******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1832.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:6231931-6232051 1.0000 120 chrX:11828758-11828878 1.0000 120 chrX:10224824-10224944 1.0000 120 chr3R:4955394-4955514 1.0000 120 chr2L:21857839-21857959 1.0000 120 chr2R:18062059-18062179 1.0000 120 chrX:18636440-18636560 1.0000 120 chr3R:17814045-17814165 1.0000 120 chrX:9094085-9094205 1.0000 120 chrX:1043038-1043158 1.0000 120 chrX:18266953-18267073 1.0000 120 chr3R:8161626-8161746 1.0000 120 chrX:6669169-6669289 1.0000 120 chrX:2765593-2765713 1.0000 120 chr3L:1032320-1032440 1.0000 120 chr3L:21670068-21670188 1.0000 120 chr2R:20919874-20919994 1.0000 120 chrX:879948-880068 1.0000 120 chr3R:21559063-21559183 1.0000 120 chr3L:14298191-14298311 1.0000 120 chrX:11703234-11703354 1.0000 120 chrX:2446132-2446252 1.0000 120 chrX:12640824-12640944 1.0000 120 chr3L:19143671-19143791 1.0000 120 chrX:12649828-12649948 1.0000 120 chr2R:18355590-18355710 1.0000 120 chrX:11689691-11689811 1.0000 120 chr2R:23624691-23624811 1.0000 120 chrX:13080544-13080664 1.0000 120 chrX:582335-582455 1.0000 120 chr2R:17832366-17832486 1.0000 120 chrX:18654442-18654562 1.0000 120 chrX:21050224-21050344 1.0000 120 chr3R:29708445-29708565 1.0000 120 chrX:21283019-21283139 1.0000 120 chrX:7543730-7543850 1.0000 120 chrX:8617732-8617852 1.0000 120 chrX:5548721-5548841 1.0000 120 chr3L:6110802-6110922 1.0000 120 chr2L:7122107-7122227 1.0000 120 chr2R:8866400-8866520 1.0000 120 chr3R:17951614-17951734 1.0000 120 chrX:8801593-8801713 1.0000 120 chrX:11397558-11397678 1.0000 120 chrX:13293672-13293792 1.0000 120 chrX:4545050-4545170 1.0000 120 chr2R:10214737-10214857 1.0000 120 chr3L:10793616-10793736 1.0000 120 chrX:9513823-9513943 1.0000 120 chr3R:10615656-10615776 1.0000 120 chr3L:16206236-16206356 1.0000 120 chrX:18093803-18093923 1.0000 120 chrX:13664127-13664247 1.0000 120 chr2L:1885914-1886034 1.0000 120 chr3L:547745-547865 1.0000 120 chr3R:17556384-17556504 1.0000 120 chrX:13550915-13551035 1.0000 120 chr2L:11491352-11491472 1.0000 120 chrX:9354948-9355068 1.0000 120 chr2L:14470176-14470296 1.0000 120 chrX:18495625-18495745 1.0000 120 chr2R:13619647-13619767 1.0000 120 chrX:11528973-11529093 1.0000 120 chr3L:14356127-14356247 1.0000 120 chr3L:22843709-22843829 1.0000 120 chr3L:1369333-1369453 1.0000 120 chr2R:14035926-14036046 1.0000 120 chrX:18888165-18888285 1.0000 120 chrX:472800-472920 1.0000 120 chr2L:16619335-16619455 1.0000 120 chrX:5561754-5561874 1.0000 120 chr2L:20333212-20333332 1.0000 120 chr3R:30076618-30076738 1.0000 120 chr2R:17328481-17328601 1.0000 120 chrX:6812148-6812268 1.0000 120 chr2L:9929224-9929344 1.0000 120 chr2L:12337564-12337684 1.0000 120 chr3L:14489155-14489275 1.0000 120 chr2L:5079336-5079456 1.0000 120 chrX:15631524-15631644 1.0000 120 chr3R:22220555-22220675 1.0000 120 chr2R:9343991-9344111 1.0000 120 chrX:6889489-6889609 1.0000 120 chrX:19393557-19393677 1.0000 120 chrX:2035087-2035207 1.0000 120 chr3R:22375200-22375320 1.0000 120 chr3R:10517076-10517196 1.0000 120 chr2R:18377565-18377685 1.0000 120 chrX:13200966-13201086 1.0000 120 chrX:20230973-20231093 1.0000 120 chrX:12602338-12602458 1.0000 120 chrX:8778019-8778139 1.0000 120 chr3R:25770838-25770958 1.0000 120 chrX:10851620-10851740 1.0000 120 chr3L:16401204-16401324 1.0000 120 chr2R:20933083-20933203 1.0000 120 chr3L:15231171-15231291 1.0000 120 chr3L:10574540-10574660 1.0000 120 chr2L:11353606-11353726 1.0000 120 chr3L:2182256-2182376 1.0000 120 chrX:11017590-11017710 1.0000 120 chr3R:16683774-16683894 1.0000 120 chr2L:14051646-14051766 1.0000 120 chr2R:20596152-20596272 1.0000 120 chr2R:22797620-22797740 1.0000 120 chrX:17417551-17417671 1.0000 120 chr3L:22141934-22142054 1.0000 120 chrX:18098555-18098675 1.0000 120 chr3R:8697409-8697529 1.0000 120 chrX:5008779-5008899 1.0000 120 chrX:4139998-4140118 1.0000 120 chrX:10684064-10684184 1.0000 120 chrX:20352515-20352635 1.0000 120 chrX:8167730-8167850 1.0000 120 chr2L:1304113-1304233 1.0000 120 chr2L:4835910-4836030 1.0000 120 chrX:2062387-2062507 1.0000 120 chrX:19396757-19396877 1.0000 120 chr2L:21776217-21776337 1.0000 120 chr3R:19241820-19241940 1.0000 120 chrX:17536013-17536133 1.0000 120 chr3R:10507939-10508059 1.0000 120 chr2R:7248320-7248440 1.0000 120 chr2R:9046593-9046713 1.0000 120 chr2L:1479628-1479748 1.0000 120 chrX:2343479-2343599 1.0000 120 chrX:10382484-10382604 1.0000 120 chrX:1409689-1409809 1.0000 120 chr2L:21814580-21814700 1.0000 120 chr2R:19972771-19972891 1.0000 120 chr3L:11103507-11103627 1.0000 120 chr3R:20623127-20623247 1.0000 120 chrX:17306824-17306944 1.0000 120 chrX:3954126-3954246 1.0000 120 chr3R:18358789-18358909 1.0000 120 chr2R:8380476-8380596 1.0000 120 chrX:23008891-23009011 1.0000 120 chr3L:20757172-20757292 1.0000 120 chr3R:8300822-8300942 1.0000 120 chr3L:12470681-12470801 1.0000 120 chr3L:9688604-9688724 1.0000 120 chr3R:18537776-18537896 1.0000 120 chr3L:14468124-14468244 1.0000 120 chr3R:9105815-9105935 1.0000 120 chrX:2078179-2078299 1.0000 120 chrX:7225026-7225146 1.0000 120 chrX:17334622-17334742 1.0000 120 chr3R:15396755-15396875 1.0000 120 chr2R:8313758-8313878 1.0000 120 chr3R:15836388-15836508 1.0000 120 chrX:5160214-5160334 1.0000 120 chrX:8663325-8663445 1.0000 120 chr2L:11952565-11952685 1.0000 120 chr2R:12162328-12162448 1.0000 120 chrX:4008385-4008505 1.0000 120 chrX:11790201-11790321 1.0000 120 chr2R:8324050-8324170 1.0000 120 chrX:1407533-1407653 1.0000 120 chr3R:6878835-6878955 1.0000 120 chrX:6670485-6670605 1.0000 120 chr3L:16480933-16481053 1.0000 120 chr3R:16437133-16437253 1.0000 120 chr3R:5257707-5257827 1.0000 120 chrX:7621170-7621290 1.0000 120 chrX:16562408-16562528 1.0000 120 chr2R:22694816-22694936 1.0000 120 chr3R:5298318-5298438 1.0000 120 chr3L:20450957-20451077 1.0000 120 chr2L:11011625-11011745 1.0000 120 chr2R:22267919-22268039 1.0000 120 chrX:12590050-12590170 1.0000 120 chr2L:14133338-14133458 1.0000 120 chr3R:29537062-29537182 1.0000 120 chr3L:10517746-10517866 1.0000 120 chr2L:6330398-6330518 1.0000 120 chr3R:14561233-14561353 1.0000 120 chr2L:10771006-10771126 1.0000 120 chrX:8813536-8813656 1.0000 120 chr3L:14798979-14799099 1.0000 120 chrX:14971201-14971321 1.0000 120 chr3R:15314110-15314230 1.0000 120 chr2R:18159601-18159721 1.0000 120 chrX:5094523-5094643 1.0000 120 chr3R:9238931-9239051 1.0000 120 chr2L:15008225-15008345 1.0000 120 chrX:3737914-3738034 1.0000 120 chr2R:9585199-9585319 1.0000 120 chr2R:10796364-10796484 1.0000 120 chr3L:21344351-21344471 1.0000 120 chr3L:4582441-4582561 1.0000 120 chrX:2334134-2334254 1.0000 120 chr2L:6944277-6944397 1.0000 120 chr2L:16527478-16527598 1.0000 120 chrX:6303966-6304086 1.0000 120 chr3R:14456192-14456312 1.0000 120 chrX:9722076-9722196 1.0000 120 chrX:16798302-16798422 1.0000 120 chr2L:4455540-4455660 1.0000 120 chr3L:11558365-11558485 1.0000 120 chrX:16452093-16452213 1.0000 120 chr2L:12310129-12310249 1.0000 120 chr3L:16852957-16853077 1.0000 120 chr2R:15570322-15570442 1.0000 120 chrX:12342925-12343045 1.0000 120 chrX:6669918-6670038 1.0000 120 chr3L:14567826-14567946 1.0000 120 chrX:21116203-21116323 1.0000 120 chr3R:25248707-25248827 1.0000 120 chr3R:10854026-10854146 1.0000 120 chr3R:27642904-27643024 1.0000 120 chr3R:9530858-9530978 1.0000 120 chr2R:9144817-9144937 1.0000 120 chr2R:18176877-18176997 1.0000 120 chr2R:18174242-18174362 1.0000 120 chrX:13386908-13387028 1.0000 120 chr3R:6923884-6924004 1.0000 120 chr2R:7692966-7693086 1.0000 120 chr2R:8963769-8963889 1.0000 120 chr2R:18690702-18690822 1.0000 120 chr3R:31056656-31056776 1.0000 120 chr3L:11310467-11310587 1.0000 120 chr3R:21558033-21558153 1.0000 120 chrX:4398023-4398143 1.0000 120 chr2R:8928769-8928889 1.0000 120 chr2R:9663706-9663826 1.0000 120 chr2L:18890844-18890964 1.0000 120 chr3L:20776427-20776547 1.0000 120 chr3L:18809908-18810028 1.0000 120 chr2R:13629724-13629844 1.0000 120 chr2R:7679111-7679231 1.0000 120 chrX:18990748-18990868 1.0000 120 chrX:15243311-15243431 1.0000 120 chrX:3734918-3735038 1.0000 120 chrX:11145011-11145131 1.0000 120 chr2R:6614325-6614445 1.0000 120 chr2R:10116729-10116849 1.0000 120 chr2R:13191547-13191667 1.0000 120 chr3R:31736358-31736478 1.0000 120 chr3R:17822265-17822385 1.0000 120 chr3R:23751406-23751526 1.0000 120 chr3L:19085411-19085531 1.0000 120 chrX:4380996-4381116 1.0000 120 chrX:20445021-20445141 1.0000 120 chr3L:7621604-7621724 1.0000 120 chrX:7435723-7435843 1.0000 120 chrX:17137256-17137376 1.0000 120 chr2R:6032404-6032524 1.0000 120 chr2R:14640983-14641103 1.0000 120 chr2L:10686633-10686753 1.0000 120 chrX:19264536-19264656 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG1832/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1832.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.231 C 0.266 G 0.28 T 0.224 Background letter frequencies (from file dataset with add-one prior applied): A 0.231 C 0.266 G 0.28 T 0.224 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARAGAGA MEME-1 width = 8 sites = 118 llr = 1037 E-value = 3.0e-113 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARAGAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a38:8:a pos.-specific C ::12:::: probability G 9:6:a1a: matrix T :::::::: bits 2.2 * * 1.9 * * ** 1.7 * * ** 1.5 ** * ** Relative 1.3 ** ***** Entropy 1.1 ** ***** (12.7 bits) 0.9 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:20445021-20445141 80 1.75e-05 gcgagagaga gagagaga gacgggcagg chr2R:13191547-13191667 33 1.75e-05 ATAACCCACa gagagaga gcaggagaga chrX:3734918-3735038 65 1.75e-05 gagatgggga gagagaga ggaagctaga chr2R:7692966-7693086 113 1.75e-05 aagagagaga gagagaga chr3R:27642904-27643024 93 1.75e-05 gagaaagaaa gagagaga TTATAGTTTA chrX:16798302-16798422 72 1.75e-05 Cagacagaga gagagaga gagtgaggga chrX:9722076-9722196 74 1.75e-05 AAAagagtgt gagagaga gatggagaga chrX:14971201-14971321 53 1.75e-05 gagagagaga gagagaga gagagaggga chr2L:14133338-14133458 94 1.75e-05 GAAGGCGATA GAGAGAGA GGGGAGAGCA chrX:16562408-16562528 50 1.75e-05 ttcacagtgc gagagaga cggagagaga chr2R:8324050-8324170 40 1.75e-05 GTAAGCGCCT gagagaga aagagagagg chr2L:11952565-11952685 78 1.75e-05 AGGGAAGCGA GAGAGAGA GACGGGTAGC chrX:17334622-17334742 58 1.75e-05 GCGCTAGAGA GAGAGAGA GAGGGGTAAG chrX:7225026-7225146 67 1.75e-05 TGgagaaaga gagagaga gagagagaga chr3L:9688604-9688724 41 1.75e-05 aacggagaaa gagagaga AATACACCAA chrX:1409689-1409809 60 1.75e-05 aagtgcgaga gagagaga gCGTGGCGGC chrX:2343479-2343599 96 1.75e-05 Aagagagaga gagagaga gaaagagaga chr3R:19241820-19241940 56 1.75e-05 gagcgagaga gagagaga tagCGTTAGT chrX:19396757-19396877 68 1.75e-05 gagcgagcga gagagaga gagtgagaga chrX:20352515-20352635 101 1.75e-05 gagagagaga gagagaga gagagagaga chrX:10684064-10684184 54 1.75e-05 gatagagaga gagagaga gggagaacgc chr2L:14051646-14051766 23 1.75e-05 CAGCACCGAa gagagaga tggcccgaga chrX:11017590-11017710 19 1.75e-05 Aagagagaga gagagaga gagagagagG chr2R:20933083-20933203 65 1.75e-05 gagtgcgaga gagagaga gagaagcgaa chrX:20230973-20231093 74 1.75e-05 gagggagaga gagagaga gagagaaagg chrX:19393557-19393677 72 1.75e-05 TCTCTGTAAa gagagaga gagcgagagc chr2R:9343991-9344111 9 1.75e-05 AGTGGAGC GAGAGAGA TGGGCACATG chr3R:22220555-22220675 54 1.75e-05 gagagagaga gagagaga gatagggata chrX:6812148-6812268 71 1.75e-05 GCgagtgagt gagagaga tagagtgtgt chrX:5561754-5561874 102 1.75e-05 GTGGTCGTGC gagagaga aagagagcga chr2L:16619335-16619455 37 1.75e-05 gctagagaga gagagaga gagGGCAAGA chrX:18888165-18888285 78 1.75e-05 ggaggagagg gagagaga gCAAAGCAAA chr3L:14356127-14356247 67 1.75e-05 AGCACAGTGC GAGAGAGA GGGAGCTAGC chr2R:13619647-13619767 66 1.75e-05 gcgggaggga gagagaga cgggcataaa chr2L:14470176-14470296 33 1.75e-05 GAGCGAAAGA GAGAGAGA AATTCCCAGC chrX:9354948-9355068 36 1.75e-05 GCGAGGGGCA GAGAGAGA GGGGGCGGGA chr2L:1885914-1886034 79 1.75e-05 GTCTAGAAGC