******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18619.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16215137-16215257 1.0000 120 chr3R:18311107-18311227 1.0000 120 chr2L:6089004-6089124 1.0000 120 chr3R:23803797-23803917 1.0000 120 chr3L:12803819-12803939 1.0000 120 chr3L:4000836-4000956 1.0000 120 chr3R:21188243-21188363 1.0000 120 chr2L:14376997-14377117 1.0000 120 chr3R:21187016-21187136 1.0000 120 chr2R:15155050-15155170 1.0000 120 chr3L:10827475-10827595 1.0000 120 chrX:18900095-18900215 1.0000 120 chr2L:7957072-7957192 1.0000 120 chr2R:14136942-14137062 1.0000 120 chr3R:5861564-5861684 1.0000 120 chr2L:3477432-3477552 1.0000 120 chr3L:9125982-9126102 1.0000 120 chr2L:16869200-16869320 1.0000 120 chrX:2591637-2591757 1.0000 120 chr3R:16241916-16242036 1.0000 120 chr2R:10123665-10123785 1.0000 120 chr2R:13015241-13015361 1.0000 120 chrX:15297044-15297164 1.0000 120 chr2R:11192584-11192704 1.0000 120 chr3L:22471745-22471865 1.0000 120 chr3L:8692239-8692359 1.0000 120 chr3R:14875698-14875818 1.0000 120 chr3R:26104291-26104411 1.0000 120 chr2R:11601925-11602045 1.0000 120 chr3L:13356201-13356321 1.0000 120 chr2L:11199203-11199323 1.0000 120 chr3R:6791147-6791267 1.0000 120 chr3R:19165091-19165211 1.0000 120 chr3L:11286682-11286802 1.0000 120 chr2R:7054246-7054366 1.0000 120 chrX:10487997-10488117 1.0000 120 chr3R:25027610-25027730 1.0000 120 chr3R:25123355-25123475 1.0000 120 chr3L:3449803-3449923 1.0000 120 chr3R:15139696-15139816 1.0000 120 chr3R:27988787-27988907 1.0000 120 chr2L:6874730-6874850 1.0000 120 chr2L:19019352-19019472 1.0000 120 chr2R:13008240-13008360 1.0000 120 chr3L:224359-224479 1.0000 120 chrX:5970349-5970469 1.0000 120 chrX:14583407-14583527 1.0000 120 chr2R:21323645-21323765 1.0000 120 chr3L:15592783-15592903 1.0000 120 chr3L:14613950-14614070 1.0000 120 chr2R:20327048-20327168 1.0000 120 chr2R:12174468-12174588 1.0000 120 chrX:10629052-10629172 1.0000 120 chr3L:9066126-9066246 1.0000 120 chr2L:3779288-3779408 1.0000 120 chr3L:16060977-16061097 1.0000 120 chr3R:15139460-15139580 1.0000 120 chrX:7901536-7901656 1.0000 120 chr2L:2872705-2872825 1.0000 120 chr3R:24010989-24011109 1.0000 120 chr3R:30198935-30199055 1.0000 120 chr2R:14906620-14906740 1.0000 120 chr3L:11556823-11556943 1.0000 120 chrX:13404058-13404178 1.0000 120 chr2R:8002313-8002433 1.0000 120 chr3R:28327336-28327456 1.0000 120 chrX:13307406-13307526 1.0000 120 chr3R:18167586-18167706 1.0000 120 chr3L:15034400-15034520 1.0000 120 chr2R:16610077-16610197 1.0000 120 chr3L:5365288-5365408 1.0000 120 chr3L:8763298-8763418 1.0000 120 chr2R:21549123-21549243 1.0000 120 chr3R:24544449-24544569 1.0000 120 chr3L:11278865-11278985 1.0000 120 chr3R:30802295-30802415 1.0000 120 chr2R:16096995-16097115 1.0000 120 chrX:19225143-19225263 1.0000 120 chr2R:15754444-15754564 1.0000 120 chr3R:27153599-27153719 1.0000 120 chr3R:17526197-17526317 1.0000 120 chr2L:7871952-7872072 1.0000 120 chr2R:18397663-18397783 1.0000 120 chr3R:16212950-16213070 1.0000 120 chr2R:17161009-17161129 1.0000 120 chrX:8542105-8542225 1.0000 120 chr2L:4031554-4031674 1.0000 120 chr2R:7241715-7241835 1.0000 120 chr2L:8461973-8462093 1.0000 120 chr2L:1362355-1362475 1.0000 120 chr3L:14172641-14172761 1.0000 120 chr3L:15094910-15095030 1.0000 120 chrX:18404943-18405063 1.0000 120 chr3R:14723689-14723809 1.0000 120 chr3R:24318548-24318668 1.0000 120 chr2L:14021258-14021378 1.0000 120 chr3R:29068868-29068988 1.0000 120 chr3R:15128991-15129111 1.0000 120 chrX:17738009-17738129 1.0000 120 chr3L:3770952-3771072 1.0000 120 chr3R:21176731-21176851 1.0000 120 chrX:9135158-9135278 1.0000 120 chr3R:21161846-21161966 1.0000 120 chrX:20506074-20506194 1.0000 120 chr2R:11204294-11204414 1.0000 120 chr2L:4403151-4403271 1.0000 120 chrX:14169213-14169333 1.0000 120 chrX:6800999-6801119 1.0000 120 chr2R:22886218-22886338 1.0000 120 chrX:15297289-15297409 1.0000 120 chr3L:11580089-11580209 1.0000 120 chr2R:18834922-18835042 1.0000 120 chr2R:17848918-17849038 1.0000 120 chr3L:5185295-5185415 1.0000 120 chrX:2011697-2011817 1.0000 120 chrX:947613-947733 1.0000 120 chr2R:14576131-14576251 1.0000 120 chr3L:13236740-13236860 1.0000 120 chr3L:3437369-3437489 1.0000 120 chrX:16385992-16386112 1.0000 120 chr3L:8526151-8526271 1.0000 120 chr3L:3437138-3437258 