCTATCGG TTTCTATCGG chr3L:174656-174776 42 1.64e-04 TGTATCGATA GTAATCGA TAGCTCTTTT chrX:19616085-19616205 44 1.64e-04 CCAATGACTT GTAATCGA AAGCAACACC chr2L:13000589-13000709 41 1.64e-04 ATAGCTAAAT GTAATCGA TGAATTTCGA chr3L:17024210-17024330 38 1.64e-04 ATCTAAAACA GTAATCGA AAATATATCT chr3L:5897414-5897534 79 1.64e-04 GGCCTAGAAA GTAATCGA AAATTGGCGG chr2L:11282023-11282143 47 1.97e-04 GATAACTTTA CTTATCGC TTAATGAAGA chrX:23007607-23007727 60 1.97e-04 TACGATACTA CTTATCGC TAGGCCACAT chr2L:19580388-19580508 26 1.97e-04 CGATAGGCGG CCAATCGA GCGGGCTTTT chr3R:9258443-9258563 70 2.05e-04 TCGATAACAT GCCATCGA ATTCTATCGA chr3R:10407264-10407384 106 2.37e-04 TCGTAATTGA ACTATCGA TAGATAG chr2L:4452987-4453107 30 2.37e-04 CAAGGCAGAA ACTATCGA CAGTCGATAG chr3R:27929662-27929782 87 2.58e-04 CTGAGAAGGA CTTATCGG CCGTCGATTT chr3R:15834586-15834706 44 2.58e-04 TCGGTCGCGA CTTATCGG TCTTGTCGAT chr2R:24661386-24661506 72 2.58e-04 GCTTATAATT CTTATCGG TATCGATCAA chr2L:19063254-19063374 26 2.83e-04 TATTTGCCGG TCTATCGA TTTCCCTCAC chrX:13738036-13738156 92 2.83e-04 ATTGCAATCG TCTATCGA CGGCAGCATT chrX:6261013-6261133 99 2.83e-04 GATACTTGAT GCCATCGC TATTGCTGTA chr2R:10805233-10805353 57 2.83e-04 ATTCCTCGTC TCTATCGA GTGAATCGAT chrX:13606060-13606180 108 3.28e-04 AACGCCTCCT GATATCGA TACGC chrX:11993384-11993504 84 3.28e-04 tattgatata gatatcga tatcgatata chr3R:5633534-5633654 62 3.28e-04 TATCGATAGC GTAATCGG ATTGCAGCCC chr2L:19064854-19064974 83 3.28e-04 ATGCTTAATC GATATCGA GATATACAGA chr3L:8623867-8623987 56 3.47e-04 GGTTCGAGCT CTAATCGA TTATTCTCTG chrX:3788586-3788706 37 3.67e-04 TCGATGTGAT GTCATCGA TTGTCGATAA chr3R:21406866-21406986 72 4.16e-04 AGAATACTTT ATTATCGA CTACAATCGA chr3R:5670969-5671089 67 4.16e-04 TGCAGATCGA ATTATCGA ATATCGATAA chrX:15732076-15732196 10 4.16e-04 AAATTCGAT TCTATCGC AACGGGCAAC chrX:15746203-15746323 33 4.16e-04 TTTGCTAATC GCCATCGG TGGTCGCAGG chr2R:23972366-23972486 26 4.49e-04 AGATTCATCG ACTATCGG TTCGGTTGAT chr3R:12995575-12995695 37 5.52e-04 ATCACTACCA ACAATCGA TAAGAGGTAT chr2R:14618263-14618383 78 5.52e-04 AAGGTTGCAC ATTATCGC TATCAAAATC chr3R:6380284-6380404 4 5.70e-04 ACG GATATCGG CTGTCACTTT chrX:2172419-2172539 93 6.15e-04 ACGAGGCGTG GGTATCGA TTAACGATAC chrX:18884427-18884547 94 6.63e-04 GTTGCACTAG TCAATCGA TTGGCTGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTATCGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19033450-19033570 1.3e-05 51_[+4]_61 chrX:1692704-1692824 1.3e-05 91_[+4]_21 chr3L:17035557-17035677 1.3e-05 49_[+4]_63 chr2L:10419090-10419210 1.3e-05 82_[+4]_30 chrX:11615786-11615906 1.3e-05 93_[+4]_19 chr2R:10049395-10049515 1.3e-05 78_[+4]_34 chr2R:13039611-13039731 1.3e-05 90_[+4]_22 chr2R:10805436-10805556 1.3e-05 3_[+4]_109 chrX:5695195-5695315 2.1e-05 43_[+4]_69 chrX:12763604-12763724 2.1e-05 11_[+4]_101 chr2R:7712005-7712125 2.1e-05 38_[+4]_74 chr2L:5093865-5093985 4.1e-05 111_[+4]_1 chr2L:4382690-4382810 4.1e-05 68_[+4]_44 chr2R:24664337-24664457 4.1e-05 13_[+4]_99 chr2R:13206659-13206779 4.1e-05 103_[+4]_9 chr2R:9165603-9165723 4.1e-05 35_[+4]_77 chrX:19618491-19618611 4.1e-05 90_[+4]_22 chrX:7324149-7324269 4.1e-05 23_[+4]_89 chrX:10848638-10848758 4.9e-05 46_[+4]_66 chrX:2251803-2251923 4.9e-05 99_[+4]_13 chrX:19762327-19762447 6.2e-05 25_[+4]_87 chr2L:1036955-1037075 6.2e-05 49_[+4]_63 chr3L:15816868-15816988 6.2e-05 38_[+4]_74 chr2R:9846473-9846593 8.7e-05 33_[+4]_79 chrX:20426998-20427118 8.7e-05 57_[+4]_55 chr3R:15346149-15346269 8.7e-05 6_[+4]_106 chr2R:22185920-22186040 8.7e-05 96_[+4]_16 chrX:11092400-11092520 8.7e-05 86_[+4]_26 chrX:4686900-4687020 8.7e-05 62_[+4]_50 chrX:17865235-17865355 8.7e-05 104_[+4]_8 chr3R:5467701-5467821 8.7e-05 78_[+4]_34 