GAGAGAGA CGGATGTATT chrX:13664127-13664247 86 1.75e-05 tagagagaga gagagaga gagagagcga chr3L:16206236-16206356 48 1.75e-05 cggcagcaga gagagaga gagagatggg chr3R:10615656-10615776 63 1.75e-05 ACTGGCGAGC GAGAGAGA CGGGGCGATT chr3L:10793616-10793736 58 1.75e-05 gagagagaga gagagaga gagagagaga chrX:7543730-7543850 17 1.75e-05 ACCACCAATG GAGAGAGA GATGGCCTTA chrX:582335-582455 70 1.75e-05 CTTCTAGAGC GAGAGAGA TAGACAGCCA chrX:879948-880068 68 1.75e-05 aagagagacg gagagaga cgggggagcg chr2R:20919874-20919994 83 1.75e-05 gagagagaga gagagaga gagaaggcga chr3L:1032320-1032440 35 1.75e-05 AGCTGAGTGA GAGAGAGA TGGGCATATG chrX:2765593-2765713 88 1.75e-05 gagtgggaga gagagaga gagagagacg chrX:9094085-9094205 33 1.75e-05 GATCGATGTA GAGAGAGA CGGAGCGAGG chr3R:4955394-4955514 71 1.75e-05 gagagagaga gagagaga gCTACTGAGG chrX:11828758-11828878 85 1.75e-05 gggagagaga gagagaga gaacggttga chrX:6231931-6232051 62 1.75e-05 gagatagaga gagagaga gagcgagcga chrX:7435723-7435843 66 3.19e-05 CTGTTTGTGT GAAAGAGA GGGGTATAAC chr3L:7621604-7621724 86 3.19e-05 gatggggatg GAAAGAGA GGGCACGATA chr3L:18809908-18810028 53 3.19e-05 ATTCGTGGGA GAAAGAGA CGGATGGCGG chrX:7621170-7621290 81 3.19e-05 AGCGTGGAGT GAAAGAGA GCGGGCTAGC chrX:11790201-11790321 98 3.19e-05 GCAAAACAGC GAAAGAGA CGGCAACAGC chrX:8663325-8663445 73 3.19e-05 GACGGCGCGT GAAAGAGA AAGGGCGATG chr3R:9105815-9105935 18 3.19e-05 GAATGGCAAT GAAAGAGA CGGGAATAGG chr3L:20757172-20757292 76 3.19e-05 CAAATGAAAG GAAAGAGA CGGGTGACGG chr2L:21814580-21814700 56 3.19e-05 ATGGATGGGC GAAAGAGA CGGAAGGAGG chr2L:1479628-1479748 53 3.19e-05 CCAGCGGTGC GAAAGAGA CAGCTGGTCT chrX:4139998-4140118 94 3.19e-05 gggggtgagc gaaagaga tagaCAACGC chr3R:16683774-16683894 64 3.19e-05 CCGTTCGAGG GAAAGAGA GGACAGATGG chrX:13200966-13201086 71 3.19e-05 ACATCGAATG GAAAGAGA CAGAGGAAGG chr3R:22375200-22375320 59 3.19e-05 CAAGAGAAAG GAAAGAGA AAGGGAGCTA chrX:472800-472920 61 3.19e-05 CCTGGAGACA GAAAGAGA TGGCATCATT chr2R:14035926-14036046 42 3.19e-05 tacagCCAGC GAAAGAGA CGGCGAGTGT chrX:13293672-13293792 39 3.19e-05 CTTCgaaaga gaaagaga gcgcgatcgc chr3R:17951614-17951734 24 3.19e-05 ACGGTGGTCC GAAAGAGA TGGATACTTT chr3L:14298191-14298311 15 3.19e-05 TCAATGTCAA GAAAGAGA TAGCGCTTGG chr3L:21670068-21670188 66 3.19e-05 TATTCGGATA GAAAGAGA AGACCTAGAG chrX:18266953-18267073 63 3.19e-05 AGCAGGGCGC GAAAGAGA GGGCAAGTGA chrX:18636440-18636560 73 3.19e-05 AAGCGAAAGG GAAAGAGA GGGGCCGAGC chr2L:21857839-21857959 73 3.19e-05 TTACAAGCGG GAAAGAGA CGGGCGATGT chrX:4398023-4398143 79 5.21e-05 tggagggagc gagcgaga gggatgggca chr3R:14456192-14456312 40 5.21e-05 ACGCACATGA GAGCGAGA CAGCGCTATC chrX:8813536-8813656 86 5.21e-05 AACCCACACA GAGCGAGA AGGATACCAA chrX:4008385-4008505 72 5.21e-05 TGgagagtgc gagcgaga gagtgagcga chr2R:19972771-19972891 66 5.21e-05 CAGGAGGTGT GAGCGAGA CGGGAGCTGA chr3L:1369333-1369453 48 5.21e-05 CAGGGCGAGC GAGCGAGA TAGCTGCTGT chr2L:11491352-11491472 26 5.21e-05 GAGTGAGTGC GAGCGAGA TGGAGGAAGG chrX:21283019-21283139 53 5.21e-05 CCTCCAGTGT GAGCGAGA GGGATGACGA chr3R:29708445-29708565 51 5.21e-05 CAATGCGAGT GAGCGAGA GGGCAGGGGG chr3L:19143671-19143791 47 5.21e-05 AAGCGGGAGC GAGCGAGA TGGGGATGGA chr3R:17814045-17814165 44 5.21e-05 AAAGCGGTGC GAGCGAGA GGCCACCACG chr3R:9530858-9530978 12 8.32e-05 TCCGATTGGC GAACGAGA CAATCGCCGC chrX:16452093-16452213 50 8.32e-05 TGATGTGCGA GAACGAGA TAATCCGAGA chr3L:14489155-14489275 33 8.32e-05 GTTGGCACAA GAACGAGA CGGTGGAAGT chr2R:14640983-14641103 72 9.98e-05 GTGCGAGCGG GACAGAGA TGGCGAATGG chr3R:17822265-17822385 50 9.98e-05 GAGACAGGTT GACAGAGA GGAAAAGAGA chrX:15243311-15243431 95 9.98e-05 GGGAGAGGGG GACAGAGA ATAGGCCGCG chr2L:12310129-12310249 104 9.98e-05 GCGACAGAGC GACAGAGA CGGAGtgat chr3L:22843709-22843829 57 9.98e-05 CTGCGAGAGC GACAGAGA CAGCCACTGG chrX:8801593-8801713 71 9.98e-05 cagacacgga gacagaga cggcgacagg chrX:10382484-10382604 111 1.12e-04 TTTCTACCGC AAAAGAGA CG chr2L:1304113-1304233 63 1.12e-04 GCCCACGAGG AAAAGAGA GGGAAGGCGG chr2R:20596152-20596272 36 1.12e-04 accgaatcca aaaagaga accCTGTCTT chr3L:6110802-6110922 100 1.12e-04 TGCGCGGTCA AAAAGAGA CGGAGTCAGG chr2R:18377565-18377685 4 1.33e-04 aga gagaggga gacagagCGG chr2R:18355590-18355710 111 1.50e-04 GGTTTGGGGA GAGAGTGA GA chr3L:21344351-21344471 85 1.70e-04 GCCGAGATGC GAGAGCGA ATTCTGGCCG chr2L:12337564-12337684 64 1.70e-04 CGCCGACAGT GAGAGCGA GCGGGACGGC chr2R:10796364-10796484 91 1.88e-04 GCAAACGTGC GAAAGGGA CGAAAGAGGC chr3L:14468124-14468244 95 1.88e-04 ATGCTAGCCA GAAAGGGA AAACAACCGT chrX:13080544-13080664 26 2.02e-04 AAACGTATCT GAAAGTGA GTGAAAGAGG chrX:2446132-2446252 112 2.02e-04 GTTACCAagc gaaagtga c chr3R:25770838-25770958 63 2.18e-04 GGGCAATGGA GAAAGCGA GACGGAGACA chrX:3954126-3954246 92 2.68e-04 CTAAATCCCG AAACGAGA TCGAACGCGG chrX:15631524-15631644 4 2.81e-04 AGC AACAGAGA TTCCGTGTAG chr3L:547745-547865 14 3.06e-04 CGACCACGTC GAGCGGGA TAGCATGCGC chrX:18093803-18093923 71 3.06e-04 GCAGCAGAAC GAGCGGGA GAGCAAGCTA chrX:18654442-18654562 45 3.06e-04 ATGCCAATGA GAGCGGGA CAGAGCAGGG chr2L:21776217-21776337 110 3.49e-04 CGCCACATGT GAGCGCGA TGA chr3L:20776427-20776547 26 4.88e-04 CTGGCCGGCC AAGAGCGA GTTGGGAGCC chrX:6669169-6669289 65 5.34e-04 ctGATCACTG AAAAGTGA TCGTTCGTTG chrX:2062387-2062507 74 6.23e-04 GCTCGCTTCC AAGCGTGA GCCCAAACCG chr2L:16527478-16527598 109 6.99e-04 GCGGATGAGG AAACGGGA TTCG chr2L:4455540-4455660 78 7.16e-04 CTTGTGGTTA AACAGGGA GAACAGCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:20445021-20445141 1.8e-05 79_[+1]_33 chr2R:13191547-13191667 1.8e-05 32_[+1]_80 chrX:3734918-3735038 1.8e-05 64_[+1]_48 chr2R:7692966-7693086 1.8e-05 112_[+1] chr3R:27642904-27643024 1.8e-05 92_[+1]_20 chrX:16798302-16798422 1.8e-05 71_[+1]_41 chrX:9722076-9722196 1.8e-05 73_[+1]_39 chrX:14971201-14971321 1.8e-05 52_[+1]_60 chr2L:14133338-14133458 1.8e-05 93_[+1]_19 chrX:16562408-16562528 1.8e-05 49_[+1]_63 chr2R:8324050-8324170 1.8e-05 39_[+1]_73 chr2L:11952565-11952685 1.8e-05 77_[+1]_35 chrX:17334622-17334742 1.8e-05 57_[+1]_55 chrX:7225026-7225146 1.8e-05 66_[+1]_46 chr3L:9688604-9688724 1.8e-05 40_[+1]_72 chrX:1409689-1409809 1.8e-05 59_[+1]_53 chrX:2343479-2343599 1.8e-05 95_[+1]_17 chr3R:19241820-19241940 1.8e-05 55_[+1]_57 chrX:19396757-19396877 1.8e-05 67_[+1]_45 chrX:20352515-20352635 1.8e-05 100_[+1]_12 chrX:10684064-10684184 1.8e-05 53_[+1]_59 chr2L:14051646-14051766 1.8e-05 22_[+1]_90 chrX:11017590-11017710 1.8e-05 18_[+1]_94 chr2R:20933083-20933203 1.8e-05 64_[+1]_48 chrX:20230973-20231093 1.8e-05 73_[+1]_39 chrX:19393557-19393677 1.8e-05 71_[+1]_41 chr2R:9343991-9344111 1.8e-05 8_[+1]_104 chr3R:22220555-22220675 1.8e-05 53_[+1]_59 chrX:6812148-6812268 1.8e-05 70_[+1]_42 chrX:5561754-5561874 1.8e-05 101_[+1]_11 chr2L:16619335-16619455 1.8e-05 36_[+1]_76 chrX:18888165-18888285 1.8e-05 77_[+1]_35 chr3L:14356127-14356247 1.8e-05 66_[+1]_46 chr2R:13619647-13619767 1.8e-05 65_[+1]_47 chr2L:14470176-14470296 1.8e-05 32_[+1]_80 chrX:9354948-9355068 1.8e-05 35_[+1]_77 chr2L:1885914-1886034 1.8e-05 78_[+1]_34 chrX:13664127-13664247 1.8e-05 85_[+1]_27 chr3L:16206236-16206356 1.8e-05 47_[+1]_65 chr3R:10615656-10615776 1.8e-05 62_[+1]_50 chr3L:10793616-10793736 1.8e-05 57_[+1]_55 chrX:7543730-7543850 1.8e-05 16_[+1]_96 chrX:582335-582455 1.8e-05 69_[+1]_43 chrX:879948-880068 1.8e-05 67_[+1]_45 chr2R:20919874-20919994 1.8e-05 82_[+1]_30 chr3L:1032320-1032440 1.8e-05 34_[+1]_78 chrX:2765593-2765713 1.8e-05 87_[+1]_25 chrX:9094085-9094205 1.8e-05 32_[+1]_80 chr3R:4955394-4955514 1.8e-05 70_[+1]_42 chrX:11828758-11828878 1.8e-05 84_[+1]_28 chrX:6231931-6232051 1.8e-05 61_[+1]_51 chrX:7435723-7435843 3.2e-05 65_[+1]_47 chr3L:7621604-7621724 3.2e-05 85_[+1]_27 chr3L:18809908-18810028 3.2e-05 52_[+1]_60 chrX:7621170-7621290 3.2e-05 80_[+1]_32 chrX:11790201-11790321 3.2e-05 97_[+1]_15 chrX:8663325-8663445 3.2e-05 72_[+1]_40 chr3R:9105815-9105935 3.2e-05 17_[+1]_95 chr3L:20757172-20757292 3.2e-05 75_[+1]_37 chr2L:21814580-21814700 3.2e-05 55_[+1]_57 chr2L:1479628-1479748 3.2e-05 52_[+1]_60 chrX:4139998-4140118 3.2e-05 93_[+1]_19 chr3R:16683774-16683894 3.2e-05 63_[+1]_49 chrX:13200966-13201086 3.2e-05 70_[+1]_42 chr3R:22375200-22375320 3.2e-05 58_[+1]_54 chrX:472800-472920 3.2e-05 60_[+1]_52 chr2R:14035926-14036046 3.2e-05 41_[+1]_71 chrX:13293672-13293792 3.2e-05 38_[+1]_74 chr3R:17951614-17951734 3.2e-05 23_[+1]_89 chr3L:14298191-14298311 3.2e-05 14_[+1]_98 chr3L:21670068-21670188 3.2e-05 65_[+1]_47 chrX:18266953-18267073 3.2e-05 62_[+1]_50 chrX:18636440-18636560 3.2e-05 72_[+1]_40 chr2L:21857839-21857959 3.2e-05 72_[+1]_40 chrX:4398023-4398143 5.2e-05 78_[+1]_34 chr3R:14456192-14456312 5.2e-05 39_[+1]_73 chrX:8813536-8813656 5.2e-05 85_[+1]_27 chrX:4008385-4008505 5.2e-05 71_[+1]_41 chr2R:19972771-19972891 5.2e-05 65_[+1]_47 chr3L:1369333-1369453 5.2e-05 47_[+1]_65 chr2L:11491352-11491472 5.2e-05 25_[+1]_87 chrX:21283019-21283139 5.2e-05 52_[+1]_60 chr3R:29708445-29708565 5.2e-05 50_[+1]_62 chr3L:19143671-19143791 5.2e-05 46_[+1]_66 chr3R:17814045-17814165 5.2e-05 43_[+1]_69 chr3R:9530858-9530978 8.3e-05 11_[+1]_101 chrX:16452093-16452213 8.3e-05 49_[+1]_63 chr3L:14489155-14489275 8.3e-05 32_[+1]_80 chr2R:14640983-14641103 0.0001 71_[+1]_41 chr3R:17822265-17822385 0.0001 49_[+1]_63 chrX:15243311-15243431 0.0001 94_[+1]_18 chr2L:12310129-12310249 0.0001 103_[+1]_9 chr3L:22843709-22843829 0.0001 56_[+1]_56 chrX:8801593-8801713 0.0001 70_[+1]_42 chrX:10382484-10382604 0.00011 110_[+1]_2 chr2L:1304113-1304233 0.00011 62_[+1]_50 chr2R:20596152-20596272 0.00011 35_[+1]_77 chr3L:6110802-6110922 0.00011 99_[+1]_13 chr2R:18377565-18377685 0.00013 3_[+1]_109 chr2R:18355590-18355710 0.00015 110_[+1]_2 chr3L:21344351-21344471 0.00017 84_[+1]_28 chr2L:12337564-12337684 0.00017 63_[+1]_49 chr2R:10796364-10796484 0.00019 90_[+1]_22 chr3L:14468124-14468244 0.00019 94_[+1]_18 chrX:13080544-13080664 0.0002 25_[+1]_87 chrX:2446132-2446252 0.0002 111_[+1]_1 chr3R:25770838-25770958 0.00022 62_[+1]_50 chrX:3954126-3954246 0.00027 91_[+1]_21 chrX:15631524-15631644 0.00028 3_[+1]_109 chr3L:547745-547865 0.00031 13_[+1]_99 chrX:18093803-18093923 0.00031 70_[+1]_42 chrX:18654442-18654562 0.00031 44_[+1]_68 chr2L:21776217-21776337 0.00035 109_[+1]_3 chr3L:20776427-20776547 0.00049 25_[+1]_87 chrX:6669169-6669289 0.00053 64_[+1]_48 chrX:2062387-2062507 0.00062 73_[+1]_39 chr2L:16527478-16527598 0.0007 108_[+1]_4 chr2L:4455540-4455660 0.00072 77_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARAGAGA width=8 seqs=118 chrX:20445021-20445141 ( 80) GAGAGAGA 1 chr2R:13191547-13191667 ( 33) GAGAGAGA 1 chrX:3734918-3735038 ( 65) GAGAGAGA 1 chr2R:7692966-7693086 ( 113) GAGAGAGA 1 chr3R:27642904-27643024 ( 93) GAGAGAGA 1 chrX:16798302-16798422 ( 72) GAGAGAGA 1 chrX:9722076-9722196 ( 74) GAGAGAGA 1 chrX:14971201-14971321 ( 53) GAGAGAGA 1 chr2L:14133338-14133458 ( 94) GAGAGAGA 1 chrX:16562408-16562528 ( 50) GAGAGAGA 1 chr2R:8324050-8324170 ( 40) GAGAGAGA 1 chr2L:11952565-11952685 ( 78) GAGAGAGA 1 chrX:17334622-17334742 ( 58) GAGAGAGA 1 chrX:7225026-7225146 ( 67) GAGAGAGA 1 chr3L:9688604-9688724 ( 41) GAGAGAGA 1 chrX:1409689-1409809 ( 60) GAGAGAGA 1 chrX:2343479-2343599 ( 96) GAGAGAGA 1 chr3R:19241820-19241940 ( 56) GAGAGAGA 1 chrX:19396757-19396877 ( 68) GAGAGAGA 1 chrX:20352515-20352635 ( 101) GAGAGAGA 1 chrX:10684064-10684184 ( 54) GAGAGAGA 1 chr2L:14051646-14051766 ( 23) GAGAGAGA 1 chrX:11017590-11017710 ( 19) GAGAGAGA 1 chr2R:20933083-20933203 ( 65) GAGAGAGA 1 chrX:20230973-20231093 ( 74) GAGAGAGA 1 chrX:19393557-19393677 ( 72) GAGAGAGA 1 chr2R:9343991-9344111 ( 9) GAGAGAGA 1 chr3R:22220555-22220675 ( 54) GAGAGAGA 1 chrX:6812148-6812268 ( 71) GAGAGAGA 1 chrX:5561754-5561874 ( 102) GAGAGAGA 1 chr2L:16619335-16619455 ( 37) GAGAGAGA 1 chrX:18888165-18888285 ( 78) GAGAGAGA 1 chr3L:14356127-14356247 ( 67) GAGAGAGA 1 chr2R:13619647-13619767 ( 66) GAGAGAGA 1 chr2L:14470176-14470296 ( 33) GAGAGAGA 