1.0000 120 chr3L:15999730-15999850 1.0000 120 chr2R:7984301-7984421 1.0000 120 chr2R:17514138-17514258 1.0000 120 chr3R:10048106-10048226 1.0000 120 chr2L:16647818-16647938 1.0000 120 chr3L:4379058-4379178 1.0000 120 chrX:15384047-15384167 1.0000 120 chr3L:13905575-13905695 1.0000 120 chrX:5892184-5892304 1.0000 120 chrX:21375740-21375860 1.0000 120 chr3R:28590654-28590774 1.0000 120 chrX:7728608-7728728 1.0000 120 chr3R:16069451-16069571 1.0000 120 chrX:16944180-16944300 1.0000 120 chr3L:14978159-14978279 1.0000 120 chr2L:7957290-7957410 1.0000 120 chr3R:23919525-23919645 1.0000 120 chr2L:484260-484380 1.0000 120 chr3L:13922440-13922560 1.0000 120 chr2R:10077936-10078056 1.0000 120 chr2R:17748569-17748689 1.0000 120 chr3L:1035104-1035224 1.0000 120 chr3R:18311403-18311523 1.0000 120 chr2L:5981453-5981573 1.0000 120 chr2L:1628293-1628413 1.0000 120 chr3R:19858415-19858535 1.0000 120 chr2L:5876583-5876703 1.0000 120 chr2L:4440995-4441115 1.0000 120 chr2R:18802311-18802431 1.0000 120 chr2R:13923469-13923589 1.0000 120 chr2L:5045209-5045329 1.0000 120 chrX:9899839-9899959 1.0000 120 chrX:12470746-12470866 1.0000 120 chr3R:16222115-16222235 1.0000 120 chr2L:10565824-10565944 1.0000 120 chr2R:18777032-18777152 1.0000 120 chrX:6614427-6614547 1.0000 120 chr2R:7031135-7031255 1.0000 120 chr2L:13414969-13415089 1.0000 120 chrX:11451227-11451347 1.0000 120 chr2R:20316176-20316296 1.0000 120 chr2R:20257422-20257542 1.0000 120 chr2R:24748940-24749060 1.0000 120 chr2L:6830558-6830678 1.0000 120 chr2L:13398883-13399003 1.0000 120 chr2L:18136693-18136813 1.0000 120 chr2R:14645060-14645180 1.0000 120 chr2L:8602771-8602891 1.0000 120 chrX:17696764-17696884 1.0000 120 chr3L:15921303-15921423 1.0000 120 chr2R:12772788-12772908 1.0000 120 chrX:2087652-2087772 1.0000 120 chr3L:17016146-17016266 1.0000 120 chrX:16834370-16834490 1.0000 120 chr3R:8867933-8868053 1.0000 120 chr3L:13479878-13479998 1.0000 120 chrX:13391287-13391407 1.0000 120 chr3L:10852096-10852216 1.0000 120 chr2R:11275733-11275853 1.0000 120 chr2L:5043959-5044079 1.0000 120 chr3L:7861228-7861348 1.0000 120 chr3R:16210037-16210157 1.0000 120 chr3L:14545540-14545660 1.0000 120 chrX:14215216-14215336 1.0000 120 chr3R:25281297-25281417 1.0000 120 chr3R:5015320-5015440 1.0000 120 chr3R:20834997-20835117 1.0000 120 chr2L:5798123-5798243 1.0000 120 chr2R:11427842-11427962 1.0000 120 chr3R:21339072-21339192 1.0000 120 chr2L:16547813-16547933 1.0000 120 chr2L:6830327-6830447 1.0000 120 chr3R:16213150-16213270 1.0000 120 chrX:21045040-21045160 1.0000 120 chr2R:6970342-6970462 1.0000 120 chr3L:5185503-5185623 1.0000 120 chrX:19663359-19663479 1.0000 120 chr3R:20989825-20989945 1.0000 120 chr3L:11822452-11822572 1.0000 120 chr3L:11350866-11350986 1.0000 120 chrX:12595764-12595884 1.0000 120 chrX:1907777-1907897 1.0000 120 chr2L:14021459-14021579 1.0000 120 chr3R:18197607-18197727 1.0000 120 chr3R:5998399-5998519 1.0000 120 chr2R:21057347-21057467 1.0000 120 chr2L:3476032-3476152 1.0000 120 chrX:12469919-12470039 1.0000 120 chr2R:7748155-7748275 1.0000 120 chr3R:16006083-16006203 1.0000 120 chrX:14766063-14766183 1.0000 120 chr3R:21373533-21373653 1.0000 120 chr3R:9600675-9600795 1.0000 120 chr3R:30191631-30191751 1.0000 120 chr3L:8395745-8395865 1.0000 120 chr3L:13911722-13911842 1.0000 120 chr3R:23729202-23729322 1.0000 120 chr3R:8115392-8115512 1.0000 120 chr3L:6059248-6059368 1.0000 120 chr3L:699527-699647 1.0000 120 chr2R:18326582-18326702 1.0000 120 chrX:9590025-9590145 1.0000 120 chr3L:18786822-18786942 1.0000 120 chr2R:8670941-8671061 1.0000 120 chr3L:11403678-11403798 1.0000 120 chr2L:11528361-11528481 1.0000 120 chr2R:9881455-9881575 1.0000 120 chr2L:161417-161537 1.0000 120 chr3L:12277486-12277606 1.0000 120 chr3R:27152447-27152567 1.0000 120 chr2R:13585457-13585577 1.0000 120 chr3R:14670957-14671077 1.0000 120 chr3L:14762400-14762520 1.0000 120 chr2R:7254449-7254569 1.0000 120 chr3R:10388866-10388986 1.0000 120 chr3R:23225305-23225425 1.0000 120 chr2L:10522541-10522661 1.0000 120 chrX:7001154-7001274 1.0000 120 chrX:17713569-17713689 1.0000 120 chr3L:15704345-15704465 1.0000 120 chrX:6316969-6317089 1.0000 120 chr3R:5470832-5470952 1.0000 120 chr3L:8063526-8063646 1.0000 120 chr2R:21507951-21508071 1.0000 120 chr2L:2176029-2176149 1.0000 120 chr3R:6468109-6468229 1.0000 120 chr3R:16209134-16209254 1.0000 120 chr3L:20185492-20185612 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG18619/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18619.