******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18476.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:5968834-5968954 1.0000 120 chr3R:6881393-6881513 1.0000 120 chr3R:9870924-9871044 1.0000 120 chr2R:24544485-24544605 1.0000 120 chr2R:11404507-11404627 1.0000 120 chr2L:7262702-7262822 1.0000 120 chr3R:11669160-11669280 1.0000 120 chr3L:19017499-19017619 1.0000 120 chrX:3837827-3837947 1.0000 120 chr2L:21026741-21026861 1.0000 120 chr2L:18924984-18925104 1.0000 120 chr2L:4252910-4253030 1.0000 120 chrX:5995574-5995694 1.0000 120 chr3R:10068936-10069056 1.0000 120 chr3L:14300874-14300994 1.0000 120 chr3L:1922208-1922328 1.0000 120 chr2L:19836427-19836547 1.0000 120 chr3L:22393126-22393246 1.0000 120 chr2R:22933661-22933781 1.0000 120 chr3L:12066863-12066983 1.0000 120 chrX:11855206-11855326 1.0000 120 chr3R:26000836-26000956 1.0000 120 chr3R:8304009-8304129 1.0000 120 chr3L:17764330-17764450 1.0000 120 chr2R:14591802-14591922 1.0000 120 chr3R:26443463-26443583 1.0000 120 chr3R:14687187-14687307 1.0000 120 chr2R:16802459-16802579 1.0000 120 chr3R:10056813-10056933 1.0000 120 chr3L:18233089-18233209 1.0000 120 chr2R:6591144-6591264 1.0000 120 chr2L:5432331-5432451 1.0000 120 chr2R:8648033-8648153 1.0000 120 chr3L:17992835-17992955 1.0000 120 chr2L:2861893-2862013 1.0000 120 chr3L:8033857-8033977 1.0000 120 chr3L:726758-726878 1.0000 120 chr2R:18263594-18263714 1.0000 120 chr3R:10354361-10354481 1.0000 120 chrX:18452861-18452981 1.0000 120 chr3L:15325595-15325715 1.0000 120 chr3L:441763-441883 1.0000 120 chr3L:14989596-14989716 1.0000 120 chrX:12939140-12939260 1.0000 120 chr3R:29574876-29574996 1.0000 120 chr3R:4980385-4980505 1.0000 120 chr2L:3059477-3059597 1.0000 120 chr2L:1449792-1449912 1.0000 120 chr2L:12492889-12493009 1.0000 120 chrX:20666038-20666158 1.0000 120 chr3R:11869881-11870001 1.0000 120 chr2L:10754890-10755010 1.0000 120 chr3L:22192267-22192387 1.0000 120 chr2R:11444173-11444293 1.0000 120 chr2L:12446313-12446433 1.0000 120 chr2L:12066138-12066258 1.0000 120 chr3L:14456421-14456541 1.0000 120 chr3L:15546073-15546193 1.0000 120 chr2L:874236-874356 1.0000 120 chr3L:441962-442082 1.0000 120 chr3L:22795725-22795845 1.0000 120 chr3R:6908238-6908358 1.0000 120 chrX:14650800-14650920 1.0000 120 chr3L:6082630-6082750 1.0000 120 chr3L:311754-311874 1.0000 120 chr3R:13735247-13735367 1.0000 120 chr2R:20831604-20831724 1.0000 120 chr3R:13260175-13260295 1.0000 120 chr3R:15667011-15667131 1.0000 120 chr3R:27205194-27205314 1.0000 120 chr2L:5093086-5093206 1.0000 120 chr2R:23569481-23569601 1.0000 120 chr3R:28547140-28547260 1.0000 120 chr2R:20977173-20977293 1.0000 120 chr3L:6561184-6561304 1.0000 120 chr3R:19786221-19786341 1.0000 120 chrX:2167540-2167660 1.0000 120 chr2R:23621705-23621825 1.0000 120 chr2L:7265122-7265242 1.0000 120 chr3R:9258375-9258495 1.0000 120 chrX:15383819-15383939 1.0000 120 chr3R:12381427-12381547 1.0000 120 chr3R:22751903-22752023 1.0000 120 chr2L:4699003-4699123 1.0000 120 chr3L:2474393-2474513 1.0000 120 chr3L:1930263-1930383 1.0000 120 chr3L:21281536-21281656 1.0000 120 chr2R:20163817-20163937 1.0000 120 chrX:9993551-9993671 1.0000 120 chr2L:11415879-11415999 1.0000 120 chrX:5983508-5983628 1.0000 120 chr2R:23187368-23187488 1.0000 120 chr3L:2540384-2540504 1.0000 120 chr3L:21055850-21055970 1.0000 120 chr2L:13928581-13928701 1.0000 120 chr3L:18272407-18272527 1.0000 120 chrX:8734489-8734609 1.0000 120 chr2R:14592005-14592125 1.0000 120 chr2L:12822559-12822679 1.0000 120 chr2R:9140007-9140127 1.0000 120 chr2L:19903005-19903125 1.0000 120 chr3L:15755109-15755229 1.0000 120 chr2L:6171287-6171407 1.0000 120 chr3L:4614041-4614161 1.0000 120 chr3R:14755532-14755652 1.0000 120 chr2L:19139014-19139134 1.0000 120 chr2L:18628864-18628984 1.0000 120 chr2R:23552357-23552477 1.0000 120 chr2L:19303030-19303150 1.0000 120 chr2R:9281679-9281799 1.0000 120 chr2R:19629587-19629707 1.0000 120 chr2L:11823565-11823685 1.0000 120 chr3R:23332194-23332314 1.0000 120 chr3R:14369673-14369793 1.0000 120 chr3L:13182522-13182642 1.0000 120 chr2L:20823068-20823188 1.0000 120 chr3R:30103156-30103276 1.0000 120 chr2R:8279623-8279743 1.0000 120 chr2R:22725818-22725938 1.0000 120 chrX:19295100-19295220 1.0000 120 chr3R:16557580-16557700 1.0000 120 chr3R:22527345-22527465 1.0000 120 chr3R:23869112-23869232 1.0000 120 chrX:3731064-3731184 1.0000 120 chr2L:6704621-6704741 1.0000 120 chr2R:17194204-17194324 1.0000 120 chr2R:10673140-10673260 1.0000 120 chr3R:31597705-31597825 1.0000 120 chr3L:10526726-10526846 1.0000 120 chr2R:18305534-18305654 1.0000 120 chr3L:18348188-18348308 1.0000 120 chr2R:12006361-12006481 1.0000 120 chr3L:10803594-10803714 1.0000 120 chr3R:28888224-28888344 1.0000 120 chr3R:14811939-14812059 1.0000 120 chr3R:11669362-11669482 1.0000 120 chr2L:3124552-3124672 1.0000 120 chr3R:10125761-10125881 1.0000 120 chr2R:20857880-20858000 1.0000 120 chr3L:18267118-18267238 1.0000 120 chr2R:15899990-15900110 1.0000 120 chr3L:153555-153675 1.0000 120 chr3L:18266885-18267005 1.0000 120 chr3R:26956528-26956648 1.0000 120 chr2R:8649325-8649445 1.0000 120 chr3R:21590167-21590287 1.0000 120 chr2R:12992008-12992128 1.0000 120 chr2R:20119547-20119667 1.0000 120 chr3R:31301653-31301773 1.0000 120 chrX:3377404-3377524 1.0000 120 chr2L:4459777-4459897 1.0000 120 chr3R:9025135-9025255 1.0000 120 chr3L:10791788-10791908 1.0000 120 chr2L:14668094-14668214 1.0000 120 chr3L:4976048-4976168 1.0000 120 chr2R:11074152-11074272 1.0000 120 chrX:17264544-17264664 1.0000 120 chr2L:19203736-19203856 1.0000 120 chr3L:12351619-12351739 1.0000 120 chr3L:12789392-12789512 1.0000 120 chrX:3161094-3161214 1.0000 120 chr3L:18854382-18854502 1.0000 120 chr2R:21662465-21662585 1.0000 120 chrX:9931175-9931295 1.0000 120 chrX:22852965-22853085 1.0000 120 chr3R:16321620-16321740 1.0000 120 chr2L:1962035-1962155 1.0000 120 chr2R:12743276-12743396 1.0000 120 chr4:647534-647654 1.0000 120 chr3R:27597422-27597542 1.0000 120 chr3L:10521819-10521939 1.0000 120 chr3R:22464660-22464780 1.0000 120 chr2L:6277870-6277990 1.0000 120 chr3R:25636824-25636944 1.0000 120 chr2R:19792433-19792553 1.0000 120 chrX:13134990-13135110 1.0000 120 chr2R:19297457-19297577 1.0000 120 chr3R:13896726-13896846 1.0000 120 chr3L:9548075-9548195 1.0000 120 chr2L:5063061-5063181 1.0000 120 chr3R:29077695-29077815 1.0000 120 chr3L:6405233-6405353 1.0000 120 chr3R:10605228-10605348 1.0000 120 chr2L:5295185-5295305 1.0000 120 chr2R:15918273-15918393 1.0000 120 chr3R:14332640-14332760 1.0000 120 chrX:19243245-19243365 1.0000 120 chr2R:18290354-18290474 1.0000 120 chr3R:4977511-4977631 1.0000 120 chr2R:11970271-11970391 1.0000 120 chr3L:21433957-21434077 1.0000 120 chr2R:24281006-24281126 1.0000 120 chr3L:18786163-18786283 1.0000 120 chr2R:13028981-13029101 1.0000 120 chr3L:3072175-3072295 1.0000 120 chr3R:25519906-25520026 1.0000 120 chr3L:11716586-11716706 