1 chrX:9354948-9355068 ( 36) GAGAGAGA 1 chr2L:1885914-1886034 ( 79) GAGAGAGA 1 chrX:13664127-13664247 ( 86) GAGAGAGA 1 chr3L:16206236-16206356 ( 48) GAGAGAGA 1 chr3R:10615656-10615776 ( 63) GAGAGAGA 1 chr3L:10793616-10793736 ( 58) GAGAGAGA 1 chrX:7543730-7543850 ( 17) GAGAGAGA 1 chrX:582335-582455 ( 70) GAGAGAGA 1 chrX:879948-880068 ( 68) GAGAGAGA 1 chr2R:20919874-20919994 ( 83) GAGAGAGA 1 chr3L:1032320-1032440 ( 35) GAGAGAGA 1 chrX:2765593-2765713 ( 88) GAGAGAGA 1 chrX:9094085-9094205 ( 33) GAGAGAGA 1 chr3R:4955394-4955514 ( 71) GAGAGAGA 1 chrX:11828758-11828878 ( 85) GAGAGAGA 1 chrX:6231931-6232051 ( 62) GAGAGAGA 1 chrX:7435723-7435843 ( 66) GAAAGAGA 1 chr3L:7621604-7621724 ( 86) GAAAGAGA 1 chr3L:18809908-18810028 ( 53) GAAAGAGA 1 chrX:7621170-7621290 ( 81) GAAAGAGA 1 chrX:11790201-11790321 ( 98) GAAAGAGA 1 chrX:8663325-8663445 ( 73) GAAAGAGA 1 chr3R:9105815-9105935 ( 18) GAAAGAGA 1 chr3L:20757172-20757292 ( 76) GAAAGAGA 1 chr2L:21814580-21814700 ( 56) GAAAGAGA 1 chr2L:1479628-1479748 ( 53) GAAAGAGA 1 chrX:4139998-4140118 ( 94) GAAAGAGA 1 chr3R:16683774-16683894 ( 64) GAAAGAGA 1 chrX:13200966-13201086 ( 71) GAAAGAGA 1 chr3R:22375200-22375320 ( 59) GAAAGAGA 1 chrX:472800-472920 ( 61) GAAAGAGA 1 chr2R:14035926-14036046 ( 42) GAAAGAGA 1 chrX:13293672-13293792 ( 39) GAAAGAGA 1 chr3R:17951614-17951734 ( 24) GAAAGAGA 1 chr3L:14298191-14298311 ( 15) GAAAGAGA 1 chr3L:21670068-21670188 ( 66) GAAAGAGA 1 chrX:18266953-18267073 ( 63) GAAAGAGA 1 chrX:18636440-18636560 ( 73) GAAAGAGA 1 chr2L:21857839-21857959 ( 73) GAAAGAGA 1 chrX:4398023-4398143 ( 79) GAGCGAGA 1 chr3R:14456192-14456312 ( 40) GAGCGAGA 1 chrX:8813536-8813656 ( 86) GAGCGAGA 1 chrX:4008385-4008505 ( 72) GAGCGAGA 1 chr2R:19972771-19972891 ( 66) GAGCGAGA 1 chr3L:1369333-1369453 ( 48) GAGCGAGA 1 chr2L:11491352-11491472 ( 26) GAGCGAGA 1 chrX:21283019-21283139 ( 53) GAGCGAGA 1 chr3R:29708445-29708565 ( 51) GAGCGAGA 1 chr3L:19143671-19143791 ( 47) GAGCGAGA 1 chr3R:17814045-17814165 ( 44) GAGCGAGA 1 chr3R:9530858-9530978 ( 12) GAACGAGA 1 chrX:16452093-16452213 ( 50) GAACGAGA 1 chr3L:14489155-14489275 ( 33) GAACGAGA 1 chr2R:14640983-14641103 ( 72) GACAGAGA 1 chr3R:17822265-17822385 ( 50) GACAGAGA 1 chrX:15243311-15243431 ( 95) GACAGAGA 1 chr2L:12310129-12310249 ( 104) GACAGAGA 1 chr3L:22843709-22843829 ( 57) GACAGAGA 1 chrX:8801593-8801713 ( 71) GACAGAGA 1 chrX:10382484-10382604 ( 111) AAAAGAGA 1 chr2L:1304113-1304233 ( 63) AAAAGAGA 1 chr2R:20596152-20596272 ( 36) AAAAGAGA 1 chr3L:6110802-6110922 ( 100) AAAAGAGA 1 chr2R:18377565-18377685 ( 4) GAGAGGGA 1 chr2R:18355590-18355710 ( 111) GAGAGTGA 1 chr3L:21344351-21344471 ( 85) GAGAGCGA 1 chr2L:12337564-12337684 ( 64) GAGAGCGA 1 chr2R:10796364-10796484 ( 91) GAAAGGGA 1 chr3L:14468124-14468244 ( 95) GAAAGGGA 1 chrX:13080544-13080664 ( 26) GAAAGTGA 1 chrX:2446132-2446252 ( 112) GAAAGTGA 1 chr3R:25770838-25770958 ( 63) GAAAGCGA 1 chrX:3954126-3954246 ( 92) AAACGAGA 1 chrX:15631524-15631644 ( 4) AACAGAGA 1 chr3L:547745-547865 ( 14) GAGCGGGA 1 chrX:18093803-18093923 ( 71) GAGCGGGA 1 chrX:18654442-18654562 ( 45) GAGCGGGA 1 chr2L:21776217-21776337 ( 110) GAGCGCGA 1 chr3L:20776427-20776547 ( 26) AAGAGCGA 1 chrX:6669169-6669289 ( 65) AAAAGTGA 1 chrX:2062387-2062507 ( 74) AAGCGTGA 1 chr2L:16527478-16527598 ( 109) AAACGGGA 1 chr2L:4455540-4455660 ( 78) AACAGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.80223 E= 3.0e-113 -131 -1353 170 -1353 211 -1353 -1353 -1353 48 -197 113 -1353 183 -58 -1353 -1353 -1353 -1353 184 -1353 188 -265 -204 -240 -1353 -1353 184 -1353 211 -1353 -1353 -1353 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 3.0e-113 0.093220 0.000000 0.906780 0.000000 1.000000 0.000000 0.000000 0.000000 0.322034 0.067797 0.610169 0.000000 0.822034 0.177966 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.847458 0.042373 0.067797 0.042373 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-1 regular expression -------------------------------------------------------------------------------- GA[GA]AGAGA -------------------------------------------------------------------------------- Time 7.33 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTYTC MEME-2 width = 8 sites = 98 llr = 915 E-value = 3.0e-105 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTYTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a1a:6:a probability G 1:::2::: matrix T 9:9:83a: bits 2.2 * 1.9 ** ** 1.7 **** ** 1.5 **** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (13.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19264536-19264656 6 1.26e-05 ctctc tctctctc tctctctctt chrX:4380996-4381116 4 1.26e-05 CTT TCTCTCTC TAAGAAGCAG chr2R:13629724-13629844 89 1.26e-05 tctctctctt tctctctc tGCTCCTACA chr3R:21558033-21558153 60 1.26e-05 gcactctctc tctctctc tttcgtcggg chr3R:6923884-6924004 35 1.26e-05 GGTATGGGCC TCTCTCTC TTTTGCCACC chrX:6669918-6670038 33 1.26e-05 TCGAActctc tctctctc gccctctctg chrX:12342925-12343045 36 1.26e-05 AGTCTTCAAc tctctctc tctttctctt chr3L:4582441-4582561 14 1.26e-05 GCATTGGctc tctctctc tcacacgcac chrX:5094523-5094643 71 1.26e-05 TCAGCGACTA TCTCTCTC CTTGCCGCCG chr3R:15314110-15314230 35 1.26e-05 tgtctctctc tctctctc tctctctatc chr3L:10517746-10517866 44 1.26e-05 tcgcgccctc tctctctc cctctctcgc chr2R:22267919-22268039 55 1.26e-05 CAGCCATCCC TCTCTCTC TATCCGCATC chrX:6670485-6670605 32 1.26e-05 tctctctctc tctctctc tctctcgctc chrX:5160214-5160334 13 1.26e-05 AAGAGCGGtc tctctctc tctctctctc chr3R:8300822-8300942 104 1.26e-05 gctgtctctt tctctctc cctcACGGA chr2R:8380476-8380596 14 1.26e-05 gctctctctc tctctctc tctcactGGC chr2L:21776217-21776337 34 1.26e-05 tctctctctc tctctctc CGTGTCCTGC chrX:2062387-2062507 34 1.26e-05 CGGTCGGTCC TCTCTCTC TGTCTCTGAA chrX:5008779-5008899 40 1.26e-05 Cctctctctc tctctctc tctctctcac chr3L:2182256-2182376 49 1.26e-05 AATTTCCctc tctctctc tctctctctc chr3L:10574540-10574660 66 1.26e-05 GGTGTCGCCA TCTCTCTC TGCCGCCAAT chrX:19393557-19393677 58 1.26e-05 ACTCTCTCCC TCTCTCTC TGTAAagaga chr2L:9929224-9929344 65 1.26e-05 ttgtactctg tctctctc cctctctctc chrX:11528973-11529093 15 1.26e-05 CGtctctctc tctctctc tctctggcac chrX:13550915-13551035 56 1.26e-05 TCAGCGGTCG TCTCTCTC TTTTCCCCCG chr3R:17556384-17556504 85 1.26e-05 tctctctctc tctctctc tctttctacc chrX:9513823-9513943 49 1.26e-05 TATAGCCGtc tctctctc tctccctctc chrX:11397558-11397678 105 1.26e-05 tctatatcta tctctctc tatctctg chr2L:7122107-7122227 24 1.26e-05 CGtctctctc tctctctc tctACGGTTC chrX:5548721-5548841 24 1.26e-05 CATTCTTCCG TCTCTCTC GCTACCGCTG chrX:11689691-11689811 24 1.26e-05 TTTGTCTTTG TCTCTCTC TGCGCTCTCT chrX:12649828-12649948 94 1.26e-05 TTTCTCTCTC TCTCTCTC TCTCTCTGTC chrX:12640824-12640944 48 1.26e-05 tctctctttc tctctctc tctctctctg chrX:11703234-11703354 22 1.26e-05 tctctccctc tctctctc tctgtctctc chr3R:21559063-21559183 59 1.26e-05 CCTTTCTCGC TCTCTCTC TGCCTCTCTC chrX:6669169-6669289 34 1.26e-05 actctgtctc tctctctc tctctgtctt chrX:1043038-1043158 28 1.26e-05 tctctctgta tctctctc tTGTTCGCAT chr2R:18062059-18062179 40 1.26e-05 tctctatctc tctctctc tctctctctc chrX:10224824-10224944 24 1.26e-05 ACGctctctc tctctctc taacaccgtt chr2L:18890844-18890964 93 2.32e-05 ATTGCAGCCC TCTCTTTC CACTTTCATC chr2R:9663706-9663826 90 2.32e-05 GTAGCTGCCT TCTCTTTC GGCCTAGTGC chrX:2334134-2334254 80 2.32e-05 tcagtctctg tctctttc tcgctcactc chrX:3737914-3738034 16 2.32e-05 GCTATGTCCC TCTCTTTC GCGCCACAAG chr3R:29537062-29537182 93 2.32e-05 CAGCCGGTCG TCTCTTTC GCGTAGCGGC chr3L:16480933-16481053 98 2.32e-05 CCTGCGCCTG TCTCTTTC CATTTGGCTA chr3R:15396755-15396875 40 2.32e-05 GAACACGCCA TCTCTTTC CCTTGACATA chrX:2078179-2078299 65 2.32e-05 CTGCCTTTCC TCTCTTTC CGGTGCTCTT chr3L:14468124-14468244 54 2.32e-05 AATAGCCCCA TCTCTTTC TTAATATATT chr3R:18358789-18358909 23 2.32e-05 GCTCGTTCCA TCTCTTTC TAGGCTGTGA chrX:10382484-10382604 82 2.32e-05 CATGCATGTG TCTCTTTC ATTTTCAGGT chr3R:10507939-10508059 64 2.32e-05 tcgccaactc tctctttc tcGCAAGTGT chrX:17536013-17536133 98 2.32e-05 ACGCATGTTG TCTCTTTC GCCCAGCATG chr3R:8697409-8697529 17 2.32e-05 TCGCGGACTC TCTCTTTC CCACTCTCTC chr3L:22141934-22142054 4 2.32e-05 GCC TCTCTTTC GCTTTATTTC chrX:17417551-17417671 112 2.32e-05 TATCGCCCTG TCTCTTTC G chr3L:15231171-15231291 71 2.32e-05 CAACGCTTCG TCTCTTTC GCACACGGTT chrX:8778019-8778139 109 2.32e-05 GTGTTGGCCA TCTCTTTC TATG chr3R:10517076-10517196 30 2.32e-05 GGGCTGGCCG TCTCTttc ttttttgtga chrX:6889489-6889609 84 2.32e-05 CCTAAGCCTG TCTCTTTC ACGCCCGCGT chr3R:30076618-30076738 79 2.32e-05 CACCCTGCCG TCTCTTTC GCACATCCCC chrX:8617732-8617852 63 2.32e-05 CATATGGCCG TCTCTTTC GCGGTCCCTC chr3L:14298191-14298311 107 2.32e-05 cctctcgccc tctctttc ttctca chr3R:8161626-8161746 38 2.32e-05 TGTAGCCCCG TCTCTTTC GCGGGGCCTG chrX:11145011-11145131 40 3.90e-05 GCTATTGCGC TCTCGCTC GCTCCGAGCA chr3L:11310467-11310587 106 3.90e-05 CTACctcctg tctcgctc tttggtc chr2R:18690702-18690822 50 3.90e-05 AGTCGCTCCC TCTCGCTC TGCGCTGGAA chrX:13386908-13387028 69 3.90e-05 TCGCACCCCG TCTCGCTC GCTCTCCCGA chrX:6303966-6304086 83 3.90e-05 CCATCTGCTG TCTCGCTC CCTCGCGGAA chrX:17306824-17306944 52 3.90e-05 TACGCCGCCG TCTCGCTC ACTCCCGTCA chrX:2035087-2035207 52 3.90e-05 CTGCACACTC TCTCGCTC GCTCTCActg chr2L:5079336-5079456 46 3.90e-05 tcccttgcac tctcgctc ATGCTAGCCC chr2R:17328481-17328601 6 3.90e-05 CGCCA TCTCGCTC GCACCCACCA chrX:18495625-18495745 39 3.90e-05 CATCGCGCTA TCTCGCTC TTATTCGCTT chrX:4545050-4545170 104 3.90e-05 TACACTTGCc tctcgctc tttctctct chr2R:8866400-8866520 62 3.90e-05 GCTCGTTCTG TCTCGCTC TGCTATTGCT chrX:18654442-18654562 80 3.90e-05 CGATAGGCTA TCTCGCTC AGATTGGGAG chr2R:23624691-23624811 74 3.90e-05 tcgctcgctg tctcgctc gctcgcatcg chr2R:8313758-8313878 55 6.72e-05 GGTCCTTCGT TCCCTCTC CCTCCCACCG chrX:3954126-3954246 75 6.72e-05 CAACCGTCTG TCCCTCTC TAAATCCCGA chrX:6812148-6812268 33 6.72e-05 AAAATGTATT TCCCTCTC TGTTTGTTTC chr2R:10214737-10214857 34 6.72e-05 ACTCGTTCGC TCCCTCTC GCACCCTCTG chrX:1407533-1407653 27 7.98e-05 GCTACAGCTG TCCCTTTC CCACGCACTG chr3R:18537776-18537896 41 7.98e-05 GCTATACCCG TCCCTTTC ACTGTCTGCT chr2R:17832366-17832486 35 7.98e-05 ACTGTGGCCA TCCCTTTC TGGCGCCCGC chr2R:14640983-14641103 20 9.56e-05 TTGCTATCCT GCTCTCTC ACACGCAGCG chrX:10851620-10851740 64 1.09e-04 CCATACTCCA TCTCTGTC GTTTTCGCTA chrX:12602338-12602458 64 1.09e-04 TCTACCCCCC TCTCTGTC GCACCCACTG chrX:15243311-15243431 21 1.22e-04 ACTATTGCCG GCTCTTTC TGGGCCGTGT chrX:8167730-8167850 53 1.22e-04 TGCCTGTCCT GCTCTTTC ACAAGCGGTA chrX:15631524-15631644 21 1.22e-04 ATTCCGTGTA GCTCTTTC TCCCTTCGCC chrX:23008891-23009011 4 1.33e-04 TTA TCTATCTC TTTTTAATGC chr3L:16401204-16401324 33 1.33e-04 GAATTACTTA TCTATCTC CTGCACTCCC chrX:21116203-21116323 46 1.67e-04 gtgcttccgc tcccgctc GCAAGGCATG chr2R:22797620-22797740 100 1.67e-04 ACACTTCCTC TCCCGCTC GCACTTCGTG chrX:18990748-18990868 1 1.89e-04 . TCTCCTTC TCTCCTTCTG chr2R:8963769-8963889 60 1.89e-04 AGCGGTTGCC TCTCCTTC GCTCCGAATA chr2R:9585199-9585319 16 2.04e-04 CGGGCGTTGG TCCCGTTC TGCCACAGCC chrX:2765593-2765713 63 2.24e-04 AGAGATAGCC GCTCGCTC ACGgagggag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19264536-19264656 1.3e-05 5_[+2]_107 chrX:4380996-4381116 1.3e-05 3_[+2]_109 chr2R:13629724-13629844 1.3e-05 88_[+2]_24 chr3R:21558033-21558153 1.3e-05 59_[+2]_53 chr3R:6923884-6924004 1.3e-05 34_[+2]_78 chrX:6669918-6670038 1.3e-05 32_[+2]_80 chrX:12342925-12343045 1.3e-05 35_[+2]_77 chr3L:4582441-4582561 1.3e-05 13_[+2]_99 chrX:5094523-5094643 1.3e-05 70_[+2]_42 chr3R:15314110-15314230 1.3e-05 34_[+2]_78 chr3L:10517746-10517866 1.3e-05 43_[+2]_69 chr2R:22267919-22268039 1.3e-05 54_[+2]_58 chrX:6670485-6670605 1.3e-05 31_[+2]_81 chrX:5160214-5160334 1.3e-05 12_[+2]_100 chr3R:8300822-8300942 1.3e-05 103_[+2]_9 chr2R:8380476-8380596 1.3e-05 13_[+2]_99 chr2L:21776217-21776337 1.3e-05 33_[+2]_79 chrX:2062387-2062507 1.3e-05 33_[+2]_79 chrX:5008779-5008899 1.3e-05 39_[+2]_73 chr3L:2182256-2182376 