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.328 C 0.169 G 0.168 T 0.335 Background letter frequencies (from file dataset with add-one prior applied): A 0.328 C 0.169 G 0.168 T 0.335 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCDBTGSS MEME-1 width = 8 sites = 42 llr = 346 E-value = 3.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCDBTGSS MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C :a141:46 probability G a:24:a44 matrix T ::328:2: bits 2.6 ** * 2.3 ** * 2.1 ** * 1.8 ** * Relative 1.5 ** * * Entropy 1.3 ** * * (11.9 bits) 1.0 ** ** * 0.8 ** ***** 0.5 ** ***** 0.3 ** ***** 0.0 -------- Multilevel GCACTGCC consensus TG GG sequence GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDBTGSS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:13236740-13236860 105 1.28e-05 GGGGCTGGGG GCGGTGGC GGGGGGCC chr3R:21161846-21161966 11 1.28e-05 CATTTTGTTG GCACTGCC TTGCGTTGTG chr3L:224359-224479 4 1.28e-05 GAG GCGCTGGC AGCGACCTAC chr3L:11286682-11286802 101 1.28e-05 ATGGGATTAA GCACTGCC ATTGTATTGC chr2L:5045209-5045329 37 1.79e-05 AACCATTAGC GCTGTGCC GTAGTTATTT chr2L:161417-161537 45 3.31e-05 AAATCGCGTA GCACTGCG AACCCAAGTT chr3R:28590654-28590774 15 3.31e-05 CCGACTTATC GCAGTGGC GTTGTGATTT chrX:15384047-15384167 12 3.31e-05 AGCTGAACGT GCACTGCG AGAAATTAGC chr2L:4403151-4403271 1 3.31e-05 . GCACTGCG TTTTATTGGG chrX:5970349-5970469 31 3.31e-05 GCGGACATGG GCGCTGGG GAAGGGAGTC chr3L:15592783-15592903 82 4.33e-05 CTTGACCACC GCTGTGCG TGTGTGTAAA chr2L:5876583-5876703 55 5.35e-05 CTCACAGGTT GCCGTGCG CAAACAAACA chr3R:30802295-30802415 113 5.35e-05 ACAGAGATCG GCCCTGGC chr3R:18311107-18311227 26 5.35e-05 CCGTTTGACG GCACTGGG GAaaataatt chrX:6614427-6614547 70 5.86e-05 GTATCTTTTC GCTGTGGG CGTAAACACA chr2L:5981453-5981573 70 5.86e-05 AGGCACCCCA GCTCTGGG TCTGCAGCCC chr3L:3437138-3437258 12 6.25e-05 TGTTGCTGTT GCGCCGCC TGTTTATTTT chr3R:21373533-21373653 35 6.50e-05 AATTTGCACG GCGTTGCC ACACAGCCGA chr2R:17514138-17514258 7 6.50e-05 TTAAAA GCGTTGCC AGATGCGGAT chr2L:18136693-18136813 20 7.02e-05 CACGACAAAA GCGGCGGC AAATATTCGT chr2L:13414969-13415089 96 8.29e-05 TCTCGCAACA GCATTGCC AACATGAACG chr2R:18834922-18835042 60 9.57e-05 ACACTGCACA GCAGCGGC TTACTTTCAT chr2L:1362355-1362475 93 9.57e-05 TCTGTTGAGC GCTTTGCC GGCGTTGCTC chr2R:16096995-16097115 78 9.57e-05 AGTTTTTATT GCTTTGCC AACAATTGTA chr2R:21323645-21323765 4 9.57e-05 TCT GCCGCGCC GAAAATTGAC chr2R:13015241-13015361 28 9.57e-05 ACTCATAATC GCTTTGCC ATCATAGTTG chr2R:20316176-20316296 101 1.21e-04 CGCCACTGTC GCGTTGGG GATGCCCTGC chr3R:14723689-14723809 68 1.21e-04 CGTTTCTTTT GCTCCGGC GATAATGGAG chr2L:3779288-3779408 96 1.21e-04 ATATTCCTGT GCCTTGCC AAACCAAGAT chrX:2087652-2087772 80 1.36e-04 TAGGTCCGCG GCAGCGGG TGCTATTATC chr2L:6874730-6874850 98 1.36e-04 AAATCCGGGA GCTTTGGC TATCAATCTG chrX:19663359-19663479 85 1.64e-04 GAATGACGTG GCATTGGG TTCAATGGGA chr2L:5043959-5044079 25 1.64e-04 ATTTGCACTC GCACTGTC TGCATGTTTT chr3R:23803797-23803917 80 1.64e-04 GTGACAGTGT GCAGTGTC AGTGAAAGTG chr2R:18397663-18397783 38 1.81e-04 CTATCTATTA GCTGTGTC AATATTTGAT chr2R:14645060-14645180 82 1.98e-04 GCACACAGGC GCACTGTG GCGTTTTAGC chrX:9590025-9590145 48 2.08e-04 TATTTGCTCA GCTGTGTG TGTTTTTGTT chr3R:20834997-20835117 111 2.08e-04 TGTTGTTGCT GCTGTGTG GA chr2R:11427842-11427962 35 2.16e-04 CAAATATTGA GCCCTGTG TTTAAACACT chr2R:7031135-7031255 109 2.16e-04 TCAACAGGTT GCCGTGTG CAAA chr2R:16610077-16610197 70 2.32e-04 GAATTTATTA GCTCGGCC TAAAAGTAGG chr2L:16869200-16869320 97 2.49e-04 CTGAGTGCAT GCGGGGGG CGAGAGAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDBTGSS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:13236740-13236860 1.3e-05 104_[+1]_8 chr3R:21161846-21161966 1.3e-05 10_[+1]_102 chr3L:224359-224479 1.3e-05 3_[+1]_109 chr3L:11286682-11286802 1.3e-05 100_[+1]_12 chr2L:5045209-5045329 1.8e-05 36_[+1]_76 chr2L:161417-161537 3.3e-05 44_[+1]_68 chr3R:28590654-28590774 3.3e-05 14_[+1]_98 chrX:15384047-15384167 3.3e-05 11_[+1]_101 chr2L:4403151-4403271 3.3e-05 [+1]_112 chrX:5970349-5970469 3.3e-05 30_[+1]_82 chr3L:15592783-15592903 4.3e-05 81_[+1]_31 