1.0000 120 chr3L:17404880-17405000 1.0000 120 chr2R:19310965-19311085 1.0000 120 chr3L:2411062-2411182 1.0000 120 chr2R:21091905-21092025 1.0000 120 chr3R:24817198-24817318 1.0000 120 chr3L:3932896-3933016 1.0000 120 chr2R:23154696-23154816 1.0000 120 chr3R:24580596-24580716 1.0000 120 chr2R:13996726-13996846 1.0000 120 chrX:4457752-4457872 1.0000 120 chr3R:6849898-6850018 1.0000 120 chr2R:10160486-10160606 1.0000 120 chr2R:16135438-16135558 1.0000 120 chr2R:6668810-6668930 1.0000 120 chr3L:9424635-9424755 1.0000 120 chr3L:8440788-8440908 1.0000 120 chr2L:6472572-6472692 1.0000 120 chr3R:11666010-11666130 1.0000 120 chr3L:13923471-13923591 1.0000 120 chr3R:24318572-24318692 1.0000 120 chr3L:21047140-21047260 1.0000 120 chr3L:14031930-14032050 1.0000 120 chr3R:11673989-11674109 1.0000 120 chr3R:28327373-28327493 1.0000 120 chrX:12724746-12724866 1.0000 120 chr2L:7544575-7544695 1.0000 120 chrX:13783424-13783544 1.0000 120 chrX:5745255-5745375 1.0000 120 chr3L:1794153-1794273 1.0000 120 chr2L:2862094-2862214 1.0000 120 chr2R:16951865-16951985 1.0000 120 chr2R:21202906-21203026 1.0000 120 chrX:10629011-10629131 1.0000 120 chr2L:8415518-8415638 1.0000 120 chr3L:14190159-14190279 1.0000 120 chrX:17510279-17510399 1.0000 120 chr3R:31793784-31793904 1.0000 120 chr2R:21514490-21514610 1.0000 120 chr3L:16657161-16657281 1.0000 120 chr3R:19093350-19093470 1.0000 120 chr3L:6495280-6495400 1.0000 120 chr2L:12721103-12721223 1.0000 120 chrX:7286524-7286644 1.0000 120 chr3R:14095534-14095654 1.0000 120 chr3R:21887647-21887767 1.0000 120 chr3L:11285278-11285398 1.0000 120 chr2L:8239793-8239913 1.0000 120 chr3L:1578625-1578745 1.0000 120 chr3R:5413096-5413216 1.0000 120 chr3L:14335954-14336074 1.0000 120 chr3L:1755580-1755700 1.0000 120 chr3R:21420041-21420161 1.0000 120 chrX:13817563-13817683 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG18476/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18476.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.207 G 0.204 T 0.297 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.207 G 0.204 T 0.297 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGAGGGK MEME-1 width = 8 sites = 87 llr = 800 E-value = 1.2e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 21:a:::: pos.-specific C 19:::::1 probability G 6:a:aa93 matrix T ::::::15 bits 2.3 * ** 2.1 * ** 1.8 ** *** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ****** (13.3 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGAGGGT consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15899990-15900110 40 6.34e-06 CCTAGTCCAT GCGAGGGT TGCTCAAGAA chr2L:6704621-6704741 50 6.34e-06 CCAGTTGGCA GCGAGGGT CGATCGAAGG chr3R:16557580-16557700 7 6.34e-06 AAGCCA GCGAGGGT AGATTCAGCA chr2L:19303030-19303150 23 6.34e-06 CCACGCTGAT GCGAGGGT TGCTTGAGCA chr3L:4614041-4614161 40 6.34e-06 CGTTGAACCA GCGAGGGT CGTGCACACA chr2R:9140007-9140127 48 6.34e-06 CAGATTTGTA GCGAGGGT CGCACCATGG chr3L:6561184-6561304 42 6.34e-06 AGCTTAAAGT GCGAGGGT TGATCCTGAA chr3R:28547140-28547260 42 6.34e-06 CGTGCTGAAA GCGAGGGT CGCTCGTTCA chrX:14650800-14650920 54 6.34e-06 CGCCTCGGTG GCGAGGGT TGGCCCAAGA chr3R:4980385-4980505 46 6.34e-06 GGGCTTCGCT GCGAGGGT AGATACACTC chr3L:8033857-8033977 24 6.34e-06 ATCCACCCAC GCGAGGGT GGAGATGAAA chr2L:5432331-5432451 52 6.34e-06 ATATATTTGT GCGAGGGT CGCTCTTCGC chr3R:10056813-10056933 29 6.34e-06 GGTAAAAGAA GCGAGGGT CGCTTAAGGC chr3L:22393126-22393246 62 6.34e-06 TTTGAGAGTG GCGAGGGT GGATATGTGT chr3L:1922208-1922328 50 6.34e-06 CAGACTCCTC GCGAGGGT AGAACGCAAA chr2L:4252910-4253030 56 6.34e-06 GCATATAATG GCGAGGGT GGATCGAAAA chrX:3837827-3837947 57 6.34e-06 AGTGTGGCAG GCGAGGGT GGATCGATGG chr3L:19017499-19017619 37 6.34e-06 ACGCGATGCT GCGAGGGT TGATTCCAAA chr3R:11669160-11669280 20 6.34e-06 CGGCATAACA GCGAGGGT TGATTCAACG chr2L:7262702-7262822 45 6.34e-06 CACCCAGAAA GCGAGGGT CGCTCGGCCA chr3L:5968834-5968954 27 6.34e-06 TGCTCTTTAT GCGAGGGT TGCGCGAAGA chr3L:21433957-21434077 2 1.07e-05 C GCGAGGGG CGATCTAGAG chr3R:10605228-10605348 32 1.07e-05 GGAGAGTGGT GCGAGGGG AGGCCCTGCA chr2L:19203736-19203856 30 1.07e-05 AAAACGCGTT GCGAGGGG CGTTCGAGGG chr3L:4976048-4976168 40 1.07e-05 GCGGAAAATC GCGAGGGG CGATTGCTGG chr2R:8279623-8279743 73 1.07e-05 gtgtgtgtgt gCGAGGGG CGCTTGTGCG chr2L:13928581-13928701 34 1.07e-05 GGATGGGCAA GCGAGGGG TGCTGCAGTA chr3L:1930263-1930383 26 1.07e-05 AAGAAGTGTA GCGAGGGG AGGTAGGAAA chr2R:23621705-23621825 23 1.07e-05 CAATCGAATA GCGAGGGG CGCTCTAGAA chrX:2167540-2167660 50 1.07e-05 cgtcttGGGT GCGAGGGG CGCTCGAGAG chr2L:5093086-5093206 26 1.07e-05 GATGGATGGA GCGAGGGG AGATTCGGAA chr3L:22192267-22192387 39 1.07e-05 ATGGAGTGGT GCGAGGGG CGAAATGTGA chr2L:3059477-3059597 14 1.07e-05 TTGCTTAACA GCGAGGGG TGGCAGACAA chr3R:10354361-10354481 60 1.07e-05 CGGGAATTTA GCGAGGGG AGATCGAAGA chrX:11855206-11855326 55 1.07e-05 GTGCGATAGG GCGAGGGG CAACTCAAAA chr2R:19297457-19297577 23 1.51e-05 AAGTGGGACT GCGAGGGC GGTTCTAATA chrX:17264544-17264664 107 1.51e-05 AAAGAAGTAG GCGAGGGC AGTTTC chr2L:12822559-12822679 28 1.51e-05 GATTTTTGGA GCGAGGGC GGCGCGATGA chr2R:23569481-23569601 5 1.51e-05 AGTT GCGAGGGC GGCACGAAAA chr3R:4977511-4977631 55 3.06e-05 GATTTTGGCC ACGAGGGT TGCTTGGCCA chr2R:18290354-18290474 40 3.06e-05 TGGGAATTCT ACGAGGGT TTCTACACGT chr2R:12743276-12743396 25 3.06e-05 GTTGCTGCAA ACGAGGGT TGTTTTCGCA chr2L:1962035-1962155 24 3.06e-05 AATTGTATTG CCGAGGGT CGCGTGACCA chr2R:12006361-12006481 41 3.06e-05 AAGACGCAGG CCGAGGGT TGCCACAACA chr3R:9258375-9258495 32 3.06e-05 TTCGAAAGGC CCGAGGGT CGCTTGGCCT chr3L:311754-311874 53 3.06e-05 AGTGTGCAGA ACGAGGGT GGATCCGAGG chr2L:874236-874356 41 3.06e-05 TCGTGCGTCA CCGAGGGT CTCCACAATT chr2L:12066138-12066258 29 3.06e-05 ATAAAATGCA ACGAGGGT GGTAACAAGA chr2L:12446313-12446433 56 3.06e-05 AAGAGCGTGG CCGAGGGT AGCCACCACA chr3R:14687187-14687307 36 3.06e-05 GATGACTTGG CCGAGGGT CGCGCATACA chr3L:17764330-17764450 65 3.06e-05 AAACAAGAAA ACGAGGGT CGTATTTGAT chr3L:12066863-12066983 63 3.06e-05 TGGACTAAAA ACGAGGGT GGTTTAATCT chr3L:14300874-14300994 37 3.06e-05 TTAACGCTGT CCGAGGGT TGACCGAAAA chrX:9931175-9931295 54 4.13e-05 AAGCTGCGAA ACGAGGGG CGACTCATAA chr3L:18348188-18348308 49 4.13e-05 ACTTGTGATA CCGAGGGG TGCGTGAAGG chr2R:17194204-17194324 43 4.13e-05 AGCCCGCAAA ACGAGGGG TGTTCGAGAA chr3R:22527345-22527465 46 4.13e-05 CGCGTGGCGG ACGAGGGG CGATCGAACA chr3L:14456421-14456541 63 4.13e-05 CTTTCAATTG CCGAGGGG AGATTGGTAA chr2R:8648033-8648153 35 4.13e-05 GCGAAGGGGC ACGAGGGG AGCACGATGA chr3R:10068936-10069056 89 4.13e-05 AGTGACGGCT ACGAGGGG ATGGGCTGGG chr2R:24281006-24281126 52 5.21e-05 CAAATAGTTG ACGAGGGC TGCCGCTGAA chr2R:20119547-20119667 88 5.21e-05 GAGTGGCAGG ACGAGGGC CGCTCGAAAC chr3L:15755109-15755229 8 5.21e-05 AAAGCCC CCGAGGGC CATTCAAAGA chr2L:4699003-4699123 61 5.21e-05 TGCGGCTGCC CCGAGGGC GGTTACAAAT chr2R:16802459-16802579 65 5.21e-05 ATGGATGCCA ACGAGGGC GGATCCAGGA chr2R:20857880-20858000 42 6.13e-05 TTTGATGACA