1.3e-05 48_[+2]_64 chr3L:10574540-10574660 1.3e-05 65_[+2]_47 chrX:19393557-19393677 1.3e-05 57_[+2]_55 chr2L:9929224-9929344 1.3e-05 64_[+2]_48 chrX:11528973-11529093 1.3e-05 14_[+2]_98 chrX:13550915-13551035 1.3e-05 55_[+2]_57 chr3R:17556384-17556504 1.3e-05 84_[+2]_28 chrX:9513823-9513943 1.3e-05 48_[+2]_64 chrX:11397558-11397678 1.3e-05 104_[+2]_8 chr2L:7122107-7122227 1.3e-05 23_[+2]_89 chrX:5548721-5548841 1.3e-05 23_[+2]_89 chrX:11689691-11689811 1.3e-05 23_[+2]_89 chrX:12649828-12649948 1.3e-05 93_[+2]_19 chrX:12640824-12640944 1.3e-05 47_[+2]_65 chrX:11703234-11703354 1.3e-05 21_[+2]_91 chr3R:21559063-21559183 1.3e-05 58_[+2]_54 chrX:6669169-6669289 1.3e-05 33_[+2]_79 chrX:1043038-1043158 1.3e-05 27_[+2]_85 chr2R:18062059-18062179 1.3e-05 39_[+2]_73 chrX:10224824-10224944 1.3e-05 23_[+2]_89 chr2L:18890844-18890964 2.3e-05 92_[+2]_20 chr2R:9663706-9663826 2.3e-05 89_[+2]_23 chrX:2334134-2334254 2.3e-05 79_[+2]_33 chrX:3737914-3738034 2.3e-05 15_[+2]_97 chr3R:29537062-29537182 2.3e-05 92_[+2]_20 chr3L:16480933-16481053 2.3e-05 97_[+2]_15 chr3R:15396755-15396875 2.3e-05 39_[+2]_73 chrX:2078179-2078299 2.3e-05 64_[+2]_48 chr3L:14468124-14468244 2.3e-05 53_[+2]_59 chr3R:18358789-18358909 2.3e-05 22_[+2]_90 chrX:10382484-10382604 2.3e-05 81_[+2]_31 chr3R:10507939-10508059 2.3e-05 63_[+2]_49 chrX:17536013-17536133 2.3e-05 97_[+2]_15 chr3R:8697409-8697529 2.3e-05 16_[+2]_96 chr3L:22141934-22142054 2.3e-05 3_[+2]_109 chrX:17417551-17417671 2.3e-05 111_[+2]_1 chr3L:15231171-15231291 2.3e-05 70_[+2]_42 chrX:8778019-8778139 2.3e-05 108_[+2]_4 chr3R:10517076-10517196 2.3e-05 29_[+2]_83 chrX:6889489-6889609 2.3e-05 83_[+2]_29 chr3R:30076618-30076738 2.3e-05 78_[+2]_34 chrX:8617732-8617852 2.3e-05 62_[+2]_50 chr3L:14298191-14298311 2.3e-05 106_[+2]_6 chr3R:8161626-8161746 2.3e-05 37_[+2]_75 chrX:11145011-11145131 3.9e-05 39_[+2]_73 chr3L:11310467-11310587 3.9e-05 105_[+2]_7 chr2R:18690702-18690822 3.9e-05 49_[+2]_63 chrX:13386908-13387028 3.9e-05 68_[+2]_44 chrX:6303966-6304086 3.9e-05 82_[+2]_30 chrX:17306824-17306944 3.9e-05 51_[+2]_61 chrX:2035087-2035207 3.9e-05 51_[+2]_61 chr2L:5079336-5079456 3.9e-05 45_[+2]_67 chr2R:17328481-17328601 3.9e-05 5_[+2]_107 chrX:18495625-18495745 3.9e-05 38_[+2]_74 chrX:4545050-4545170 3.9e-05 103_[+2]_9 chr2R:8866400-8866520 3.9e-05 61_[+2]_51 chrX:18654442-18654562 3.9e-05 79_[+2]_33 chr2R:23624691-23624811 3.9e-05 73_[+2]_39 chr2R:8313758-8313878 6.7e-05 54_[+2]_58 chrX:3954126-3954246 6.7e-05 74_[+2]_38 chrX:6812148-6812268 6.7e-05 32_[+2]_80 chr2R:10214737-10214857 6.7e-05 33_[+2]_79 chrX:1407533-1407653 8e-05 26_[+2]_86 chr3R:18537776-18537896 8e-05 40_[+2]_72 chr2R:17832366-17832486 8e-05 34_[+2]_78 chr2R:14640983-14641103 9.6e-05 19_[+2]_93 chrX:10851620-10851740 0.00011 63_[+2]_49 chrX:12602338-12602458 0.00011 63_[+2]_49 chrX:15243311-15243431 0.00012 20_[+2]_92 chrX:8167730-8167850 0.00012 52_[+2]_60 chrX:15631524-15631644 0.00012 20_[+2]_92 chrX:23008891-23009011 0.00013 3_[+2]_109 chr3L:16401204-16401324 0.00013 32_[+2]_80 chrX:21116203-21116323 0.00017 45_[+2]_67 chr2R:22797620-22797740 0.00017 99_[+2]_13 chrX:18990748-18990868 0.00019 [+2]_112 chr2R:8963769-8963889 0.00019 59_[+2]_53 chr2R:9585199-9585319 0.0002 15_[+2]_97 chrX:2765593-2765713 0.00022 62_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTYTC width=8 seqs=98 chrX:19264536-19264656 ( 6) TCTCTCTC 1 chrX:4380996-4381116 ( 4) TCTCTCTC 1 chr2R:13629724-13629844 ( 89) TCTCTCTC 1 chr3R:21558033-21558153 ( 60) TCTCTCTC 1 chr3R:6923884-6924004 ( 35) TCTCTCTC 1 chrX:6669918-6670038 ( 33) TCTCTCTC 1 chrX:12342925-12343045 ( 36) TCTCTCTC 1 chr3L:4582441-4582561 ( 14) TCTCTCTC 1 chrX:5094523-5094643 ( 71) TCTCTCTC 1 chr3R:15314110-15314230 ( 35) TCTCTCTC 1 chr3L:10517746-10517866 ( 44) TCTCTCTC 1 chr2R:22267919-22268039 ( 55) TCTCTCTC 1 chrX:6670485-6670605 ( 32) TCTCTCTC 1 chrX:5160214-5160334 ( 13) TCTCTCTC 1 chr3R:8300822-8300942 ( 104) TCTCTCTC 1 chr2R:8380476-8380596 ( 14) TCTCTCTC 1 chr2L:21776217-21776337 ( 34) TCTCTCTC 1 chrX:2062387-2062507 ( 34) TCTCTCTC 1 chrX:5008779-5008899 ( 40) TCTCTCTC 1 chr3L:2182256-2182376 ( 49) TCTCTCTC 1 chr3L:10574540-10574660 ( 66) TCTCTCTC 1 chrX:19393557-19393677 ( 58) TCTCTCTC 1 chr2L:9929224-9929344 ( 65) TCTCTCTC 1 chrX:11528973-11529093 ( 15) TCTCTCTC 1 chrX:13550915-13551035 ( 56) TCTCTCTC 1 chr3R:17556384-17556504 ( 85) TCTCTCTC 1 chrX:9513823-9513943 ( 49) TCTCTCTC 1 chrX:11397558-11397678 ( 105) TCTCTCTC 1 chr2L:7122107-7122227 ( 24) TCTCTCTC 1 chrX:5548721-5548841 ( 24) TCTCTCTC 1 chrX:11689691-11689811 ( 24) TCTCTCTC 1 chrX:12649828-12649948 ( 94) TCTCTCTC 1 chrX:12640824-12640944 ( 48) TCTCTCTC 1 chrX:11703234-11703354 ( 22) TCTCTCTC 1 chr3R:21559063-21559183 ( 59) TCTCTCTC 1 chrX:6669169-6669289 ( 34) TCTCTCTC 1 chrX:1043038-1043158 ( 28) TCTCTCTC 1 chr2R:18062059-18062179 ( 40) TCTCTCTC 1 chrX:10224824-10224944 ( 24) TCTCTCTC 1 chr2L:18890844-18890964 ( 93) TCTCTTTC 1 chr2R:9663706-9663826 ( 90) TCTCTTTC 1 chrX:2334134-2334254 ( 80) TCTCTTTC 1 chrX:3737914-3738034 ( 16) TCTCTTTC 1 chr3R:29537062-29537182 ( 93) TCTCTTTC 1 chr3L:16480933-16481053 ( 98) TCTCTTTC 1 chr3R:15396755-15396875 ( 40) TCTCTTTC 1 chrX:2078179-2078299 ( 65) TCTCTTTC 1 chr3L:14468124-14468244 ( 54) TCTCTTTC 1 chr3R:18358789-18358909 ( 23) TCTCTTTC 1 chrX:10382484-10382604 ( 82) TCTCTTTC 1 chr3R:10507939-10508059 ( 64) TCTCTTTC 1 chrX:17536013-17536133 ( 98) TCTCTTTC 1 chr3R:8697409-8697529 ( 17) TCTCTTTC 1 chr3L:22141934-22142054 ( 4) TCTCTTTC 1 chrX:17417551-17417671 ( 112) TCTCTTTC 1 chr3L:15231171-15231291 ( 71) TCTCTTTC 1 chrX:8778019-8778139 ( 109) TCTCTTTC 1 chr3R:10517076-10517196 ( 30) TCTCTTTC 1 chrX:6889489-6889609 ( 84) TCTCTTTC 1 chr3R:30076618-30076738 ( 79) TCTCTTTC 1 chrX:8617732-8617852 ( 63) TCTCTTTC 1 chr3L:14298191-14298311 ( 107) TCTCTTTC 1 chr3R:8161626-8161746 ( 38) TCTCTTTC 1 chrX:11145011-11145131 ( 40) TCTCGCTC 1 chr3L:11310467-11310587 ( 106) TCTCGCTC 1 chr2R:18690702-18690822 ( 50) TCTCGCTC 1 chrX:13386908-13387028 ( 69) TCTCGCTC 1 chrX:6303966-6304086 ( 83) TCTCGCTC 1 chrX:17306824-17306944 ( 52) TCTCGCTC 1 chrX:2035087-2035207 ( 52) TCTCGCTC 1 chr2L:5079336-5079456 ( 46) TCTCGCTC 1 chr2R:17328481-17328601 ( 6) TCTCGCTC 1 chrX:18495625-18495745 ( 39) TCTCGCTC 1 chrX:4545050-4545170 ( 104) TCTCGCTC 1 chr2R:8866400-8866520 ( 62) TCTCGCTC 1 chrX:18654442-18654562 ( 80) TCTCGCTC 1 chr2R:23624691-23624811 ( 74) TCTCGCTC 1 chr2R:8313758-8313878 ( 55) TCCCTCTC 1 chrX:3954126-3954246 ( 75) TCCCTCTC 1 chrX:6812148-6812268 ( 33) TCCCTCTC 1 chr2R:10214737-10214857 ( 34) TCCCTCTC 1 chrX:1407533-1407653 ( 27) TCCCTTTC 1 chr3R:18537776-18537896 ( 41) TCCCTTTC 1 chr2R:17832366-17832486 ( 35) TCCCTTTC 1 chr2R:14640983-14641103 ( 20) GCTCTCTC 1 chrX:10851620-10851740 ( 64) TCTCTGTC 1 chrX:12602338-12602458 ( 64) TCTCTGTC 1 chrX:15243311-15243431 ( 21) GCTCTTTC 1 chrX:8167730-8167850 ( 53) GCTCTTTC 1 chrX:15631524-15631644 ( 21) GCTCTTTC 1 chrX:23008891-23009011 ( 4) TCTATCTC 1 chr3L:16401204-16401324 ( 33) TCTATCTC 1 chrX:21116203-21116323 ( 46) TCCCGCTC 1 chr2R:22797620-22797740 ( 100) TCCCGCTC 1 chrX:18990748-18990868 ( 1) TCTCCTTC 1 chr2R:8963769-8963889 ( 60) TCTCCTTC 1 chr2R:9585199-9585319 ( 16) TCCCGTTC 1 chrX:2765593-2765713 ( 63) GCTCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.2854 E= 3.0e-105 -1326 -1326 -245 208 -1326 191 -1326 -1326 -1326 -138 -1326 200 -350 188 -1326 -1326 -1326 -370 -61 183 -1326 127 -377 59 -1326 -1326 -1326 216 -1326 191 -1326 -1326 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 3.0e-105 0.000000 0.000000 0.051020 0.948980 0.000000 1.000000 0.000000 0.000000 0.000000 0.102041 0.000000 0.897959 0.020408 0.979592 0.000000 0.000000 0.000000 0.020408 0.183673 0.795918 0.000000 0.642857 0.020408 0.336735 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTYTC MEME-2 regular expression -------------------------------------------------------------------------------- TCTCT[CT]TC -------------------------------------------------------------------------------- Time 13.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GARAGAGA MEME-3 width = 8 sites = 90 llr = 759 E-value = 6.9e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARAGAGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1a36:a:a pos.-specific C ::12:::: probability G 9:51a:a: matrix T :::::::: bits 2.2 * * * 1.9 * * * 1.7 * **** 1.5 * **** Relative 1.3 ** **** Entropy 1.1 ** **** (12.2 bits) 0.9 ** **** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:20445021-20445141 54 1.75e-05 Cagagaaaga gagagaga gagagcgagc chr2R:13191547-13191667 45 1.75e-05 gagagagcag gagagaga tagagagaaa chrX:3734918-3735038 49 1.75e-05 aatagagaga gagagaga gatggggaga chr2R:7692966-7693086 105 1.75e-05 gatagagaaa gagagaga gagagaga chrX:14971201-14971321 45 1.75e-05 gagcgagcga gagagaga gagagagaga chrX:16562408-16562528 84 1.75e-05 gagagagaga gagagaga gagagaaaag chrX:7225026-7225146 75 1.75e-05 gagagagaga gagagaga gagagagaga chrX:1409689-1409809 34 1.75e-05 catagagcga gagagaga cagagagaaa chrX:2343479-2343599 108 1.75e-05 gagagagaaa gagagaga gaTGG chr3R:19241820-19241940 3 1.75e-05 GT GAGAGAGA CAGACAGTTT chrX:19396757-19396877 80 1.75e-05 gagagagagt gagagaga gcgagcagag chrX:20352515-20352635 85 1.75e-05 gacagacaga gagagaga gagagagaga chr2L:14051646-14051766 47 1.75e-05 gagagcgagc gagagaga cggagcgacc chrX:11017590-11017710 27 1.75e-05 gagagagaga gagagaga gGAGGCCAGC chr3R:22220555-22220675 46 1.75e-05 CATCGGgaga gagagaga gagagagaga chrX:13664127-13664247 78 1.75e-05 gaaagaaata gagagaga gagagagaga chr3L:10793616-10793736 68 1.75e-05 gagagagaga gagagaga ggagagagag chr2R:20919874-20919994 75 1.75e-05 gagctggaga gagagaga gagagagaga chrX:2765593-2765713 96 1.75e-05 gagagagaga gagagaga cgtatgggag chr3R:4955394-4955514 63 1.75e-05 gcgagaggga gagagaga gagagagagC chrX:11828758-11828878 77 1.75e-05 aaagcaaggg gagagaga gagagagaga chrX:7435723-7435843 100 3.19e-05 ACCAGGAGGT GAAAGAGA GGGGCATATA chrX:7621170-7621290 56 3.19e-05 GCCAGCTGTG GAAAGAGA GGGTGCTAGC chr2R:8324050-8324170 92 3.19e-05 agaggcgagc gaaagaga gagGTAGACG chr2L:11952565-11952685 52 3.19e-05 TTTAGCGTTG GAAAGAGA CGGCTGTAAG chrX:17334622-17334742 30 3.19e-05 GGAAAACGGT GAAAGAGA CGGGGATACT chr3L:9688604-9688724 5 3.19e-05 CGGG gaaagaga gacagagatc chr3L:20757172-20757292 9 3.19e-05 AGGCAAGG GAAAGAGA CAGCCATATG chr2L:1479628-1479748 77 3.19e-05 GTCTGCGGGG GAAAGAGA CAGAGCAGGG chrX:10684064-10684184 72 3.19e-05 gggagaacgc gaaagaga gacaaagatg chr2R:20933083-20933203 28 3.19e-05 CATagcgagt gaaagaga gggcagacag chr2R:9343991-9344111 59 3.19e-05 TGTTTCAGGA GAAAGAGA CAGATGGTAA chrX:5561754-5561874 78 3.19e-05 GGAAATAAAA GAAAGAGA GGCAACGTGG chrX:472800-472920 100 3.19e-05 ACACTGTAAA GAAAGAGA TGGGAGACCC chrX:18888165-18888285 50 3.19e-05 aacagggata gaaagaga aatagtggaa chr2L:14470176-14470296 107 3.19e-05 CAGATAGCAA GAAAGAGA TGGAAC chr3R:10615656-10615776 38 3.19e-05 CCATTACGCC GAAAGAGA CGGGGATACT chrX:7543730-7543850 44 3.19e-05 ATGGGGAATA GAAAGAGA GAGTCGCAAA chr3L:1032320-1032440 59 3.19e-05 TATGTGGCGA GAAAGAGA GGGCGAGCCA chrX:18266953-18267073 86 3.19e-05 AGTGAATTAA GAAAGAGA TGCGGCTAGA chr2L:21857839-21857959 106 3.19e-05 CCTCATCTGA GAAAGAGA CGGAGCG chr2L:12310129-12310249 77 4.86e-05 GTGTGCCAGG GACAGAGA AATGACAGTG chrX:16798302-16798422 64 4.86e-05 TACGCAGGCa gacagaga gagagagaga chrX:4139998-4140118 60 4.86e-05 cagcgagagc gacagaga ggacaagagt chr3L:14489155-14489275 78 4.86e-05 GTGGGGGGCA GACAGAGA CGGAGACAAT chr3L:14356127-14356247 45 4.86e-05 CTCCGGGTGC GACAGAGA CGGAAGCACA chr2R:13619647-13619767 32 4.86e-05 gagacggaga gacagaga cggagacgga chrX:8801593-8801713 94 4.86e-05 acaggcgtca gacagaga tggagagcgg chrX:879948-880068 30 4.86e-05 TAGCAGGTga gacagaga cagcgagtga chrX:6231931-6232051 102 4.86e-05 gggagacagc gacagaga gaagttaaga chr3R:27642904-27643024 