******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18764.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:29935858-29935978 1.0000 120 chrX:15091291-15091411 1.0000 120 chrX:19701722-19701842 1.0000 120 chrX:14200095-14200215 1.0000 120 chr3L:23738573-23738693 1.0000 120 chrX:16313125-16313245 1.0000 120 chr3L:1628585-1628705 1.0000 120 chr2R:24099108-24099228 1.0000 120 chr3R:21591471-21591591 1.0000 120 chr3L:16730796-16730916 1.0000 120 chr3L:3334945-3335065 1.0000 120 chr3R:21130160-21130280 1.0000 120 chr2R:6612933-6613053 1.0000 120 chrX:2225162-2225282 1.0000 120 chr2R:24063000-24063120 1.0000 120 chrX:2714975-2715095 1.0000 120 chrX:15462479-15462599 1.0000 120 chr2R:14357267-14357387 1.0000 120 chrX:8510801-8510921 1.0000 120 chr3L:15493898-15494018 1.0000 120 chr2L:2192328-2192448 1.0000 120 chr3R:16655848-16655968 1.0000 120 chr2R:4744248-4744368 1.0000 120 chr2R:11640927-11641047 1.0000 120 chrX:8295118-8295238 1.0000 120 chr3L:13033467-13033587 1.0000 120 chr3L:18819438-18819558 1.0000 120 chr3L:11107568-11107688 1.0000 120 chrX:12744339-12744459 1.0000 120 chr2R:5128310-5128430 1.0000 120 chr2R:4788715-4788835 1.0000 120 chr3R:20593021-20593141 1.0000 120 chr3R:9730917-9731037 1.0000 120 chr2L:22131305-22131425 1.0000 120 chr2R:16164044-16164164 1.0000 120 chrX:15910107-15910227 1.0000 120 chr2R:5122251-5122371 1.0000 120 chrX:16968670-16968790 1.0000 120 chr3L:3983526-3983646 1.0000 120 chr3R:23181089-23181209 1.0000 120 chr2L:283194-283314 1.0000 120 chrX:16313333-16313453 1.0000 120 chr3L:27278432-27278552 1.0000 120 chr2L:4813136-4813256 1.0000 120 chr3R:4400200-4400320 1.0000 120 chr2R:5122454-5122574 1.0000 120 chr3L:16595040-16595160 1.0000 120 chrX:22444363-22444483 1.0000 120 chrX:7946979-7947099 1.0000 120 chr3L:361377-361497 1.0000 120 chr2R:17062629-17062749 1.0000 120 chr2R:6196635-6196755 1.0000 120 chr3L:27136385-27136505 1.0000 120 chr3L:11681858-11681978 1.0000 120 chr3R:29251712-29251832 1.0000 120 chrX:16320346-16320466 1.0000 120 chr2L:9775345-9775465 1.0000 120 chr3L:9614087-9614207 1.0000 120 chr2R:18977444-18977564 1.0000 120 chr3R:4654695-4654815 1.0000 120 chrX:15626445-15626565 1.0000 120 chr2R:14357468-14357588 1.0000 120 chr3R:4400406-4400526 1.0000 120 chr3L:11285189-11285309 1.0000 120 chr3L:2393202-2393322 1.0000 120 chr3L:16602890-16603010 1.0000 120 chr2R:22540003-22540123 1.0000 120 chrX:7571345-7571465 1.0000 120 chr3R:21134064-21134184 1.0000 120 chr2L:10986323-10986443 1.0000 120 chr2R:22538843-22538963 1.0000 120 chr2L:18449057-18449177 1.0000 120 chr2R:22661349-22661469 1.0000 120 chr2R:24046803-24046923 1.0000 120 chr2L:10736082-10736202 1.0000 120 chrX:1512940-1513060 1.0000 120 chr2R:23898482-23898602 1.0000 120 chr2L:5771323-5771443 1.0000 120 chr2R:6464949-6465069 1.0000 120 chr2L:6357090-6357210 1.0000 120 chr3R:19011091-19011211 1.0000 120 chr2L:7997778-7997898 1.0000 120 chr3L:14999732-14999852 1.0000 120 chr2L:3397714-3397834 1.0000 120 chr4:132062-132182 1.0000 120 chrX:8510168-8510288 1.0000 120 chr2R:5123448-5123568 1.0000 120 chr3L:12741636-12741756 1.0000 120 chr2R:10122658-10122778 1.0000 120 chr3R:17966171-17966291 1.0000 120 chr2L:5042251-5042371 1.0000 120 chr2L:9918128-9918248 1.0000 120 chr3R:28552389-28552509 1.0000 120 chr3L:20771144-20771264 1.0000 120 chr2R:14362894-14363014 1.0000 120 chr2R:6652920-6653040 1.0000 120 chr3R:25591650-25591770 1.0000 120 chr3L:27279198-27279318 1.0000 120 chr3L:11993146-11993266 1.0000 120 chr2L:2864747-2864867 1.0000 120 chr2R:4516467-4516587 1.0000 120 chr2L:10428656-10428776 1.0000 120 chr3L:11248445-11248565 1.0000 120 chrX:5309134-5309254 1.0000 120 chr2R:9087672-9087792 1.0000 120 chr3R:29005016-29005136 1.0000 120 chr3R:21580211-21580331 1.0000 120 chr3L:16056358-16056478 1.0000 120 chrX:2011677-2011797 1.0000 120 chr3L:128564-128684 1.0000 120 chr3R:29089757-29089877 1.0000 120 chr2R:14161312-14161432 1.0000 120 chr3R:31309383-31309503 1.0000 120 chr2L:18906757-18906877 1.0000 120 chr2L:3228843-3228963 1.0000 120 chr3R:16573949-16574069 1.0000 120 chr2L:7266082-7266202 1.0000 120 chr3R:27274650-27274770 1.0000 120 