chrX:15486796-15486916 9.5e-05 60_[+4]_52 chr2L:20427555-20427675 9.5e-05 28_[+4]_84 chr3L:20491681-20491801 9.5e-05 4_[+4]_108 chrX:11621514-11621634 9.5e-05 109_[+4]_3 chrX:12018558-12018678 9.5e-05 60_[+4]_52 chr3R:16643620-16643740 0.00012 68_[+4]_44 chr2R:22483228-22483348 0.00012 61_[+4]_51 chr3R:5550611-5550731 0.00012 54_[+4]_58 chr3R:10413166-10413286 0.00012 92_[+4]_20 chr2L:11120279-11120399 0.00012 90_[+4]_22 chrX:13658279-13658399 0.00012 87_[+4]_25 chrX:5746469-5746589 0.00012 32_[+4]_80 chr3R:21878653-21878773 0.00014 15_[+4]_97 chrX:18138414-18138534 0.00014 43_[+4]_69 chr2L:7223010-7223130 0.00014 76_[+4]_36 chr3L:174656-174776 0.00016 41_[+4]_71 chrX:19616085-19616205 0.00016 43_[+4]_69 chr2L:13000589-13000709 0.00016 40_[+4]_72 chr3L:17024210-17024330 0.00016 37_[+4]_75 chr3L:5897414-5897534 0.00016 78_[+4]_34 chr2L:11282023-11282143 0.0002 46_[+4]_66 chrX:23007607-23007727 0.0002 59_[+4]_53 chr2L:19580388-19580508 0.0002 25_[+4]_87 chr3R:9258443-9258563 0.00021 69_[+4]_43 chr3R:10407264-10407384 0.00024 105_[+4]_7 chr2L:4452987-4453107 0.00024 29_[+4]_83 chr3R:27929662-27929782 0.00026 86_[+4]_26 chr3R:15834586-15834706 0.00026 43_[+4]_69 chr2R:24661386-24661506 0.00026 71_[+4]_41 chr2L:19063254-19063374 0.00028 25_[+4]_87 chrX:13738036-13738156 0.00028 91_[+4]_21 chrX:6261013-6261133 0.00028 98_[+4]_14 chr2R:10805233-10805353 0.00028 56_[+4]_56 chrX:13606060-13606180 0.00033 107_[+4]_5 chrX:11993384-11993504 0.00033 83_[+4]_29 chr3R:5633534-5633654 0.00033 61_[+4]_51 chr2L:19064854-19064974 0.00033 82_[+4]_30 chr3L:8623867-8623987 0.00035 55_[+4]_57 chrX:3788586-3788706 0.00037 36_[+4]_76 chr3R:21406866-21406986 0.00042 71_[+4]_41 chr3R:5670969-5671089 0.00042 66_[+4]_46 chrX:15732076-15732196 0.00042 9_[+4]_103 chrX:15746203-15746323 0.00042 32_[+4]_80 chr2R:23972366-23972486 0.00045 25_[+4]_87 chr3R:12995575-12995695 0.00055 36_[+4]_76 chr2R:14618263-14618383 0.00055 77_[+4]_35 chr3R:6380284-6380404 0.00057 3_[+4]_109 chrX:2172419-2172539 0.00061 92_[+4]_20 chrX:18884427-18884547 0.00066 93_[+4]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTATCGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYTATCGA width=8 seqs=80 chr2L:19033450-19033570 ( 52) GCTATCGA 1 chrX:1692704-1692824 ( 92) GCTATCGA 1 chr3L:17035557-17035677 ( 50) GCTATCGA 1 chr2L:10419090-10419210 ( 83) GCTATCGA 1 chrX:11615786-11615906 ( 94) GCTATCGA 1 chr2R:10049395-10049515 ( 79) GCTATCGA 1 chr2R:13039611-13039731 ( 91) GCTATCGA 1 chr2R:10805436-10805556 ( 4) GCTATCGA 1 chrX:5695195-5695315 ( 44) GCTATCGC 1 chrX:12763604-12763724 ( 12) GCTATCGC 1 chr2R:7712005-7712125 ( 39) GCTATCGC 1 chr2L:5093865-5093985 ( 112) GTTATCGA 1 chr2L:4382690-4382810 ( 69) GTTATCGA 1 chr2R:24664337-24664457 ( 14) GTTATCGA 1 chr2R:13206659-13206779 ( 104) GTTATCGA 1 chr2R:9165603-9165723 ( 36) GTTATCGA 1 chrX:19618491-19618611 ( 91) GTTATCGA 1 chrX:7324149-7324269 ( 24) GTTATCGA 1 chrX:10848638-10848758 ( 47) GCTATCGG 1 chrX:2251803-2251923 ( 100) GCTATCGG 1 chrX:19762327-19762447 ( 26) CCTATCGA 1 chr2L:1036955-1037075 ( 50) CCTATCGA 1 chr3L:15816868-15816988 ( 39) CCTATCGA 1 chr2R:9846473-9846593 ( 34) GCAATCGA 1 chrX:20426998-20427118 ( 58) GTTATCGC 1 chr3R:15346149-15346269 ( 7) GTTATCGC 1 chr2R:22185920-22186040 ( 97) GCAATCGA 1 chrX:11092400-11092520 ( 87) GCAATCGA 1 chrX:4686900-4687020 ( 63) GCAATCGA 1 chrX:17865235-17865355 ( 105) GTTATCGC 1 chr3R:5467701-5467821 ( 79) GTTATCGC 1 chrX:15486796-15486916 ( 61) CCTATCGC 1 chr2L:20427555-20427675 ( 29) CCTATCGC 1 chr3L:20491681-20491801 ( 5) CCTATCGC 1 chrX:11621514-11621634 ( 110) CCTATCGC 1 chrX:12018558-12018678 ( 61) CCTATCGC 1 