chr2L:5876583-5876703 5.3e-05 54_[+1]_58 chr3R:30802295-30802415 5.3e-05 112_[+1] chr3R:18311107-18311227 5.3e-05 25_[+1]_87 chrX:6614427-6614547 5.9e-05 69_[+1]_43 chr2L:5981453-5981573 5.9e-05 69_[+1]_43 chr3L:3437138-3437258 6.2e-05 11_[+1]_101 chr3R:21373533-21373653 6.5e-05 34_[+1]_78 chr2R:17514138-17514258 6.5e-05 6_[+1]_106 chr2L:18136693-18136813 7e-05 19_[+1]_93 chr2L:13414969-13415089 8.3e-05 95_[+1]_17 chr2R:18834922-18835042 9.6e-05 59_[+1]_53 chr2L:1362355-1362475 9.6e-05 92_[+1]_20 chr2R:16096995-16097115 9.6e-05 77_[+1]_35 chr2R:21323645-21323765 9.6e-05 3_[+1]_109 chr2R:13015241-13015361 9.6e-05 27_[+1]_85 chr2R:20316176-20316296 0.00012 100_[+1]_12 chr3R:14723689-14723809 0.00012 67_[+1]_45 chr2L:3779288-3779408 0.00012 95_[+1]_17 chrX:2087652-2087772 0.00014 79_[+1]_33 chr2L:6874730-6874850 0.00014 97_[+1]_15 chrX:19663359-19663479 0.00016 84_[+1]_28 chr2L:5043959-5044079 0.00016 24_[+1]_88 chr3R:23803797-23803917 0.00016 79_[+1]_33 chr2R:18397663-18397783 0.00018 37_[+1]_75 chr2R:14645060-14645180 0.0002 81_[+1]_31 chrX:9590025-9590145 0.00021 47_[+1]_65 chr3R:20834997-20835117 0.00021 110_[+1]_2 chr2R:11427842-11427962 0.00022 34_[+1]_78 chr2R:7031135-7031255 0.00022 108_[+1]_4 chr2R:16610077-16610197 0.00023 69_[+1]_43 chr2L:16869200-16869320 0.00025 96_[+1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDBTGSS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCDBTGSS width=8 seqs=42 chr3L:13236740-13236860 ( 105) GCGGTGGC 1 chr3R:21161846-21161966 ( 11) GCACTGCC 1 chr3L:224359-224479 ( 4) GCGCTGGC 1 chr3L:11286682-11286802 ( 101) GCACTGCC 1 chr2L:5045209-5045329 ( 37) GCTGTGCC 1 chr2L:161417-161537 ( 45) GCACTGCG 1 chr3R:28590654-28590774 ( 15) GCAGTGGC 1 chrX:15384047-15384167 ( 12) GCACTGCG 1 chr2L:4403151-4403271 ( 1) GCACTGCG 1 chrX:5970349-5970469 ( 31) GCGCTGGG 1 chr3L:15592783-15592903 ( 82) GCTGTGCG 1 chr2L:5876583-5876703 ( 55) GCCGTGCG 1 chr3R:30802295-30802415 ( 113) GCCCTGGC 1 chr3R:18311107-18311227 ( 26) GCACTGGG 1 chrX:6614427-6614547 ( 70) GCTGTGGG 1 chr2L:5981453-5981573 ( 70) GCTCTGGG 1 chr3L:3437138-3437258 ( 12) GCGCCGCC 1 chr3R:21373533-21373653 ( 35) GCGTTGCC 1 chr2R:17514138-17514258 ( 7) GCGTTGCC 1 chr2L:18136693-18136813 ( 20) GCGGCGGC 1 chr2L:13414969-13415089 ( 96) GCATTGCC 1 chr2R:18834922-18835042 ( 60) GCAGCGGC 1 chr2L:1362355-1362475 ( 93) GCTTTGCC 1 chr2R:16096995-16097115 ( 78) GCTTTGCC 1 chr2R:21323645-21323765 ( 4) GCCGCGCC 1 chr2R:13015241-13015361 ( 28) GCTTTGCC 1 chr2R:20316176-20316296 ( 101) GCGTTGGG 1 chr3R:14723689-14723809 ( 68) GCTCCGGC 1 chr2L:3779288-3779408 ( 96) GCCTTGCC 1 chrX:2087652-2087772 ( 80) GCAGCGGG 1 chr2L:6874730-6874850 ( 98) GCTTTGGC 1 chrX:19663359-19663479 ( 85) GCATTGGG 1 chr2L:5043959-5044079 ( 25) GCACTGTC 1 chr3R:23803797-23803917 ( 80) GCAGTGTC 1 chr2R:18397663-18397783 ( 38) GCTGTGTC 1 chr2R:14645060-14645180 ( 82) GCACTGTG 1 chrX:9590025-9590145 ( 48) GCTGTGTG 1 chr3R:20834997-20835117 ( 111) GCTGTGTG 1 chr2R:11427842-11427962 ( 35) GCCCTGTG 1 chr2R:7031135-7031255 ( 109) GCCGTGTG 1 chr2R:16610077-16610197 ( 70) GCTCGGCC 1 chr2L:16869200-16869320 ( 97) GCGGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDBTGSS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 3.7e+001 -1204 -1204 257 -1204 -1204 257 -1204 -1204 2 -24 35 -11 -1204 117 118 -49 -1204 -24 -182 127 -1204 -1204 257 -1204 -1204 134 118 -81 -1204 176 135 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDBTGSS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 3.7e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.142857 0.214286 0.309524 0.000000 0.380952 0.380952 0.238095 0.000000 0.142857 0.047619 0.809524 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.380952 0.190476 0.000000 0.571429 0.428571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCDBTGSS MEME-1 regular expression -------------------------------------------------------------------------------- GC[ATG][CGT]TG[CG][CG] -------------------------------------------------------------------------------- Time 7.62 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCGCCAA MEME-2 width = 8 sites = 13 llr = 131 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCGCCAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::98 pos.