GCGAGGTT GGGTTGTGGA chr3R:21590167-21590287 63 6.77e-05 gagtgagtga gcgaggtg tgcgtgtgta chr3R:26956528-26956648 75 6.77e-05 CAAACAAAAA GCGAGGTG CGGTTAAGAG chr3R:10125761-10125881 80 6.77e-05 CACGGAATAC GCGAGGTG TGCTTGAGAG chr3L:2474393-2474513 41 6.77e-05 TTATAGGCGA GCGAGGTG CGTTTCATGA chr3R:22751903-22752023 62 6.77e-05 CTAGCCACGA GCGAGGTG CACTACTGGA chr3L:1794153-1794273 110 7.66e-05 TCATTTAGGG GAGAGGGT GGG chr3R:23332194-23332314 33 7.66e-05 TCGCACGCGT GAGAGGGT TGCCTGATAA chr3R:9025135-9025255 23 9.20e-05 TCCCCGTTTT TCGAGGGT AGTTTTCAAC chr2R:12992008-12992128 77 9.20e-05 TCGCGTTTTT TCGAGGGT TAATACGAAA chr3L:2540384-2540504 59 9.20e-05 GTTGCTGCCC TCGAGGGT TGTCCCAATA chr3R:8304009-8304129 42 9.64e-05 TCGGTTGAGT GCGGGGGT GGATTCAGCA chr2R:14591802-14591922 15 1.19e-04 ACAAGAACGA GGGAGGGT CGAGAAGTTT chr2R:6591144-6591264 86 1.23e-04 CCCGCAAGAG GGGAGGGG CACCCTGGCC chr3L:14031930-14032050 18 1.52e-04 TTAACACATT GAGAGGGC GCTCTTATAA chr2L:11415879-11415999 19 1.52e-04 AGGAGCTGCC ACGAGGTT GAAATGAAAA chr3R:6908238-6908358 85 1.52e-04 GCTTCGCTGC ACGAGGTT CGCTGTAATA chr3L:15325595-15325715 103 1.52e-04 GCGAAAGAGA GAGAGGGC GAAATGTTGT chr3L:10791788-10791908 25 1.67e-04 GGATCGGTGA ACGAGGTG CAGGCAAACT chr3R:12381427-12381547 20 1.95e-04 ACAAATCCAC CAGAGGGT TGCCACAGAA chr3L:726758-726878 25 1.95e-04 GAGACAAGTG CAGAGGGT GGATTCACTG chr3L:6405233-6405353 30 1.99e-04 GGCAGATGTT GCGGGGGC ATCTGCGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15899990-15900110 6.3e-06 39_[+1]_73 chr2L:6704621-6704741 6.3e-06 49_[+1]_63 chr3R:16557580-16557700 6.3e-06 6_[+1]_106 chr2L:19303030-19303150 6.3e-06 22_[+1]_90 chr3L:4614041-4614161 6.3e-06 39_[+1]_73 chr2R:9140007-9140127 6.3e-06 47_[+1]_65 chr3L:6561184-6561304 6.3e-06 41_[+1]_71 chr3R:28547140-28547260 6.3e-06 41_[+1]_71 chrX:14650800-14650920 6.3e-06 53_[+1]_59 chr3R:4980385-4980505 6.3e-06 45_[+1]_67 chr3L:8033857-8033977 6.3e-06 23_[+1]_89 chr2L:5432331-5432451 6.3e-06 51_[+1]_61 chr3R:10056813-10056933 6.3e-06 28_[+1]_84 chr3L:22393126-22393246 6.3e-06 61_[+1]_51 chr3L:1922208-1922328 6.3e-06 49_[+1]_63 chr2L:4252910-4253030 6.3e-06 55_[+1]_57 chrX:3837827-3837947 6.3e-06 56_[+1]_56 chr3L:19017499-19017619 6.3e-06 36_[+1]_76 chr3R:11669160-11669280 6.3e-06 19_[+1]_93 chr2L:7262702-7262822 6.3e-06 44_[+1]_68 chr3L:5968834-5968954 6.3e-06 26_[+1]_86 chr3L:21433957-21434077 1.1e-05 1_[+1]_111 chr3R:10605228-10605348 1.1e-05 31_[+1]_81 chr2L:19203736-19203856 1.1e-05 29_[+1]_83 chr3L:4976048-4976168 1.1e-05 39_[+1]_73 chr2R:8279623-8279743 1.1e-05 72_[+1]_40 chr2L:13928581-13928701 1.1e-05 33_[+1]_79 chr3L:1930263-1930383 1.1e-05 25_[+1]_87 chr2R:23621705-23621825 1.1e-05 22_[+1]_90 chrX:2167540-2167660 1.1e-05 49_[+1]_63 chr2L:5093086-5093206 1.1e-05 25_[+1]_87 chr3L:22192267-22192387 1.1e-05 38_[+1]_74 chr2L:3059477-3059597 1.1e-05 13_[+1]_99 chr3R:10354361-10354481 1.1e-05 59_[+1]_53 chrX:11855206-11855326 1.1e-05 54_[+1]_58 chr2R:19297457-19297577 1.5e-05 22_[+1]_90 chrX:17264544-17264664 1.5e-05 106_[+1]_6 chr2L:12822559-12822679 1.5e-05 27_[+1]_85 chr2R:23569481-23569601 1.5e-05 4_[+1]_108 chr3R:4977511-4977631 3.1e-05 54_[+1]_58 chr2R:18290354-18290474 3.1e-05 39_[+1]_73 chr2R:12743276-12743396 3.1e-05 24_[+1]_88 chr2L:1962035-1962155 3.1e-05 23_[+1]_89 chr2R:12006361-12006481 3.1e-05 40_[+1]_72 chr3R:9258375-9258495 3.1e-05 31_[+1]_81 chr3L:311754-311874 3.1e-05 52_[+1]_60 chr2L:874236-874356 3.1e-05 40_[+1]_72 chr2L:12066138-12066258 3.1e-05 28_[+1]_84 chr2L:12446313-12446433 3.1e-05 55_[+1]_57 chr3R:14687187-14687307 3.1e-05 35_[+1]_77 chr3L:17764330-17764450 3.1e-05 64_[+1]_48 chr3L:12066863-12066983 3.1e-05 62_[+1]_50 chr3L:14300874-14300994 3.1e-05 36_[+1]_76 chrX:9931175-9931295 4.1e-05 53_[+1]_59 chr3L:18348188-18348308 4.1e-05 48_[+1]_64 chr2R:17194204-17194324 4.1e-05 42_[+1]_70 chr3R:22527345-22527465 4.1e-05 45_[+1]_67 chr3L:14456421-14456541 4.1e-05 62_[+1]_50 chr2R:8648033-8648153 4.1e-05 34_[+1]_78 chr3R:10068936-10069056 4.1e-05 88_[+1]_24 chr2R:24281006-24281126 5.2e-05 51_[+1]_61 chr2R:20119547-20119667 5.2e-05 87_[+1]_25 chr3L:15755109-15755229 5.2e-05 7_[+1]_105 chr2L:4699003-4699123 5.2e-05 60_[+1]_52 chr2R:16802459-16802579 5.2e-05 64_[+1]_48 chr2R:20857880-20858000 6.1e-05 41_[+1]_71 chr3R:21590167-21590287 6.8e-05 62_[+1]_50 chr3R:26956528-26956648 6.8e-05 74_[+1]_38 chr3R:10125761-10125881 6.8e-05 79_[+1]_33 chr3L:2474393-2474513 6.8e-05 40_[+1]_72 chr3R:22751903-22752023 6.8e-05 61_[+1]_51 chr3L:1794153-1794273 7.7e-05 109_[+1]_3 chr3R:23332194-23332314 7.7e-05 32_[+1]_80 chr3R:9025135-9025255 9.2e-05 22_[+1]_90 chr2R:12992008-12992128 9.2e-05 76_[+1]_36 chr3L:2540384-2540504 9.2e-05 58_[+1]_54 chr3R:8304009-8304129 9.6e-05 41_[+1]_71 chr2R:14591802-14591922 0.00012 14_[+1]_98 chr2R:6591144-6591264 0.00012 85_[+1]_27 chr3L:14031930-14032050 0.00015 17_[+1]_95 chr2L:11415879-11415999 0.00015 18_[+1]_94 chr3R:6908238-6908358 0.00015 84_[+1]_28 chr3L:15325595-15325715 0.00015 102_[+1]_10 chr3L:10791788-10791908 0.00017 24_[+1]_88 chr3R:12381427-12381547 0.0002 19_[+1]_93 chr3L:726758-726878 0.0002 24_[+1]_88 chr3L:6405233-6405353 0.0002 29_[+1]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGAGGGK width=8 seqs=87 chr2R:15899990-15900110 ( 40) GCGAGGGT 1 chr2L:6704621-6704741 ( 50) GCGAGGGT 1 chr3R:16557580-16557700 ( 7) GCGAGGGT 1 chr2L:19303030-19303150 ( 23) GCGAGGGT 1 chr3L:4614041-4614161 ( 40) GCGAGGGT 1 chr2R:9140007-9140127 ( 48) GCGAGGGT 1 chr3L:6561184-6561304 ( 42) GCGAGGGT 1 chr3R:28547140-28547260 ( 42) GCGAGGGT 1 chrX:14650800-14650920 ( 54) GCGAGGGT 1 chr3R:4980385-4980505 ( 46) GCGAGGGT 1 chr3L:8033857-8033977 ( 24) GCGAGGGT 1 chr2L:5432331-5432451 ( 52) GCGAGGGT 1 chr3R:10056813-10056933 ( 29) GCGAGGGT 1 chr3L:22393126-22393246 ( 62) GCGAGGGT 1 chr3L:1922208-1922328 ( 50) GCGAGGGT 1 chr2L:4252910-4253030 ( 56) GCGAGGGT 1 chrX:3837827-3837947 ( 57) GCGAGGGT 1 chr3L:19017499-19017619 ( 37) GCGAGGGT 1 chr3R:11669160-11669280 ( 20) GCGAGGGT 1 chr2L:7262702-7262822 ( 45) GCGAGGGT 1 chr3L:5968834-5968954 ( 27) GCGAGGGT 1 chr3L:21433957-21434077 ( 2) GCGAGGGG 1 chr3R:10605228-10605348 ( 32) GCGAGGGG 1 chr2L:19203736-19203856 ( 30) GCGAGGGG 1 chr3L:4976048-4976168 ( 40) GCGAGGGG 1 chr2R:8279623-8279743 ( 73) GCGAGGGG 1 chr2L:13928581-13928701 ( 34) GCGAGGGG 1 chr3L:1930263-1930383 ( 26) GCGAGGGG 1 chr2R:23621705-23621825 ( 23) GCGAGGGG 1 chrX:2167540-2167660 ( 50) GCGAGGGG 1 chr2L:5093086-5093206 ( 26) GCGAGGGG 1 chr3L:22192267-22192387 ( 39) GCGAGGGG 1 chr2L:3059477-3059597 ( 14) GCGAGGGG 1 chr3R:10354361-10354481 ( 60) GCGAGGGG 1 chrX:11855206-11855326 ( 55) GCGAGGGG 1 chr2R:19297457-19297577 ( 23) GCGAGGGC 1 chrX:17264544-17264664 ( 107) GCGAGGGC 1 chr2L:12822559-12822679 ( 28) GCGAGGGC 1 chr2R:23569481-23569601 ( 5) GCGAGGGC 1 chr3R:4977511-4977631 ( 55) ACGAGGGT 1 chr2R:18290354-18290474 ( 40) ACGAGGGT 1 chr2R:12743276-12743396 ( 