chr3R:14351513-14351633 1.0000 120 chrX:20506078-20506198 1.0000 120 chr3L:16697222-16697342 1.0000 120 chr2R:21535574-21535694 1.0000 120 chr2R:9309610-9309730 1.0000 120 chr3L:22163895-22164015 1.0000 120 chr2R:14803487-14803607 1.0000 120 chr3R:17043237-17043357 1.0000 120 chr2R:18451073-18451193 1.0000 120 chr3R:11628562-11628682 1.0000 120 chr3L:9838661-9838781 1.0000 120 chr2L:12002939-12003059 1.0000 120 chr2R:15818636-15818756 1.0000 120 chr3L:3305591-3305711 1.0000 120 chr3R:21271370-21271490 1.0000 120 chr3L:12350409-12350529 1.0000 120 chr2L:974219-974339 1.0000 120 chr2L:4133213-4133333 1.0000 120 chr2L:19884688-19884808 1.0000 120 chr2R:23977304-23977424 1.0000 120 chr2R:20906664-20906784 1.0000 120 chr3R:18242116-18242236 1.0000 120 chr3L:14328431-14328551 1.0000 120 chr3R:29493423-29493543 1.0000 120 chr2R:4618828-4618948 1.0000 120 chr3R:5636878-5636998 1.0000 120 chr3L:16640656-16640776 1.0000 120 chr3L:13022688-13022808 1.0000 120 chrX:2396639-2396759 1.0000 120 chr3L:3320191-3320311 1.0000 120 chr2L:22168506-22168626 1.0000 120 chr3L:10428220-10428340 1.0000 120 chr3R:9345004-9345124 1.0000 120 chr2R:18528515-18528635 1.0000 120 chr3L:9972651-9972771 1.0000 120 chr2L:3856465-3856585 1.0000 120 chrX:17473434-17473554 1.0000 120 chrX:15653664-15653784 1.0000 120 chr2R:9546529-9546649 1.0000 120 chr3R:5660066-5660186 1.0000 120 chr3R:10641432-10641552 1.0000 120 chr2L:4838629-4838749 1.0000 120 chr2L:14377079-14377199 1.0000 120 chr3L:3380586-3380706 1.0000 120 chr3L:12754946-12755066 1.0000 120 chr2L:15442253-15442373 1.0000 120 chr2L:283398-283518 1.0000 120 chr3L:8445101-8445221 1.0000 120 chrX:19704190-19704310 1.0000 120 chr2L:9763250-9763370 1.0000 120 chr3L:11429901-11430021 1.0000 120 chr2L:12372536-12372656 1.0000 120 chr3L:9461740-9461860 1.0000 120 chr4:446106-446226 1.0000 120 chr3L:9371023-9371143 1.0000 120 chr2L:21096550-21096670 1.0000 120 chr3R:26444216-26444336 1.0000 120 chr3L:21007840-21007960 1.0000 120 chr3R:8180528-8180648 1.0000 120 chr4:307976-308096 1.0000 120 chr3R:12630398-12630518 1.0000 120 chr3R:10203677-10203797 1.0000 120 chr2R:12437143-12437263 1.0000 120 chr3R:19165043-19165163 1.0000 120 chr3L:5988775-5988895 1.0000 120 chr2L:18590713-18590833 1.0000 120 chr3L:13922417-13922537 1.0000 120 chrX:6615589-6615709 1.0000 120 chr3L:6216073-6216193 1.0000 120 chr3R:6657486-6657606 1.0000 120 chrX:22837499-22837619 1.0000 120 chrX:5285957-5286077 1.0000 120 chr2L:1123501-1123621 1.0000 120 chr2R:9286594-9286714 1.0000 120 chr3R:20588532-20588652 1.0000 120 chr2R:9006879-9006999 1.0000 120 chr2R:6707743-6707863 1.0000 120 chrX:11720408-11720528 1.0000 120 chr3L:4521919-4522039 1.0000 120 chr2L:18822961-18823081 1.0000 120 chr2L:1428504-1428624 1.0000 120 chr3R:5251040-5251160 1.0000 120 chr3R:13033240-13033360 1.0000 120 chr3L:15691253-15691373 1.0000 120 chr3L:8584234-8584354 1.0000 120 chr2R:19146092-19146212 1.0000 120 chr3R:31169129-31169249 1.0000 120 chr3R:13683821-13683941 1.0000 120 chrX:20631236-20631356 1.0000 120 chrX:2978223-2978343 1.0000 120 chr3R:30413962-30414082 1.0000 120 chr3L:13450308-13450428 1.0000 120 chr2R:14352063-14352183 1.0000 120 chr3R:26536192-26536312 1.0000 120 chr2R:9406878-9406998 1.0000 120 chr3L:12037975-12038095 1.0000 120 chr3L:14190153-14190273 1.0000 120 chrX:3188568-3188688 1.0000 120 chr2L:19377544-19377664 1.0000 120 chr3R:26172130-26172250 1.0000 120 chr3R:20259571-20259691 1.0000 120 chrX:6621675-6621795 1.0000 120 chr2L:3598628-3598748 1.0000 120 chr2L:3852313-3852433 1.0000 120 chrX:5639239-5639359 1.0000 120 chr2R:15477974-15478094 1.0000 120 chrX:7617064-7617184 1.0000 120 chr3R:5685724-5685844 1.0000 120 chr3L:18204091-18204211 1.0000 120 chr3R:31744187-31744307 1.0000 120 chr3R:16837961-16838081 1.0000 120 chr2L:5256610-5256730 1.0000 120 chr2L:5798133-5798253 1.0000 120 chr3L:3090796-3090916 1.0000 120 chr3R:13999704-13999824 1.0000 120 chr3R:16991949-16992069 1.0000 120 chrX:1370156-1370276 1.0000 120 chr3L:11149022-11149142 1.0000 120 chr2R:21183180-21183300 1.0000 120 chr3L:14956438-14956558 1.0000 120 chr3L:613689-613809 1.0000 120 chr3R:24271287-24271407 1.0000 120 chr3R:31395354-31395474 1.0000 120 chr3R:22447889-22448009 1.0000 120 chr3R:29522350-29522470 1.0000 120 chr2R:21018396-21018516 1.0000 120 chr2L:21237250-21237370 1.0000 120 chr2R:20582424-20582544 1.0000 120 chr2L:12351077-12351197 1.0000 120 chr3L:745663-745783 1.0000 120 chr3R:5613234-5613354 1.0000 120 chr2R:18514024-18514144 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG18764/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18764.