65 6.87e-05 GGCagagagc gagcgaga ggggggaaca chrX:9722076-9722196 102 6.87e-05 gggagggagg gagcgaga gGCAAGTGTC chr2L:14133338-14133458 50 6.87e-05 CTCCCCCAGT GAGCGAGA CGGCAAGCCA chrX:8663325-8663445 49 6.87e-05 GTTTCGCGGT GAGCGAGA CGGGGCGACG chrX:19393557-19393677 80 6.87e-05 Aagagagaga gagcgaga gcgagaTGGA chr3L:16206236-16206356 77 6.87e-05 cgatgggtgc gagcgaga ggacagaCAC chrX:21283019-21283139 27 6.87e-05 GCTGGCGAGT GAGCGAGA GGAGAGACCC chr3R:17822265-17822385 36 8.99e-05 CAGGCAGGAA GAGGGAGA CAGGTTGACA chrX:4398023-4398143 101 8.99e-05 tgggcataaa gagggaga tagcgaggta chrX:16452093-16452213 70 8.99e-05 ATCCGAGATA gagggaga gaaggcgagg chr2L:21814580-21814700 32 8.99e-05 CTCGGTCGGA GAGGGAGA CGGGAAATGG chr2L:1304113-1304233 84 8.99e-05 AAGGCGGCGC GAGGGAGA CGGCACGAGG chrX:20230973-20231093 64 8.99e-05 aagtgagtga gagggaga gagagagaga chr3R:29708445-29708565 74 8.99e-05 GGGGGTGTGT GAGGGAGA CGGGCGAACG chr3L:21670068-21670188 95 8.99e-05 ATTGAAAAGA GAGGGAGA GAGCTGATCC chrX:8813536-8813656 112 1.07e-04 AACAAAACGA GAACGAGA A chrX:9094085-9094205 83 1.07e-04 GCGGGAACGA GAACGAGA ACGGACGTAT chrX:13293672-13293792 59 1.39e-04 gcgatcgcga gaaggaga tggagatgga chr2L:11491352-11491472 76 1.53e-04 GCCGAAGTGC GATAGAGA GGGCAACGAC chr3L:14298191-14298311 39 1.53e-04 TTGGAGAAGA GATAGAGA CGGGCATACT chrX:18636440-18636560 96 1.53e-04 CGAGCCGTTG GATAGAGA CAGAGCGAGT chrX:4008385-4008505 29 1.64e-04 AATAACAATG AAAAGAGA CAGAGCACTA chr2R:14035926-14036046 78 1.64e-04 AGGGCAGTAT AAAAGAGA CAGCATGATC chr3L:7621604-7621724 49 1.81e-04 TTTGACGAGA gagtgaga gggtgagagt chrX:13200966-13201086 36 1.81e-04 ACACCAGAGT GAGTGAGA GGTGTATATG chr3L:1369333-1369453 70 1.81e-04 TGCTGTGTGG GAGTGAGA GGGGGCTAGG chr3L:19143671-19143791 91 1.81e-04 CTAGAAGTGC GAGTGAGA CAGAGGCCGG chr3R:16683774-16683894 104 2.35e-04 GCGGAAAAGG GACGGAGA CAGACAGTT chr3R:25770838-25770958 71 2.35e-04 GAGAAAGCGA GACGGAGA CAAAGGAAGT chrX:15243311-15243431 57 2.65e-04 TAATTCGTGC AAGCGAGA GGGCGATAGA chr2R:19972771-19972891 43 2.65e-04 TAATGCGAGC AAGCGAGA CGGCGCAGGA chr2L:12337564-12337684 95 2.65e-04 TAATCGGAGC AAGCGAGA CGGGGCGCTT chrX:9354948-9355068 57 2.65e-04 GGCGGGAAAC AAGCGAGA CGGCGAGACG chrX:582335-582455 102 2.65e-04 GTGAAGGAGC AAGCGAGA TAGGGCCGCA chr2L:1885914-1886034 103 2.79e-04 TATTCGGTGG GAGAGAAA CGGCAACGGC chr3L:18809908-18810028 76 3.13e-04 GGCGGGGCCA AAGGGAGA GGAGAGTGGG chrX:8167730-8167850 84 3.13e-04 ATAGTGCGCC GATCGAGA TCGCCGAGCT chr3L:6110802-6110922 73 3.13e-04 AGTGGCTCGC AAGGGAGA CAGCACTAGT chrX:3954126-3954246 13 3.72e-04 CGCTCTCTAA GAAAGAAA AGTTGCTTCA chr3R:9105815-9105935 2 4.12e-04 G GAGATAGA ATGGCAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:20445021-20445141 1.8e-05 53_[+3]_59 chr2R:13191547-13191667 1.8e-05 44_[+3]_68 chrX:3734918-3735038 1.8e-05 48_[+3]_64 chr2R:7692966-7693086 1.8e-05 104_[+3]_8 chrX:14971201-14971321 1.8e-05 44_[+3]_68 chrX:16562408-16562528 1.8e-05 83_[+3]_29 chrX:7225026-7225146 1.8e-05 74_[+3]_38 chrX:1409689-1409809 1.8e-05 33_[+3]_79 chrX:2343479-2343599 1.8e-05 107_[+3]_5 chr3R:19241820-19241940 1.8e-05 2_[+3]_110 chrX:19396757-19396877 1.8e-05 79_[+3]_33 chrX:20352515-20352635 1.8e-05 84_[+3]_28 chr2L:14051646-14051766 1.8e-05 46_[+3]_66 chrX:11017590-11017710 1.8e-05 26_[+3]_86 chr3R:22220555-22220675 1.8e-05 45_[+3]_67 chrX:13664127-13664247 1.8e-05 77_[+3]_35 chr3L:10793616-10793736 1.8e-05 67_[+3]_45 chr2R:20919874-20919994 1.8e-05 74_[+3]_38 chrX:2765593-2765713 1.8e-05 95_[+3]_17 chr3R:4955394-4955514 1.8e-05 62_[+3]_50 chrX:11828758-11828878 1.8e-05 76_[+3]_36 chrX:7435723-7435843 3.2e-05 99_[+3]_13 chrX:7621170-7621290 3.2e-05 55_[+3]_57 chr2R:8324050-8324170 3.2e-05 91_[+3]_21 chr2L:11952565-11952685 3.2e-05 51_[+3]_61 chrX:17334622-17334742 3.2e-05 29_[+3]_83 chr3L:9688604-9688724 3.2e-05 4_[+3]_108 chr3L:20757172-20757292 3.2e-05 8_[+3]_104 chr2L:1479628-1479748 3.2e-05 76_[+3]_36 chrX:10684064-10684184 3.2e-05 71_[+3]_41 chr2R:20933083-20933203 3.2e-05 27_[+3]_85 chr2R:9343991-9344111 3.2e-05 58_[+3]_54 chrX:5561754-5561874 3.2e-05 77_[+3]_35 chrX:472800-472920 3.2e-05 99_[+3]_13 chrX:18888165-18888285 3.2e-05 49_[+3]_63 chr2L:14470176-14470296 3.2e-05 106_[+3]_6 chr3R:10615656-10615776 3.2e-05 37_[+3]_75 chrX:7543730-7543850 3.2e-05 43_[+3]_69 chr3L:1032320-1032440 3.2e-05 58_[+3]_54 chrX:18266953-18267073 3.2e-05 85_[+3]_27 chr2L:21857839-21857959 3.2e-05 105_[+3]_7 chr2L:12310129-12310249 4.9e-05 76_[+3]_36 chrX:16798302-16798422 4.9e-05 63_[+3]_49 chrX:4139998-4140118 4.9e-05 59_[+3]_53 chr3L:14489155-14489275 4.9e-05 77_[+3]_35 chr3L:14356127-14356247 4.9e-05 44_[+3]_68 chr2R:13619647-13619767 4.9e-05 31_[+3]_81 chrX:8801593-8801713 4.9e-05 93_[+3]_19 chrX:879948-880068 4.9e-05 29_[+3]_83 chrX:6231931-6232051 4.9e-05 101_[+3]_11 chr3R:27642904-27643024 6.9e-05 64_[+3]_48 chrX:9722076-9722196 6.9e-05 101_[+3]_11 chr2L:14133338-14133458 6.9e-05 49_[+3]_63 chrX:8663325-8663445 6.9e-05 48_[+3]_64 chrX:19393557-19393677 6.9e-05 79_[+3]_33 chr3L:16206236-16206356 6.9e-05 76_[+3]_36 chrX:21283019-21283139 6.9e-05 26_[+3]_86 chr3R:17822265-17822385 9e-05 35_[+3]_77 chrX:4398023-4398143 9e-05 100_[+3]_12 chrX:16452093-16452213 9e-05 69_[+3]_43 chr2L:21814580-21814700 9e-05 31_[+3]_81 chr2L:1304113-1304233 9e-05 83_[+3]_29 chrX:20230973-20231093 9e-05 63_[+3]_49 chr3R:29708445-29708565 9e-05 73_[+3]_39 chr3L:21670068-21670188 9e-05 94_[+3]_18 chrX:8813536-8813656 0.00011 111_[+3]_1 chrX:9094085-9094205 0.00011 82_[+3]_30 chrX:13293672-13293792 0.00014 58_[+3]_54 chr2L:11491352-11491472 0.00015 75_[+3]_37 chr3L:14298191-14298311 0.00015 38_[+3]_74 chrX:18636440-18636560 0.00015 95_[+3]_17 chrX:4008385-4008505 0.00016 28_[+3]_84 chr2R:14035926-14036046 0.00016 77_[+3]_35 chr3L:7621604-7621724 0.00018 48_[+3]_64 chrX:13200966-13201086 0.00018 35_[+3]_77 chr3L:1369333-1369453 0.00018 69_[+3]_43 chr3L:19143671-19143791 0.00018 90_[+3]_22 chr3R:16683774-16683894 0.00023 103_[+3]_9 chr3R:25770838-25770958 0.00023 70_[+3]_42 chrX:15243311-15243431 0.00027 56_[+3]_56 chr2R:19972771-19972891 0.00027 42_[+3]_70 chr2L:12337564-12337684 0.00027 94_[+3]_18 chrX:9354948-9355068 0.00027 56_[+3]_56 chrX:582335-582455 0.00027 101_[+3]_11 chr2L:1885914-1886034 0.00028 102_[+3]_10 chr3L:18809908-18810028 0.00031 75_[+3]_37 chrX:8167730-8167850 0.00031 83_[+3]_29 chr3L:6110802-6110922 0.00031 72_[+3]_40 chrX:3954126-3954246 0.00037 12_[+3]_100 chr3R:9105815-9105935 0.00041 1_[+3]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARAGAGA width=8 seqs=90 chrX:20445021-20445141 ( 54) GAGAGAGA 1 chr2R:13191547-13191667 ( 45) GAGAGAGA 1 chrX:3734918-3735038 ( 49) GAGAGAGA 1 chr2R:7692966-7693086 ( 105) GAGAGAGA 1 chrX:14971201-14971321 ( 45) GAGAGAGA 1 chrX:16562408-16562528 ( 84) GAGAGAGA 1 chrX:7225026-7225146 ( 75) GAGAGAGA 1 chrX:1409689-1409809 ( 34) GAGAGAGA 1 chrX:2343479-2343599 ( 108) GAGAGAGA 1 chr3R:19241820-19241940 ( 3) GAGAGAGA 1 chrX:19396757-19396877 ( 80) GAGAGAGA 1 chrX:20352515-20352635 ( 85) GAGAGAGA 1 chr2L:14051646-14051766 ( 47) GAGAGAGA 1 chrX:11017590-11017710 ( 27) GAGAGAGA 1 chr3R:22220555-22220675 ( 46) GAGAGAGA 1 chrX:13664127-13664247 ( 78) GAGAGAGA 1 chr3L:10793616-10793736 ( 68) GAGAGAGA 1 chr2R:20919874-20919994 ( 75) GAGAGAGA 1 chrX:2765593-2765713 ( 96) GAGAGAGA 1 chr3R:4955394-4955514 ( 63) GAGAGAGA 1 chrX:11828758-11828878 ( 77) GAGAGAGA 1 chrX:7435723-7435843 ( 100) GAAAGAGA 1 chrX:7621170-7621290 ( 56) GAAAGAGA 1 chr2R:8324050-8324170 ( 92) GAAAGAGA 1 chr2L:11952565-11952685 ( 52) GAAAGAGA 1 chrX:17334622-17334742 ( 30) GAAAGAGA 1 chr3L:9688604-9688724 ( 5) GAAAGAGA 1 chr3L:20757172-20757292 ( 9) GAAAGAGA 1 chr2L:1479628-1479748 ( 77) GAAAGAGA 1 chrX:10684064-10684184 ( 72) GAAAGAGA 1 chr2R:20933083-20933203 ( 28) GAAAGAGA 1 chr2R:9343991-9344111 ( 59) GAAAGAGA 1 chrX:5561754-5561874 ( 78) GAAAGAGA 1 chrX:472800-472920 ( 100) GAAAGAGA 1 chrX:18888165-18888285 ( 50) GAAAGAGA 1 chr2L:14470176-14470296 ( 107) GAAAGAGA 1 chr3R:10615656-10615776 ( 38) GAAAGAGA 1 chrX:7543730-7543850 ( 44) GAAAGAGA 1 chr3L:1032320-1032440 ( 59) GAAAGAGA 1 chrX:18266953-18267073 ( 86) GAAAGAGA 1 chr2L:21857839-21857959 ( 106) GAAAGAGA 1 chr2L:12310129-12310249 ( 77) GACAGAGA 1 chrX:16798302-16798422 ( 64) GACAGAGA 1 chrX:4139998-4140118 ( 60) GACAGAGA 1 chr3L:14489155-14489275 ( 78) GACAGAGA 1 chr3L:14356127-14356247 ( 45) GACAGAGA 1 chr2R:13619647-13619767 ( 32) GACAGAGA 1 chrX:8801593-8801713 ( 94) GACAGAGA 1 chrX:879948-880068 ( 30) GACAGAGA 1 chrX:6231931-6232051 ( 102) GACAGAGA 1 chr3R:27642904-27643024 ( 65) GAGCGAGA 1 chrX:9722076-9722196 ( 102) GAGCGAGA 1 chr2L:14133338-14133458 ( 50) GAGCGAGA 1 chrX:8663325-8663445 ( 49) GAGCGAGA 1 chrX:19393557-19393677 ( 80) GAGCGAGA 1 chr3L:16206236-16206356 ( 77) GAGCGAGA 1 chrX:21283019-21283139 ( 27) GAGCGAGA 1 chr3R:17822265-17822385 ( 36) GAGGGAGA 1 chrX:4398023-4398143 ( 101) GAGGGAGA 1 chrX:16452093-16452213 ( 70) GAGGGAGA 1 chr2L:21814580-21814700 ( 32) GAGGGAGA 1 chr2L:1304113-1304233 ( 84) GAGGGAGA 1 chrX:20230973-20231093 ( 64) GAGGGAGA 1 chr3R:29708445-29708565 ( 74) GAGGGAGA 1 chr3L:21670068-21670188 ( 95) GAGGGAGA 1 chrX:8813536-8813656 ( 112) GAACGAGA 1 chrX:9094085-9094205 ( 83) GAACGAGA 1 chrX:13293672-13293792 ( 59) GAAGGAGA 1 chr2L:11491352-11491472 ( 76) GATAGAGA 1 chr3L:14298191-14298311 ( 39) GATAGAGA 1 chrX:18636440-18636560 ( 96) GATAGAGA 1 chrX:4008385-4008505 ( 29) AAAAGAGA 1 chr2R:14035926-14036046 ( 78) AAAAGAGA 1 chr3L:7621604-7621724 ( 49) GAGTGAGA 1 chrX:13200966-13201086 ( 36) GAGTGAGA 1 chr3L:1369333-1369453 ( 70) GAGTGAGA 1 chr3L:19143671-19143791 ( 91) GAGTGAGA 1 chr3R:16683774-16683894 ( 104) GACGGAGA 1 chr3R:25770838-25770958 ( 71) GACGGAGA 1 chrX:15243311-15243431 ( 57) AAGCGAGA 1 chr2R:19972771-19972891 ( 43) AAGCGAGA 1 chr2L:12337564-12337684 ( 95) AAGCGAGA 1 chrX:9354948-9355068 ( 57) AAGCGAGA 1 chrX:582335-582455 ( 102) AAGCGAGA 1 chr2L:1885914-1886034 ( 103) GAGAGAAA 1 chr3L:18809908-18810028 ( 76) AAGGGAGA 1 chrX:8167730-8167850 ( 84) GATCGAGA 1 chr3L:6110802-6110922 ( 73) AAGGGAGA 1 chrX:3954126-3954246 ( 13) GAAAGAAA 1 chr3R:9105815-9105935 ( 2) GAGATAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.33748 E= 6.9e-056 -121 -1314 169 -1314 211 -1314 -1314 -1314 32 -112 96 -233 148 -67 -95 -233 -1314 -1314 182 -433 211 -1314 -1314 -1314 -338 -1314 181 -1314 211 -1314 -1314 -1314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 6.9e-056 0.100000 0.000000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 0.288889 0.122222 0.544444 0.044444 0.644444 0.166667 0.144444 0.044444 0.000000 0.000000 0.988889 0.011111 1.000000 0.000000 0.000000 0.000000 0.022222 0.000000 0.977778 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAGAGA MEME-3 regular expression -------------------------------------------------------------------------------- GA[GA]AGAGA -------------------------------------------------------------------------------- Time 19.19 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCTC MEME-4 width = 8 sites = 69 llr = 626 E-value = 1.9e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C :a:927:a probability G ::::1::: matrix T a:a:73a: bits 2.2 * * 1.9 *** ** 1.7 *** ** 1.5 **** ** Relative 1.3 **** ** Entropy 1.1 **** ** (13.1 bits) 0.9 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19264536-19264656 14 1.26e-05 tctctctctc tctctctc tttctctctg chr2R:13629724-13629844 79 1.26e-05 tcgctctgtc tctctctc tttctctctc chr3L:4582441-4582561 52 1.26e-05 tctatctcta tctctctc caccactatc chrX:5094523-5094643 22 1.26e-05 GCTCGCTTTT TCTCTCTC CCACTCACTC chr3R:15314110-15314230 27 1.26e-05 tgtctctatg tctctctc tctctctctc chrX:6670485-6670605 24 1.26e-05 GAAGCTCctc tctctctc tctctctctc chrX:5160214-5160334 21 1.26e-05 tctctctctc tctctctc tctctctctc chr2R:8380476-8380596 6 1.26e-05 Atcgc tctctctc tctctctctc chr2L:21776217-21776337 