chr3R:16643620-16643740 ( 69) GCAATCGC 1 chr2R:22483228-22483348 ( 62) GCAATCGC 1 chr3R:5550611-5550731 ( 55) GTTATCGG 1 chr3R:10413166-10413286 ( 93) GCAATCGC 1 chr2L:11120279-11120399 ( 91) GTTATCGG 1 chrX:13658279-13658399 ( 88) GCAATCGC 1 chrX:5746469-5746589 ( 33) GTTATCGG 1 chr3R:21878653-21878773 ( 16) CTTATCGA 1 chrX:18138414-18138534 ( 44) CTTATCGA 1 chr2L:7223010-7223130 ( 77) CCTATCGG 1 chr3L:174656-174776 ( 42) GTAATCGA 1 chrX:19616085-19616205 ( 44) GTAATCGA 1 chr2L:13000589-13000709 ( 41) GTAATCGA 1 chr3L:17024210-17024330 ( 38) GTAATCGA 1 chr3L:5897414-5897534 ( 79) GTAATCGA 1 chr2L:11282023-11282143 ( 47) CTTATCGC 1 chrX:23007607-23007727 ( 60) CTTATCGC 1 chr2L:19580388-19580508 ( 26) CCAATCGA 1 chr3R:9258443-9258563 ( 70) GCCATCGA 1 chr3R:10407264-10407384 ( 106) ACTATCGA 1 chr2L:4452987-4453107 ( 30) ACTATCGA 1 chr3R:27929662-27929782 ( 87) CTTATCGG 1 chr3R:15834586-15834706 ( 44) CTTATCGG 1 chr2R:24661386-24661506 ( 72) CTTATCGG 1 chr2L:19063254-19063374 ( 26) TCTATCGA 1 chrX:13738036-13738156 ( 92) TCTATCGA 1 chrX:6261013-6261133 ( 99) GCCATCGC 1 chr2R:10805233-10805353 ( 57) TCTATCGA 1 chrX:13606060-13606180 ( 108) GATATCGA 1 chrX:11993384-11993504 ( 84) GATATCGA 1 chr3R:5633534-5633654 ( 62) GTAATCGG 1 chr2L:19064854-19064974 ( 83) GATATCGA 1 chr3L:8623867-8623987 ( 56) CTAATCGA 1 chrX:3788586-3788706 ( 37) GTCATCGA 1 chr3R:21406866-21406986 ( 72) ATTATCGA 1 chr3R:5670969-5671089 ( 67) ATTATCGA 1 chrX:15732076-15732196 ( 10) TCTATCGC 1 chrX:15746203-15746323 ( 33) GCCATCGG 1 chr2R:23972366-23972486 ( 26) ACTATCGG 1 chr3R:12995575-12995695 ( 37) ACAATCGA 1 chr2R:14618263-14618383 ( 78) ATTATCGC 1 chr3R:6380284-6380404 ( 4) GATATCGG 1 chrX:2172419-2172539 ( 93) GGTATCGA 1 chrX:18884427-18884547 ( 94) TCAATCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTATCGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.40533 E= 1.6e-013 -177 20 166 -230 -258 146 -398 38 -41 -197 -1297 123 174 -1297 -1297 -1297 -1297 -1297 -1297 170 -1297 235 -1297 -1297 -1297 -1297 234 -1297 94 42 -28 -1297 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTATCGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 1.6e-013 0.087500 0.225000 0.625000 0.062500 0.050000 0.537500 0.012500 0.400000 0.225000 0.050000 0.000000 0.725000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.575000 0.262500 0.162500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYTATCGA MEME-4 regular expression -------------------------------------------------------------------------------- [GC][CT][TA]ATCG[AC] -------------------------------------------------------------------------------- Time 24.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGCGSS MEME-5 width = 8 sites = 24 llr = 233 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGCGSS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C :::1a:73 probability G :2a9:a35 matrix T a8:::::: bits 2.4 * ** 2.1 * ** 1.9 **** 1.6 * **** Relative 1.4 * ***** Entropy 1.2 ******* (14.0 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGGCGCG consensus G GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGSS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3334951-3335071 103 5.49e-06 CGCTAAGAGG TTGGCGCG AATTTTCAAA chrX:2636874-2636994 47 5.49e-06 AATAAGCTTT TTGGCGCG AAGGAGGCGA chr3L:7094232-7094352 72 5.49e-06 GTTGATGAGT TTGGCGCG CCGTTTAAAA chr2L:10743924-10744044 75 5.49e-06 TTTCAGTTAC TTGGCGCG TTTTTTTAAA chrX:15866925-15867045 27 5.49e-06 CATTTTAATG TTGGCGCG CTTATTTGAA chr2R:13206659-13206779 5 1.09e-05 CGTT TTGGCGCC AAATGTTGCT chr3L:12732885-12733005 29 1.09e-05 AGATTTAAAA TTGGCGCC TTACTTTTAG chr2R:9094561-9094681 14 1.09e-05 CAAAAAAAGC