-specific C 6:828a1: probability G 3a282::2 matrix T 1::::::: bits 2.6 * * 2.3 * * 2.1 ***** 1.8 ***** Relative 1.5 ***** Entropy 1.3 ******* (14.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCGCCAA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCCAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30802295-30802415 83 2.48e-06 CTCGGCCCCA CGCGCCAA ATCCGAGTGT chr3R:23803797-23803917 5 2.48e-06 GGTG CGCGCCAA AAAGTAGTCA chr3R:16215137-16215257 66 2.48e-06 ACTGACTGAG CGCGCCAA AAAGTAGGCA chr3R:24544449-24544569 103 6.21e-06 GTTCTATTTT GGCGCCAA AAATAGCTGA chr3R:5470832-5470952 49 7.47e-06 GTAGCTAAAA GGCGCCAG TACTAAATTG chr2L:161417-161537 74 1.49e-05 GGATGAGCAG CGCGGCAA CAGCGACGTC chr3L:13356201-13356321 18 1.49e-05 atCTTTGTTA CGGGCCAA GTGCTAGAAT chr2L:7957290-7957410 82 1.62e-05 TTTCAGTCTG CGCGCCCA GTGTCAGTGG chrX:2087652-2087772 100 2.00e-05 CTATTATCTT CGCCCCAG Ctgtgtgtgt chr3R:19858415-19858535 65 2.00e-05 GGCTTTTTGG CGCGGCAG ACAAAGCCAA chrX:7001154-7001274 35 2.80e-05 TGATTGCCTG GGCCCCAA GATTTTGACT chr3L:14545540-14545660 39 2.80e-05 TGTAAAATGT GGGGCCAA ATGGGTGACG chr2R:14136942-14137062 76 3.42e-05 AAAGCTTACA TGCGCCAA TTGTATCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCCAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30802295-30802415 2.5e-06 82_[+2]_30 chr3R:23803797-23803917 2.5e-06 4_[+2]_108 chr3R:16215137-16215257 2.5e-06 65_[+2]_47 chr3R:24544449-24544569 6.2e-06 102_[+2]_10 chr3R:5470832-5470952 7.5e-06 48_[+2]_64 chr2L:161417-161537 1.5e-05 73_[+2]_39 chr3L:13356201-13356321 1.5e-05 17_[+2]_95 chr2L:7957290-7957410 1.6e-05 81_[+2]_31 chrX:2087652-2087772 2e-05 99_[+2]_13 chr3R:19858415-19858535 2e-05 64_[+2]_48 chrX:7001154-7001274 2.8e-05 34_[+2]_78 chr3L:14545540-14545660 2.8e-05 38_[+2]_74 chr2R:14136942-14137062 3.4e-05 75_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCCAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCGCCAA width=8 seqs=13 chr3R:30802295-30802415 ( 83) CGCGCCAA 1 chr3R:23803797-23803917 ( 5) CGCGCCAA 1 chr3R:16215137-16215257 ( 66) CGCGCCAA 1 chr3R:24544449-24544569 ( 103) GGCGCCAA 1 chr3R:5470832-5470952 ( 49) GGCGCCAG 1 chr2L:161417-161537 ( 74) CGCGGCAA 1 chr3L:13356201-13356321 ( 18) CGGGCCAA 1 chr2L:7957290-7957410 ( 82) CGCGCCCA 1 chrX:2087652-2087772 ( 100) CGCCCCAG 1 chr3R:19858415-19858535 ( 65) CGCGGCAG 1 chrX:7001154-7001274 ( 35) GGCCCCAA 1 chr3L:14545540-14545660 ( 39) GGGGCCAA 1 chr2R:14136942-14137062 ( 76) TGCGCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCCAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 2.2e+003 -1035 187 87 -212 -1035 -1035 257 -1035 -1035 233 -13 -1035 -1035 -13 233 -1035 -1035 233 -13 -1035 -1035 257 -1035 -1035 149 -113 -1035 -1035 123 -1035 46 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCCAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.2e+003 0.000000 0.615385 0.307692 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 0.846154 0.153846 0.000000 0.000000 0.153846 0.846154 0.000000 0.000000 0.846154 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 0.769231 0.000000 0.230769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGCCAA MEME-2 regular expression -------------------------------------------------------------------------------- [CG]GCGCCA[AG] -------------------------------------------------------------------------------- Time 13.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCARTSG MEME-3 width = 8 sites = 14 llr = 140 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCARTSG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::3a6::: pos.-specific C ::7:::6: probability G aa::424a matrix T :::::8:: bits 2.6 ** * 2.3 ** * 2.1 ** * 1.8 ** * Relative 1.5 **** ** Entropy 1.3 **** ** (14.