24 1.26e-05 ctgctgtctc tctctctc tctctctctc chrX:5008779-5008899 48 1.26e-05 tctctctctc tctctctc actatctctc chr3L:2182256-2182376 57 1.26e-05 tctctctctc tctctctc tctctctGGC chr2L:9929224-9929344 79 1.26e-05 tctccctctc tctctctc tctctTGCTG chrX:11528973-11529093 7 1.26e-05 CTGCCG tctctctc tctctctctc chr3R:17556384-17556504 77 1.26e-05 tctccttctc tctctctc tctctctctc chrX:9513823-9513943 23 1.26e-05 GCTCAGTGCG TCTCTCTC TAGCGCCATA chr2L:7122107-7122227 69 1.26e-05 ACTCTCTGCC TCTCTCTC TATTTCTACC chrX:11689691-11689811 57 1.26e-05 CGTCTCTATC TCTCTCTC TGTCTGCCTG chrX:12649828-12649948 86 1.26e-05 gctcTCTATT TCTCTCTC TCTCTCTCTC chrX:12640824-12640944 56 1.26e-05 tctctctctc tctctctc tgtctgtcag chrX:11703234-11703354 10 1.26e-05 TGCCctctc tctctctc cctctctctc chr2R:18062059-18062179 22 1.26e-05 TAtctctctc tctctctc tctctatctc chrX:10224824-10224944 71 1.26e-05 tgtatatctg tctctctc actACCGCGA chr2R:9663706-9663826 65 2.32e-05 CTTACAGCCC TCTCTTTC GCACGCCGTA chrX:12342925-12343045 72 2.32e-05 GCGCTACCTG TCTCTTTC CAGCAAAATG chrX:3737914-3738034 76 2.32e-05 ACTATCGCCA TCTCTTTC GTCGAGGGGC chr3R:29537062-29537182 69 2.32e-05 TTGCCATCCG TCTCTTTC TTGCCACAGC chr2R:22267919-22268039 79 2.32e-05 CATCTTGCCG TCTCTTTC GGCTGCCTGC chr3L:16480933-16481053 75 2.32e-05 CCTCCCTCCG TCTCTTTC GTTCCCCTGC chr3R:10517076-10517196 5 2.32e-05 TCCG TCTCTTTC TATCGCTGGG chrX:6889489-6889609 60 2.32e-05 CATAGCGACC TCTCTTTC GTTCCGCCTA chr3R:30076618-30076738 55 2.32e-05 TGTCCGTCCG TCTCTTTC TGCCCCCACC chrX:13550915-13551035 31 2.32e-05 AATAGCATCC TCTCTTTC CGCCGCCTCA chrX:5548721-5548841 102 2.32e-05 AGTCGCGCCT TCTCTTTC TTGCGTGGCA chrX:6669169-6669289 3 2.32e-05 tg tctctttc agcgttctct chr3R:8161626-8161746 62 2.32e-05 CCTGCTTCCG TCTCTTTC CCGCATTGCC chrX:1043038-1043158 12 2.32e-05 CCTTCctcta tctctttc tctctgtatc chrX:6669918-6670038 69 3.82e-05 ctgtttgctg tctccctc tGATCACTGC chr3L:14468124-14468244 30 3.82e-05 GCATTGTCCG TCTCCCTC GGCTGCAATA chr3L:22141934-22142054 24 3.82e-05 TTTATTTCTG TCTCCCTC TGCGGTTTGG chrX:8778019-8778139 83 3.82e-05 GCTCTCTCCC TCTCCCTC TGCGGCGTGT chr2L:5079336-5079456 4 3.82e-05 tcg tctccctc tctctggctg chrX:8617732-8617852 29 3.82e-05 GCTGTTCATC TCTCCCTC GCACCGACAT chr2R:23624691-23624811 40 3.82e-05 CCACAGCctc tctccctc tctccttctc chr3L:14298191-14298311 93 3.82e-05 GTGGGAATGT tctccctc tcgccctctc chr3R:21559063-21559183 25 3.82e-05 TGTGGCCTTC TCTCCCTC TCACTCTCGC chrX:4380996-4381116 75 6.69e-05 AGTCACGTCC TCTCACTC ACTCCGCCAG chrX:11145011-11145131 63 6.69e-05 GAGCATGCCG TCTCGCTC GTTTCTAACA chrX:6303966-6304086 47 6.69e-05 AGACGCGGTG TCTCGCTC AAGTGTTCCT chr3L:10517746-10517866 76 6.69e-05 tcgcgccccg tctcgctc gctcgcacgT chr2R:8313758-8313878 2 6.69e-05 c tctcactc gctccctctc chrX:2062387-2062507 60 6.69e-05 AAACGTGTCA TCTCGCTC GCTTCCAAGC chr3L:15231171-15231291 41 6.69e-05 ACCCGCACTA TCTCGCTC TCTGTCCACC chrX:18495625-18495745 79 6.69e-05 CATCGCATTC TCTCACTC ATACGCAAGG chrX:4545050-4545170 51 6.69e-05 TATAGCCGCA TCTCGCTC GAATTCCCAC chr2R:8866400-8866520 27 6.69e-05 tctctatctt tctcactc tgtctGTGTA chrX:18990748-18990868 9 7.95e-05 TCTCCTTC TCTCCTTC TGTCCCGCTG chrX:2078179-2078299 83 1.17e-04 CGGTGCTCTT TCTCTGTC GGATTGCTGT chrX:3954126-3954246 56 1.17e-04 CATCACTCTT TCTCATTC TCAACCGTCT chr3L:10574540-10574660 43 1.17e-04 TCTGTGTACC TCTCTGTC TCGCTGGTGT chrX:2035087-2035207 25 1.17e-04 TATATATCTA TCTCGTTC CCTGTCCCGC chr2R:17328481-17328601 37 1.17e-04 CGGGCGACCC TCTCATTC ACACTCGTTC chrX:11397558-11397678 22 1.17e-04 cgtttgtcta tctctgtc tGGACAATTC chr2L:18890844-18890964 112 1.28e-04 ACTTTCATCG TCTATCTC T chr3R:21558033-21558153 80 1.39e-04 tcgtcgggct tctttctc tcttactcct chr3R:10507939-10508059 92 1.61e-04 GTTGATTTTA TCTATTTC TAGCTCTTTC chr3R:8697409-8697529 27 1.61e-04 TCTCTTTCCC ACTCTCTC GCTTGACCGC chrX:19393557-19393677 48 1.61e-04 CCTCGCTCGT ACTCTCTC CCTCTCTCTC chrX:8167730-8167850 22 1.70e-04 GCTAACCCTC TCTTTTTC GCTTGCCTGG chrX:13386908-13387028 37 2.09e-04 TGCTCCCTCC TCTACCTC ACTCGCTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19264536-19264656 1.3e-05 13_[+4]_99 chr2R:13629724-13629844 1.3e-05 78_[+4]_34 chr3L:4582441-4582561 1.3e-05 51_[+4]_61 chrX:5094523-5094643 1.3e-05 21_[+4]_91 chr3R:15314110-15314230 1.3e-05 26_[+4]_86 chrX:6670485-6670605 1.3e-05 23_[+4]_89 chrX:5160214-5160334 1.3e-05 20_[+4]_92 chr2R:8380476-8380596 1.3e-05 5_[+4]_107 chr2L:21776217-21776337 1.3e-05 23_[+4]_89 chrX:5008779-5008899 1.3e-05 47_[+4]_65 chr3L:2182256-2182376 1.3e-05 56_[+4]_56 chr2L:9929224-9929344 1.3e-05 78_[+4]_34 chrX:11528973-11529093 1.3e-05 6_[+4]_106 chr3R:17556384-17556504 1.3e-05 76_[+4]_36 chrX:9513823-9513943 1.3e-05 22_[+4]_90 chr2L:7122107-7122227 1.3e-05 68_[+4]_44 chrX:11689691-11689811 1.3e-05 56_[+4]_56 chrX:12649828-12649948 1.3e-05 85_[+4]_27 chrX:12640824-12640944 1.3e-05 55_[+4]_57 chrX:11703234-11703354 1.3e-05 9_[+4]_103 chr2R:18062059-18062179 1.3e-05 21_[+4]_91 chrX:10224824-10224944 1.3e-05 70_[+4]_42 chr2R:9663706-9663826 2.3e-05 64_[+4]_48 chrX:12342925-12343045 2.3e-05 71_[+4]_41 chrX:3737914-3738034 2.3e-05 75_[+4]_37 chr3R:29537062-29537182 2.3e-05 68_[+4]_44 chr2R:22267919-22268039 2.3e-05 78_[+4]_34 chr3L:16480933-16481053 2.3e-05 74_[+4]_38 chr3R:10517076-10517196 2.3e-05 4_[+4]_108 chrX:6889489-6889609 2.3e-05 59_[+4]_53 chr3R:30076618-30076738 2.3e-05 54_[+4]_58 chrX:13550915-13551035 2.3e-05 30_[+4]_82 chrX:5548721-5548841 2.3e-05 101_[+4]_11 chrX:6669169-6669289 2.3e-05 2_[+4]_110 chr3R:8161626-8161746 2.3e-05 61_[+4]_51 chrX:1043038-1043158 2.3e-05 11_[+4]_101 chrX:6669918-6670038 3.8e-05 68_[+4]_44 chr3L:14468124-14468244 3.8e-05 29_[+4]_83 chr3L:22141934-22142054 3.8e-05 23_[+4]_89 chrX:8778019-8778139 3.8e-05 82_[+4]_30 chr2L:5079336-5079456 3.8e-05 3_[+4]_109 chrX:8617732-8617852 3.8e-05 28_[+4]_84 chr2R:23624691-23624811 3.8e-05 39_[+4]_73 chr3L:14298191-14298311 3.8e-05 92_[+4]_20 chr3R:21559063-21559183 3.8e-05 24_[+4]_88 chrX:4380996-4381116 6.7e-05 74_[+4]_38 chrX:11145011-11145131 6.7e-05 62_[+4]_50 chrX:6303966-6304086 6.7e-05 46_[+4]_66 chr3L:10517746-10517866 6.7e-05 75_[+4]_37 chr2R:8313758-8313878 6.7e-05 1_[+4]_111 chrX:2062387-2062507 6.7e-05 59_[+4]_53 chr3L:15231171-15231291 6.7e-05 40_[+4]_72 chrX:18495625-18495745 6.7e-05 78_[+4]_34 chrX:4545050-4545170 6.7e-05 50_[+4]_62 chr2R:8866400-8866520 6.7e-05 26_[+4]_86 chrX:18990748-18990868 8e-05 8_[+4]_104 chrX:2078179-2078299 0.00012 82_[+4]_30 chrX:3954126-3954246 0.00012 55_[+4]_57 chr3L:10574540-10574660 0.00012 42_[+4]_70 chrX:2035087-2035207 0.00012 24_[+4]_88 chr2R:17328481-17328601 0.00012 36_[+4]_76 chrX:11397558-11397678 0.00012 21_[+4]_91 chr2L:18890844-18890964 0.00013 111_[+4]_1 chr3R:21558033-21558153 0.00014 79_[+4]_33 chr3R:10507939-10508059 0.00016 91_[+4]_21 chr3R:8697409-8697529 0.00016 26_[+4]_86 chrX:19393557-19393677 0.00016 47_[+4]_65 chrX:8167730-8167850 0.00017 21_[+4]_91 chrX:13386908-13387028 0.00021 36_[+4]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCTC width=8 seqs=69 chrX:19264536-19264656 ( 14) TCTCTCTC 1 chr2R:13629724-13629844 ( 79) TCTCTCTC 1 chr3L:4582441-4582561 ( 52) TCTCTCTC 1 chrX:5094523-5094643 ( 22) TCTCTCTC 1 chr3R:15314110-15314230 ( 27) TCTCTCTC 1 chrX:6670485-6670605 ( 24) TCTCTCTC 1 chrX:5160214-5160334 ( 21) TCTCTCTC 1 chr2R:8380476-8380596 ( 6) TCTCTCTC 1 chr2L:21776217-21776337 ( 24) TCTCTCTC 1 chrX:5008779-5008899 ( 48) TCTCTCTC 1 chr3L:2182256-2182376 ( 57) TCTCTCTC 1 chr2L:9929224-9929344 ( 79) TCTCTCTC 1 chrX:11528973-11529093 ( 7) TCTCTCTC 1 chr3R:17556384-17556504 ( 77) TCTCTCTC 1 chrX:9513823-9513943 ( 23) TCTCTCTC 1 chr2L:7122107-7122227 ( 69) TCTCTCTC 1 chrX:11689691-11689811 ( 57) TCTCTCTC 1 chrX:12649828-12649948 ( 86) TCTCTCTC 1 chrX:12640824-12640944 ( 56) TCTCTCTC 1 chrX:11703234-11703354 ( 10) TCTCTCTC 1 chr2R:18062059-18062179 ( 22) TCTCTCTC 1 chrX:10224824-10224944 ( 71) TCTCTCTC 1 chr2R:9663706-9663826 ( 65) TCTCTTTC 1 chrX:12342925-12343045 ( 72) TCTCTTTC 1 chrX:3737914-3738034 ( 76) TCTCTTTC 1 chr3R:29537062-29537182 ( 69) TCTCTTTC 1 chr2R:22267919-22268039 ( 79) TCTCTTTC 1 chr3L:16480933-16481053 ( 75) TCTCTTTC 1 chr3R:10517076-10517196 ( 5) TCTCTTTC 1 chrX:6889489-6889609 ( 60) TCTCTTTC 1 chr3R:30076618-30076738 ( 55) TCTCTTTC 1 chrX:13550915-13551035 ( 31) TCTCTTTC 1 chrX:5548721-5548841 ( 102) TCTCTTTC 1 chrX:6669169-6669289 ( 3) TCTCTTTC 1 chr3R:8161626-8161746 ( 62) TCTCTTTC 1 chrX:1043038-1043158 ( 12) TCTCTTTC 1 chrX:6669918-6670038 ( 69) TCTCCCTC 1 chr3L:14468124-14468244 ( 30) TCTCCCTC 1 chr3L:22141934-22142054 ( 24) TCTCCCTC 1 chrX:8778019-8778139 ( 83) TCTCCCTC 1 chr2L:5079336-5079456 ( 4) TCTCCCTC 1 chrX:8617732-8617852 ( 29) TCTCCCTC 1 chr2R:23624691-23624811 ( 40) TCTCCCTC 1 chr3L:14298191-14298311 ( 93) TCTCCCTC 1 chr3R:21559063-21559183 ( 25) TCTCCCTC 1 chrX:4380996-4381116 ( 75) TCTCACTC 1 chrX:11145011-11145131 ( 63) TCTCGCTC 1 chrX:6303966-6304086 ( 47) TCTCGCTC 1 chr3L:10517746-10517866 ( 76) TCTCGCTC 1 chr2R:8313758-8313878 ( 2) TCTCACTC 1 chrX:2062387-2062507 ( 60) TCTCGCTC 1 chr3L:15231171-15231291 ( 41) TCTCGCTC 1 chrX:18495625-18495745 ( 79) TCTCACTC 1 chrX:4545050-4545170 ( 51) TCTCGCTC 1 chr2R:8866400-8866520 ( 27) TCTCACTC 1 chrX:18990748-18990868 ( 9) TCTCCTTC 1 chrX:2078179-2078299 ( 83) TCTCTGTC 1 chrX:3954126-3954246 ( 56) TCTCATTC 1 chr3L:10574540-10574660 ( 43) TCTCTGTC 1 chrX:2035087-2035207 ( 25) TCTCGTTC 1 chr2R:17328481-17328601 ( 37) TCTCATTC 1 chrX:11397558-11397678 ( 22) TCTCTGTC 1 chr2L:18890844-18890964 ( 112) TCTATCTC 1 chr3R:21558033-21558153 ( 80) TCTTTCTC 1 chr3R:10507939-10508059 ( 92) TCTATTTC 1 chr3R:8697409-8697529 ( 27) ACTCTCTC 1 chrX:19393557-19393677 ( 48) ACTCTCTC 1 chrX:8167730-8167850 ( 22) TCTTTTTC 1 chrX:13386908-13387028 ( 37) TCTACCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 1.9e-049 -299 -1275 -1275 212 -1275 191 -1275 -1275 -1275 -1275 -1275 216 -241 180 -1275 -295 -141 -74 -146 154 -1275 133 -268 37 -1275 -1275 -1275 216 -1275 191 -1275 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 1.9e-049 0.028986 0.000000 0.000000 0.971014 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.043478 0.927536 0.000000 0.028986 0.086957 0.159420 0.101449 0.652174 0.000000 0.666667 0.043478 0.289855 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-4 regular expression -------------------------------------------------------------------------------- TCTCT[CT]TC -------------------------------------------------------------------------------- Time 24.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAGAGA MEME-5 width = 8 sites = 44 llr = 393 E-value = 3.7e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAGAGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a7a:8:9 pos.-specific C :::::::: probability G a:2:a2a1 matrix T ::1::::: bits 2.2 * * 1.9 * ** 1.7 ** ** * 1.5 ** ** ** Relative 1.3 ** ** ** Entropy 1.1 ** ***** (12.