TTGGCGCC GCGTCAGTCT chrX:20656104-20656224 20 1.09e-05 GCTTTTTGAT TTGGCGCC CACTTTGCAC chr2R:8939813-8939933 103 1.65e-05 TAGCATGCAA TTGGCGGG AATTTTAAAA chr3R:14901547-14901667 98 1.65e-05 GGGCCTTTTT TTGGCGGG GGTTCAAATT chr2L:2969622-2969742 8 1.65e-05 TCGAAAA TTGGCGGG AATTAGTTAT chr2L:20735453-20735573 41 1.65e-05 TTTTCTTCGA TTGGCGGG AGGGACGCGC chr3R:29993357-29993477 91 1.65e-05 CAGTAATCTT TTGGCGGG ATGATTTAAA chr2L:9893373-9893493 98 2.00e-05 GGATGACAAT TGGGCGCG CAATTTTGAA chrX:18138414-18138534 86 2.90e-05 GCACTGGCAA TGGGCGCC TTATTCGATT chr2R:10557169-10557289 3 2.90e-05 AG TGGGCGCC AACATATCGA chr2R:7709498-7709618 90 2.90e-05 GAAACCATGT TGGGCGCC AATATTCGAA chr2R:5143666-5143786 4 3.73e-05 ttt ttggcgca ctttcaaagt chr3L:5897414-5897534 90 5.27e-05 TAATCGAAAA TTGGCGGA AAAAAGTGGA chr2L:9612998-9613118 6 5.27e-05 TATAA TTGGCGGA AACATTTAAA chr2R:13159957-13160077 25 5.82e-05 TCGGCCGCCT TTGCCGCG CATTTAGCAA chrX:15746203-15746323 2 6.35e-05 T TGGGCGCA CGGTTGCATT chrX:3936405-3936525 1 8.87e-05 . TTGCCGGC CGTTAGGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGSS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3334951-3335071 5.5e-06 102_[+5]_10 chrX:2636874-2636994 5.5e-06 46_[+5]_66 chr3L:7094232-7094352 5.5e-06 71_[+5]_41 chr2L:10743924-10744044 5.5e-06 74_[+5]_38 chrX:15866925-15867045 5.5e-06 26_[+5]_86 chr2R:13206659-13206779 1.1e-05 4_[+5]_108 chr3L:12732885-12733005 1.1e-05 28_[+5]_84 chr2R:9094561-9094681 1.1e-05 13_[+5]_99 chrX:20656104-20656224 1.1e-05 19_[+5]_93 chr2R:8939813-8939933 1.6e-05 102_[+5]_10 chr3R:14901547-14901667 1.6e-05 97_[+5]_15 chr2L:2969622-2969742 1.6e-05 7_[+5]_105 chr2L:20735453-20735573 1.6e-05 40_[+5]_72 chr3R:29993357-29993477 1.6e-05 90_[+5]_22 chr2L:9893373-9893493 2e-05 97_[+5]_15 chrX:18138414-18138534 2.9e-05 85_[+5]_27 chr2R:10557169-10557289 2.9e-05 2_[+5]_110 chr2R:7709498-7709618 2.9e-05 89_[+5]_23 chr2R:5143666-5143786 3.7e-05 3_[+5]_109 chr3L:5897414-5897534 5.3e-05 89_[+5]_23 chr2L:9612998-9613118 5.3e-05 5_[+5]_107 chr2R:13159957-13160077 5.8e-05 24_[+5]_88 chrX:15746203-15746323 6.3e-05 1_[+5]_111 chrX:3936405-3936525 8.9e-05 [+5]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGSS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGCGSS width=8 seqs=24 chr3L:3334951-3335071 ( 103) TTGGCGCG 1 chrX:2636874-2636994 ( 47) TTGGCGCG 1 chr3L:7094232-7094352 ( 72) TTGGCGCG 1 chr2L:10743924-10744044 ( 75) TTGGCGCG 1 chrX:15866925-15867045 ( 27) TTGGCGCG 1 chr2R:13206659-13206779 ( 5) TTGGCGCC 1 chr3L:12732885-12733005 ( 29) TTGGCGCC 1 chr2R:9094561-9094681 ( 14) TTGGCGCC 1 chrX:20656104-20656224 ( 20) TTGGCGCC 1 chr2R:8939813-8939933 ( 103) TTGGCGGG 1 chr3R:14901547-14901667 ( 98) TTGGCGGG 1 chr2L:2969622-2969742 ( 8) TTGGCGGG 1 chr2L:20735453-20735573 ( 41) TTGGCGGG 1 chr3R:29993357-29993477 ( 91) TTGGCGGG 1 chr2L:9893373-9893493 ( 98) TGGGCGCG 1 chrX:18138414-18138534 ( 86) TGGGCGCC 1 chr2R:10557169-10557289 ( 3) TGGGCGCC 1 chr2R:7709498-7709618 ( 90) TGGGCGCC 1 chr2R:5143666-5143786 ( 4) TTGGCGCA 1 chr3L:5897414-5897534 ( 90) TTGGCGGA 1 chr2L:9612998-9613118 ( 6) TTGGCGGA 1 chr2R:13159957-13160077 ( 25) TTGCCGCG 1 chrX:15746203-15746323 ( 2) TGGGCGCA 1 chrX:3936405-3936525 ( 1) TTGCCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGSS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 1.2e-003 -1123 -1123 -1123 170 -1123 -1123 8 136 -1123 -1123 234 -1123 -1123 -123 222 -1123 -1123 235 -1123 -1123 -1123 -1123 234 -1123 -1123 177 76 -1123 -84 77 134 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGSS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.2e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.208333 0.791667 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.166667 0.333333 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCGSS MEME-5 regular expression -------------------------------------------------------------------------------- T[TG]GGCG[CG][GC] -------------------------------------------------------------------------------- Time 30.