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCAATCG consensus A GGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARTSG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23225305-23225425 60 2.50e-06 AGTTGTCTGA GGCAGTCG CTTGATGCCT chr2R:6970342-6970462 5 2.50e-06 TTAT GGCAGTCG AAAAATCGGA chr2L:4031554-4031674 64 4.99e-06 TGGTTTCAGT GGCAGTGG AAAGACCAAA chr2L:6830327-6830447 79 9.87e-06 GAGACTATAA GGCAATCG TTCCAATATA chr3L:3437138-3437258 51 9.87e-06 AAATATATAA GGCAATCG TACACAGAAA chr2R:16610077-16610197 86 9.87e-06 CCTAAAAGTA GGCAATCG ATTGGTTTTC chr3R:16241916-16242036 103 1.60e-05 AAATATTTTT GGCAATGG CTAAGAATAA chr3R:16222115-16222235 28 2.21e-05 CAATGGGGGA GGCAAGGG GCCTTGATCA chr3L:13236740-13236860 90 2.21e-05 GCAAACAAAT GGCAAGGG GCTGGGGGCG chrX:13404058-13404178 39 2.21e-05 GTTTAATAGC GGCAAGGG AAGCTATATG chr2L:10522541-10522661 9 2.70e-05 GGTATTCC GGAAGTCG AAAGGGTAGA chr3L:17016146-17016266 75 2.70e-05 GTTGTAAGGT GGAAGTCG AAATGTGTAT chr3R:21373533-21373653 86 3.18e-05 TAGGGTTTCC GGAAGTGG CAACACCGTC chr3L:20185492-20185612 20 4.12e-05 GAAAATCAAA GGAAATCG GATTTTGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARTSG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23225305-23225425 2.5e-06 59_[+3]_53 chr2R:6970342-6970462 2.5e-06 4_[+3]_108 chr2L:4031554-4031674 5e-06 63_[+3]_49 chr2L:6830327-6830447 9.9e-06 78_[+3]_34 chr3L:3437138-3437258 9.9e-06 50_[+3]_62 chr2R:16610077-16610197 9.9e-06 85_[+3]_27 chr3R:16241916-16242036 1.6e-05 102_[+3]_10 chr3R:16222115-16222235 2.2e-05 27_[+3]_85 chr3L:13236740-13236860 2.2e-05 89_[+3]_23 chrX:13404058-13404178 2.2e-05 38_[+3]_74 chr2L:10522541-10522661 2.7e-05 8_[+3]_104 chr3L:17016146-17016266 2.7e-05 74_[+3]_38 chr3R:21373533-21373653 3.2e-05 85_[+3]_27 chr3L:20185492-20185612 4.1e-05 19_[+3]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARTSG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCARTSG width=8 seqs=14 chr3R:23225305-23225425 ( 60) GGCAGTCG 1 chr2R:6970342-6970462 ( 5) GGCAGTCG 1 chr2L:4031554-4031674 ( 64) GGCAGTGG 1 chr2L:6830327-6830447 ( 79) GGCAATCG 1 chr3L:3437138-3437258 ( 51) GGCAATCG 1 chr2R:16610077-16610197 ( 86) GGCAATCG 1 chr3R:16241916-16242036 ( 103) GGCAATGG 1 chr3R:16222115-16222235 ( 28) GGCAAGGG 1 chr3L:13236740-13236860 ( 90) GGCAAGGG 1 chrX:13404058-13404178 ( 39) GGCAAGGG 1 chr2L:10522541-10522661 ( 9) GGAAGTCG 1 chr3L:17016146-17016266 ( 75) GGAAGTCG 1 chr3R:21373533-21373653 ( 86) GGAAGTGG 1 chr3L:20185492-20185612 ( 20) GGAAATCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARTSG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 1.9e+004 -1045 -1045 257 -1045 -1045 -1045 257 -1045 -20 208 -1045 -1045 161 -1045 -1045 -1045 80 -1045 135 -1045 -1045 -1045 35 123 -1045 176 135 -1045 -1045 -1045 257 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARTSG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.000000 0.000000 0.214286 0.785714 0.000000 0.571429 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARTSG MEME-3 regular expression -------------------------------------------------------------------------------- GG[CA]A[AG][TG][CG]G -------------------------------------------------------------------------------- Time 20.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGGCC MEME-4 width = 8 sites = 4 llr = 50 E-value = 6.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::3:88 probability G aaaa8a3: matrix T :::::::3 bits 2.6 **** * 2.3 **** * 2.1 **** * 1.8 ******* Relative 1.5 ******** Entropy 1.3 ******** (17.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGGGCC consensus C GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:13236740-13236860 113 6.42e-07 GGGCGGTGGC GGGGGGCC chr3L:699527-699647 111 1.93e-06 TGCTCCGCAA GGGGCGCC GC chrX:21375740-21375860 9 1.93e-06 GGGTTTGT GGGGGGGC AAAAAACACA chr3L:9125982-9126102 108 3.20e-06 CCTATTTTTT GGGGGGCT TCTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:13236740-13236860 6.4e-07 112_[+4] chr3L:699527-699647 1.9e-06 110_[+4]_2 chrX:21375740-21375860 1.9e-06 8_[+4]_104 chr3L:9125982-9126102 3.2e-06 107_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGGCC width=8 seqs=4 chr3L:13236740-13236860 ( 113) GGGGGGCC 1 chr3L:699527-699647 ( 111) GGGGCGCC 1 chrX:21375740-21375860 ( 9) GGGGGGGC 1 chr3L:9125982-9126102 ( 108) GGGGGGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 6.1e+003 -865 -865 257 -865 -865 -865 257 -865 -865 -865 257 -865 -865 -865 257 -865 -865 57 216 -865 -865 -865 257 -865 -865 215 57 -865 -865 215 -865 -42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 6.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.750000 0.000000 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGCC MEME-4 regular expression -------------------------------------------------------------------------------- GGGG[GC]G[CG][CT] -------------------------------------------------------------------------------- Time 26.