25) ACGAGGGT 1 chr2L:1962035-1962155 ( 24) CCGAGGGT 1 chr2R:12006361-12006481 ( 41) CCGAGGGT 1 chr3R:9258375-9258495 ( 32) CCGAGGGT 1 chr3L:311754-311874 ( 53) ACGAGGGT 1 chr2L:874236-874356 ( 41) CCGAGGGT 1 chr2L:12066138-12066258 ( 29) ACGAGGGT 1 chr2L:12446313-12446433 ( 56) CCGAGGGT 1 chr3R:14687187-14687307 ( 36) CCGAGGGT 1 chr3L:17764330-17764450 ( 65) ACGAGGGT 1 chr3L:12066863-12066983 ( 63) ACGAGGGT 1 chr3L:14300874-14300994 ( 37) CCGAGGGT 1 chrX:9931175-9931295 ( 54) ACGAGGGG 1 chr3L:18348188-18348308 ( 49) CCGAGGGG 1 chr2R:17194204-17194324 ( 43) ACGAGGGG 1 chr3R:22527345-22527465 ( 46) ACGAGGGG 1 chr3L:14456421-14456541 ( 63) CCGAGGGG 1 chr2R:8648033-8648153 ( 35) ACGAGGGG 1 chr3R:10068936-10069056 ( 89) ACGAGGGG 1 chr2R:24281006-24281126 ( 52) ACGAGGGC 1 chr2R:20119547-20119667 ( 88) ACGAGGGC 1 chr3L:15755109-15755229 ( 8) CCGAGGGC 1 chr2L:4699003-4699123 ( 61) CCGAGGGC 1 chr2R:16802459-16802579 ( 65) ACGAGGGC 1 chr2R:20857880-20858000 ( 42) GCGAGGTT 1 chr3R:21590167-21590287 ( 63) GCGAGGTG 1 chr3R:26956528-26956648 ( 75) GCGAGGTG 1 chr3R:10125761-10125881 ( 80) GCGAGGTG 1 chr3L:2474393-2474513 ( 41) GCGAGGTG 1 chr3R:22751903-22752023 ( 62) GCGAGGTG 1 chr3L:1794153-1794273 ( 110) GAGAGGGT 1 chr3R:23332194-23332314 ( 33) GAGAGGGT 1 chr3R:9025135-9025255 ( 23) TCGAGGGT 1 chr2R:12992008-12992128 ( 77) TCGAGGGT 1 chr3L:2540384-2540504 ( 59) TCGAGGGT 1 chr3R:8304009-8304129 ( 42) GCGGGGGT 1 chr2R:14591802-14591922 ( 15) GGGAGGGT 1 chr2R:6591144-6591264 ( 86) GGGAGGGG 1 chr3L:14031930-14032050 ( 18) GAGAGGGC 1 chr2L:11415879-11415999 ( 19) ACGAGGTT 1 chr3R:6908238-6908358 ( 85) ACGAGGTT 1 chr3L:15325595-15325715 ( 103) GAGAGGGC 1 chr3L:10791788-10791908 ( 25) ACGAGGTG 1 chr3R:12381427-12381547 ( 20) CAGAGGGT 1 chr3L:726758-726878 ( 25) CAGAGGGT 1 chr3L:6405233-6405353 ( 30) GCGGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.86794 E= 1.2e-080 -50 -47 158 -310 -208 213 -315 -1309 -1309 -1309 229 -1309 174 -1309 -315 -1309 -1309 -1309 229 -1309 -1309 -1309 229 -1309 -1309 -1309 214 -152 -1309 -59 66 86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 1.2e-080 0.206897 0.149425 0.609195 0.034483 0.068966 0.908046 0.022989 0.000000 0.000000 0.000000 1.000000 0.000000 0.977011 0.000000 0.022989 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.896552 0.103448 0.000000 0.137931 0.321839 0.540230 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGGGK MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CGAGGG[TG] -------------------------------------------------------------------------------- Time 7.25 secs. ******************************************************************************** ******************************************************************************** MOTIF MCCCTCGC MEME-2 width = 8 sites = 68 llr = 653 E-value = 2.2e-064 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCCCTCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5::::::1 pos.-specific C 3aaa:a:7 probability G 2:::::a1 matrix T ::::a::1 bits 2.3 ** * 2.1 *** ** 1.8 *** ** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ****** (13.9 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCCTCGC consensus C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCCTCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16135438-16135558 86 1.15e-05 TTACCGATCC ACCCTCGC TAAGCAGAGT chr3R:14332640-14332760 78 1.15e-05 TTGTCAAACG CCCCTCGC TTTTCTTTCG chr2L:5295185-5295305 30 1.15e-05 TCCTTGTACA CCCCTCGC TGCTTCCTTT chr3R:29077695-29077815 85 1.15e-05 TATTCGTCCG CCCCTCGC ACTTGGCCTC chr3L:18854382-18854502 63 1.15e-05 ACTAGAACCA CCCCTCGC TCCGTCAAGT chr3L:12351619-12351739 46 1.15e-05 TGATGGAGCG ACCCTCGC TCGTCCGACT chr2R:11074152-11074272 82 1.15e-05 AGCTTAATCA ACCCTCGC ATGGCCCTTT chr2L:14668094-14668214 65 1.15e-05 TTTTTAAACG CCCCTCGC CAAGGGGGAG chrX:3377404-3377524 108 1.15e-05 CCATTGAGCA ACCCTCGC AAGCT chr3R:28888224-28888344 112 1.15e-05 CCATGCAACT ACCCTCGC T chr2L:20823068-20823188 54 1.15e-05 AAAAAAATCC ACCCTCGC ACAAAGCGCT chr3L:13182522-13182642 96 1.15e-05 CCTTTAAACT CCCCTCGC TGTGATGACA chr2R:9281679-9281799 57 1.15e-05 TCCTCGCTCG CCCCTCGC TTCCCCGTTG chr2R:23552357-23552477 64 1.15e-05 TCTTCGACAT ACCCTCGC TGAAGAGCCG chr2L:19139014-19139134 48 1.15e-05 TACAATGGCA ACCCTCGC TGATTTGATT chr3L:21055850-21055970 79 1.15e-05 ACCTGAGTCA ACCCTCGC CGCACTAGGC chr2R:23187368-23187488 62 1.15e-05 TGCTTGGCCC ACCCTCGC TGACCACTGC chr2R:20163817-20163937 84 1.15e-05 TTACTGATTA ACCCTCGC GATATCTGCA chr2L:7265122-7265242 58 1.15e-05 TTTACAAGCA ACCCTCGC TTCGACTCGC chr3R:13735247-13735367 92 1.15e-05 TCTTTGATCC ACCCTCGC GAAGCTTTCC chr2R:11444173-11444293 72 1.15e-05 TCATGGATTG ACCCTCGC CCGTGTGCAC chr3R:11869881-11870001 90 1.15e-05 TTCTGAATCC ACCCTCGC TTTGATTTTT chr3R:29574876-29574996 55 1.15e-05 TGCTCGATCC ACCCTCGC TGGTTTCATA chr3L:441763-441883 63 1.15e-05 TATAGAACCC ACCCTCGC ACAGAAATGG chrX:18452861-18452981 96 1.15e-05 TGGCTTAGCT ACCCTCGC TGGACTCCAT chr3L:17992835-17992955 79 1.15e-05 TTACCTTGCA ACCCTCGC AGGAATGCAC chr2L:5432331-5432451 103 1.15e-05 CGCTAGTTCA CCCCTCGC GCATTTGCCG chr3R:10068936-10069056 4 1.15e-05 CCA ACCCTCGC TGAGTAAACA chrX:5995574-5995694 64 1.15e-05 TAGTGTGTCA ACCCTCGC TAAAAGATCT chr3R:9870924-9871044 81 1.15e-05 AAATGAATCT CCCCTCGC GACCTGGTCG chr3L:6405233-6405353 107 1.62e-05 TTATTGAGCA GCCCTCGC TGCTGA chr2L:6277870-6277990 104 1.62e-05 TATCTGAGCA GCCCTCGC AGTCTTGGG chr3L:12789392-12789512 62 1.62e-05 TTTGTAAGCA GCCCTCGC TAAAATGTAA chr3R:31301653-31301773 93 1.62e-05 GCAGAGAGCT GCCCTCGC TGGGCGAGTT chr2R:8649325-8649445 84 1.62e-05 CGTTAAAGCA GCCCTCGC AGAGAGCGTT chrX:19295100-19295220 86 1.62e-05 CATTAAAACC GCCCTCGC ACAAACTTGT chr3R:19786221-19786341 70 1.62e-05 ACATCAACCC GCCCTCGC AGCGTCTTAT chr3R:13260175-13260295 65 1.62e-05 TCTCAGATCG GCCCTCGC TGCCAAAAGC chr2R:18263594-18263714 94 1.62e-05 CAGTGGTACC GCCCTCGC TGGCTTTGAT chr3L:726758-726878 100 1.62e-05 ATTTAGATCT GCCCTCGC TGAGATAACT chr2R:6591144-6591264 54 1.62e-05 GTTTGTGCCT GCCCTCGC ACCCCGTACG chr3R:13896726-13896846 52 3.27e-05 TCACAAATCA ACCCTCGT TATCTCTCCT chr3L:10521819-10521939 61 3.27e-05 ATACATATCT CCCCTCGT TTTTCTTGCC chrX:17264544-17264664 15 3.27e-05 TTTTCAACCG ACCCTCGT CACAAACCGT chr3R:27205194-27205314 101 3.27e-05 TCTTGAAGCA CCCCTCGT TATATTGCCT chr2R:20831604-20831724 43 3.27e-05 TTGCCACTTG ACCCTCgt ttttgtggtc chr3L:15546073-15546193 67 3.27e-05 CCATCAAACC ACCCTCGT TCGAAACTGC chr2R:22933661-22933781 85 3.27e-05 TTTAATAGCG CCCCTCGT AGGCCTAACT chr2R:24544485-24544605 74 3.27e-05 ttctcgatct ccCCTCGT TCTGTGTTTC chr3R:27597422-27597542 52 4.40e-05 TGTTGGAGTG CCCCTCGG CAGCCGGCGA chr3L:10803594-10803714 41 4.40e-05 AGTTTAAGCG CCCCTCGG AAGTCGTTAT chr3L:10526726-10526846 45 4.40e-05 TCTCATAGCA ACCCTCGG GGGGAAGGCC chr2R:19629587-19629707 99 4.40e-05 TTCTGAAACA ACCCTCGG AAAGTTGTCA chr2L:10754890-10755010 74 4.40e-05 TGCCCGATCC CCCCTCGG AAAAGCGACT