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:913821-913941 4.29e-03 120 chr2R:7709498-7709618 2.45e-03 89_[+5(2.90e-05)]_23 chrX:7986678-7986798 1.40e-01 120 chr3R:12548359-12548479 8.92e-01 120 chrX:12018558-12018678 4.66e-04 23_[+2(9.11e-05)]_29_[+4(9.53e-05)]_\ 52 chrX:7324149-7324269 5.13e-05 23_[+4(4.08e-05)]_9_[+4(4.08e-05)]_\ 10_[+3(3.30e-05)]_54 chr2R:10805233-10805353 4.42e-04 11_[+3(3.30e-05)]_48_[+1(5.94e-05)]_\ 45 chrX:12467329-12467449 2.53e-02 120 chr2R:21168227-21168347 1.64e-03 44_[+2(7.84e-05)]_68 chr2R:11360643-11360763 1.12e-03 94_[+3(2.49e-05)]_18 chr2L:9540376-9540496 6.44e-01 120 chr3R:16651104-16651224 7.22e-03 62_[+1(3.02e-05)]_50 chrX:20162711-20162831 7.28e-02 120 chr3R:29993357-29993477 8.67e-03 90_[+5(1.65e-05)]_22 chrX:21395593-21395713 1.65e-02 120 chr2L:10396602-10396722 2.99e-02 110_[+1(3.02e-05)]_2 chrX:15867128-15867248 4.12e-01 120 chrX:15866925-15867045 2.87e-04 26_[+5(5.49e-06)]_52_[+1(5.94e-05)]_\ 26 chr2L:455431-455551 9.54e-05 13_[+3(4.93e-05)]_99 chr2R:7940670-7940790 5.56e-01 120 chr2R:17670003-17670123 1.43e-01 120 chr3R:5467701-5467821 6.47e-03 58_[+4(4.08e-05)]_12_[+4(8.70e-05)]_\ 34 chr2R:22874611-22874731 5.39e-02 65_[+2(7.84e-05)]_26_[+2(1.59e-05)]_\ 13 chr3L:23015852-23015972 6.30e-04 71_[+2(7.84e-05)]_7_[+1(3.02e-05)]_\ 26 chrX:15860035-15860155 1.54e-04 31_[+4(1.26e-05)]_81 chr2R:2856822-2856942 3.57e-02 82_[+1(3.02e-05)]_30 chr2L:8123932-8124052 1.68e-02 54_[+3(8.44e-05)]_58 chrX:20656104-20656224 7.21e-08 19_[+5(1.09e-05)]_31_[+1(3.02e-05)]_\ 34_[+3(1.26e-05)]_12 chr2R:7712005-7712125 4.17e-05 38_[+4(2.09e-05)]_17_[+1(3.02e-05)]_\ 49 chrX:15345089-15345209 1.22e-04 70_[+2(4.04e-05)]_10_[+1(5.94e-05)]_\ 24 chr3L:15816868-15816988 1.68e-04 38_[+4(6.17e-05)]_20_[+1(3.02e-05)]_\ 11_[+1(3.02e-05)]_1_[+1(9.05e-05)]_18 chr2R:4268940-4269060 6.13e-01 120 chr3L:14408835-14408955 2.44e-02 45_[+1(5.94e-05)]_67 chr3L:13040998-13041118 3.75e-02 55_[+2(1.59e-05)]_57 chr2R:23693890-23694010 1.10e-05 42_[+4(4.08e-05)]_1_[+3(1.26e-05)]_\ 41_[+3(2.49e-05)]_12 chr2R:10805436-10805556 1.22e-03 3_[+4(1.26e-05)]_78_[+1(3.02e-05)]_\ 23 chr3R:20551455-20551575 8.73e-01 120 chr3L:8623867-8623987 3.06e-03 77_[+1(9.05e-05)]_35 chr2L:1036955-1037075 6.18e-06 6_[+2(5.30e-06)]_37_[+1(3.02e-05)]_\ 61 chrX:19618491-19618611 1.22e-03 22_[+3(2.49e-05)]_60_[+4(4.08e-05)]_\ 22 chrX:6261013-6261133 8.26e-03 84_[+1(3.02e-05)]_28 chrX:5746469-5746589 1.83e-03 50_[+4(8.70e-05)]_62 chr2R:12923787-12923907 2.31e-04 25_[+1(3.02e-05)]_87 chrX:2251803-2251923 2.82e-03 51_[+1(9.05e-05)]_33_[+4(4.91e-05)]_\ 20 chr2L:9893373-9893493 5.98e-07 55_[+1(3.02e-05)]_34_[+5(2.00e-05)]_\ 15 chr2L:9612998-9613118 7.65e-02 5_[+5(5.27e-05)]_107 chr3L:17846746-17846866 6.88e-01 120 chr2L:1419790-1419910 1.23e-01 57_[+2(7.84e-05)]_55 chr3R:23902695-23902815 1.13e-02 74_[+2(5.40e-05)]_38 chr3R:5127328-5127448 5.48e-01 120 chr2L:20735453-20735573 2.16e-03 40_[+5(1.65e-05)]_23_[+2(5.40e-05)]_\ 41 chr2L:2969622-2969742 1.39e-03 7_[+5(1.65e-05)]_105 chr2L:4452987-4453107 5.74e-03 90_[+1(3.02e-05)]_22 chr3L:13999330-13999450 8.79e-03 105_[+1(3.02e-05)]_7 chrX:3936405-3936525 1.38e-04 [+5(8.87e-05)]_43_[+1(3.02e-05)]_61 chr3R:7155089-7155209 2.02e-01 120 chr3R:16652299-16652419 5.89e-05 14_[+3(1.26e-05)]_56_[+1(3.02e-05)]_\ 34 