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.319 C 0.189 G 0.181 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.319 C 0.189 G 0.181 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTGAMC MEME-1 width = 8 sites = 18 llr = 189 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGAMC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::84: pos.-specific C ::::::6a probability G a:a:a::: matrix T :a:a:2:: bits 2.5 * * * * 2.2 * * * * 2.0 * * * * 1.7 ***** * Relative 1.5 ***** * Entropy 1.2 ***** * (15.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAMC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24271287-24271407 89 6.54e-06 CTGCCCTGCA GTGTGACC AGAGATTAGT chr3R:26536192-26536312 48 6.54e-06 GTTGCTAGTA GTGTGACC AGACGGCGAT chr3R:18242116-18242236 39 6.54e-06 ATTAAAGCTA GTGTGACC AAAGGACGCC chr3L:361377-361497 66 6.54e-06 TAACGCGACA GTGTGACC GAATATAGTT chr3R:20593021-20593141 25 6.54e-06 CGCGTGTTTA GTGTGACC TCAGCTGCTT chr2R:11640927-11641047 27 6.54e-06 GGGCGGGTCA GTGTGACC CTCTCGCGGT chr2L:2192328-2192448 63 6.54e-06 TCCAGTGAGC GTGTGACC AGAGGAGATA chr3R:21130160-21130280 17 6.54e-06 GGCAAAGGCT GTGTGACC AGCTATCGGT chr3L:16730796-16730916 81 6.54e-06 CTATCGCGCG GTGTGACC CTTTGTACTT chrX:19701722-19701842 15 6.54e-06 ATAATGGCCA GTGTGACC AGGCACCGAT chrX:2978223-2978343 66 1.76e-05 AGCCTTCAAA GTGTGAAC TTTTATTTGA chr3R:16573949-16574069 28 1.76e-05 ATGGTCATCA GTGTGAAC ACCCCTTACG chr2R:14362894-14363014 54 1.76e-05 AAACGCGGTT GTGTGAAC GGTGTATAAT chr3R:4400406-4400526 61 1.76e-05 TTGCGGCCTC GTGTGAAC AGCCCTAATC chr2L:4838629-4838749 50 3.47e-05 TGACGTGGGT GTGTGTAC ATATCGAATT chr3L:3320191-3320311 102 3.47e-05 CCAAATCTGG GTGTGTAC TTAGCTAATT chr3R:28552389-28552509 24 3.47e-05 GTGTGCGAGT GTGTGTAC ATTATGATCA chrX:16313125-16313245 24 3.47e-05 ATCAACGCTT GTGTGTAC ACATACACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAMC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24271287-24271407 6.5e-06 88_[+1]_24 chr3R:26536192-26536312 6.5e-06 47_[+1]_65 chr3R:18242116-18242236 6.5e-06 38_[+1]_74 chr3L:361377-361497 6.5e-06 65_[+1]_47 chr3R:20593021-20593141 6.5e-06 24_[+1]_88 chr2R:11640927-11641047 6.5e-06 26_[+1]_86 chr2L:2192328-2192448 6.5e-06 62_[+1]_50 chr3R:21130160-21130280 6.5e-06 16_[+1]_96 chr3L:16730796-16730916 6.5e-06 80_[+1]_32 chrX:19701722-19701842 6.5e-06 14_[+1]_98 chrX:2978223-2978343 1.8e-05 65_[+1]_47 chr3R:16573949-16574069 1.8e-05 27_[+1]_85 chr2R:14362894-14363014 1.8e-05 53_[+1]_59 chr3R:4400406-4400526 1.8e-05 60_[+1]_52 chr2L:4838629-4838749 3.5e-05 49_[+1]_63 chr3L:3320191-3320311 3.5e-05 101_[+1]_11 chr3R:28552389-28552509 3.5e-05 23_[+1]_89 chrX:16313125-16313245 3.5e-05 23_[+1]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAMC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGAMC width=8 seqs=18 chr3R:24271287-24271407 ( 89) GTGTGACC 1 chr3R:26536192-26536312 ( 48) GTGTGACC 1 chr3R:18242116-18242236 ( 39) GTGTGACC 1 chr3L:361377-361497 ( 66) GTGTGACC 1 chr3R:20593021-20593141 ( 25) GTGTGACC 1 chr2R:11640927-11641047 ( 27) GTGTGACC 1 chr2L:2192328-2192448 ( 63) GTGTGACC 1 chr3R:21130160-21130280 ( 17) GTGTGACC 1 chr3L:16730796-16730916 ( 81) GTGTGACC 1 chrX:19701722-19701842 ( 15) GTGTGACC 1 chrX:2978223-2978343 ( 66) GTGTGAAC 1 chr3R:16573949-16574069 ( 28) GTGTGAAC 1 chr2R:14362894-14363014 ( 54) GTGTGAAC 1 chr3R:4400406-4400526 ( 61) GTGTGAAC 1 chr2L:4838629-4838749 ( 50) GTGTGTAC 1 chr3L:3320191-3320311 ( 102) GTGTGTAC 1 chr3R:28552389-28552509 ( 24) GTGTGTAC 1 chrX:16313125-16313245 ( 24) GTGTGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAMC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 2.5e-004 -1081 -1081 247 -1081 -1081 -1081 -1081 168 -1081 -1081 247 -1081 -1081 -1081 -1081 168 -1081 -1081 247 -1081 128 -1081 -1081 -49 48 156 -1081 -1081 -1081 241 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAMC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.5e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.777778 0.000000 0.000000 0.222222 0.444444 0.555556 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAMC MEME-1 regular expression -------------------------------------------------------------------------------- GTGTG[AT][CA]C -------------------------------------------------------------------------------- Time 7.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GBGGCGCC MEME-2 width = 8 sites = 17 llr = 175 E-value = 1.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GBGGCGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 112::::: pos.-specific C :2::a:99 probability G 938a:a:1 matrix T :4::::1: bits 2.5 *** 2.2 *** 2.0 *** * 1.7 * ****** Relative 1.5 * ****** Entropy 1.2 * ****** (14.8 bits) 1.0 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel GTGGCGCC consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBGGCGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9614087-9614207 88 1.31e-06 CCACACTTTT GGGGCGCC ACTAAGGTAA chr3R:21591471-21591591 26 1.31e-06 TTGTCTGTGT GGGGCGCC AAAAAGGCGC chr3R:22447889-22448009 84 4.93e-06 ACCGTTCGCT GTGGCGCC TAAAAAACCA chr3R:16573949-16574069 88 4.93e-06 TCTGCACCAG GTGGCGCC ACTTCCGCGC chr3L:11248445-11248565 98 4.93e-06 TGGCCGCTAG GTGGCGCC ACGCATGCCG chr3R:25591650-25591770 81 4.93e-06 TCGGCACTTG GTGGCGCC TCTTATAAAA chr2R:14357267-14357387 105 4.93e-06 CGGTATTTCG GCGGCGCC ACTTTCTT chr2R:23898482-23898602 87 6.19e-06 CGATAACATT GGGGCGCG ATGCACGTTG chr2L:4813136-4813256 7 1.43e-05 ATTCGA GCGGCGCG ATTAAAAGTG chrX:15091291-15091411 40 1.43e-05 GTCTTACCCT GAGGCGCC TTGCACCACG chr3R:5685724-5685844 32 2.07e-05 TTTTAAATTT GTAGCGCC TGTTATTTAC chr2R:15818636-15818756 55 2.07e-05 TTACACAAAT GCAGCGCC ACCTATGCGG chr2L:5771323-5771443 19 2.07e-05 TAGTTCTACA GCAGCGCC CTCTCACAGA chr3R:5613234-5613354 82 2.28e-05 GCTGCCATCT GGGGCGTC TATGCGAAGA chrX:16320346-16320466 96 2.51e-05 ACATCACTTT AGGGCGCC CATAAACGCA chr3R:13683821-13683941 17 3.11e-05 CATAACAATG GTGGCGTC ACAGGGGTGC chr2R:20906664-20906784 91 3.75e-05 CCAACGGTAG ATGGCGCC AGTGCAACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBGGCGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9614087-9614207 1.3e-06 87_[+2]_25 chr3R:21591471-21591591 1.3e-06 25_[+2]_87 chr3R:22447889-22448009 4.9e-06 83_[+2]_29 chr3R:16573949-16574069 4.9e-06 87_[+2]_25 chr3L:11248445-11248565 4.9e-06 97_[+2]_15 chr3R:25591650-25591770 4.9e-06 80_[+2]_32 chr2R:14357267-14357387 4.9e-06 104_[+2]_8 chr2R:23898482-23898602 6.2e-06 86_[+2]_26 chr2L:4813136-4813256 1.4e-05 6_[+2]_106 chrX:15091291-15091411 1.4e-05 39_[+2]_73 chr3R:5685724-5685844 2.1e-05 31_[+2]_81 chr2R:15818636-15818756 2.1e-05 54_[+2]_58 chr2L:5771323-5771443 2.1e-05 18_[+2]_94 chr3R:5613234-5613354 2.3e-05 81_[+2]_31 chrX:16320346-16320466 2.5e-05 95_[+2]_17 chr3R:13683821-13683941 3.1e-05 16_[+2]_96 chr2R:20906664-20906784 3.7e-05 90_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBGGCGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GBGGCGCC width=8 seqs=17 chr3L:9614087-9614207 ( 88) GGGGCGCC 1 chr3R:21591471-21591591 ( 26) GGGGCGCC 1 chr3R:22447889-22448009 ( 84) GTGGCGCC 1 chr3R:16573949-16574069 ( 88) GTGGCGCC 1 chr3L:11248445-11248565 ( 98) GTGGCGCC 1 chr3R:25591650-25591770 ( 81) GTGGCGCC 1 chr2R:14357267-14357387 ( 105) GCGGCGCC 1 chr2R:23898482-23898602 ( 87) GGGGCGCG 1 chr2L:4813136-4813256 ( 7) GCGGCGCG 1 chrX:15091291-15091411 ( 40) GAGGCGCC 1 chr3R:5685724-5685844 ( 32) GTAGCGCC 1 chr2R:15818636-15818756 ( 55) GCAGCGCC 1 chr2L:5771323-5771443 ( 19) GCAGCGCC 1 chr3R:5613234-5613354 ( 82) GGGGCGTC 1 chrX:16320346-16320466 ( 96) AGGGCGCC 1 chr3R:13683821-13683941 ( 17) GTGGCGTC 1 chr2R:20906664-20906784 ( 91) ATGGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBGGCGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 1.2e-002 -144 -1073 229 -1073 -244 32 70 40 -86 -1073 219 -1073 -1073 -1073 247 -1073 -1073 241 -1073 -1073 -1073 -1073 247 -1073 -1073 223 -1073 -140 -1073 223 -62 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBGGCGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.2e-002 0.117647 0.000000 0.882353 0.000000 0.058824 0.235294 0.294118 0.411765 0.176471 0.000000 0.823529 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.882353 0.000000 0.117647 0.000000 0.882353 0.117647 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBGGCGCC MEME-2 regular expression -------------------------------------------------------------------------------- G[TGC]GGCGCC -------------------------------------------------------------------------------- Time 13.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTGCW MEME-3 width = 8 sites = 17 llr = 170 E-value = 6.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTGCW MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::4 pos.-specific C ::::::a: probability G :a:::a:1 matrix T a:aaa::5 bits 2.5 * ** 2.2 * ** 2.0 * ** 1.7 ******* Relative 1.5 ******* Entropy 1.2 ******* (14.5 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTTTGCT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9406878-9406998 7 1.80e-05 ggttta tgtttGCT ATTGGGTGGA chr2R:9006879-9006999 54 1.80e-05 TTCTGGCTAA TGTTTGCT GCCTCTGTTT chr3L:6216073-6216193 22 1.80e-05 TCTTGGGTTA TGTTTGCT TTTTAATTTG chr3R:10203677-10203797 65 1.80e-05 CAAATATTTA TGTTTGCT TACAGTGCAT chr3R:8180528-8180648 107 1.80e-05 TTGCCTTCAT TGTTTGCT TATGGC chr3L:22163895-22164015 77 1.80e-05 CATGGCGCTA TGTTTGCT TTCGGTTGTT chr3L:16056358-16056478 47 1.80e-05 TCAACATCAA TGTTTGCT TGATAAATAA chr2L:3397714-3397834 54 1.80e-05 AAACTCGGTT TGTTTGCT TGTTTGTTCG chr3L:11107568-11107688 47 1.80e-05 TTATTCATTT TGTTTGCT TGTCAGTCAC chrX:11720408-11720528 39 3.65e-05 TCTGCCCTGC TGTTTGCA ATCCATGCCT chrX:5285957-5286077 25 3.65e-05 GCTCATTATC TGTTTGCA TGCGAAAATT chrX:22837499-22837619 48 3.65e-05 AAAAAACCCG TGTTTGCA ATACAATTAA chr3L:12350409-12350529 47 3.65e-05 TCGGCGTGGC TGTTTGCA TTCACATTTC chrX:20506078-20506198 25 3.65e-05 GATTTCAATA TGTTTGCA CTTCCCATTT chr2R:14161312-14161432 41 3.65e-05 TATATATTTA TGTTTGCA ATTATATTTA chr2R:22540003-22540123 61 4.70e-05 TAAATTTCCA TGTTTGCG CACTTAACAG chr2L:9775345-9775465 99 4.70e-05 AATAGGAAAT TGTTTGCG GCAAATATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9406878-9406998 1.8e-05 6_[+3]_106 chr2R:9006879-9006999 1.8e-05 53_[+3]_59 chr3L:6216073-6216193 1.8e-05 21_[+3]_91 chr3R:10203677-10203797 1.8e-05 64_[+3]_48 chr3R:8180528-8180648 1.8e-05 106_[+3]_6 chr3L:22163895-22164015 1.8e-05 76_[+3]_36 chr3L:16056358-16056478 1.8e-05 46_[+3]_66 chr2L:3397714-3397834 1.8e-05 53_[+3]_59 chr3L:11107568-11107688 1.8e-05 46_[+3]_66 chrX:11720408-11720528 3.6e-05 38_[+3]_74 chrX:5285957-5286077 3.6e-05 24_[+3]_88 chrX:22837499-22837619 3.6e-05 47_[+3]_65 chr3L:12350409-12350529 3.6e-05 46_[+3]_66 chrX:20506078-20506198 3.6e-05 24_[+3]_88 chr2R:14161312-14161432 3.6e-05 40_[+3]_72 chr2R:22540003-22540123 4.7e-05 60_[+3]_52 chr2L:9775345-9775465 4.7e-05 98_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTGCW width=8 seqs=17 chr2R:9406878-9406998 ( 7) TGTTTGCT 1 chr2R:9006879-9006999 ( 54) TGTTTGCT 1 chr3L:6216073-6216193 ( 22) TGTTTGCT 1 chr3R:10203677-10203797 ( 65) TGTTTGCT 1 chr3R:8180528-8180648 ( 107) TGTTTGCT 1 chr3L:22163895-22164015 ( 77) TGTTTGCT 1 chr3L:16056358-16056478 ( 47) TGTTTGCT 1 chr2L:3397714-3397834 ( 54) TGTTTGCT 1 chr3L:11107568-11107688 ( 47) TGTTTGCT 1 chrX:11720408-11720528 ( 39) TGTTTGCA 1 chrX:5285957-5286077 ( 25) TGTTTGCA 1 chrX:22837499-22837619 ( 48) TGTTTGCA 1 chr3L:12350409-12350529 ( 47) TGTTTGCA 1 chrX:20506078-20506198 ( 25) TGTTTGCA 1 chr2R:14161312-14161432 ( 41) TGTTTGCA 1 chr2R:22540003-22540123 ( 61) TGTTTGCG 1 chr2L:9775345-9775465 ( 99) TGTTTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 6.0e+000 -1073 -1073 -1073 168 -1073 -1073 247 -1073 -1073 -1073 -1073 168 -1073 -1073 -1073 168 -1073 -1073 -1073 168 -1073 -1073 247 -1073 -1073 241 -1073 -1073 14 -1073 -62 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 6.0e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.352941 0.000000 0.117647 0.529412 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGCW MEME-3 regular expression -------------------------------------------------------------------------------- TGTTTGC[TA] -------------------------------------------------------------------------------- Time 19.73 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGGGCCC MEME-4 width = 8 sites = 10 llr = 103 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGGGCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a1::::: pos.