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAGAGA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGAGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:20445021-20445141 106 1.44e-05 ggtgaagcaa gaaagaga gaTAAGA chr2R:13191547-13191667 89 1.44e-05 ggaaaaggac gaaagaga gagagCTTGC chrX:3734918-3735038 24 1.44e-05 ATCTGTGGCa gaaagaga cgggcgcaat chr2R:7692966-7693086 83 1.44e-05 GACACCTGGC gaaagaga gatagataga chrX:14971201-14971321 71 1.44e-05 gagagaggga gaaagaga gtgagacagC chr3L:9688604-9688724 105 1.44e-05 AGGTTGGCGA GAAAGAGA GAGCGAGC chrX:2343479-2343599 84 1.44e-05 CCACCAAAGT GAAagaga gagagagaga chrX:10684064-10684184 112 1.44e-05 aagggaaaga gaaagaga a chr2L:14051646-14051766 78 1.44e-05 gctagaaaga gaaagaga acgagtgcAT chrX:11017590-11017710 55 1.44e-05 TGATTGGCGA GAAAGAGA GGGCGCTACG chr2R:20933083-20933203 49 1.44e-05 cagacagcga gaaagaga gtgcgagaga chr2R:9343991-9344111 33 1.44e-05 CATGGTGTGC GAAAGAGA GGGAGAGATG chrX:18888165-18888285 27 1.44e-05 ACACCagagc gaaagaga cagggaacag chrX:7543730-7543850 78 1.44e-05 TGAGCGTCGA GAAAGAGA CGGGGCATAT chr2R:20919874-20919994 37 1.44e-05 CCAGAAATCA GAAAGAGA CAGCTACATT chrX:2765593-2765713 50 1.44e-05 GGCTCCATAA GAAAGAGA TAGCCGCTCG chr3R:4955394-4955514 32 1.44e-05 CGAGCAACTa gaaagaga tggacagctg chrX:4398023-4398143 58 3.19e-05 CCTTAGCGAT GAAaggga gggtggaggg chr2R:8324050-8324170 69 3.19e-05 gggcttacca gaaaggga tggggagagg chr3L:20757172-20757292 99 3.19e-05 GACGGCGAGT GAAAGGGA GAGCACGAGC chrX:4139998-4140118 16 3.19e-05 AATTAGCATA GAAAGGGA CATCAAATCA chrX:20230973-20231093 30 3.19e-05 CACATCGGGG gaaaggga tagacagagg chr2R:13619647-13619767 90 3.19e-05 taaaggtggc gaaaggga cgggtagacg chr3R:22220555-22220675 68 4.59e-05 gagagatagg gatagaga gCGGGACGGA chr2L:14470176-14470296 53 4.59e-05 TTCCCAGCAT GATAGAGA TAGGGCTATA chrX:6231931-6232051 54 4.59e-05 gagaaagtga gatagaga gagagagaga chrX:16562408-16562528 72 6.34e-05 gagagataga gagagaga gagagagaga chrX:7225026-7225146 87 6.34e-05 gagagagaga gagagaga gTTCAAGGAA chrX:20352515-20352635 109 6.34e-05 gagagagaga gagagaga gaCT chrX:13664127-13664247 56 6.34e-05 Aagtgagatg gagagaga cagagaaaga chr3L:10793616-10793736 77 6.34e-05 agagagagag gagagaga gaAAGATGCT chr2R:10796364-10796484 100 8.09e-05 CGAAAGGGAC GAAAGAGG CGATAGGAGC chrX:13080544-13080664 36 8.09e-05 GAAAGTGAGT GAAAGAGG CGAGGATTAG chrX:9094085-9094205 8 8.09e-05 GACATCA GAAAGAGG CAGGATCGAT chrX:11828758-11828878 56 8.09e-05 gagtgagatg gaaagagg gagaaagcaa chrX:15243311-15243431 81 9.79e-05 TAGAGTTTGT GATAGGGA GAGGGGGACA chrX:9722076-9722196 88 1.19e-04 gagagatgga gagaggga gggagggagc chrX:879948-880068 95 1.19e-04 gagagggagc gagaggga gggagcgcaa chr2L:11491352-11491472 108 1.33e-04 TGACCAAGAA GAAAGTGA GAAAG chr3R:17822265-17822385 60 1.95e-04 GACAGAGAGG AAAAGAGA TGGGATGAGT chr3R:27642904-27643024 85 1.95e-04 ggggaacaga gaaagaaa gagagagaTT chrX:1409689-1409809 10 1.95e-04 agtgacagc gacagaga tagcgacata chr3R:14456192-14456312 76 2.12e-04 GTGGGTGAGC GATAGAGG ACGCCTGCAT chr2R:14035926-14036046 63 2.12e-04 CGAGTGTGAA GATAGAGG GCAGTATAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGAGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:20445021-20445141 1.4e-05 105_[+5]_7 chr2R:13191547-13191667 1.4e-05 88_[+5]_24 chrX:3734918-3735038 1.4e-05 23_[+5]_89 chr2R:7692966-7693086 1.4e-05 82_[+5]_30 chrX:14971201-14971321 1.4e-05 70_[+5]_42 chr3L:9688604-9688724 1.4e-05 104_[+5]_8 chrX:2343479-2343599 1.4e-05 83_[+5]_29 chrX:10684064-10684184 1.4e-05 111_[+5]_1 chr2L:14051646-14051766 1.4e-05 77_[+5]_35 chrX:11017590-11017710 1.4e-05 54_[+5]_58 chr2R:20933083-20933203 1.4e-05 48_[+5]_64 chr2R:9343991-9344111 1.4e-05 32_[+5]_80 chrX:18888165-18888285 1.4e-05 26_[+5]_86 chrX:7543730-7543850 1.4e-05 77_[+5]_35 chr2R:20919874-20919994 1.4e-05 36_[+5]_76 chrX:2765593-2765713 1.4e-05 49_[+5]_63 chr3R:4955394-4955514 1.4e-05 31_[+5]_81 chrX:4398023-4398143 3.2e-05 57_[+5]_55 chr2R:8324050-8324170 3.2e-05 68_[+5]_44 chr3L:20757172-20757292 3.2e-05 98_[+5]_14 chrX:4139998-4140118 3.2e-05 15_[+5]_97 chrX:20230973-20231093 3.2e-05 29_[+5]_83 chr2R:13619647-13619767 3.2e-05 89_[+5]_23 chr3R:22220555-22220675 4.6e-05 67_[+5]_45 chr2L:14470176-14470296 4.6e-05 52_[+5]_60 chrX:6231931-6232051 4.6e-05 53_[+5]_59 chrX:16562408-16562528 6.3e-05 71_[+5]_41 chrX:7225026-7225146 6.3e-05 86_[+5]_26 chrX:20352515-20352635 6.3e-05 108_[+5]_4 chrX:13664127-13664247 6.3e-05 55_[+5]_57 chr3L:10793616-10793736 6.3e-05 76_[+5]_36 chr2R:10796364-10796484 8.1e-05 99_[+5]_13 chrX:13080544-13080664 8.1e-05 35_[+5]_77 chrX:9094085-9094205 8.1e-05 7_[+5]_105 chrX:11828758-11828878 8.1e-05 55_[+5]_57 chrX:15243311-15243431 9.8e-05 80_[+5]_32 chrX:9722076-9722196 0.00012 87_[+5]_25 chrX:879948-880068 0.00012 94_[+5]_18 chr2L:11491352-11491472 0.00013 107_[+5]_5 chr3R:17822265-17822385 0.00019 59_[+5]_53 chr3R:27642904-27643024 0.00019 84_[+5]_28 chrX:1409689-1409809 0.00019 9_[+5]_103 chr3R:14456192-14456312 0.00021 75_[+5]_37 chr2R:14035926-14036046 0.00021 62_[+5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGAGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAGAGA width=8 seqs=44 chrX:20445021-20445141 ( 106) GAAAGAGA 1 chr2R:13191547-13191667 ( 89) GAAAGAGA 1 chrX:3734918-3735038 ( 24) GAAAGAGA 1 chr2R:7692966-7693086 ( 83) GAAAGAGA 1 chrX:14971201-14971321 ( 71) GAAAGAGA 1 chr3L:9688604-9688724 ( 105) GAAAGAGA 1 chrX:2343479-2343599 ( 84) GAAAGAGA 1 chrX:10684064-10684184 ( 112) GAAAGAGA 1 chr2L:14051646-14051766 ( 78) GAAAGAGA 1 chrX:11017590-11017710 ( 55) GAAAGAGA 1 chr2R:20933083-20933203 ( 49) GAAAGAGA 1 chr2R:9343991-9344111 ( 33) GAAAGAGA 1 chrX:18888165-18888285 ( 27) GAAAGAGA 1 chrX:7543730-7543850 ( 78) GAAAGAGA 1 chr2R:20919874-20919994 ( 37) GAAAGAGA 1 chrX:2765593-2765713 ( 50) GAAAGAGA 1 chr3R:4955394-4955514 ( 32) GAAAGAGA 1 chrX:4398023-4398143 ( 58) GAAAGGGA 1 chr2R:8324050-8324170 ( 69) GAAAGGGA 1 chr3L:20757172-20757292 ( 99) GAAAGGGA 1 chrX:4139998-4140118 ( 16) GAAAGGGA 1 chrX:20230973-20231093 ( 30) GAAAGGGA 1 chr2R:13619647-13619767 ( 90) GAAAGGGA 1 chr3R:22220555-22220675 ( 68) GATAGAGA 1 chr2L:14470176-14470296 ( 53) GATAGAGA 1 chrX:6231931-6232051 ( 54) GATAGAGA 1 chrX:16562408-16562528 ( 72) GAGAGAGA 1 chrX:7225026-7225146 ( 87) GAGAGAGA 1 chrX:20352515-20352635 ( 109) GAGAGAGA 1 chrX:13664127-13664247 ( 56) GAGAGAGA 1 chr3L:10793616-10793736 ( 77) GAGAGAGA 1 chr2R:10796364-10796484 ( 100) GAAAGAGG 1 chrX:13080544-13080664 ( 36) GAAAGAGG 1 chrX:9094085-9094205 ( 8) GAAAGAGG 1 chrX:11828758-11828878 ( 56) GAAAGAGG 1 chrX:15243311-15243431 ( 81) GATAGGGA 1 chrX:9722076-9722196 ( 88) GAGAGGGA 1 chrX:879948-880068 ( 95) GAGAGGGA 1 chr2L:11491352-11491472 ( 108) GAAAGTGA 1 chr3R:17822265-17822385 ( 60) AAAAGAGA 1 chr3R:27642904-27643024 ( 85) GAAAGAAA 1 chrX:1409689-1409809 ( 10) GACAGAGA 1 chr3R:14456192-14456312 ( 76) GATAGAGG 1 chr2R:14035926-14036046 ( 63) GATAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGAGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3519 E= 3.7e-014 -334 -1210 181 -1210 211 -1210 -1210 -1210 156 -354 -81 -72 211 -1210 -1210 -1210 -1210 -1210 184 -1210 174 -1210 -45 -330 -334 -1210 181 -1210 190 -1210 -104 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGAGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 3.7e-014 0.022727 0.000000 0.977273 0.000000 1.000000 0.000000 0.000000 0.000000 0.681818 0.022727 0.159091 0.136364 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.772727 0.000000 0.204545 0.022727 0.022727 0.000000 0.977273 0.000000 0.863636 0.000000 0.136364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGAGA MEME-5 regular expression -------------------------------------------------------------------------------- GAAAG[AG]GA -------------------------------------------------------------------------------- Time 30.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6231931-6232051 1.05e-04 57_[+1(1.75e-05)]_8_[+1(5.21e-05)]_\ 8_[+3(8.99e-05)]_4_[+3(4.86e-05)]_11 chrX:11828758-11828878 1.27e-04 55_[+5(8.09e-05)]_13_[+1(1.75e-05)]_\ [+1(1.75e-05)]_28 chrX:10224824-10224944 1.97e-03 17_[+2(1.26e-05)]_21_[+2(2.32e-05)]_\ 16_[+2(1.26e-05)]_42 chr3R:4955394-4955514 2.84e-05 31_[+5(1.44e-05)]_11_[+1(5.21e-05)]_\ 2_[+1(1.75e-05)]_[+1(1.75e-05)]_44 chr2L:21857839-21857959 3.41e-05 72_[+5(1.44e-05)]_25_[+5(1.44e-05)]_\ 7 chr2R:18062059-18062179 2.91e-03 13_[+2(1.26e-05)]_[+2(1.26e-05)]_6_\ [+2(1.26e-05)]_[+2(1.26e-05)]_[+2(1.26e-05)]_17_[+4(3.82e-05)]_36 chrX:18636440-18636560 1.09e-04 72_[+5(1.44e-05)]_15_[+5(4.59e-05)]_\ 17 chr3R:17814045-17814165 4.73e-03 43_[+1(5.21e-05)]_69 chrX:9094085-9094205 1.33e-04 7_[+5(8.09e-05)]_17_[+1(1.75e-05)]_\ 36_[+1(8.32e-05)]_36 chrX:1043038-1043158 2.96e-03 11_[+2(2.32e-05)]_8_[+2(1.26e-05)]_\ 27_[+2(3.90e-05)]_50 chrX:18266953-18267073 4.91e-05 30_[+1(5.21e-05)]_24_[+5(1.44e-05)]_\ 15_[+5(1.44e-05)]_27 chr3R:8161626-8161746 3.80e-03 37_[+2(2.32e-05)]_16_[+2(2.32e-05)]_\ 51 chrX:6669169-6669289 2.18e-05 2_[+2(2.32e-05)]_19_[+2(1.26e-05)]_\ [+2(1.26e-05)]_75 chrX:2765593-2765713 5.63e-07 19_[+5(1.44e-05)]_22_[+5(1.44e-05)]_\ 26_[+1(1.75e-05)]_[+1(1.75e-05)]_21 chr3L:1032320-1032440 1.73e-05 32_[+1(1.75e-05)]_18_[+5(1.44e-05)]_\ 54 chr3L:21670068-21670188 9.58e-05 65_[+5(1.44e-05)]_21_[+3(8.99e-05)]_\ 18 chr2R:20919874-20919994 4.19e-05 36_[+5(1.44e-05)]_26_[+1(1.75e-05)]_\ [+1(1.75e-05)]_[+1(1.75e-05)]_26 chrX:879948-880068 1.36e-04 29_[+3(4.86e-05)]_8_[+1(5.21e-05)]_\ 4_[+1(8.32e-05)]_2_[+1(1.75e-05)]_5_[+1(5.21e-05)]_2_[+1(5.21e-05)]_22 chr3R:21559063-21559183 2.28e-03 24_[+4(3.82e-05)]_26_[+2(1.26e-05)]_\ 6_[+2(3.90e-05)]_40 chr3L:14298191-14298311 5.32e-09 14_[+5(1.44e-05)]_16_[+5(4.59e-05)]_\ 46_[+4(3.82e-05)]_6_[+2(2.32e-05)]_6 chrX:11703234-11703354 1.99e-03 5_[+2(1.26e-05)]_6_[+2(1.26e-05)]_6_\ [+2(1.26e-05)]_79 chrX:2446132-2446252 1.32e-02 120 chrX:12640824-12640944 6.75e-04 29_[+2(1.26e-05)]_8_[+2(1.26e-05)]_\ [+2(1.26e-05)]_20_[+2(1.26e-05)]_31 chr3L:19143671-19143791 3.85e-03 46_[+1(5.21e-05)]_66 chrX:12649828-12649948 2.16e-03 47_[+2(3.90e-05)]_30_[+2(1.26e-05)]_\ [+2(1.26e-05)]_19 chr2R:18355590-18355710 4.19e-03 120 chrX:11689691-11689811 2.98e-03 23_[+2(1.26e-05)]_23_[+2(1.26e-05)]_\ 58 chr2R:23624691-23624811 1.64e-02 39_[+4(3.82e-05)]_[+4(7.95e-05)]_18_\ [+2(3.90e-05)]_39 chrX:13080544-13080664 1.36e-02 35_[+5(8.09e-05)]_77 chrX:582335-582455 1.23e-04 69_[+1(1.75e-05)]_43 chr2R:17832366-17832486 1.25e-01 34_[+2(7.98e-05)]_78 chrX:18654442-18654562 2.84e-04 79_[+2(3.90e-05)]_33 chrX:21050224-21050344 6.65e-01 120 chr3R:29708445-29708565 8.17e-03 50_[+1(5.21e-05)]_15_[+3(8.99e-05)]_\ 39 chrX:21283019-21283139 1.38e-03 26_[+1(5.21e-05)]_18_[+1(5.21e-05)]_\ 60 chrX:7543730-7543850 4.20e-05 16_[+1(1.75e-05)]_19_[+5(1.44e-05)]_\ 26_[+5(1.44e-05)]_35 chrX:8617732-8617852 8.00e-03 28_[+4(3.82e-05)]_26_[+2(2.32e-05)]_\ 50 chrX:5548721-5548841 6.83e-04 23_[+2(1.26e-05)]_22_[+2(2.32e-05)]_\ 40_[+2(2.32e-05)]_11 chr3L:6110802-6110922 1.90e-03 120 chr2L:7122107-7122227 2.92e-03 15_[+2(1.26e-05)]_[+2(1.26e-05)]_37_\ [+2(1.26e-05)]_44 chr2R:8866400-8866520 1.56e-02 26_[+4(6.69e-05)]_27_[+2(3.90e-05)]_\ 51 chr3R:17951614-17951734 8.78e-05 23_[+5(1.44e-05)]_89 chrX:8801593-8801713 1.69e-03 70_[+3(4.86e-05)]_15_[+3(4.86e-05)]_\ 19 chrX:11397558-11397678 9.36e-04 104_[+2(1.26e-05)]_8 chrX:13293672-13293792 1.07e-04 32_[+5(1.44e-05)]_80 chrX:4545050-4545170 2.37e-02 50_[+2(3.90e-05)]_45_[+2(3.90e-05)]_\ 9 chr2R:10214737-10214857 8.04e-02 33_[+2(6.72e-05)]_79 chr3L:10793616-10793736 1.36e-04 47_[+1(1.75e-05)]_[+1(1.75e-05)]_\ [+1(1.75e-05)]_5_[+1(1.75e-05)]_36 chrX:9513823-9513943 3.41e-04 22_[+2(1.26e-05)]_16_[+2(1.26e-05)]_\ 2_[+4(3.82e-05)]_6_[+2(2.32e-05)]_42 chr3R:10615656-10615776 3.22e-05 37_[+5(1.44e-05)]_17_[+1(1.75e-05)]_\ 50 chr3L:16206236-16206356 5.39e-05 21_[+3(8.99e-05)]_16_[+1(1.75e-05)]_\ [+1(1.75e-05)]_15_[+1(5.21e-05)]_36 chrX:18093803-18093923 7.00e-02 120 chrX:13664127-13664247 6.12e-05 21_[+3(4.86e-05)]_26_[+1(1.75e-05)]_\ 14_[+1(1.75e-05)]_[+1(1.75e-05)]_27 chr2L:1885914-1886034 7.13e-05 78_[+1(1.75e-05)]_34 chr3L:547745-547865 2.57e-01 120 chr3R:17556384-17556504 1.79e-03 72_[+2(1.26e-05)]_[+2(1.26e-05)]_2_\ [+2(2.32e-05)]_14_[+2(2.32e-05)] chrX:13550915-13551035 3.45e-03 30_[+2(2.32e-05)]_17_[+2(1.26e-05)]_\ 20_[+4(6.69e-05)]_29 chr2L:11491352-11491472 5.43e-04 25_[+1(5.21e-05)]_42_[+5(4.59e-05)]_\ 37 chrX:9354948-9355068 1.16e-04 35_[+1(1.75e-05)]_77 chr2L:14470176-14470296 4.19e-05 26_[+5(1.44e-05)]_18_[+5(4.59e-05)]_\ 46_[+5(1.44e-05)]_6 chrX:18495625-18495745 2.08e-02 38_[+2(3.90e-05)]_32_[+4(6.69e-05)]_\ 34 chr2R:13619647-13619767 7.83e-05 31_[+3(4.86e-05)]_24_[+1(1.75e-05)]_\ 18_[+5(3.19e-05)]_23 chrX:11528973-11529093 7.24e-05 6_[+2(1.26e-05)]_[+2(1.26e-05)]_20_\ [+2(2.32e-05)]_70 chr3L:14356127-14356247 