chr2L:18924984-18925104 51 4.40e-05 TGCTGAAGCA ACCCTCGG ACGAGAAAGC chr2L:18628864-18628984 51 5.07e-05 TCCTCGAACA GCCCTCGT TGCAAAGTAG chr3L:15325595-15325715 84 5.07e-05 TGCTCACACG GCCCTCGT AGCGAAAGAG chr3L:10791788-10791908 82 7.16e-05 CCCTCGATCT CCCCTCGA TTTTCATCTG chr3R:23869112-23869232 111 7.16e-05 TGCAGTGTCG CCCCTCGA GT chrX:20666038-20666158 67 7.16e-05 TCCTCGAACG ACCCTCGA AGCCTTATAT chr2R:18305534-18305654 58 7.96e-05 TTTACGATCT CCCCCCGC TTGCATCTCA chr2R:10673140-10673260 95 7.96e-05 CACGCAGTCA CCCCCCGC AGAAAATCCA chr3L:1755580-1755700 57 8.62e-05 TCTTAGCACC GCCCTCGA AGCCAGCTCG chr2R:15918273-15918393 101 1.09e-04 ACATTAACCT TCCCTCGC TGAtcgctct chr2R:22725818-22725938 64 1.09e-04 TTTACGACCG AACCTCGC ATTCTTCAGT chrX:12939140-12939260 56 1.09e-04 TTCTTAAACG CACCTCGC TCCCACAACT chr2L:21026741-21026861 94 1.09e-04 CTCTCAATCT CACCTCGC AGCGGCCATG chr3R:6849898-6850018 99 1.36e-04 CGACAAAACG ACCCTCTC GTGCGTTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCCTCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16135438-16135558 1.1e-05 85_[+2]_27 chr3R:14332640-14332760 1.1e-05 77_[+2]_35 chr2L:5295185-5295305 1.1e-05 29_[+2]_83 chr3R:29077695-29077815 1.1e-05 84_[+2]_28 chr3L:18854382-18854502 1.1e-05 62_[+2]_50 chr3L:12351619-12351739 1.1e-05 45_[+2]_67 chr2R:11074152-11074272 1.1e-05 81_[+2]_31 chr2L:14668094-14668214 1.1e-05 64_[+2]_48 chrX:3377404-3377524 1.1e-05 107_[+2]_5 chr3R:28888224-28888344 1.1e-05 111_[+2]_1 chr2L:20823068-20823188 1.1e-05 53_[+2]_59 chr3L:13182522-13182642 1.1e-05 95_[+2]_17 chr2R:9281679-9281799 1.1e-05 56_[+2]_56 chr2R:23552357-23552477 1.1e-05 63_[+2]_49 chr2L:19139014-19139134 1.1e-05 47_[+2]_65 chr3L:21055850-21055970 1.1e-05 78_[+2]_34 chr2R:23187368-23187488 1.1e-05 61_[+2]_51 chr2R:20163817-20163937 1.1e-05 83_[+2]_29 chr2L:7265122-7265242 1.1e-05 57_[+2]_55 chr3R:13735247-13735367 1.1e-05 91_[+2]_21 chr2R:11444173-11444293 1.1e-05 71_[+2]_41 chr3R:11869881-11870001 1.1e-05 89_[+2]_23 chr3R:29574876-29574996 1.1e-05 54_[+2]_58 chr3L:441763-441883 1.1e-05 62_[+2]_50 chrX:18452861-18452981 1.1e-05 95_[+2]_17 chr3L:17992835-17992955 1.1e-05 78_[+2]_34 chr2L:5432331-5432451 1.1e-05 102_[+2]_10 chr3R:10068936-10069056 1.1e-05 3_[+2]_109 chrX:5995574-5995694 1.1e-05 63_[+2]_49 chr3R:9870924-9871044 1.1e-05 80_[+2]_32 chr3L:6405233-6405353 1.6e-05 106_[+2]_6 chr2L:6277870-6277990 1.6e-05 103_[+2]_9 chr3L:12789392-12789512 1.6e-05 61_[+2]_51 chr3R:31301653-31301773 1.6e-05 92_[+2]_20 chr2R:8649325-8649445 1.6e-05 83_[+2]_29 chrX:19295100-19295220 1.6e-05 85_[+2]_27 chr3R:19786221-19786341 1.6e-05 69_[+2]_43 chr3R:13260175-13260295 1.6e-05 64_[+2]_48 chr2R:18263594-18263714 1.6e-05 93_[+2]_19 chr3L:726758-726878 1.6e-05 99_[+2]_13 chr2R:6591144-6591264 1.6e-05 53_[+2]_59 chr3R:13896726-13896846 3.3e-05 51_[+2]_61 chr3L:10521819-10521939 3.3e-05 60_[+2]_52 chrX:17264544-17264664 3.3e-05 14_[+2]_98 chr3R:27205194-27205314 3.3e-05 100_[+2]_12 chr2R:20831604-20831724 3.3e-05 42_[+2]_70 chr3L:15546073-15546193 3.3e-05 66_[+2]_46 chr2R:22933661-22933781 3.3e-05 84_[+2]_28 chr2R:24544485-24544605 3.3e-05 73_[+2]_39 chr3R:27597422-27597542 4.4e-05 51_[+2]_61 chr3L:10803594-10803714 4.4e-05 40_[+2]_72 chr3L:10526726-10526846 4.4e-05 44_[+2]_68 chr2R:19629587-19629707 4.4e-05 98_[+2]_14 chr2L:10754890-10755010 4.4e-05 73_[+2]_39 chr2L:18924984-18925104 4.4e-05 50_[+2]_62 chr2L:18628864-18628984 5.1e-05 50_[+2]_62 chr3L:15325595-15325715 5.1e-05 83_[+2]_29 chr3L:10791788-10791908 7.2e-05 81_[+2]_31 chr3R:23869112-23869232 7.2e-05 110_[+2]_2 chrX:20666038-20666158 7.2e-05 66_[+2]_46 chr2R:18305534-18305654 8e-05 57_[+2]_55 chr2R:10673140-10673260 8e-05 94_[+2]_18 chr3L:1755580-1755700 8.6e-05 56_[+2]_56 chr2R:15918273-15918393 0.00011 100_[+2]_12 chr2R:22725818-22725938 0.00011 63_[+2]_49 chrX:12939140-12939260 0.00011 55_[+2]_57 chr2L:21026741-21026861 0.00011 93_[+2]_19 chr3R:6849898-6850018 0.00014 98_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCCTCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCCCTCGC width=8 seqs=68 chr2R:16135438-16135558 ( 86) ACCCTCGC 1 chr3R:14332640-14332760 ( 78) CCCCTCGC 1 chr2L:5295185-5295305 ( 30) CCCCTCGC 1 chr3R:29077695-29077815 ( 85) CCCCTCGC 1 chr3L:18854382-18854502 ( 63) CCCCTCGC 1 chr3L:12351619-12351739 ( 46) ACCCTCGC 1 chr2R:11074152-11074272 ( 82) ACCCTCGC 1 chr2L:14668094-14668214 ( 65) CCCCTCGC 1 chrX:3377404-3377524 ( 108) ACCCTCGC 1 chr3R:28888224-28888344 ( 112) ACCCTCGC 1 chr2L:20823068-20823188 ( 54) ACCCTCGC 1 chr3L:13182522-13182642 ( 96) CCCCTCGC 1 chr2R:9281679-9281799 ( 57) CCCCTCGC 1 chr2R:23552357-23552477 ( 64) ACCCTCGC 1 chr2L:19139014-19139134 ( 48) ACCCTCGC 1 chr3L:21055850-21055970 ( 79) ACCCTCGC 1 chr2R:23187368-23187488 ( 62) ACCCTCGC 1 chr2R:20163817-20163937 ( 84) ACCCTCGC 1 chr2L:7265122-7265242 ( 58) ACCCTCGC 1 chr3R:13735247-13735367 ( 92) ACCCTCGC 1 chr2R:11444173-11444293 ( 72) ACCCTCGC 1 chr3R:11869881-11870001 ( 90) ACCCTCGC 1 chr3R:29574876-29574996 ( 55) ACCCTCGC 1 chr3L:441763-441883 ( 63) ACCCTCGC 1 chrX:18452861-18452981 ( 96) ACCCTCGC 1 chr3L:17992835-17992955 ( 79) ACCCTCGC 1 chr2L:5432331-5432451 ( 103) CCCCTCGC 1 chr3R:10068936-10069056 ( 4) ACCCTCGC 1 chrX:5995574-5995694 ( 64) ACCCTCGC 1 chr3R:9870924-9871044 ( 81) CCCCTCGC 1 chr3L:6405233-6405353 ( 107) GCCCTCGC 1 chr2L:6277870-6277990 ( 104) GCCCTCGC 1 chr3L:12789392-12789512 ( 62) GCCCTCGC 1 chr3R:31301653-31301773 ( 93) GCCCTCGC 1 chr2R:8649325-8649445 ( 84) GCCCTCGC 1 chrX:19295100-19295220 ( 86) GCCCTCGC 1 chr3R:19786221-19786341 ( 70) GCCCTCGC 1 chr3R:13260175-13260295 ( 65) GCCCTCGC 1 chr2R:18263594-18263714 ( 94) GCCCTCGC 1 chr3L:726758-726878 ( 100) GCCCTCGC 1 chr2R:6591144-6591264 ( 54) GCCCTCGC 1 chr3R:13896726-13896846 ( 52) ACCCTCGT 1 chr3L:10521819-10521939 ( 61) CCCCTCGT 1 chrX:17264544-17264664 ( 15) ACCCTCGT 1 chr3R:27205194-27205314 ( 101) CCCCTCGT 1 chr2R:20831604-20831724 ( 43) ACCCTCGT 1 chr3L:15546073-15546193 ( 67) ACCCTCGT 1 chr2R:22933661-22933781 ( 85) CCCCTCGT 1 chr2R:24544485-24544605 ( 74) CCCCTCGT 1 chr3R:27597422-27597542 ( 52) CCCCTCGG 1 chr3L:10803594-10803714 ( 41) CCCCTCGG 1 chr3L:10526726-10526846 ( 45) ACCCTCGG 1 chr2R:19629587-19629707 ( 99) ACCCTCGG 1 chr2L:10754890-10755010 ( 74) CCCCTCGG 1 chr2L:18924984-18925104 ( 51) ACCCTCGG 1 chr2L:18628864-18628984 ( 51) GCCCTCGT 1 chr3L:15325595-15325715 ( 84) GCCCTCGT 1 chr3L:10791788-10791908 ( 82) CCCCTCGA 1 chr3R:23869112-23869232 ( 111) CCCCTCGA 1 chrX:20666038-20666158 ( 67) ACCCTCGA 1 chr2R:18305534-18305654 ( 58) CCCCCCGC 1 chr2R:10673140-10673260 ( 95) CCCCCCGC 1 chr3L:1755580-1755700 ( 57) GCCCTCGA 1 chr2R:15918273-15918393 ( 101) TCCCTCGC 1 chr2R:22725818-22725938 ( 64) AACCTCGC 1 chrX:12939140-12939260 ( 56) CACCTCGC 1 chr2L:21026741-21026861 ( 94) CACCTCGC 1 chr3R:6849898-6850018 ( 99) ACCCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCCTCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0621 E= 2.2e-064 64 64 1 -433 -273 221 -1273 -1273 -1273 227 -1273 -1273 -1273 227 -1273 -1273 -1273 -281 -1273 171 -1273 227 -1273 -1273 -1273 -1273 227 -433 -231 177 -121 -101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCCTCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.2e-064 0.455882 0.323529 0.205882 0.014706 0.044118 0.955882 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.029412 0.000000 0.970588 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.985294 0.014706 0.058824 0.705882 0.088235 0.147059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCCCTCGC MEME-2 regular expression -------------------------------------------------------------------------------- [ACG]CCCTCGC -------------------------------------------------------------------------------- Time 13.