chr2R:13159957-13160077 5.97e-03 24_[+5(5.82e-05)]_7_[+2(7.84e-05)]_\ 73 chr2R:9165603-9165723 2.79e-03 35_[+4(4.08e-05)]_41_[+1(3.02e-05)]_\ 28 chr3L:13031475-13031595 9.55e-03 120 chr2L:294635-294755 4.58e-04 66_[+1(3.02e-05)]_46 chr2R:10557169-10557289 1.45e-05 2_[+5(2.90e-05)]_4_[+1(3.02e-05)]_\ 98 chrX:9639264-9639384 4.26e-02 120 chr2L:19530260-19530380 1.49e-02 25_[+3(2.49e-05)]_87 chr2R:23543971-23544091 1.56e-04 4_[+1(5.94e-05)]_9_[+1(3.02e-05)]_\ 18_[+2(7.84e-05)]_65 chr2R:13039611-13039731 2.20e-04 90_[+4(1.26e-05)]_[+1(5.94e-05)]_14 chr3R:6456489-6456609 3.99e-01 120 chr2L:19064854-19064974 7.12e-04 13_[+1(3.02e-05)]_57_[+1(5.94e-05)]_\ 34 chrX:17865235-17865355 8.44e-03 104_[+4(8.70e-05)]_8 chrX:16553928-16554048 1.60e-02 120 chrX:18138414-18138534 9.12e-06 34_[+1(3.02e-05)]_3_[+1(3.02e-05)]_\ 32_[+5(2.90e-05)]_27 chrX:784660-784780 1.07e-04 19_[+1(3.02e-05)]_72_[+2(9.91e-05)]_\ 13 chrX:13738036-13738156 3.45e-03 52_[+2(3.23e-05)]_60 chrX:11621514-11621634 2.72e-02 109_[+4(9.53e-05)]_3 chrX:15701184-15701304 2.71e-05 29_[+2(1.06e-05)]_9_[+3(6.27e-05)]_\ 66 chr3R:14901547-14901667 8.41e-03 44_[+5(8.33e-05)]_45_[+5(1.65e-05)]_\ 15 chrX:6688924-6689044 8.68e-01 120 chr2L:13382464-13382584 1.00e+00 120 chr3L:20491681-20491801 1.50e-03 4_[+4(9.53e-05)]_108 chr2R:7021772-7021892 5.39e-02 120 chr2R:10112213-10112333 1.36e-01 69_[+1(9.05e-05)]_43 chrX:15746203-15746323 4.57e-03 1_[+5(6.35e-05)]_111 chrX:6689124-6689244 1.59e-04 70_[+4(1.26e-05)]_42 chrX:2012072-2012192 3.89e-02 74_[+2(5.40e-05)]_38 chrX:13090765-13090885 1.16e-02 120 chr2R:8939813-8939933 3.41e-04 86_[+1(3.02e-05)]_8_[+5(1.65e-05)]_\ 10 chr2R:18705903-18706023 6.57e-02 [+1(9.05e-05)]_112 chr2R:17048747-17048867 1.60e-01 120 chr2L:10743924-10744044 3.83e-06 39_[+1(3.02e-05)]_27_[+5(5.49e-06)]_\ 38 chr3L:7094232-7094352 3.87e-05 40_[+1(3.02e-05)]_23_[+5(5.49e-06)]_\ 41 chrX:13658279-13658399 6.90e-04 47_[+2(3.23e-05)]_65 chr3L:710334-710454 1.42e-03 44_[+1(3.02e-05)]_68 chr2R:10049395-10049515 1.06e-04 63_[+2(4.04e-05)]_7_[+4(1.26e-05)]_\ 34 chr4:855234-855354 2.58e-02 57_[+2(7.84e-05)]_55 chrX:16313565-16313685 2.68e-01 120 chr2R:7380873-7380993 1.05e-01 120 chr3R:14663141-14663261 7.34e-02 77_[+1(5.94e-05)]_35 chrX:625308-625428 3.08e-01 120 chr2R:14618263-14618383 4.24e-04 120 chr2R:9094561-9094681 2.88e-04 13_[+5(1.09e-05)]_62_[+4(8.70e-05)]_\ 29 chrX:5873323-5873443 5.95e-03 17_[+1(3.02e-05)]_95 chr3L:5897414-5897534 5.72e-05 14_[+1(3.02e-05)]_67_[+5(5.27e-05)]_\ 23 chr3L:12732885-12733005 3.21e-03 28_[+5(1.09e-05)]_84 chr2L:21677649-21677769 7.59e-01 120 chrX:12763604-12763724 1.30e-03 11_[+4(2.09e-05)]_20_[+1(3.02e-05)]_\ 55_[+1(3.02e-05)]_10 chr3L:18841390-18841510 2.75e-01 120 chrX:4702966-4703086 4.38e-02 57_[+2(5.40e-05)]_55 chr2L:8400317-8400437 5.27e-03 51_[+1(9.05e-05)]_61 chrX:4686900-4687020 3.75e-03 37_[+1(5.94e-05)]_17_[+4(8.70e-05)]_\ 50 chr3R:4359410-4359530 1.11e-04 38_[+2(7.84e-05)]_13_[+4(1.26e-05)]_\ 53 chr2R:13206659-13206779 2.68e-08 4_[+5(1.09e-05)]_16_[+1(3.02e-05)]_\ 8_[+2(5.40e-05)]_15_[+3(7.10e-05)]_28_[+4(4.08e-05)]_[+5(2.55e-05)]_1 chr2L:10251706-10251826 1.95e-01 82_[+1(9.05e-05)]_30 chr3R:9258645-9258765 3.13e-01 120 chrX:11615786-11615906 2.53e-03 51_[+4(4.08e-05)]_7_[+1(5.94e-05)]_\ 19_[+4(1.26e-05)]_19 chrX:16787008-16787128 1.09e-05 19_[+2(1.06e-05)]_54_[+4(4.08e-05)]_\ 31 chrX:6090211-6090331 1.12e-03 61_[+1(3.02e-05)]_51 chr2L:20427555-20427675 3.74e-03 28_[+4(9.53e-05)]_8_[+1(5.94e-05)]_\ 68 chrX:11092400-11092520 3.30e-03 77_[+1(3.02e-05)]_1_[+4(8.70e-05)]_\ 26 chrX:5876774-5876894 1.08e-03 55_[+2(7.84e-05)]_41_[+4(4.08e-05)]_\ 8 chrX:16593529-16593649 9.99e-01 120 