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCAAAGC MEME-5 width = 8 sites = 4 llr = 49 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCAAAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::aaa:: pos.-specific C :aa::::a probability G a:::::a: matrix T :::::::: bits 2.6 *** ** 2.3 *** ** 2.1 *** ** 1.8 *** ** Relative 1.5 ******** Entropy 1.3 ******** (17.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCAAAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAAAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18326582-18326702 60 4.81e-06 ATTTTTCTTA GCCAAAGC CATTAAGAGC chr3R:19858415-19858535 78 4.81e-06 GGCAGACAAA GCCAAAGC AAACAGCAGT chr3R:28590654-28590774 48 4.81e-06 GTGTCGAAAC GCCAAAGC AAATATGATT chr3R:30198935-30199055 37 4.81e-06 CATGAGTAAT GCCAAAGC AAACAACCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAAAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18326582-18326702 4.8e-06 59_[+5]_53 chr3R:19858415-19858535 4.8e-06 77_[+5]_35 chr3R:28590654-28590774 4.8e-06 47_[+5]_65 chr3R:30198935-30199055 4.8e-06 36_[+5]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAAAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCAAAGC width=8 seqs=4 chr2R:18326582-18326702 ( 60) GCCAAAGC 1 chr3R:19858415-19858535 ( 78) GCCAAAGC 1 chr3R:28590654-28590774 ( 48) GCCAAAGC 1 chr3R:30198935-30199055 ( 37) GCCAAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAAAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 2.7e+004 -865 -865 257 -865 -865 256 -865 -865 -865 256 -865 -865 160 -865 -865 -865 160 -865 -865 -865 160 -865 -865 -865 -865 -865 257 -865 -865 256 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAAAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.7e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCAAAGC MEME-5 regular expression -------------------------------------------------------------------------------- GCCAAAGC -------------------------------------------------------------------------------- Time 33.11 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16215137-16215257 6.26e-04 65_[+2(2.48e-06)]_47 chr3R:18311107-18311227 1.31e-02 25_[+1(5.35e-05)]_87 chr2L:6089004-6089124 3.00e-01 120 chr3R:23803797-23803917 6.35e-06 4_[+2(2.48e-06)]_108 chr3L:12803819-12803939 9.95e-01 120 chr3L:4000836-4000956 8.55e-01 120 chr3R:21188243-21188363 4.69e-01 120 chr2L:14376997-14377117 6.12e-01 120 chr3R:21187016-21187136 3.60e-01 120 chr2R:15155050-15155170 8.62e-01 120 chr3L:10827475-10827595 1.00e+00 120 chrX:18900095-18900215 9.94e-01 120 chr2L:7957072-7957192 2.76e-01 120 chr2R:14136942-14137062 1.39e-01 75_[+2(3.42e-05)]_37 chr3R:5861564-5861684 2.72e-01 120 chr2L:3477432-3477552 7.71e-02 120 chr3L:9125982-9126102 2.17e-04 107_[+4(3.20e-06)]_5 chr2L:16869200-16869320 4.77e-04 98_[+4(1.46e-05)]_14 chrX:2591637-2591757 1.27e-01 120 chr3R:16241916-16242036 2.03e-02 102_[+3(1.60e-05)]_10 chr2R:10123665-10123785 8.56e-01 120 chr2R:13015241-13015361 1.51e-01 27_[+1(9.57e-05)]_85 chrX:15297044-15297164 2.90e-01 120 chr2R:11192584-11192704 9.24e-01 120 chr3L:22471745-22471865 4.30e-01 120 chr3L:8692239-8692359 1.00e+00 120 chr3R:14875698-14875818 9.49e-01 120 chr3R:26104291-26104411 6.20e-01 120 chr2R:11601925-11602045 6.88e-01 120 chr3L:13356201-13356321 6.70e-03 17_[+2(1.49e-05)]_95 chr2L:11199203-11199323 7.44e-01 120 chr3R:6791147-6791267 5.36e-01 120 chr3R:19165091-19165211 7.85e-01 120 chr3L:11286682-11286802 1.42e-03 100_[+1(1.28e-05)]_12 chr2R:7054246-7054366 5.43e-01 120 chrX:10487997-10488117 4.08e-01 120 chr3R:25027610-25027730 4.58e-01 120 chr3R:25123355-25123475 2.26e-01 120 chr3L:3449803-3449923 5.80e-01 120 chr3R:15139696-15139816 2.50e-01 120 chr3R:27988787-27988907 7.78e-01 120 chr2L:6874730-6874850 3.33e-02 120 chr2L:19019352-19019472 4.54e-01 120 chr2R:13008240-13008360 6.03e-02 120 chr3L:224359-224479 7.07e-04 3_[+1(1.28e-05)]_109 chrX:5970349-5970469 9.39e-04 30_[+1(3.31e-05)]_82 chrX:14583407-14583527 9.35e-01 120 chr2R:21323645-21323765 5.75e-04 3_[+1(9.57e-05)]_109 chr3L:15592783-15592903 2.28e-02 81_[+1(4.33e-05)]_31 chr3L:14613950-14614070 5.38e-01 120 chr2R:20327048-20327168 5.83e-01 120 chr2R:12174468-12174588 3.31e-01 120 chrX:10629052-10629172 9.46e-01 120 