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGCTGC MEME-3 width = 8 sites = 22 llr = 205 E-value = 6.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGCTGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::4::3:: pos.-specific C :7::7::a probability G a::a::a: matrix T :36:37:: bits 2.3 * * ** 2.1 * * ** 1.8 * * ** 1.6 * * ** Relative 1.4 ** ** ** Entropy 1.1 ** ** ** (13.4 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus TA TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCTGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10605228-10605348 91 6.64e-06 GTACATGGCC GCTGCTGC GGCTCCGGAG chr2R:20119547-20119667 12 6.64e-06 GGATTCCCTT GCTGCTGC CCGCGTTTTT chr3R:23332194-23332314 109 6.64e-06 TAACTCTTCT GCTGCTGC TTCT chr3R:29574876-29574996 109 6.64e-06 GTGCATTGAA GCTGCTGC AGGG chr3L:8440788-8440908 49 4.52e-05 gtttgttgtt gttgctgc ttttgtagct chr2R:12743276-12743396 15 4.52e-05 AATTTCCAAA GTTGCTGC AAACGAGGGT chr3R:9025135-9025255 59 4.52e-05 TCGCTTAGGG GTTGCTGC AGTTTCACAG chr3R:26956528-26956648 35 4.52e-05 TTTCCGGTGA GCAGCAGC GACATCTTGC chr3R:11669362-11669482 49 4.52e-05 aactacggag gcagcagc aacatcatcg chr2R:10673140-10673260 75 4.52e-05 TCGCGGCAAT GTTGCTGC AACACGCAGT chr3R:14369673-14369793 4 4.52e-05 gtt gctgttgc tgttgttgtG chr3L:2540384-2540504 49 4.52e-05 CCAAACTCTT GTTGCTGC CCTCGAGGGT chr3R:9258375-9258495 101 4.52e-05 ACGTGACAGT GTTGCTGC TGTAAATTCA chr3L:6561184-6561304 27 4.52e-05 ATATTTTCAA GCAGCAGC TTAAAGTGCG chr3R:27205194-27205314 1 4.52e-05 . GCTGTTGC ACAATATATG chr2R:20831604-20831724 75 4.52e-05 ttgttgtgtt gctgttgc tgtggctgct chr3R:11669160-11669280 65 4.52e-05 TGTTACCACA GCAGCAGC GGCAACAGAG chr2L:7262702-7262822 11 4.52e-05 agcaaaagta gcagcagc aATCAATTTA chr2R:24544485-24544605 8 4.52e-05 CCACCTT GCAGCAGc catctccact chr3R:30103156-30103276 78 6.39e-05 AGACATCACG GCAGTTGC CGGGTTCTCT chr2R:8648033-8648153 57 6.39e-05 CGATGACTAT GCAGTTGC ATTCAATTTG chr3L:1922208-1922328 81 6.39e-05 CTGGTACTTC GCAGTTGC TTTAGTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCTGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10605228-10605348 6.6e-06 90_[+3]_22 chr2R:20119547-20119667 6.6e-06 11_[+3]_101 chr3R:23332194-23332314 6.6e-06 108_[+3]_4 chr3R:29574876-29574996 6.6e-06 108_[+3]_4 chr3L:8440788-8440908 4.5e-05 48_[+3]_64 chr2R:12743276-12743396 4.5e-05 14_[+3]_98 chr3R:9025135-9025255 4.5e-05 58_[+3]_54 chr3R:26956528-26956648 4.5e-05 34_[+3]_78 chr3R:11669362-11669482 4.5e-05 48_[+3]_64 chr2R:10673140-10673260 4.5e-05 74_[+3]_38 chr3R:14369673-14369793 4.5e-05 3_[+3]_109 chr3L:2540384-2540504 4.5e-05 48_[+3]_64 chr3R:9258375-9258495 4.5e-05 100_[+3]_12 chr3L:6561184-6561304 4.5e-05 26_[+3]_86 chr3R:27205194-27205314 4.5e-05 [+3]_112 chr2R:20831604-20831724 4.5e-05 74_[+3]_38 chr3R:11669160-11669280 4.5e-05 64_[+3]_48 chr2L:7262702-7262822 4.5e-05 10_[+3]_102 chr2R:24544485-24544605 4.5e-05 7_[+3]_105 chr3R:30103156-30103276 6.4e-05 77_[+3]_35 chr2R:8648033-8648153 6.4e-05 56_[+3]_56 chr3L:1922208-1922328 6.4e-05 80_[+3]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCTGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGCTGC width=8 seqs=22 chr3R:10605228-10605348 ( 91) GCTGCTGC 1 chr2R:20119547-20119667 ( 12) GCTGCTGC 1 chr3R:23332194-23332314 ( 109) GCTGCTGC 1 chr3R:29574876-29574996 ( 109) GCTGCTGC 1 chr3L:8440788-8440908 ( 49) GTTGCTGC 1 chr2R:12743276-12743396 ( 15) GTTGCTGC 1 chr3R:9025135-9025255 ( 59) GTTGCTGC 1 chr3R:26956528-26956648 ( 35) GCAGCAGC 1 chr3R:11669362-11669482 ( 49) GCAGCAGC 1 chr2R:10673140-10673260 ( 75) GTTGCTGC 1 chr3R:14369673-14369793 ( 4) GCTGTTGC 1 chr3L:2540384-2540504 ( 49) GTTGCTGC 1 chr3R:9258375-9258495 ( 101) GTTGCTGC 1 chr3L:6561184-6561304 ( 27) GCAGCAGC 1 chr3R:27205194-27205314 ( 1) GCTGTTGC 1 chr2R:20831604-20831724 ( 75) GCTGTTGC 1 chr3R:11669160-11669280 ( 65) GCAGCAGC 1 chr2L:7262702-7262822 ( 11) GCAGCAGC 1 chr2R:24544485-24544605 ( 8) GCAGCAGC 1 chr3R:30103156-30103276 ( 78) GCAGTTGC 1 chr2R:8648033-8648153 ( 57) GCAGTTGC 1 chr3L:1922208-1922328 ( 81) GCAGTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCTGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 6.0e+002 -1110 -1110 229 -1110 -1110 181 -1110 -12 49 -1110 -1110 99 -1110 -1110 229 -1110 -1110 181 -1110 -12 -10 -1110 -1110 129 -1110 -1110 229 -1110 -1110 227 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCTGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 6.0e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.000000 0.272727 0.409091 0.000000 0.000000 0.590909 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.000000 0.272727 0.272727 0.000000 0.000000 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCTGC MEME-3 regular expression -------------------------------------------------------------------------------- G[CT][TA]G[CT][TA]GC -------------------------------------------------------------------------------- Time 19.22 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGGTGTG MEME-4 width = 8 sites = 2 llr = 23 E-value = 3.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :aaa:a:a matrix T a:::a:a: bits 2.3 *** * * 2.1 *** * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17510279-17510399 93 9.26e-06 TTTTAGAATC TGGGTGTG TAATATACCC chr2L:1962035-1962155 105 9.26e-06 AGGGGCGGCG TGGGTGTG GCCACCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17510279-17510399 9.3e-06 92_[+4]_20 chr2L:1962035-1962155 9.3e-06 104_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGTGTG width=8 seqs=2 chrX:17510279-17510399 ( 93) TGGGTGTG 1 chr2L:1962035-1962155 ( 105) TGGGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.4e+005 -765 -765 -765 175 -765 -765 229 -765 -765 -765 229 -765 -765 -765 229 -765 -765 -765 -765 175 -765 -765 229 -765 -765 -765 -765 175 -765 -765 229 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- TGGGTGTG -------------------------------------------------------------------------------- Time 25.