chr3R:12219631-12219751 4.94e-03 21_[+3(3.30e-05)]_91 chr3R:9258443-9258563 9.34e-04 57_[+1(3.02e-05)]_55 chr2L:19580388-19580508 3.45e-03 85_[+5(9.22e-05)]_27 chrX:10848638-10848758 2.01e-04 46_[+4(4.91e-05)]_12_[+1(3.02e-05)]_\ 46 chr3L:7975021-7975141 9.98e-01 120 chr3L:13027482-13027602 4.74e-02 50_[+1(5.94e-05)]_62 chr3R:5633534-5633654 6.81e-04 51_[+1(3.02e-05)]_61 chr3R:7135958-7136078 9.02e-02 66_[+2(7.84e-05)]_46 chr2R:22185920-22186040 5.97e-03 57_[+1(5.94e-05)]_33_[+1(5.94e-05)]_\ 14 chrX:3788586-3788706 8.79e-02 120 chrX:16361436-16361556 2.82e-01 120 chr3L:13949808-13949928 1.28e-01 66_[+2(5.40e-05)]_46 chr3R:21878653-21878773 1.62e-04 26_[+3(2.49e-05)]_6_[+1(5.94e-05)]_\ 72 chr3L:17024210-17024330 2.25e-02 85_[+1(5.94e-05)]_27 chr3R:21886944-21887064 2.17e-01 120 chr2R:24664337-24664457 4.44e-07 13_[+4(4.08e-05)]_22_[+1(3.02e-05)]_\ 28_[+2(1.59e-05)]_7_[+3(1.26e-05)]_18 chr3R:13699487-13699607 8.15e-02 51_[+3(7.10e-05)]_61 chr3L:15548244-15548364 3.14e-02 23_[+1(9.05e-05)]_89 chr2R:24603569-24603689 1.97e-01 120 chrX:6533888-6534008 4.32e-02 38_[+2(7.84e-05)]_74 chr3L:1295010-1295130 1.45e-03 19_[+1(3.02e-05)]_93 chr3R:24230101-24230221 7.64e-01 120 chr2L:11120279-11120399 1.30e-06 10_[+2(9.11e-05)]_6_[+3(4.11e-05)]_\ 10_[+4(1.26e-05)]_70 chrX:11993384-11993504 4.14e-03 85_[+1(3.02e-05)]_27 chr2L:8305483-8305603 2.65e-02 50_[+1(5.94e-05)]_62 chrX:2636874-2636994 2.01e-06 46_[+5(5.49e-06)]_10_[+2(1.06e-05)]_\ 48 chrX:15732076-15732196 4.61e-03 66_[+1(9.05e-05)]_17_[+3(8.44e-05)]_\ 21 chr3L:6955633-6955753 9.61e-01 120 chrX:22482291-22482411 6.08e-05 69_[+1(3.02e-05)]_8_[+2(1.06e-05)]_\ 27 chr2R:17056794-17056914 3.54e-02 87_[+1(5.94e-05)]_25 chr3L:14942906-14943026 3.14e-04 26_[+4(6.17e-05)]_86 chr2L:4886329-4886449 5.57e-04 29_[+2(2.42e-05)]_83 chr3L:16566916-16567036 2.23e-01 120 chr2L:1006627-1006747 3.19e-01 120 chr3R:19642728-19642848 4.27e-04 37_[+1(3.02e-05)]_75 chrX:7968664-7968784 4.72e-01 120 chr3L:16051430-16051550 8.16e-01 120 chr2R:24661386-24661506 8.22e-03 45_[+1(5.94e-05)]_67 chr2L:454743-454863 2.27e-05 12_[+1(5.94e-05)]_22_[+3(4.93e-05)]_\ 70 chr3R:10413166-10413286 5.02e-02 120 chr2R:17865926-17866046 1.22e-01 120 chrX:9273135-9273255 4.66e-01 120 chr2L:4382690-4382810 1.32e-04 47_[+2(7.84e-05)]_13_[+4(4.08e-05)]_\ 5_[+1(3.02e-05)]_31 chrX:23007607-23007727 7.58e-04 7_[+1(5.94e-05)]_105 chrX:5695195-5695315 5.57e-06 6_[+1(3.02e-05)]_17_[+3(4.11e-05)]_\ 4_[+4(2.09e-05)]_27_[+1(3.02e-05)]_34 chr3L:16139246-16139366 2.01e-03 86_[+1(3.02e-05)]_26 chr3R:30806971-30807091 6.46e-01 120 chr2L:1147725-1147845 2.05e-03 65_[+1(3.02e-05)]_47 chr2L:17590046-17590166 1.32e-03 39_[+3(2.49e-05)]_40_[+2(7.84e-05)]_\ 25 chr2L:13000589-13000709 1.14e-02 91_[+1(5.94e-05)]_21 chrX:18884427-18884547 8.85e-03 120 chrX:15785544-15785664 8.75e-07 14_[+2(1.06e-05)]_30_[+3(5.74e-05)]_\ 17_[+4(4.08e-05)]_35 chr2L:10419090-10419210 4.70e-03 9_[+1(5.94e-05)]_65_[+4(1.26e-05)]_\ 30 chr2R:18972520-18972640 9.22e-01 120 chrX:19616085-19616205 3.05e-04 97_[+4(1.26e-05)]_15 chr2R:23972366-23972486 3.15e-03 53_[+1(3.02e-05)]_59 chr3L:17035557-17035677 1.08e-06 49_[+4(1.26e-05)]_15_[+1(3.02e-05)]_\ 22_[+3(1.26e-05)]_10 chr3R:22375720-22375840 7.36e-01 120 chrX:13606060-13606180 3.08e-02 55_[+1(3.02e-05)]_46_[+1(3.02e-05)]_\ 3 chr3L:174656-174776 2.21e-02 33_[+1(3.02e-05)]_2_[+1(5.94e-05)]_\ 69 chr3R:22381224-22381344 2.08e-02 74_[+1(3.02e-05)]_38 chr2L:19498104-19498224 1.04e-04 [+3(4.11e-05)]_4_[+3(8.44e-05)]_100 chrX:19762327-19762447 2.64e-04 25_[+4(6.17e-05)]_17_[+2(1.59e-05)]_\ 62 chr2R:15676700-15676820 7.93e-04 85_[+1(3.02e-05)]_27 chrX:15486796-15486916 1.98e-05 