-specific C ::::198a probability G ::98912: matrix T a::2:::: bits 2.5 * 2.2 * 2.0 * ** * 1.7 *** **** Relative 1.5 ******** Entropy 1.2 ******** (14.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TAGGGCCC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGGGCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2225162-2225282 70 3.97e-06 CGAAGTGCGA TAGGGCCC GATAGGTTCG chrX:16313125-16313245 58 3.97e-06 ACACGCTGTT TAGGGCCC TTATACACGA chrX:19701722-19701842 70 3.97e-06 CCGTTAGTGT TAGGGCCC CTTACACGAG chr3R:24271287-24271407 66 7.78e-06 TGCCGATAGT TAGGGCGC AAAATCTGCC chr2L:283194-283314 27 7.78e-06 AACAGCTGAT TAGGGCGC AACACACGTC chr3L:3090796-3090916 101 1.46e-05 TAATTTTTAG TAGTGCCC TGTCGCAAGA chr2R:6652920-6653040 61 1.46e-05 TAAAATGTTA TAGTGCCC AATCTTTGAC chr2R:22538843-22538963 76 1.84e-05 AAATAATGAC TAGGGGCC ACACAGGAAA chr3L:13033467-13033587 84 2.26e-05 TGCACGTGTA TAGGCCCC CTTTTCCGCT chr3L:13922417-13922537 36 2.95e-05 TATGGTGATT TAAGGCCC AACAAATTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGGGCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2225162-2225282 4e-06 69_[+4]_43 chrX:16313125-16313245 4e-06 57_[+4]_55 chrX:19701722-19701842 4e-06 69_[+4]_43 chr3R:24271287-24271407 7.8e-06 65_[+4]_47 chr2L:283194-283314 7.8e-06 26_[+4]_86 chr3L:3090796-3090916 1.5e-05 100_[+4]_12 chr2R:6652920-6653040 1.5e-05 60_[+4]_52 chr2R:22538843-22538963 1.8e-05 75_[+4]_37 chr3L:13033467-13033587 2.3e-05 83_[+4]_29 chr3L:13922417-13922537 3e-05 35_[+4]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGGGCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGGGCCC width=8 seqs=10 chrX:2225162-2225282 ( 70) TAGGGCCC 1 chrX:16313125-16313245 ( 58) TAGGGCCC 1 chrX:19701722-19701842 ( 70) TAGGGCCC 1 chr3R:24271287-24271407 ( 66) TAGGGCGC 1 chr2L:283194-283314 ( 27) TAGGGCGC 1 chr3L:3090796-3090916 ( 101) TAGTGCCC 1 chr2R:6652920-6653040 ( 61) TAGTGCCC 1 chr2R:22538843-22538963 ( 76) TAGGGGCC 1 chr3L:13033467-13033587 ( 84) TAGGCCCC 1 chr3L:13922417-13922537 ( 36) TAAGGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGGGCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 2.0e+004 -997 -997 -997 168 165 -997 -997 -997 -167 -997 231 -997 -997 -997 214 -64 -997 -91 231 -997 -997 225 -85 -997 -997 208 15 -997 -997 241 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGGGCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.0e+004 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.100000 0.900000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGGGCCC MEME-4 regular expression -------------------------------------------------------------------------------- TAG[GT]GC[CG]C -------------------------------------------------------------------------------- Time 25.89 secs. ******************************************************************************** ******************************************************************************** MOTIF TSBCAGTG MEME-5 width = 8 sites = 18 llr = 172 E-value = 6.