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGCWG MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGCWG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::5: pos.-specific C :a:::a:: probability G a:aaa::a matrix T ::::::5: bits 2.3 ****** * 2.1 ****** * 1.8 ****** * 1.6 ****** * Relative 1.4 ****** * Entropy 1.1 ****** * (16.8 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGCAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCWG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18266885-18267005 61 8.92e-06 ATGCCACTAA GCGGGCTG ATTGAGCAGT chr3L:21281536-21281656 60 8.92e-06 CAACATTTCG GCGGGCAG ATTGAAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCWG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18266885-18267005 8.9e-06 60_[+5]_52 chr3L:21281536-21281656 8.9e-06 59_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCWG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGCWG width=8 seqs=2 chr3L:18266885-18267005 ( 61) GCGGGCTG 1 chr3L:21281536-21281656 ( 60) GCGGGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCWG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.9e+005 -765 -765 229 -765 -765 227 -765 -765 -765 -765 229 -765 -765 -765 229 -765 -765 -765 229 -765 -765 227 -765 -765 77 -765 -765 75 -765 -765 229 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCWG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGCWG MEME-5 regular expression -------------------------------------------------------------------------------- GCGGGC[AT]G -------------------------------------------------------------------------------- Time 31.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5968834-5968954 2.58e-03 26_[+1(6.34e-06)]_86 chr3R:6881393-6881513 1.00e+00 120 chr3R:9870924-9871044 2.19e-02 80_[+2(1.15e-05)]_32 chr2R:24544485-24544605 1.37e-02 7_[+3(4.52e-05)]_58_[+2(3.27e-05)]_\ 39 chr2R:11404507-11404627 8.43e-01 120 chr2L:7262702-7262822 1.50e-03 10_[+3(4.52e-05)]_26_[+1(6.34e-06)]_\ 68 chr3R:11669160-11669280 1.96e-03 19_[+1(6.34e-06)]_37_[+3(4.52e-05)]_\ 48 chr3L:19017499-19017619 2.27e-04 36_[+1(6.34e-06)]_76 chrX:3837827-3837947 7.60e-03 56_[+1(6.34e-06)]_56 chr2L:21026741-21026861 4.03e-02 120 chr2L:18924984-18925104 5.58e-02 50_[+2(4.40e-05)]_62 chr2L:4252910-4253030 6.69e-03 55_[+1(6.34e-06)]_57 chrX:5995574-5995694 8.38e-02 63_[+2(1.15e-05)]_49 chr3R:10068936-10069056 2.09e-04 3_[+2(1.15e-05)]_77_[+1(4.13e-05)]_\ 24 chr3L:14300874-14300994 1.34e-01 36_[+1(3.06e-05)]_76 chr3L:1922208-1922328 4.65e-04 49_[+1(6.34e-06)]_23_[+3(6.39e-05)]_\ 32 chr2L:19836427-19836547 8.05e-01 120 chr3L:22393126-22393246 9.07e-05 8_[+4(9.26e-06)]_45_[+1(6.34e-06)]_\ 51 chr2R:22933661-22933781 1.07e-01 84_[+2(3.27e-05)]_28 chr3L:12066863-12066983 1.07e-02 62_[+1(3.06e-05)]_50 chrX:11855206-11855326 4.18e-02 54_[+1(1.07e-05)]_58 chr3R:26000836-26000956 3.06e-01 120 chr3R:8304009-8304129 2.44e-02 41_[+1(9.64e-05)]_71 chr3L:17764330-17764450 1.47e-01 64_[+1(3.06e-05)]_48 chr2R:14591802-14591922 1.73e-01 120 chr3R:26443463-26443583 9.79e-02 120 chr3R:14687187-14687307 4.11e-02 35_[+1(3.06e-05)]_77 chr2R:16802459-16802579 1.92e-02 64_[+1(5.21e-05)]_48 chr3R:10056813-10056933 8.96e-03 28_[+1(6.34e-06)]_84 chr3L:18233089-18233209 9.53e-01 120 chr2R:6591144-6591264 5.87e-04 53_[+2(1.62e-05)]_59 chr2L:5432331-5432451 1.55e-04 51_[+1(6.34e-06)]_43_[+2(1.15e-05)]_\ 10 chr2R:8648033-8648153 2.69e-03 34_[+1(4.13e-05)]_14_[+3(6.39e-05)]_\ 56 chr3L:17992835-17992955 2.76e-02 6_[+2(7.96e-05)]_64_[+2(1.15e-05)]_\ 34 chr2L:2861893-2862013 1.22e-01 8_[+4(7.50e-05)]_104 chr3L:8033857-8033977 4.59e-03 23_[+1(6.34e-06)]_89 chr3L:726758-726878 8.31e-03 99_[+2(1.62e-05)]_13 chr2R:18263594-18263714 5.64e-02 93_[+2(1.62e-05)]_19 chr3R:10354361-10354481 4.55e-02 59_[+1(1.07e-05)]_53 chrX:18452861-18452981 6.98e-02 95_[+2(1.15e-05)]_17 chr3L:15325595-15325715 1.99e-02 83_[+2(5.07e-05)]_29 chr3L:441763-441883 5.08e-02 62_[+2(1.15e-05)]_50 chr3L:14989596-14989716 8.48e-01 120 chrX:12939140-12939260 4.70e-01 120 chr3R:29574876-29574996 2.40e-04 54_[+2(1.15e-05)]_46_[+3(6.64e-06)]_\ 4 chr3R:4980385-4980505 8.08e-03 45_[+1(6.34e-06)]_67 chr2L:3059477-3059597 4.28e-03 13_[+1(1.07e-05)]_99 chr2L:1449792-1449912 1.00e+00 120 chr2L:12492889-12493009 9.99e-01 120 chrX:20666038-20666158 3.18e-02 66_[+2(7.16e-05)]_46 chr3R:11869881-11870001 1.00e-01 89_[+2(1.15e-05)]_23 chr2L:10754890-10755010 3.68e-02 73_[+2(4.40e-05)]_39 chr3L:22192267-22192387 8.45e-02 38_[+1(1.07e-05)]_74 chr2R:11444173-11444293 5.00e-02 71_[+2(1.15e-05)]_41 chr2L:12446313-12446433 4.78e-02 55_[+1(3.06e-05)]_57 chr2L:12066138-12066258 1.40e-01 28_[+1(3.06e-05)]_84 chr3L:14456421-14456541 7.11e-02 62_[+1(4.13e-05)]_50 chr3L:15546073-15546193 1.49e-02 66_[+2(3.27e-05)]_46 chr2L:874236-874356 2.79e-02 40_[+1(3.06e-05)]_72 chr3L:441962-442082 9.99e-01 120 chr3L:22795725-22795845 7.00e-01 120 chr3R:6908238-6908358 4.59e-01 120 chrX:14650800-14650920 2.70e-03 53_[+1(6.34e-06)]_59 chr3L:6082630-6082750 9.38e-01 120 chr3L:311754-311874 6.42e-02 52_[+1(3.06e-05)]_60 chr3R:13735247-13735367 5.55e-02 91_[+2(1.15e-05)]_21 chr2R:20831604-20831724 5.37e-03 42_[+2(3.27e-05)]_24_[+3(4.52e-05)]_\ 38 chr3R:13260175-13260295 9.43e-02 64_[+2(1.62e-05)]_48 chr3R:15667011-15667131 8.15e-01 120 chr3R:27205194-27205314 1.61e-02 [+3(4.52e-05)]_92_[+2(3.27e-05)]_12 chr2L:5093086-5093206 3.26e-02 25_[+1(1.07e-05)]_87 chr2R:23569481-23569601 7.76e-03 4_[+1(1.51e-05)]_108 chr3R:28547140-28547260 4.23e-03 41_[+1(6.34e-06)]_71 chr2R:20977173-20977293 2.21e-01 120 chr3L:6561184-6561304 1.19e-03 26_[+3(4.52e-05)]_7_[+1(6.34e-06)]_\ 71 chr3R:19786221-19786341 9.74e-02 69_[+2(1.62e-05)]_43 chrX:2167540-2167660 1.96e-04 49_[+1(1.07e-05)]_63 chr2R:23621705-23621825 1.34e-02 22_[+1(1.07e-05)]_90 chr2L:7265122-7265242 9.79e-03 57_[+2(1.15e-05)]_55 chr3R:9258375-9258495 4.85e-03 31_[+1(3.06e-05)]_61_[+3(4.52e-05)]_\ 12 chrX:15383819-15383939 1.70e-01 120 chr3R:12381427-12381547 3.24e-01 120 chr3R:22751903-22752023 1.48e-01 61_[+1(6.77e-05)]_51 chr2L:4699003-4699123 4.52e-03 60_[+1(5.21e-05)]_52 chr3L:2474393-2474513 9.10e-02 40_[+1(6.77e-05)]_72 chr3L:1930263-1930383 1.68e-03 25_[+1(1.07e-05)]_87 chr3L:21281536-21281656 7.79e-02 59_[+5(8.92e-06)]_53 chr2R:20163817-20163937 1.40e-02 83_[+2(1.15e-05)]_29 chrX:9993551-9993671 8.02e-01 120 chr2L:11415879-11415999 2.84e-02 120 chrX:5983508-5983628 9.97e-01 120 chr2R:23187368-23187488 6.99e-02 61_[+2(1.15e-05)]_51 chr3L:2540384-2540504 4.54e-04 48_[+3(4.52e-05)]_64 chr3L:21055850-21055970 1.90e-02 37_[+2(7.96e-05)]_33_[+2(1.15e-05)]_\ 34 chr2L:13928581-13928701 2.84e-03 33_[+1(1.07e-05)]_79 chr3L:18272407-18272527 9.35e-01 120 chrX:8734489-8734609 9.65e-01 120 chr2R:14592005-14592125 6.82e-01 120 chr2L:12822559-12822679 1.07e-02 27_[+1(1.51e-05)]_85 chr2R:9140007-9140127 3.19e-02 47_[+1(6.34e-06)]_65 chr2L:19903005-19903125 2.70e-01 120 chr3L:15755109-15755229 1.47e-02 7_[+1(5.21e-05)]_105 chr2L:6171287-6171407 2.24e-01 