60_[+4(9.53e-05)]_1_[+1(5.94e-05)]_\ 28_[+3(1.26e-05)]_7 chr2L:5093865-5093985 8.13e-03 111_[+4(4.08e-05)]_1 chr3L:18865582-18865702 2.74e-01 120 chrX:1692704-1692824 2.79e-04 54_[+4(8.70e-05)]_29_[+4(1.26e-05)]_\ 21 chr3R:6380284-6380404 1.18e-01 120 chrX:2172419-2172539 5.88e-04 35_[+1(3.02e-05)]_51_[+1(9.05e-05)]_\ 18 chr3R:5670969-5671089 5.75e-04 75_[+1(3.02e-05)]_11_[+3(1.26e-05)]_\ 18 chr3R:13013122-13013242 2.20e-01 120 chrX:16321149-16321269 3.27e-02 120 chrX:1664951-1665071 3.53e-04 85_[+4(1.26e-05)]_27 chrX:6687424-6687544 2.68e-05 25_[+2(1.06e-05)]_16_[+1(3.02e-05)]_\ 63 chr2L:19041722-19041842 1.79e-02 111_[+1(5.94e-05)]_1 chr2R:6746290-6746410 5.98e-04 52_[+1(5.94e-05)]_19_[+3(4.11e-05)]_\ 33 chrX:11351080-11351200 3.14e-02 120 chr3R:21406866-21406986 2.67e-02 46_[+1(3.02e-05)]_66 chr3R:15834586-15834706 4.57e-03 120 chrX:18893634-18893754 4.65e-04 39_[+1(3.02e-05)]_73 chr3R:27929662-27929782 7.80e-04 55_[+1(5.94e-05)]_57 chr3R:11626699-11626819 9.92e-01 120 chr3L:3334951-3335071 3.39e-04 102_[+5(5.49e-06)]_10 chr2R:16240702-16240822 1.81e-01 120 chr3L:8634062-8634182 2.78e-07 23_[+3(2.49e-05)]_35_[+2(4.04e-05)]_\ 14_[+4(6.17e-05)]_24 chr2L:11282023-11282143 1.51e-02 63_[+1(5.94e-05)]_3_[+1(5.94e-05)]_\ 38 chr2R:21687614-21687734 1.64e-06 31_[+2(5.30e-06)]_14_[+1(3.02e-05)]_\ 59 chr3R:15346149-15346269 2.19e-03 6_[+4(8.70e-05)]_5_[+1(3.02e-05)]_\ 93 chr2R:23851273-23851393 8.62e-01 120 chr4:834976-835096 1.94e-03 34_[+2(1.59e-05)]_78 chr2L:19123789-19123909 3.32e-04 58_[+1(3.02e-05)]_54 chr2R:4261622-4261742 6.19e-01 120 chrX:8240581-8240701 1.02e-01 120 chrX:20426998-20427118 5.01e-05 42_[+3(1.26e-05)]_7_[+4(8.70e-05)]_\ 4_[+4(8.70e-05)]_43 chr2L:7223010-7223130 7.64e-04 43_[+4(1.26e-05)]_69 chrX:16303806-16303926 6.21e-03 70_[+1(3.02e-05)]_42 chr3R:15268567-15268687 5.87e-02 86_[+3(3.30e-05)]_26 chr2L:19033450-19033570 1.15e-04 4_[+3(4.93e-05)]_39_[+4(1.26e-05)]_\ 23_[+1(3.02e-05)]_30 chr2R:15954954-15955074 6.17e-04 70_[+1(3.02e-05)]_6_[+3(3.30e-05)]_\ 28 chrX:11868967-11869087 9.45e-01 120 chr3L:13412675-13412795 2.66e-01 120 chr2L:2045374-2045494 1.23e-04 59_[+3(5.74e-05)]_36_[+2(2.42e-05)]_\ 9 chr3R:24719531-24719651 1.66e-04 89_[+1(3.02e-05)]_9_[+2(5.40e-05)]_\ 6 chr2R:18972727-18972847 3.16e-01 120 chr3R:5550611-5550731 4.21e-02 120 chr3R:7530351-7530471 2.98e-01 120 chr3L:1940956-1941076 7.49e-03 97_[+1(9.05e-05)]_15 chr2R:5143666-5143786 3.21e-03 3_[+5(3.73e-05)]_8_[+3(7.10e-05)]_\ 93 chr3L:8956726-8956846 1.14e-04 73_[+2(1.59e-05)]_6_[+1(3.02e-05)]_\ 25 chr2L:11130328-11130448 7.08e-03 120 chr2L:12174891-12175011 3.01e-03 64_[+1(3.02e-05)]_48 chr2L:22121003-22121123 1.20e-01 120 chr3L:7510528-7510648 5.14e-01 120 chr3R:10407264-10407384 1.10e-03 71_[+1(3.02e-05)]_28_[+1(3.02e-05)]_\ 5 chrX:7931372-7931492 1.34e-02 59_[+1(3.02e-05)]_53 chr3L:710544-710664 6.15e-01 120 chr3R:12995575-12995695 8.35e-04 38_[+1(5.94e-05)]_5_[+1(3.02e-05)]_\ 61 chrX:11090229-11090349 1.23e-02 75_[+1(3.02e-05)]_37 chr2R:22483228-22483348 8.96e-03 23_[+1(3.02e-05)]_46_[+1(3.02e-05)]_\ 35 chr2R:9846473-9846593 1.00e-03 1_[+3(1.26e-05)]_24_[+4(8.70e-05)]_\ 79 chrX:10595936-10596056 5.06e-03 111_[+1(3.02e-05)]_1 chr2L:19063254-19063374 3.87e-04 2_[+1(3.02e-05)]_17_[+1(9.05e-05)]_\ 85 chr3R:16643620-16643740 5.68e-03 120 chrX:8116140-8116260 2.38e-02 7_[+3(8.44e-05)]_105 chr2L:19530462-19530582 9.85e-01 120 chr2R:9843692-9843812 1.39e-01 120 chr2R:17792472-17792592 1.25e-02 69_[+2(7.84e-05)]_43 chr2R:12958771-12958891 2.21e-01 71_[+2(7.84e-05)]_41 chr3R:25056143-25056263 4.81e-05 40_[+2(1.06e-05)]_10_[+4(4.08e-05)]_\ 54 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************