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSBCAGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :63a:::: probability G 243::a:a matrix T 8:4:::a: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 ***** Relative 1.5 * ***** Entropy 1.2 * ***** (13.8 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCAGTG consensus GGG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSBCAGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29522350-29522470 101 1.34e-05 CGACCTTTTC TCCCAGTG CATAAAGGGA chr3R:31395354-31395474 99 1.34e-05 TATCGCGGAA TCCCAGTG GGAGGAGTTT chr3R:13999704-13999824 106 1.34e-05 TTTCCGTTTC TCCCAGTG TACTGCA chr3R:5685724-5685844 76 1.34e-05 CAACACTGCT TCCCAGTG GCTGGCACTC chr2L:12351077-12351197 97 3.08e-05 TCTTAGTTGT TCTCAGTG TACTTGCATC chr3L:18204091-18204211 103 3.08e-05 CCTGAATTTT TCTCAGTG CAGCAGTTTC chr3R:17043237-17043357 89 3.08e-05 ATACGAAATT TGGCAGTG GTTAAATCAT chr2R:14803487-14803607 84 3.08e-05 ATTAAATTTC TCTCAGTG CACTTAGGCA chr3L:11285189-11285309 36 3.08e-05 AGCCCTCTTT TGGCAGTG TCTAAACAAT chr3R:4654695-4654815 55 3.08e-05 ACTCTGTCTG TGGCAGTG AACATGCAGA chr3L:15493898-15494018 82 3.08e-05 ATGCCCAATT TCTCAGTG CGTTGCGTGC chr2L:3598628-3598748 105 4.12e-05 CACTTTTTTC GCGCAGTG CACAATCC chr3L:13450308-13450428 3 4.12e-05 CA GCGCAGTG TAATGTGGGG chr2L:4813136-4813256 96 4.12e-05 AGCCGCGCAT GCGCAGTG AATTTTAAAA chr3R:5251040-5251160 84 5.19e-05 CATCCTTTCT TGTCAGTG TACTTCAAAG chr3L:27279198-27279318 95 5.19e-05 TTATTTAACA TGTCAGTG TAATTATTTT chr2L:9918128-9918248 85 5.19e-05 GGAGTGCGGC TGTCAGTG GCTGTCGATT chr3R:22447889-22448009 64 6.99e-05 GTTTACCAGT GGCCAGTG AGACCGTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSBCAGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29522350-29522470 1.3e-05 100_[+5]_12 chr3R:31395354-31395474 1.3e-05 98_[+5]_14 chr3R:13999704-13999824 1.3e-05 105_[+5]_7 chr3R:5685724-5685844 1.3e-05 75_[+5]_37 chr2L:12351077-12351197 3.1e-05 96_[+5]_16 chr3L:18204091-18204211 3.1e-05 102_[+5]_10 chr3R:17043237-17043357 3.1e-05 88_[+5]_24 chr2R:14803487-14803607 3.1e-05 83_[+5]_29 chr3L:11285189-11285309 3.1e-05 35_[+5]_77 chr3R:4654695-4654815 3.1e-05 54_[+5]_58 chr3L:15493898-15494018 3.1e-05 81_[+5]_31 chr2L:3598628-3598748 4.1e-05 104_[+5]_8 chr3L:13450308-13450428 4.1e-05 2_[+5]_110 chr2L:4813136-4813256 4.1e-05 95_[+5]_17 chr3R:5251040-5251160 5.2e-05 83_[+5]_29 chr3L:27279198-27279318 5.2e-05 94_[+5]_18 chr2L:9918128-9918248 5.2e-05 84_[+5]_28 chr3R:22447889-22448009 7e-05 63_[+5]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSBCAGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSBCAGTG width=8 seqs=18 chr3R:29522350-29522470 ( 101) TCCCAGTG 1 chr3R:31395354-31395474 ( 99) TCCCAGTG 1 chr3R:13999704-13999824 ( 106) TCCCAGTG 1 chr3R:5685724-5685844 ( 76) TCCCAGTG 1 chr2L:12351077-12351197 ( 97) TCTCAGTG 1 chr3L:18204091-18204211 ( 103) TCTCAGTG 1 chr3R:17043237-17043357 ( 89) TGGCAGTG 1 chr2R:14803487-14803607 ( 84) TCTCAGTG 1 chr3L:11285189-11285309 ( 36) TGGCAGTG 1 chr3R:4654695-4654815 ( 55) TGGCAGTG 1 chr3L:15493898-15494018 ( 82) TCTCAGTG 1 chr2L:3598628-3598748 ( 105) GCGCAGTG 1 chr3L:13450308-13450428 ( 3) GCGCAGTG 1 chr2L:4813136-4813256 ( 96) GCGCAGTG 1 chr3R:5251040-5251160 ( 84) TGTCAGTG 1 chr3L:27279198-27279318 ( 95) TGTCAGTG 1 chr2L:9918128-9918248 ( 85) TGTCAGTG 1 chr3R:22447889-22448009 ( 64) GGCCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSBCAGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 6.5e+003 -1081 -1081 30 132 -1081 170 110 -1081 -1081 56 88 32 -1081 241 -1081 -1081 165 -1081 -1081 -1081 -1081 -1081 247 -1081 -1081 -1081 -1081 168 -1081 -1081 247 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSBCAGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.5e+003 0.000000 0.000000 0.222222 0.777778 0.000000 0.611111 0.388889 0.000000 0.000000 0.277778 0.333333 0.388889 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSBCAGTG MEME-5 regular expression -------------------------------------------------------------------------------- [TG][CG][TGC]CAGTG -------------------------------------------------------------------------------- Time 32.