120 chr3L:4614041-4614161 3.72e-02 39_[+1(6.34e-06)]_73 chr3R:14755532-14755652 6.60e-01 120 chr2L:19139014-19139134 8.89e-03 47_[+2(1.15e-05)]_65 chr2L:18628864-18628984 9.86e-02 50_[+2(5.07e-05)]_62 chr2R:23552357-23552477 3.32e-02 63_[+2(1.15e-05)]_49 chr2L:19303030-19303150 3.31e-03 22_[+1(6.34e-06)]_90 chr2R:9281679-9281799 9.62e-03 56_[+2(1.15e-05)]_56 chr2R:19629587-19629707 9.60e-02 98_[+2(4.40e-05)]_14 chr2L:11823565-11823685 1.00e+00 120 chr3R:23332194-23332314 7.10e-04 32_[+1(7.66e-05)]_68_[+3(6.64e-06)]_\ 4 chr3R:14369673-14369793 1.02e-02 3_[+3(4.52e-05)]_109 chr3L:13182522-13182642 3.81e-02 95_[+2(1.15e-05)]_17 chr2L:20823068-20823188 3.26e-02 53_[+2(1.15e-05)]_59 chr3R:30103156-30103276 2.36e-02 77_[+3(6.39e-05)]_35 chr2R:8279623-8279743 1.07e-03 72_[+1(1.07e-05)]_40 chr2R:22725818-22725938 2.09e-01 120 chrX:19295100-19295220 2.00e-01 85_[+2(1.62e-05)]_27 chr3R:16557580-16557700 4.89e-02 6_[+1(6.34e-06)]_106 chr3R:22527345-22527465 1.74e-02 45_[+1(4.13e-05)]_67 chr3R:23869112-23869232 1.58e-01 110_[+2(7.16e-05)]_2 chrX:3731064-3731184 5.26e-01 120 chr2L:6704621-6704741 3.73e-03 49_[+1(6.34e-06)]_63 chr2R:17194204-17194324 5.71e-02 42_[+1(4.13e-05)]_70 chr2R:10673140-10673260 1.26e-02 74_[+3(4.52e-05)]_12_[+2(7.96e-05)]_\ 18 chr3R:31597705-31597825 1.91e-01 120 chr3L:10526726-10526846 4.66e-03 44_[+2(4.40e-05)]_68 chr2R:18305534-18305654 3.27e-02 57_[+2(7.96e-05)]_55 chr3L:18348188-18348308 1.91e-02 48_[+1(4.13e-05)]_64 chr2R:12006361-12006481 2.58e-02 40_[+1(3.06e-05)]_72 chr3L:10803594-10803714 1.32e-01 40_[+2(4.40e-05)]_72 chr3R:28888224-28888344 8.35e-03 111_[+2(1.15e-05)]_1 chr3R:14811939-14812059 6.53e-01 120 chr3R:11669362-11669482 1.19e-01 48_[+3(4.52e-05)]_64 chr2L:3124552-3124672 1.26e-01 120 chr3R:10125761-10125881 2.97e-02 79_[+1(6.77e-05)]_33 chr2R:20857880-20858000 8.71e-02 41_[+1(6.13e-05)]_71 chr3L:18267118-18267238 9.99e-01 120 chr2R:15899990-15900110 5.33e-03 39_[+1(6.34e-06)]_73 chr3L:153555-153675 1.20e-01 120 chr3L:18266885-18267005 7.82e-02 60_[+5(8.92e-06)]_52 chr3R:26956528-26956648 2.16e-03 34_[+3(4.52e-05)]_32_[+1(6.77e-05)]_\ 38 chr2R:8649325-8649445 7.85e-02 45_[+2(4.40e-05)]_30_[+2(1.62e-05)]_\ 29 chr3R:21590167-21590287 9.81e-03 62_[+1(6.77e-05)]_50 chr2R:12992008-12992128 2.41e-01 76_[+1(9.20e-05)]_36 chr2R:20119547-20119667 1.29e-05 11_[+3(6.64e-06)]_68_[+1(5.21e-05)]_\ 25 chr3R:31301653-31301773 4.81e-03 92_[+2(1.62e-05)]_20 chrX:3377404-3377524 3.50e-02 107_[+2(1.15e-05)]_5 chr2L:4459777-4459897 3.64e-01 120 chr3R:9025135-9025255 5.09e-03 22_[+1(9.20e-05)]_28_[+3(4.52e-05)]_\ 54 chr3L:10791788-10791908 1.86e-02 70_[+2(7.16e-05)]_3_[+2(7.16e-05)]_\ 31 chr2L:14668094-14668214 9.45e-03 64_[+2(1.15e-05)]_48 chr3L:4976048-4976168 5.00e-03 39_[+1(1.07e-05)]_73 chr2R:11074152-11074272 3.62e-02 81_[+2(1.15e-05)]_31 chrX:17264544-17264664 1.78e-05 14_[+2(3.27e-05)]_84_[+1(1.51e-05)]_\ 6 chr2L:19203736-19203856 3.03e-02 29_[+1(1.07e-05)]_83 chr3L:12351619-12351739 7.42e-02 45_[+2(1.15e-05)]_67 chr3L:12789392-12789512 1.30e-01 61_[+2(1.62e-05)]_51 chrX:3161094-3161214 9.07e-01 120 chr3L:18854382-18854502 5.59e-02 62_[+2(1.15e-05)]_50 chr2R:21662465-21662585 9.46e-01 120 chrX:9931175-9931295 1.96e-02 53_[+1(4.13e-05)]_59 chrX:22852965-22853085 8.35e-01 120 chr3R:16321620-16321740 6.63e-01 120 chr2L:1962035-1962155 3.26e-04 23_[+1(3.06e-05)]_73_[+4(9.26e-06)]_\ 8 chr2R:12743276-12743396 5.27e-03 14_[+3(4.52e-05)]_2_[+1(3.06e-05)]_\ 88 chr4:647534-647654 4.49e-01 120 chr3R:27597422-27597542 8.06e-03 51_[+2(4.40e-05)]_61 chr3L:10521819-10521939 1.68e-01 60_[+2(3.27e-05)]_52 chr3R:22464660-22464780 8.21e-01 120 chr2L:6277870-6277990 1.54e-01 103_[+2(1.62e-05)]_9 chr3R:25636824-25636944 1.66e-03 [+5(8.92e-06)]_112 chr2R:19792433-19792553 2.93e-01 120 chrX:13134990-13135110 4.71e-01 120 chr2R:19297457-19297577 9.98e-03 22_[+1(1.51e-05)]_90 chr3R:13896726-13896846 6.61e-02 10_[+2(4.40e-05)]_33_[+2(3.27e-05)]_\ 61 chr3L:9548075-9548195 6.88e-01 120 chr2L:5063061-5063181 4.00e-01 120 chr3R:29077695-29077815 2.23e-03 84_[+2(1.15e-05)]_28 chr3L:6405233-6405353 7.24e-04 106_[+2(1.62e-05)]_6 chr3R:10605228-10605348 4.21e-05 31_[+1(1.07e-05)]_51_[+3(6.64e-06)]_\ 22 chr2L:5295185-5295305 4.02e-03 29_[+2(1.15e-05)]_83 chr2R:15918273-15918393 1.55e-01 120 chr3R:14332640-14332760 1.25e-01 77_[+2(1.15e-05)]_35 chrX:19243245-19243365 7.99e-01 120 chr2R:18290354-18290474 1.87e-01 39_[+1(3.06e-05)]_73 chr3R:4977511-4977631 3.74e-02 54_[+1(3.06e-05)]_58 chr2R:11970271-11970391 8.04e-01 120 chr3L:21433957-21434077 4.95e-02 1_[+1(1.07e-05)]_111 chr2R:24281006-24281126 3.67e-03 51_[+1(5.21e-05)]_61 chr3L:18786163-18786283 1.00e+00 120 chr2R:13028981-13029101 8.64e-01 120 chr3L:3072175-3072295 9.65e-01 120 chr3R:25519906-25520026 9.18e-01 120 chr3L:11716586-11716706 9.73e-01 120 chr3L:17404880-17405000 1.00e+00 120 chr2R:19310965-19311085 9.62e-01 120 chr3L:2411062-2411182 1.00e+00 120 chr2R:21091905-21092025 9.39e-01 120 chr3R:24817198-24817318 1.00e+00 120 chr3L:3932896-3933016 4.09e-01 120 chr2R:23154696-23154816 9.05e-01 120 chr3R:24580596-24580716 8.58e-01 120 chr2R:13996726-13996846 9.96e-01 120 chrX:4457752-4457872 9.74e-01 120 chr3R:6849898-6850018 2.62e-02 120 chr2R:10160486-10160606 8.85e-01 120 chr2R:16135438-16135558 1.55e-01 85_[+2(1.15e-05)]_27 chr2R:6668810-6668930 3.79e-01 120 chr3L:9424635-9424755 9.65e-01 120 chr3L:8440788-8440908 1.69e-01 48_[+3(4.52e-05)]_64 chr2L:6472572-6472692 8.61e-02 120 chr3R:11666010-11666130 3.49e-01 120 chr3L:13923471-13923591 1.00e+00 120 chr3R:24318572-24318692 9.89e-01 120 chr3L:21047140-21047260 9.99e-01 120 chr3L:14031930-14032050 2.36e-01 120 chr3R:11673989-11674109 1.76e-01 120 chr3R:28327373-28327493 8.86e-01 120 chrX:12724746-12724866 9.77e-01 120 chr2L:7544575-7544695 9.82e-01 120 chrX:13783424-13783544 9.92e-01 120 chrX:5745255-5745375 6.04e-01 120 chr3L:1794153-1794273 3.30e-02 109_[+1(7.66e-05)]_3 chr2L:2862094-2862214 8.14e-01 120 chr2R:16951865-16951985 1.00e+00 120 chr2R:21202906-21203026 9.79e-01 120 chrX:10629011-10629131 9.98e-01 120 chr2L:8415518-8415638 1.00e+00 120 chr3L:14190159-14190279 9.78e-01 120 chrX:17510279-17510399 5.83e-02 92_[+4(9.26e-06)]_20 chr3R:31793784-31793904 9.55e-01 120 chr2R:21514490-21514610 9.99e-01 120 chr3L:16657161-16657281 8.43e-01 120 chr3R:19093350-19093470 9.64e-01 120 chr3L:6495280-6495400 7.82e-01 120 chr2L:12721103-12721223 5.97e-01 120 chrX:7286524-7286644 9.82e-01 120 chr3R:14095534-14095654 1.00e+00 120 chr3R:21887647-21887767 7.64e-01 120 chr3L:11285278-11285398 1.00e+00 120 chr2L:8239793-8239913 6.11e-01 120 chr3L:1578625-1578745 9.27e-01 120 chr3R:5413096-5413216 9.99e-01 120 chr3L:14335954-14336074 9.87e-01 120 chr3L:1755580-1755700 1.99e-01 56_[+2(8.62e-05)]_56 chr3R:21420041-21420161 8.47e-01 120 chrX:13817563-13817683 9.41e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************