8.74e-06 44_[+3(4.86e-05)]_14_[+1(1.75e-05)]_\ 46 chr3L:22843709-22843829 2.55e-03 56_[+3(4.86e-05)]_56 chr3L:1369333-1369453 2.11e-03 47_[+1(5.21e-05)]_65 chr2R:14035926-14036046 1.09e-04 41_[+5(1.44e-05)]_71 chrX:18888165-18888285 3.22e-05 26_[+5(1.44e-05)]_15_[+5(1.44e-05)]_\ 20_[+1(1.75e-05)]_35 chrX:472800-472920 4.05e-05 60_[+5(1.44e-05)]_31_[+5(1.44e-05)]_\ 13 chr2L:16619335-16619455 1.33e-04 30_[+1(1.75e-05)]_[+1(1.75e-05)]_74 chrX:5561754-5561874 1.18e-05 77_[+5(1.44e-05)]_22_[+5(1.44e-05)]_\ 5 chr2L:20333212-20333332 9.77e-01 120 chr3R:30076618-30076738 8.21e-03 54_[+2(2.32e-05)]_16_[+2(2.32e-05)]_\ 34 chr2R:17328481-17328601 1.79e-02 5_[+2(3.90e-05)]_107 chrX:6812148-6812268 4.11e-07 32_[+2(6.72e-05)]_30_[+1(1.75e-05)]_\ 42 chr2L:9929224-9929344 3.40e-03 28_[+2(1.26e-05)]_[+2(1.26e-05)]_20_\ [+2(1.26e-05)]_2_[+2(1.26e-05)]_[+2(1.26e-05)]_30 chr2L:12337564-12337684 1.72e-02 120 chr3L:14489155-14489275 2.23e-03 32_[+1(8.32e-05)]_37_[+3(4.86e-05)]_\ 35 chr2L:5079336-5079456 7.08e-03 3_[+4(3.82e-05)]_34_[+2(3.90e-05)]_\ 67 chrX:15631524-15631644 7.82e-05 120 chr3R:22220555-22220675 9.88e-05 41_[+1(1.75e-05)]_[+1(1.75e-05)]_10_\ [+5(4.59e-05)]_45 chr2R:9343991-9344111 4.04e-05 8_[+1(1.75e-05)]_16_[+5(1.44e-05)]_\ 18_[+5(1.44e-05)]_54 chrX:6889489-6889609 6.63e-03 59_[+2(2.32e-05)]_16_[+2(2.32e-05)]_\ 29 chrX:19393557-19393677 2.33e-09 57_[+2(1.26e-05)]_6_[+1(1.75e-05)]_\ [+1(5.21e-05)]_33 chrX:2035087-2035207 2.35e-02 24_[+2(5.22e-05)]_19_[+2(3.90e-05)]_\ 61 chr3R:22375200-22375320 7.99e-05 58_[+5(1.44e-05)]_54 chr3R:10517076-10517196 8.18e-03 4_[+2(2.32e-05)]_17_[+2(2.32e-05)]_\ 83 chr2R:18377565-18377685 3.42e-03 5_[+3(8.99e-05)]_107 chrX:13200966-13201086 1.09e-04 70_[+5(1.44e-05)]_42 chrX:20230973-20231093 7.88e-05 29_[+5(3.19e-05)]_30_[+1(1.75e-05)]_\ [+1(1.75e-05)]_37 chrX:12602338-12602458 2.15e-02 120 chrX:8778019-8778139 2.94e-03 76_[+4(3.82e-05)]_24_[+2(2.32e-05)]_\ 4 chr3R:25770838-25770958 1.96e-02 120 chrX:10851620-10851740 5.75e-02 120 chr3L:16401204-16401324 7.66e-02 120 chr2R:20933083-20933203 2.53e-05 27_[+5(1.44e-05)]_13_[+5(1.44e-05)]_\ 4_[+1(1.75e-05)]_[+1(1.75e-05)]_44 chr3L:15231171-15231291 3.82e-03 40_[+2(3.90e-05)]_22_[+2(2.32e-05)]_\ 42 chr3L:10574540-10574660 3.44e-03 65_[+2(1.26e-05)]_47 chr2L:11353606-11353726 3.56e-01 120 chr3L:2182256-2182376 3.46e-03 46_[+2(1.26e-05)]_[+2(1.26e-05)]_\ [+2(1.26e-05)]_50 chrX:11017590-11017710 1.83e-05 6_[+5(1.44e-05)]_4_[+1(1.75e-05)]_\ [+1(1.75e-05)]_20_[+5(1.44e-05)]_16_[+5(1.44e-05)]_34 chr3R:16683774-16683894 7.35e-05 63_[+5(1.44e-05)]_49 chr2L:14051646-14051766 3.02e-05 22_[+1(1.75e-05)]_16_[+1(1.75e-05)]_\ 17_[+5(1.44e-05)]_41 chr2R:20596152-20596272 2.54e-04 120 chr2R:22797620-22797740 1.26e-02 120 chrX:17417551-17417671 5.68e-03 111_[+2(2.32e-05)]_1 chr3L:22141934-22142054 5.55e-03 3_[+2(2.32e-05)]_12_[+4(3.82e-05)]_\ 89 chrX:18098555-18098675 5.05e-02 120 chr3R:8697409-8697529 5.26e-04 16_[+2(2.32e-05)]_96 chrX:5008779-5008899 2.67e-03 31_[+2(1.26e-05)]_[+2(1.26e-05)]_\ [+2(1.26e-05)]_4_[+2(1.26e-05)]_22_[+2(2.32e-05)]_23 chrX:4139998-4140118 1.09e-04 15_[+5(3.19e-05)]_36_[+3(4.86e-05)]_\ 26_[+5(1.44e-05)]_19 chrX:10684064-10684184 4.13e-05 47_[+1(1.75e-05)]_4_[+3(8.99e-05)]_\ 4_[+5(1.44e-05)]_12_[+3(4.86e-05)]_6_[+5(1.44e-05)]_7 chrX:20352515-20352635 1.03e-04 24_[+3(4.86e-05)]_20_[+1(1.75e-05)]_\ 22_[+1(1.75e-05)]_[+1(1.75e-05)]_[+1(1.75e-05)]_[+1(1.75e-05)]_6 chrX:8167730-8167850 8.00e-04 120 chr2L:1304113-1304233 1.18e-03 83_[+3(8.99e-05)]_29 chr2L:4835910-4836030 8.92e-01 120 chrX:2062387-2062507 2.23e-04 33_[+2(1.26e-05)]_18_[+2(3.90e-05)]_\ 53 chrX:19396757-19396877 1.29e-04 65_[+1(1.75e-05)]_6_[+1(1.75e-05)]_\ 33 chr2L:21776217-21776337 7.85e-05 19_[+2(1.26e-05)]_[+2(1.26e-05)]_18_\ [+2(7.98e-05)]_59 chr3R:19241820-19241940 1.20e-04 2_[+1(1.75e-05)]_39_[+1(1.75e-05)]_\ 63 chrX:17536013-17536133 4.12e-03 97_[+2(2.32e-05)]_15 chr3R:10507939-10508059 7.28e-03 11_[+2(7.98e-05)]_44_[+2(2.32e-05)]_\ 49 chr2R:7248320-7248440 7.29e-01 120 chr2R:9046593-9046713 9.54e-01 120 chr2L:1479628-1479748 1.08e-04 52_[+5(1.44e-05)]_16_[+5(1.44e-05)]_\ 36 chrX:2343479-2343599 2.40e-06 83_[+5(1.44e-05)]_4_[+1(1.75e-05)]_\ [+5(1.44e-05)]_9 chrX:10382484-10382604 5.76e-07 81_[+2(2.32e-05)]_31 chrX:1409689-1409809 2.28e-05 9_[+3(4.86e-05)]_14_[+1(1.75e-05)]_\ [+3(4.86e-05)]_8_[+1(1.75e-05)]_57 chr2L:21814580-21814700 2.77e-05 31_[+3(8.99e-05)]_16_[+5(1.44e-05)]_\ 57 chr2R:19972771-19972891 4.72e-03 65_[+1(5.21e-05)]_47 chr3L:11103507-11103627 4.34e-01 120 chr3R:20623127-20623247 3.91e-01 120 chrX:17306824-17306944 1.66e-02 51_[+2(3.90e-05)]_61 chrX:3954126-3954246 1.95e-05 74_[+2(6.72e-05)]_38 chr3R:18358789-18358909 7.97e-03 22_[+2(2.32e-05)]_90 chr2R:8380476-8380596 3.08e-03 5_[+2(1.26e-05)]_[+2(1.26e-05)]_22_\ [+2(2.32e-05)]_69 chrX:23008891-23009011 3.31e-02 120 chr3L:20757172-20757292 1.09e-04 8_[+5(1.44e-05)]_15_[+3(4.86e-05)]_\ 36_[+5(1.44e-05)]_15_[+5(3.19e-05)]_14 chr3R:8300822-8300942 2.21e-03 103_[+2(1.26e-05)]_9 chr3L:12470681-12470801 9.97e-01 120 chr3L:9688604-9688724 4.19e-05 4_[+5(1.44e-05)]_[+3(4.86e-05)]_2_\ [+5(4.59e-05)]_6_[+5(1.44e-05)]_60_[+5(1.44e-05)]_8 chr3R:18537776-18537896 1.25e-01 40_[+2(7.98e-05)]_72 chr3L:14468124-14468244 8.08e-07 29_[+4(3.82e-05)]_16_[+2(2.32e-05)]_\ 33_[+5(3.19e-05)]_18 chr3R:9105815-9105935 8.12e-05 17_[+5(1.44e-05)]_95 chrX:2078179-2078299 7.63e-03 64_[+2(2.32e-05)]_48 chrX:7225026-7225146 2.91e-05 60_[+5(1.44e-05)]_4_[+1(1.75e-05)]_\ [+1(1.75e-05)]_32 chrX:17334622-17334742 1.69e-05 29_[+5(1.44e-05)]_16_[+1(1.75e-05)]_\ 59 chr3R:15396755-15396875 1.00e-03 39_[+2(2.32e-05)]_73 chr2R:8313758-8313878 1.15e-02 1_[+4(6.69e-05)]_2_[+2(6.72e-05)]_\ 39_[+4(3.82e-05)]_54 chr3R:15836388-15836508 7.80e-01 120 chrX:5160214-5160334 1.83e-03 10_[+2(1.26e-05)]_[+2(1.26e-05)]_\ [+2(1.26e-05)]_2_[+2(3.90e-05)]_76 chrX:8663325-8663445 5.21e-05 48_[+1(5.21e-05)]_16_[+5(1.44e-05)]_\ 40 chr2L:11952565-11952685 5.57e-06 51_[+5(1.44e-05)]_16_[+1(1.75e-05)]_\ 37 chr2R:12162328-12162448 8.50e-01 120 chrX:4008385-4008505 1.32e-03 71_[+1(5.21e-05)]_41 chrX:11790201-11790321 5.40e-05 97_[+5(1.44e-05)]_15 chr2R:8324050-8324170 4.20e-05 39_[+1(1.75e-05)]_[+1(8.32e-05)]_13_\ [+5(3.19e-05)]_15_[+5(1.44e-05)]_21 chrX:1407533-1407653 1.49e-01 26_[+2(7.98e-05)]_86 chr3R:6878835-6878955 9.43e-01 120 chrX:6670485-6670605 3.35e-03 21_[+2(1.26e-05)]_[+2(1.26e-05)]_\ [+2(1.26e-05)]_24_[+2(2.32e-05)]_43 chr3L:16480933-16481053 7.65e-03 41_[+4(3.82e-05)]_25_[+2(2.32e-05)]_\ 15_[+2(2.32e-05)]_15 chr3R:16437133-16437253 1.00e+00 120 chr3R:5257707-5257827 9.95e-01 120 chrX:7621170-7621290 1.62e-05 55_[+5(1.44e-05)]_17_[+5(1.44e-05)]_\ 32 chrX:16562408-16562528 5.76e-05 49_[+1(1.75e-05)]_2_[+1(1.75e-05)]_\ 2_[+1(1.75e-05)]_[+1(1.75e-05)]_[+1(1.75e-05)]_27 chr2R:22694816-22694936 1.00e+00 120 chr3R:5298318-5298438 8.81e-01 120 chr3L:20450957-20451077 9.72e-01 120 chr2L:11011625-11011745 9.93e-01 120 chr2R:22267919-22268039 1.59e-04 54_[+2(1.26e-05)]_16_[+2(2.32e-05)]_\ 34 chrX:12590050-12590170 3.61e-01 120 chr2L:14133338-14133458 4.78e-05 49_[+1(5.21e-05)]_36_[+1(1.75e-05)]_\ 19 chr3R:29537062-29537182 3.97e-03 68_[+2(2.32e-05)]_16_[+2(2.32e-05)]_\ 20 chr3L:10517746-10517866 1.27e-03 41_[+2(1.26e-05)]_6_[+2(3.90e-05)]_\ 12_[+2(3.90e-05)]_37 chr2L:6330398-6330518 9.98e-01 120 chr3R:14561233-14561353 1.43e-01 120 chr2L:10771006-10771126 2.52e-01 120 chrX:8813536-8813656 7.41e-03 85_[+1(5.21e-05)]_18_[+1(8.32e-05)]_\ 1 chr3L:14798979-14799099 4.51e-01 120 chrX:14971201-14971321 4.20e-05 42_[+1(1.75e-05)]_[+1(1.75e-05)]_\ [+1(1.75e-05)]_4_[+5(1.44e-05)]_42 chr3R:15314110-15314230 3.13e-03 26_[+2(1.26e-05)]_[+2(1.26e-05)]_78 chr2R:18159601-18159721 9.99e-01 120 chrX:5094523-5094643 3.45e-03 21_[+2(1.26e-05)]_41_[+2(1.26e-05)]_\ 18_[+2(3.90e-05)]_[+4(7.95e-05)]_8 chr3R:9238931-9239051 7.20e-01 120 chr2L:15008225-15008345 9.94e-01 120 chrX:3737914-3738034 8.03e-04 15_[+2(2.32e-05)]_52_[+2(2.32e-05)]_\ 37 chr2R:9585199-9585319 2.86e-01 120 chr2R:10796364-10796484 8.62e-03 90_[+5(3.19e-05)]_1_[+5(8.09e-05)]_\ 13 chr3L:21344351-21344471 8.40e-02 120 chr3L:4582441-4582561 3.46e-03 11_[+2(1.26e-05)]_32_[+2(1.26e-05)]_\ 16_[+2(6.72e-05)]_37 chrX:2334134-2334254 8.21e-03 79_[+2(2.32e-05)]_33 chr2L:6944277-6944397 8.31e-01 120 chr2L:16527478-16527598 4.59e-01 120 chrX:6303966-6304086 2.04e-02 46_[+2(3.90e-05)]_28_[+2(3.90e-05)]_\ 30 chr3R:14456192-14456312 8.24e-04 39_[+1(5.21e-05)]_73 chrX:9722076-9722196 9.32e-07 73_[+1(1.75e-05)]_20_[+1(5.21e-05)]_\ 11 chrX:16798302-16798422 5.01e-06 39_[+1(5.21e-05)]_20_[+1(1.75e-05)]_\ 8_[+3(8.99e-05)]_29 chr2L:4455540-4455660 1.20e-01 120 chr3L:11558365-11558485 5.31e-01 120 chrX:16452093-16452213 3.29e-03 49_[+1(8.32e-05)]_12_[+3(8.99e-05)]_\ 43 chr2L:12310129-12310249 2.30e-03 76_[+3(4.86e-05)]_19_[+3(4.86e-05)]_\ 9 chr3L:16852957-16853077 2.94e-01 120 chr2R:15570322-15570442 9.07e-01 120 chrX:12342925-12343045 3.43e-03 35_[+2(1.26e-05)]_4_[+2(2.32e-05)]_\ 16_[+2(2.32e-05)]_41 chrX:6669918-6670038 3.45e-03 28_[+2(1.26e-05)]_32_[+4(3.82e-05)]_\ 44 chr3L:14567826-14567946 9.92e-01 120 chrX:21116203-21116323 7.05e-02 120 chr3R:25248707-25248827 9.42e-01 120 chr3R:10854026-10854146 9.13e-01 120 chr3R:27642904-27643024 4.15e-05 64_[+1(5.21e-05)]_16_[+5(1.44e-05)]_\ 24 chr3R:9530858-9530978 1.21e-02 11_[+1(8.32e-05)]_101 chr2R:9144817-9144937 3.30e-01 120 chr2R:18176877-18176997 9.57e-01 120 chr2R:18174242-18174362 4.13e-01 120 chrX:13386908-13387028 2.31e-02 68_[+2(3.90e-05)]_44 chr3R:6923884-6924004 3.44e-03 34_[+2(1.26e-05)]_78 chr2R:7692966-7693086 2.64e-05 58_[+1(8.32e-05)]_16_[+5(1.44e-05)]_\ 4_[+5(4.59e-05)]_2_[+1(1.75e-05)]_[+1(1.75e-05)] chr2R:8963769-8963889 5.19e-02 59_[+4(7.95e-05)]_53 chr2R:18690702-18690822 6.29e-03 49_[+2(3.90e-05)]_63 chr3R:31056656-31056776 9.99e-01 120 chr3L:11310467-11310587 2.12e-02 105_[+2(3.90e-05)]_7 chr3R:21558033-21558153 2.05e-04 53_[+2(1.26e-05)]_2_[+2(2.32e-05)]_\ 49 chrX:4398023-4398143 4.93e-04 57_[+5(3.19e-05)]_13_[+1(5.21e-05)]_\ 14_[+3(8.99e-05)]_12 chr2R:8928769-8928889 9.92e-01 120 chr2R:9663706-9663826 7.59e-03 42_[+2(3.90e-05)]_14_[+2(2.32e-05)]_\ 17_[+2(2.32e-05)]_23 chr2L:18890844-18890964 8.12e-03 92_[+2(2.32e-05)]_20 chr3L:20776427-20776547 2.66e-01 120 chr3L:18809908-18810028 8.95e-06 52_[+5(1.44e-05)]_60 chr2R:13629724-13629844 2.78e-03 22_[+2(2.32e-05)]_30_[+2(1.26e-05)]_\ 8_[+2(1.26e-05)]_4_[+2(1.26e-05)]_24 chr2R:7679111-7679231 7.76e-01 120 chrX:18990748-18990868 1.22e-02 [+4(7.95e-05)]_[+4(7.95e-05)]_104 chrX:15243311-15243431 1.08e-05 80_[+5(9.79e-05)]_6_[+3(4.86e-05)]_\ 18 chrX:3734918-3735038 5.41e-06 23_[+5(1.44e-05)]_11_[+1(1.75e-05)]_\ [+1(1.75e-05)]_4_[+1(1.75e-05)]_50 chrX:11145011-11145131 2.20e-02 39_[+2(3.90e-05)]_15_[+2(3.90e-05)]_\ 50 chr2R:6614325-6614445 7.77e-01 120 chr2R:10116729-10116849 9.41e-01 120 chr2R:13191547-13191667 3.20e-05 32_[+1(1.75e-05)]_4_[+1(1.75e-05)]_\ 36_[+5(1.44e-05)]_24 chr3R:31736358-31736478 9.15e-01 120 chr3R:17822265-17822385 1.74e-03 35_[+3(8.99e-05)]_6_[+3(4.86e-05)]_\ 63 chr3R:23751406-23751526 9.46e-01 120 chr3L:19085411-19085531 9.69e-01 120 chrX:4380996-4381116 9.26e-04 3_[+2(1.26e-05)]_63_[+4(6.69e-05)]_\ 38 chrX:20445021-20445141 4.20e-05 25_[+1(8.32e-05)]_14_[+5(1.44e-05)]_\ [+5(6.34e-05)]_8_[+1(1.75e-05)]_[+1(1.75e-05)]_18_[+5(1.44e-05)]_7 chr3L:7621604-7621724 2.85e-05 85_[+5(1.44e-05)]_27 chrX:7435723-7435843 1.21e-05 65_[+5(1.44e-05)]_26_[+5(1.44e-05)]_\ 13 chrX:17137256-17137376 9.16e-01 120 chr2R:6032404-6032524 2.23e-01 120 chr2R:14640983-14641103 1.36e-05 19_[+2(9.56e-05)]_44_[+3(4.86e-05)]_\ 41 chr2L:10686633-10686753 1.00e+00 120 chrX:19264536-19264656 3.35e-03 1_[+2(1.26e-05)]_[+2(1.26e-05)]_\ [+2(2.32e-05)]_95 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************