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29935858-29935978 9.15e-01 120 chrX:15091291-15091411 3.49e-03 39_[+2(1.43e-05)]_73 chrX:19701722-19701842 2.15e-06 14_[+1(6.54e-06)]_31_[+1(8.82e-05)]_\ 8_[+4(3.97e-06)]_43 chrX:14200095-14200215 2.98e-01 120 chr3L:23738573-23738693 2.53e-01 120 chrX:16313125-16313245 1.39e-03 23_[+1(3.47e-05)]_26_[+4(3.97e-06)]_\ 55 chr3L:1628585-1628705 5.68e-04 120 chr2R:24099108-24099228 5.85e-02 120 chr3R:21591471-21591591 3.50e-05 25_[+2(1.31e-06)]_87 chr3L:16730796-16730916 3.64e-04 80_[+1(6.54e-06)]_32 chr3L:3334945-3335065 1.56e-01 120 chr3R:21130160-21130280 2.29e-03 16_[+1(6.54e-06)]_96 chr2R:6612933-6613053 6.82e-01 120 chrX:2225162-2225282 2.44e-04 69_[+4(3.97e-06)]_43 chr2R:24063000-24063120 3.06e-01 120 chrX:2714975-2715095 7.82e-02 120 chrX:15462479-15462599 8.05e-01 120 chr2R:14357267-14357387 3.17e-02 104_[+2(4.93e-06)]_8 chrX:8510801-8510921 8.91e-01 120 chr3L:15493898-15494018 3.21e-02 81_[+5(3.08e-05)]_31 chr2L:2192328-2192448 2.24e-03 62_[+1(6.54e-06)]_50 chr3R:16655848-16655968 7.86e-01 120 chr2R:4744248-4744368 8.23e-01 120 chr2R:11640927-11641047 2.31e-04 26_[+1(6.54e-06)]_86 chrX:8295118-8295238 9.96e-01 120 chr3L:13033467-13033587 3.05e-04 83_[+4(2.26e-05)]_29 chr3L:18819438-18819558 9.56e-02 120 chr3L:11107568-11107688 5.37e-02 46_[+3(1.80e-05)]_66 chrX:12744339-12744459 7.00e-01 120 chr2R:5128310-5128430 6.39e-01 120 chr2R:4788715-4788835 7.85e-01 120 chr3R:20593021-20593141 6.65e-03 24_[+1(6.54e-06)]_88 chr3R:9730917-9731037 7.33e-02 120 chr2L:22131305-22131425 2.15e-01 120 chr2R:16164044-16164164 2.42e-01 120 chrX:15910107-15910227 8.82e-01 120 chr2R:5122251-5122371 4.18e-01 120 chrX:16968670-16968790 2.18e-01 120 chr3L:3983526-3983646 2.38e-01 120 chr3R:23181089-23181209 2.76e-01 120 chr2L:283194-283314 5.25e-03 26_[+4(7.78e-06)]_86 chrX:16313333-16313453 9.80e-01 120 chr3L:27278432-27278552 1.23e-01 120 chr2L:4813136-4813256 3.32e-04 6_[+2(1.43e-05)]_24_[+5(5.59e-05)]_\ 49_[+5(4.12e-05)]_17 chr3R:4400200-4400320 9.13e-01 120 chr2R:5122454-5122574 8.06e-01 120 chr3L:16595040-16595160 4.26e-01 120 chrX:22444363-22444483 9.86e-01 120 chrX:7946979-7947099 8.66e-01 120 chr3L:361377-361497 5.96e-03 65_[+1(6.54e-06)]_47 chr2R:17062629-17062749 1.49e-01 120 chr2R:6196635-6196755 1.70e-01 120 chr3L:27136385-27136505 7.61e-02 120 chr3L:11681858-11681978 6.82e-02 120 chr3R:29251712-29251832 3.60e-02 120 chrX:16320346-16320466 5.20e-04 94_[+4(7.78e-06)]_18 chr2L:9775345-9775465 3.00e-01 98_[+3(4.70e-05)]_14 chr3L:9614087-9614207 2.41e-04 87_[+2(1.31e-06)]_25 chr2R:18977444-18977564 1.59e-01 120 chr3R:4654695-4654815 4.32e-02 54_[+5(3.08e-05)]_58 chrX:15626445-15626565 2.27e-01 120 chr2R:14357468-14357588 1.00e+00 120 chr3R:4400406-4400526 3.58e-02 60_[+1(1.76e-05)]_52 chr3L:11285189-11285309 5.63e-02 35_[+5(3.08e-05)]_77 chr3L:2393202-2393322 8.74e-01 120 chr3L:16602890-16603010 8.42e-01 120 chr2R:22540003-22540123 2.71e-01 60_[+3(4.70e-05)]_52 chrX:7571345-7571465 9.96e-01 120 chr3R:21134064-21134184 9.99e-01 120 chr2L:10986323-10986443 6.16e-01 120 chr2R:22538843-22538963 2.34e-02 75_[+4(1.84e-05)]_37 chr2L:18449057-18449177 7.36e-01 120 chr2R:22661349-22661469 8.38e-01 120 chr2R:24046803-24046923 2.11e-01 120 chr2L:10736082-10736202 4.21e-01 120 chrX:1512940-1513060 7.83e-01 120 chr2R:23898482-23898602 5.37e-03 86_[+2(6.19e-06)]_26 chr2L:5771323-5771443 4.46e-02 18_[+2(2.07e-05)]_94 chr2R:6464949-6465069 9.54e-01 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chr3R:5685724-5685844 1.70e-03 31_[+2(2.07e-05)]_36_[+5(1.34e-05)]_\ 37 chr3L:18204091-18204211 2.91e-02 102_[+5(3.08e-05)]_10 chr3R:31744187-31744307 1.97e-01 120 chr3R:16837961-16838081 6.03e-02 120 chr2L:5256610-5256730 9.10e-02 120 chr2L:5798133-5798253 4.01e-01 120 chr3L:3090796-3090916 1.20e-02 100_[+4(1.46e-05)]_12 chr3R:13999704-13999824 1.10e-01 105_[+5(1.34e-05)]_7 chr3R:16991949-16992069 7.77e-01 120 chrX:1370156-1370276 6.06e-02 92_[+5(8.77e-05)]_20 chr3L:11149022-11149142 9.67e-01 120 chr2R:21183180-21183300 9.65e-01 120 chr3L:14956438-14956558 5.16e-01 120 chr3L:613689-613809 9.77e-01 120 chr3R:24271287-24271407 3.91e-05 65_[+4(7.78e-06)]_15_[+1(6.54e-06)]_\ 24 chr3R:31395354-31395474 4.76e-02 98_[+5(1.34e-05)]_14 chr3R:22447889-22448009 7.59e-06 63_[+5(6.99e-05)]_12_[+2(4.93e-06)]_\ 29 chr3R:29522350-29522470 2.58e-02 100_[+5(1.34e-05)]_12 chr2R:21018396-21018516 4.37e-01 120 chr2L:21237250-21237370 1.50e-02 39_[+1(5.93e-05)]_73 chr2R:20582424-20582544 1.64e-02 120 chr2L:12351077-12351197 1.54e-01 96_[+5(3.08e-05)]_16 chr3L:745663-745783 7.21e-01 120 chr3R:5613234-5613354 1.32e-02 81_[+2(2.28e-05)]_31 chr2R:18514024-18514144 5.58e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************