chr3L:9066126-9066246 2.62e-01 120 chr2L:3779288-3779408 4.35e-02 120 chr3L:16060977-16061097 9.48e-01 120 chr3R:15139460-15139580 9.65e-01 120 chrX:7901536-7901656 8.02e-01 120 chr2L:2872705-2872825 6.00e-01 120 chr3R:24010989-24011109 4.71e-01 120 chr3R:30198935-30199055 8.71e-03 36_[+5(4.81e-06)]_76 chr2R:14906620-14906740 2.58e-02 120 chr3L:11556823-11556943 6.13e-01 120 chrX:13404058-13404178 1.99e-03 38_[+3(2.21e-05)]_74 chr2R:8002313-8002433 9.85e-01 120 chr3R:28327336-28327456 8.17e-01 120 chrX:13307406-13307526 4.64e-01 120 chr3R:18167586-18167706 1.62e-01 120 chr3L:15034400-15034520 9.01e-01 120 chr2R:16610077-16610197 1.57e-03 85_[+3(9.87e-06)]_27 chr3L:5365288-5365408 4.19e-01 120 chr3L:8763298-8763418 2.22e-01 120 chr2R:21549123-21549243 1.26e-03 60_[+2(4.11e-05)]_52 chr3R:24544449-24544569 4.39e-03 102_[+2(6.21e-06)]_10 chr3L:11278865-11278985 9.39e-01 120 chr3R:30802295-30802415 1.54e-06 82_[+2(2.48e-06)]_22_[+1(5.35e-05)] chr2R:16096995-16097115 3.59e-01 77_[+1(9.57e-05)]_35 chrX:19225143-19225263 1.00e+00 120 chr2R:15754444-15754564 6.79e-01 120 chr3R:27153599-27153719 9.97e-01 120 chr3R:17526197-17526317 8.05e-01 120 chr2L:7871952-7872072 9.82e-01 120 chr2R:18397663-18397783 4.12e-02 120 chr3R:16212950-16213070 2.06e-01 120 chr2R:17161009-17161129 9.11e-01 120 chrX:8542105-8542225 7.57e-01 120 chr2L:4031554-4031674 3.00e-03 63_[+3(4.99e-06)]_49 chr2R:7241715-7241835 7.98e-01 120 chr2L:8461973-8462093 8.29e-01 120 chr2L:1362355-1362475 9.76e-05 48_[+4(7.11e-05)]_36_[+1(9.57e-05)]_\ 20 chr3L:14172641-14172761 3.59e-01 120 chr3L:15094910-15095030 9.94e-01 120 chrX:18404943-18405063 6.16e-01 120 chr3R:14723689-14723809 7.22e-03 9_[+4(8.11e-05)]_103 chr3R:24318548-24318668 8.85e-03 120 chr2L:14021258-14021378 9.69e-01 120 chr3R:29068868-29068988 7.26e-02 120 chr3R:15128991-15129111 9.49e-01 120 chrX:17738009-17738129 1.13e-01 120 chr3L:3770952-3771072 4.09e-01 120 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chr3L:15921303-15921423 9.98e-01 120 chr2R:12772788-12772908 8.45e-01 120 chrX:2087652-2087772 9.00e-06 75_[+2(2.00e-05)]_16_[+2(2.00e-05)]_\ 13 chr3L:17016146-17016266 2.51e-01 74_[+3(2.70e-05)]_38 chrX:16834370-16834490 9.70e-01 120 chr3R:8867933-8868053 1.91e-01 120 chr3L:13479878-13479998 5.43e-01 120 chrX:13391287-13391407 5.30e-02 120 chr3L:10852096-10852216 1.00e+00 120 chr2R:11275733-11275853 9.05e-01 120 chr2L:5043959-5044079 2.09e-01 120 chr3L:7861228-7861348 9.57e-01 120 chr3R:16210037-16210157 8.27e-01 120 chr3L:14545540-14545660 2.06e-04 38_[+2(2.80e-05)]_74 chrX:14215216-14215336 4.31e-01 120 chr3R:25281297-25281417 7.22e-03 120 chr3R:5015320-5015440 2.10e-01 120 chr3R:20834997-20835117 2.35e-01 120 chr2L:5798123-5798243 4.74e-01 120 chr2R:11427842-11427962 1.28e-01 120 chr3R:21339072-21339192 6.90e-01 120 chr2L:16547813-16547933 9.98e-01 120 chr2L:6830327-6830447 1.51e-03 78_[+3(9.87e-06)]_34 chr3R:16213150-16213270 7.20e-01 120 chrX:21045040-21045160 9.92e-01 120 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chr3L:699527-699647 9.91e-05 110_[+4(1.93e-06)]_2 chr2R:18326582-18326702 3.88e-02 59_[+5(4.81e-06)]_53 chrX:9590025-9590145 5.70e-01 120 chr3L:18786822-18786942 1.00e+00 120 chr2R:8670941-8671061 4.78e-02 120 chr3L:11403678-11403798 2.99e-01 120 chr2L:11528361-11528481 9.97e-01 120 chr2R:9881455-9881575 3.31e-01 120 chr2L:161417-161537 8.12e-05 44_[+1(3.31e-05)]_21_[+2(1.49e-05)]_\ 39 chr3L:12277486-12277606 7.54e-01 120 chr3R:27152447-27152567 6.63e-01 120 chr2R:13585457-13585577 5.58e-01 120 chr3R:14670957-14671077 5.09e-02 120 chr3L:14762400-14762520 4.18e-01 120 chr2R:7254449-7254569 6.86e-01 120 chr3R:10388866-10388986 2.32e-01 120 chr3R:23225305-23225425 3.69e-03 59_[+3(2.50e-06)]_53 chr2L:10522541-10522661 2.16e-01 8_[+3(2.70e-05)]_104 chrX:7001154-7001274 4.87e-03 34_[+2(2.80e-05)]_78 chrX:17713569-17713689 9.64e-01 120 chr3L:15704345-15704465 9.99e-01 120 chrX:6316969-6317089 8.08e-01 120 chr3R:5470832-5470952 2.12e-03 48_[+2(7.47e-06)]_64 chr3L:8063526-8063646 1.88e-01 120 chr2R:21507951-21508071 7.02e-01 120 chr2L:2176029-2176149 7.00e-01 120 chr3R:6468109-6468229 9.52e-01 120 chr3R:16209134-16209254 1.00e+00 120 chr3L:20185492-20185612 2.63e-01 19_[+3(4.12e-05)]_93 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************